BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030808
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q688X9|DI191_ORYSJ Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica
GN=DI19-1 PE=2 SV=1
Length = 226
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 103/137 (75%), Gaps = 7/137 (5%)
Query: 1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
MDS+ W SRLAAAKR Y Q H DR +++ +++++VRP+F CPYCYED D+ S
Sbjct: 1 MDSEHWISRLAAAKRFYAAQLGH-----ADRAGMEEVDMDEEVRPEFACPYCYEDHDVVS 55
Query: 61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
LC+HLE+EH E CPICS K+A+DML+HIT+QHG+LFK RRRLRR IP SQAL
Sbjct: 56 LCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFK--NRRRLRRFVIPGSQAL 113
Query: 121 SLLGRDLREAHLQVLLG 137
SLL RDLREAHLQVLLG
Sbjct: 114 SLLSRDLREAHLQVLLG 130
>sp|Q6H6E6|DI194_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp.
japonica GN=DI19-4 PE=2 SV=1
Length = 245
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 108/150 (72%), Gaps = 13/150 (8%)
Query: 1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQ-------------IDRLSIDDFEVEDDVRPDF 47
MDSD W SRL AAKRQY LQ+ + +DR DD E ED+VRPDF
Sbjct: 1 MDSDHWISRLMAAKRQYALQRAQNHHHATATATATAASHSHLDRYGYDDVEPEDEVRPDF 60
Query: 48 PCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRR 107
PCPYCYED DI SLC+HLEDEH ESKV CP+CS ++++D+L HITLQH +LF+LQR
Sbjct: 61 PCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFRLQRHH 120
Query: 108 RLRRVAIPSSQALSLLGRDLREAHLQVLLG 137
RLRRVA+PS+ ALSL GRDL+E +L+VLLG
Sbjct: 121 RLRRVAVPSNHALSLGGRDLQETYLKVLLG 150
>sp|Q5QMP3|DI193_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp.
japonica GN=DI19-3 PE=2 SV=1
Length = 246
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 93/152 (61%), Gaps = 17/152 (11%)
Query: 1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVR---------------P 45
MDS+ W S LAAAKR Y Q H + + E+EDD P
Sbjct: 1 MDSEHWISSLAAAKRFYAAQLGHVDDMAGIGMEEVEMEMEDDGEGMELELEMQLEEATWP 60
Query: 46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQR 105
D CPYCYED DIASLC+HLE++H E + CPIC K+ RDML+HIT+QHG+LFK
Sbjct: 61 DVACPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFK--S 118
Query: 106 RRRLRRVAIPSSQALSLLGRDLREAHLQVLLG 137
RR+RR IP SQALSLL RDLR+A LQ LLG
Sbjct: 119 GRRMRRFDIPESQALSLLSRDLRDAQLQALLG 150
>sp|Q6NM26|DI196_ARATH Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana
GN=DI19-6 PE=1 SV=1
Length = 222
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 5/136 (3%)
Query: 1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
MDSD W+ RLA+A R+Y L S + L ++ E EDD R ++ CP+C + FDI S
Sbjct: 1 MDSDSWSDRLASASRRYQLD---FLSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS 57
Query: 61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
LC H++++H ++K VCPIC+VKV+ DM++HITLQH ++FK+ R+R+ RR S L
Sbjct: 58 LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRKRKSRRGGAQS--ML 115
Query: 121 SLLGRDLREAHLQVLL 136
S+L R+ + + Q L
Sbjct: 116 SILKREFPDGNFQSLF 131
>sp|Q84J70|DI193_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana
GN=DI19-3 PE=1 SV=1
Length = 223
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 88/137 (64%), Gaps = 5/137 (3%)
Query: 1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
MDSD W+ RLA+A R+Y L S L ++ + E++ R +F CP+C + FDI S
Sbjct: 1 MDSDSWSDRLASATRRYQLA---FPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVS 57
Query: 61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
LC H++++H E+K VCP+C+V+V DM++HITLQH ++FK+ R+R+ RR S L
Sbjct: 58 LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGG--SYSTL 115
Query: 121 SLLGRDLREAHLQVLLG 137
S+L R+ + + Q L G
Sbjct: 116 SILRREFPDGNFQSLFG 132
>sp|Q39083|DI191_ARATH Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1
PE=1 SV=2
Length = 206
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 32 LSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLS 91
+ ++ + +DD + +F CP+C E +DI LC H++DEH+ ESK VCP+CS+KV D+++
Sbjct: 20 MGFEEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVA 79
Query: 92 HITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLG 137
HITL HG LFKLQR+R+ R+ S+ LSLL ++LRE LQ LLG
Sbjct: 80 HITLHHGSLFKLQRKRKSRKSGTNST--LSLLRKELREGDLQRLLG 123
>sp|Q9FJ17|DI197_ARATH Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana
GN=DI19-7 PE=1 SV=2
Length = 211
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 32 LSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLS 91
L + D E EDD++ +F CP+C ++FDI LC H++ H E+K VCP+C+ KV D++
Sbjct: 28 LYLGDVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVG 87
Query: 92 HITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLG 137
HIT QHG++FK+QRRRRLR+ SS L+ L ++LREA+LQ L G
Sbjct: 88 HITTQHGNVFKVQRRRRLRKGGY-SSTYLT-LKKELREANLQSLGG 131
>sp|Q5W794|DI192_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp.
