BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030809
MTMSLSIASTTTITFPTEPFSKIPKSTFNGVQIRQSWPIRTPLRFATSSSGSRGSSAVVM
MAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLT
VKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAAEAEKSA

High Scoring Gene Products

Symbol, full name Information P value
AT5G65220 protein from Arabidopsis thaliana 1.8e-39

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030809
        (171 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2171835 - symbol:AT5G65220 species:3702 "Arabi...   421  1.8e-39   1


>TAIR|locus:2171835 [details] [associations]
            symbol:AT5G65220 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0009295 "nucleoid" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0006354 "DNA-dependent
            transcription, elongation" evidence=RCA] [GO:0042793 "transcription
            from plastid promoter" evidence=RCA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=RCA]
            InterPro:IPR001854 Pfam:PF00831 PROSITE:PS00579 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006412 GO:GO:0009941
            GO:GO:0005840 GO:GO:0003735 EMBL:AB013395 GO:GO:0009295
            EMBL:AY045966 EMBL:AY079351 EMBL:AY085663 IPI:IPI00538817
            RefSeq:NP_201325.1 UniGene:At.24943 UniGene:At.67840
            ProteinModelPortal:Q9FJP3 SMR:Q9FJP3 IntAct:Q9FJP3 STRING:Q9FJP3
            PaxDb:Q9FJP3 PRIDE:Q9FJP3 EnsemblPlants:AT5G65220.1 GeneID:836647
            KEGG:ath:AT5G65220 GeneFarm:213 TAIR:At5g65220 eggNOG:NOG302849
            HOGENOM:HOG000239499 InParanoid:Q9FJP3 KO:K02904 OMA:FMLRLQK
            PhylomeDB:Q9FJP3 ProtClustDB:CLSN2686451 EvolutionaryTrace:Q9FJP3
            Genevestigator:Q9FJP3 GermOnline:AT5G65220 Gene3D:1.10.287.310
            SUPFAM:SSF46561 TIGRFAMs:TIGR00012 Uniprot:Q9FJP3
        Length = 173

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 96/171 (56%), Positives = 113/171 (66%)

Query:     3 MSLSIAST-TTITFPTEPFSKIP-KSTFNGVQIRQSWPIRTPLRFATXXXXXXXXXAVVM 60
             +SLSIA+  T   F     S     S+F+GV+I+     R P   A          +VVM
Sbjct:     2 LSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPA--AATISSSSPKPSVVM 59

Query:    61 MAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXXLT 120
             M+KRE E+KEIR+KTTE++ EEVVDLKGELFMLRLQKS RNEFKSS+F          LT
Sbjct:    60 MSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLT 119

Query:   121 VKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQXXXXXXXXXKSA 171
             VKRERE++EGI KRLSRKLDRQWKKSIV RPPPSLKKLQ         ++A
Sbjct:   120 VKREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAEAA 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.348    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       143   0.00091  102 3  10 22  0.46    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  160 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.82u 0.08s 21.90t   Elapsed:  00:00:02
  Total cpu time:  21.82u 0.08s 21.90t   Elapsed:  00:00:02
  Start:  Thu May  9 22:33:50 2013   End:  Thu May  9 22:33:52 2013

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