japonica GN=DI19-2 PE=2 SV=2
Length = 233
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 66/91 (72%)
Query: 47 FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRR 106
+ CP+C EDFD + C H++DEH+ E+K VCPIC+ +V D++ H+T+QHG FK+QRR
Sbjct: 54 YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRR 113
Query: 107 RRLRRVAIPSSQALSLLGRDLREAHLQVLLG 137
RR+R+++ S LSLL +DLR+ LQ LG
Sbjct: 114 RRVRKISSGSHSLLSLLRKDLRDGSLQSFLG 144
>sp|Q8VXU6|DI194_ARATH Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana
GN=DI19-4 PE=1 SV=1
Length = 224
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
Query: 35 DDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHIT 94
+D E EDD++ +F CP+C EDFDI LC H+++EH E+K VCP+C+ +V D++ HIT
Sbjct: 35 EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVGLDIVGHIT 94
Query: 95 LQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLL 136
QH + FK+QRRRRLRR S+ L ++LREA+LQ LL
Sbjct: 95 TQHANFFKVQRRRRLRRGGYSSTYL--ALKKELREANLQSLL 134
>sp|O04259|DI195_ARATH Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana
GN=DI19-5 PE=1 SV=2
Length = 214
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 47/67 (70%)
Query: 36 DFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITL 95
+FE +D++ D+PCP+C +D+D+ LC H+++EH ++ +CP+CS +V M+ HIT
Sbjct: 32 EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGICPVCSRRVKMHMVDHITT 91
Query: 96 QHGHLFK 102
QH +FK
Sbjct: 92 QHRDVFK 98
>sp|Q8GWK1|DI192_ARATH Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Arabidopsis thaliana
GN=DI19-2 PE=1 SV=1
Length = 221
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 38 EVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQH 97
EV+DD+ ++PCP+C D+D+ LC H+++EH E+ +CP+CS +V M+ HIT H
Sbjct: 38 EVDDDIAVEYPCPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHH 97
Query: 98 GHLFKLQRRRRLRR 111
+ K +++ R
Sbjct: 98 RDVLKSEQKEMSYR 111
>sp|Q5JME8|DI195_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Oryza sativa subsp.
japonica GN=DI19-5 PE=2 SV=1
Length = 202
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 47 FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRR 106
FPCP+CY + ++ +C+HL++EH +++ VCP+C+ + RDM +H +QH HL K ++
Sbjct: 37 FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQHSHLLKRRKP 96
Query: 107 RR 108
R
Sbjct: 97 SR 98
>sp|Q7XBA5|DI196_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Oryza sativa subsp.
japonica GN=DI19-6 PE=2 SV=1
Length = 208
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 48 PCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQR 105
PCP+CY + ++ LC HL++EH + K VCPIC+ + +D H +QH HL K ++
Sbjct: 38 PCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNLDKDTDEHFRVQHSHLLKRRK 95
>sp|Q4U5R4|RN114_BOVIN RING finger protein 114 OS=Bos taurus GN=RNF114 PE=2 SV=1
Length = 230
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
R FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 140 RYTFPCPYCPEKNFDQEGLVEHCKLSHSTDTKSVVCPICA 179
>sp|Q6J2U6|RN114_RAT RING finger protein 114 OS=Rattus norvegicus GN=Rnf114 PE=2 SV=1
Length = 229
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
R FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 139 RYTFPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICA 178
>sp|Q9ET26|RN114_MOUSE RING finger protein 114 OS=Mus musculus GN=Rnf114 PE=2 SV=2
Length = 229
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
R FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 139 RYTFPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICA 178
>sp|Q6J1I8|RN114_PIG RING finger protein 114 OS=Sus scrofa GN=RNF114 PE=2 SV=1
Length = 228
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
R FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 138 RYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICA 177
>sp|Q6J212|RN114_PANTR RING finger protein 114 OS=Pan troglodytes GN=RNF114 PE=2 SV=1
Length = 228
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
R FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 138 RYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICA 177
>sp|Q9Y508|RN114_HUMAN RING finger protein 114 OS=Homo sapiens GN=RNF114 PE=1 SV=1
Length = 228
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
R FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 138 RYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICA 177
>sp|Q9P0J7|KCMF1_HUMAN E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens GN=KCMF1 PE=1
SV=2
Length = 381
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARDMLSHITLQH 97
F CPYC + + SL H+ EH+ S +CPIC+ V D +H+TL+H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q1LZE1|KCMF1_BOVIN E3 ubiquitin-protein ligase KCMF1 OS=Bos taurus GN=KCMF1 PE=2 SV=1
Length = 381
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARDMLSHITLQH 97
F CPYC + + SL H+ EH+ S +CPIC+ V D +H+TL+H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q6GPB6|KCMF1_XENLA E3 ubiquitin-protein ligase KCMF1 OS=Xenopus laevis GN=kcmf1 PE=2
SV=1
Length = 381
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARDMLSHITLQH 97
F CPYC + + SL H+ EH+ S +CPIC+ V D +H+TL+H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q80UY2|KCMF1_MOUSE E3 ubiquitin-protein ligase KCMF1 OS=Mus musculus GN=Kcmf1 PE=2
SV=1
Length = 381
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARDMLSHITLQH 97
F CPYC + + SL H+ EH+ S +CPIC+ V D +H+TL+H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q7T321|KCMF1_DANRE E3 ubiquitin-protein ligase KCMF1 OS=Danio rerio GN=kcmf1 PE=2 SV=1
Length = 383
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARDMLSHITLQH 97
F CPYC + + SL H+ EH+ S +CPIC+ V D +H+TL+H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|O15090|ZN536_HUMAN Zinc finger protein 536 OS=Homo sapiens GN=ZNF536 PE=1 SV=3
Length = 1300
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 38 EVEDDVRPD--FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITL 95
++EDD R + +PCP C + F S+ S H+ E K CP C + A+ I L
Sbjct: 119 DIEDDARKNRKYPCPLCGKRFRFNSILSLHMRTHTGE-KPFKCPYCDHRAAQKGNLKIHL 177
Query: 96 QHGHLFKLQR-RRRLR 110
+ L L + R R+R
Sbjct: 178 RTHKLGNLGKGRGRVR 193
>sp|Q8K083|ZN536_MOUSE Zinc finger protein 536 OS=Mus musculus GN=Znf536 PE=2 SV=1
Length = 1302
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 38 EVEDDVRPD--FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITL 95
++EDD R + +PCP C + F S+ S H+ E K CP C + A+ I L
Sbjct: 119 DIEDDARKNRKYPCPLCGKRFRFNSILSLHMRTHTGE-KPFKCPYCDHRAAQKGNLKIHL 177
Query: 96 QHGHLFKLQR-RRRLR 110
+ L L + R R+R
Sbjct: 178 RTHKLGNLGKGRGRVR 193
>sp|Q1L721|RN138_XENLA E3 ubiquitin-protein ligase RNF138 OS=Xenopus laevis GN=rnf138 PE=1
SV=1
Length = 222
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS-------VKVARDMLSHITLQ 96
P + CP C E + + SL H + H E VCPIC+ ++ ++++H+ +
Sbjct: 132 PKYKCPLCSEHNLNQRSLLEHCNNVHYYEEVEMVCPICATLPWGDPIQTTGNVIAHLNAR 191
Query: 97 H 97
H
Sbjct: 192 H 192
>sp|O60315|ZEB2_HUMAN Zinc finger E-box-binding homeobox 2 OS=Homo sapiens GN=ZEB2 PE=1
SV=1
Length = 1214
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 40 EDDVRPDFP--------CPYCYEDFD-IASLCSHLEDEHSCESKVTVCPICSVKVA---- 86
E+D+ P P CPYC + + SL H++ H + CP+CS A
Sbjct: 196 ENDLPPGTPDAFAQLLTCPYCDRGYKRLTSLKEHIKYRHEKNEENFSCPLCSYTFAYRTQ 255
Query: 87 --RDMLSHI--TLQHGHLFKLQRRRRLR 110
R M++H T QH L + R+ +
Sbjct: 256 LERHMVTHKPGTDQHQMLTQGAGNRKFK 283
>sp|Q9R0G7|ZEB2_MOUSE Zinc finger E-box-binding homeobox 2 OS=Mus musculus GN=Zeb2 PE=1
SV=2
Length = 1215
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 40 EDDVRPDFP--------CPYCYEDFD-IASLCSHLEDEHSCESKVTVCPICSVKVA---- 86
E+D+ P P CPYC + + SL H++ H + CP+CS A
Sbjct: 196 ENDLPPGTPDAFAQLLTCPYCDRGYKRLTSLKEHIKYRHEKNEENFSCPLCSYTFAYRTQ 255
Query: 87 --RDMLSHI--TLQHGHLFKLQRRRRLR 110
R M++H T QH L + R+ +
Sbjct: 256 LERHMVTHKPGTDQHQMLTQGAGNRKFK 283
>sp|Q6N043|Z280D_HUMAN Zinc finger protein 280D OS=Homo sapiens GN=ZNF280D PE=1 SV=3
Length = 979
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 49 CPYCYEDFDIA-SLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQH 97
C +CY F L H+E H+ T+C IC + + H+ LQH
Sbjct: 360 CQHCYRQFPTPFQLQCHIESTHTPHEFSTICKICELSFETE---HVLLQH 406
>sp|Q2JWU6|HEM1_SYNJA Glutamyl-tRNA reductase OS=Synechococcus sp. (strain JA-3-3Ab)
GN=hemA PE=3 SV=1
Length = 431
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 118 QALSLLGRDLREAHLQVLLGVLKILVQKVLH 148
+ALS LG+D E HL+V+ + + +V K+LH
Sbjct: 362 KALSRLGKDFAEKHLEVIEALTRGIVNKILH 392
>sp|Q32LN5|RN138_BOVIN E3 ubiquitin-protein ligase RNF138 OS=Bos taurus GN=RNF138 PE=2
SV=1
Length = 245
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC-------SVKVARDMLSHITLQ 96
P F CP C E +F L H H + CPIC +V R+ +SH+ +
Sbjct: 155 PTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQVTRNFVSHLNQR 214
Query: 97 H----GHLFKLQ 104
H G LQ
Sbjct: 215 HQFDYGEFVNLQ 226
>sp|Q2JJG8|HEM1_SYNJB Glutamyl-tRNA reductase OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=hemA PE=3 SV=1
Length = 431
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 118 QALSLLGRDLREAHLQVLLGVLKILVQKVLH 148
+ALS LG+D E HL+V+ + + +V K+LH
Sbjct: 362 KALSRLGKDFAEKHLEVIDALTRGIVNKILH 392
>sp|A6VDE4|Y5760_PSEA7 UPF0061 protein PSPA7_5760 OS=Pseudomonas aeruginosa (strain PA7)
GN=PSPA7_5760 PE=3 SV=1
Length = 486
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 50 PYCY-EDFDIASLCSHLEDE--HSCESKVTVC------------PICSVKVARDMLS-HI 93
PY + +DFD +C+H +D +S ++V + P+ V R L +
Sbjct: 265 PYAFLDDFDANHICNHSDDSGRYSFSNQVPIAHWNLAALAQALTPLVEVDELRASLELFL 324
Query: 94 TLQHGHLFKLQRRRRLRRVAIPSSQAL 120
L H L RRR VA+ + QAL
Sbjct: 325 PLYQAHYLDLMRRRLGLGVAVENDQAL 351
>sp|Q8WVD3|RN138_HUMAN E3 ubiquitin-protein ligase RNF138 OS=Homo sapiens GN=RNF138 PE=1
SV=1
Length = 245
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC-------SVKVARDMLSHITLQ 96
P F CP C E +F L H H + CPIC ++ R+ +SH+ +
Sbjct: 155 PTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQR 214
Query: 97 H----GHLFKLQ 104
H G LQ
Sbjct: 215 HQFDYGEFVNLQ 226
>sp|Q9CQE0|RN138_MOUSE E3 ubiquitin-protein ligase RNF138 OS=Mus musculus GN=Rnf138 PE=2
SV=1
Length = 245
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC-------SVKVARDMLSHITLQ 96
P F CP C E +F L H H + CPIC ++ R+ +SH+ +
Sbjct: 155 PTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQR 214
Query: 97 H----GHLFKLQ 104
H G LQ
Sbjct: 215 HQFDYGEFVNLQ 226
>sp|Q96A37|RN166_HUMAN RING finger protein 166 OS=Homo sapiens GN=RNF166 PE=2 SV=1
Length = 237
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 44 RPDFPCPYC-YEDFDIASLCSHLEDEHSCESKVTVCPICSV 83
R F CPYC + D L H + H + VCPICS
Sbjct: 147 RSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSA 187
>sp|O16999|ZPR1_CAEEL Zinc finger protein ZPR1 homolog OS=Caenorhabditis elegans
GN=W03F9.1 PE=3 SV=2
Length = 455
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 31 RLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDML 90
LS DD+E V D CP C ED + +C+ + + CP C K
Sbjct: 11 NLSADDYEAAPIVV-DSVCPVCEEDGETRIMCTSIPYYRAVILMSFECPHCGHKNNEIQS 69
Query: 91 SHITLQHGHL--FKLQRRRRLRRVAIPSSQA 119
+HG L ++Q+ LRR + S A
Sbjct: 70 GEAVQEHGTLIVLRVQKPEDLRRQLVKSEYA 100
>sp|Q6J1I7|RN166_RAT RING finger protein 166 OS=Rattus norvegicus GN=Rnf166 PE=2 SV=1
Length = 237
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 44 RPDFPCPYC-YEDFDIASLCSHLEDEHSCESKVTVCPICSV 83
R F CPYC + D L H + H + VCPICS
Sbjct: 147 RSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSA 187
>sp|Q3U9F6|RN166_MOUSE RING finger protein 166 OS=Mus musculus GN=Rnf166 PE=2 SV=1
Length = 237
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 44 RPDFPCPYC-YEDFDIASLCSHLEDEHSCESKVTVCPICSV 83
R F CPYC + D L H + H + VCPICS
Sbjct: 147 RSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSA 187
>sp|Q9H1K0|RBNS5_HUMAN Rabenosyn-5 OS=Homo sapiens GN=ZFYVE20 PE=1 SV=2
Length = 784
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 33 SIDDFEVEDDVRPDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSV----KVAR 87
S+DD +VR F CP C +D L SH E+EHS E + I S+ K A+
Sbjct: 3 SLDD---PGEVREGFLCPLCLKDLQSFYQLHSHYEEEHSGEDRDVKGQIKSLVQKAKKAK 59
Query: 88 DML 90
D L
Sbjct: 60 DRL 62
>sp|Q8ND82|Z280C_HUMAN Zinc finger protein 280C OS=Homo sapiens GN=ZNF280C PE=1 SV=1
Length = 737
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 49 CPYCYEDFDIA-SLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQH 97
C +CY + L H+E H+ T+C IC + + HI LQH
Sbjct: 355 CQHCYRQYPTPFQLQCHIESTHTPHEFSTICKICELSFETE---HILLQH 401
>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster
GN=mib1 PE=1 SV=3
Length = 1226
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 33 SIDDFEVED---------DVRPDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICS 82
++++F+++D D++ CP C++ ++ LC H + C ++ CPIC
Sbjct: 1158 NVNNFQMDDVQKLKQQLQDIKEQTMCPVCFDRIKNMVFLCGHGTCQ-MCGDQIEGCPICR 1216
Query: 83 VKVARDML 90
V + +L
Sbjct: 1217 KTVEKRIL 1224
>sp|Q86K46|Y7243_DICDI TNF receptor-associated factor family protein DDB_G0277243
OS=Dictyostelium discoideum GN=DDB_G0277243 PE=3 SV=1
Length = 423
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 49 CPYCYEDFDIASLCSHLEDEHSCESKVTVCP----ICSVKVARDMLS-HITLQHGHLFKL 103
C +C + F SL +H+ +E C + V CP C+ ++ R LS H+T + H+ +
Sbjct: 193 CEFCKDKFGRRSLENHIANE--CPNVVIDCPHKEGGCTARIKRCYLSQHLTEEDNHIRYM 250
Query: 104 QRRRRLRRVAIPSS-QALSLLGRDLREAHLQV 134
Q+ R+ + S + + L D +E +V
Sbjct: 251 QKIIEKHRIQVEESDRIIKKLRVDYKELEKRV 282
>sp|P08970|SUHW_DROME Protein suppressor of hairy wing OS=Drosophila melanogaster
GN=su(Hw) PE=1 SV=2
Length = 941
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVAR 87
DFPC C + +L + E++H K C IC R
Sbjct: 318 DFPCSICNANLRSEALLALHEEQHKSRGKPYACKICGKDFTR 359
>sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis GN=rnf166 PE=2 SV=1
Length = 241
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 44 RPDFPCPYC-YEDFDIASLCSHLEDEHSCESKVTVCPICSV 83
R F CPYC + D L H + H + VCPICS
Sbjct: 151 RSTFVCPYCGARNLDQQELVKHCMENHRNDPNKVVCPICSA 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,665,955
Number of Sequences: 539616
Number of extensions: 2302476
Number of successful extensions: 7081
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 6996
Number of HSP's gapped (non-prelim): 120
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)