BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030809
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJP3|RK29_ARATH 50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana
GN=RPL29 PE=1 SV=1
Length = 173
Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/159 (64%), Positives = 123/159 (77%), Gaps = 4/159 (2%)
Query: 3 MSLSIAS--TTTITFPTEPFSKIPKSTFNGVQIRQSWPIRTPLRFATSSSGSRGSSAVVM 60
+SLSIA+ T I + S+F+GV+I+ R P A + S S +VVM
Sbjct: 2 LSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPA--AATISSSSPKPSVVM 59
Query: 61 MAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLT 120
M+KRE E+KEIR+KTTE++ EEVVDLKGELFMLRLQKS RNEFKSS+FRRM++++ARMLT
Sbjct: 60 MSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLT 119
Query: 121 VKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 159
VKRERE++EGI KRLSRKLDRQWKKSIV RPPPSLKKLQ
Sbjct: 120 VKREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQ 158
>sp|Q9SWI6|RK29_MAIZE 50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2
SV=1
Length = 161
Score = 160 bits (405), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 124/164 (75%), Gaps = 9/164 (5%)
Query: 2 TMSLSIASTTTITFPTEPFSKIPKSTFNGVQIRQSWPIRTPLRFATSSSGSRGS----SA 57
TMSL+ AS + P ++ P + F +++ + T RFA + S+ + +A
Sbjct: 3 TMSLAAASPLA-SIPRGIAAQAPCAAFLSIRLGGA----TATRFAGLAVASQPAERRAAA 57
Query: 58 VVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIAR 117
+V MAKRE+E++EIRA TTE++ EEVVDLKGELF+LRL++S R EFK+SEF RMR+RIAR
Sbjct: 58 MVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIAR 117
Query: 118 MLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEE 161
MLTVKRERE+E+GINKRLSRKLDR+WK+SIVVRPPPSL+ +EE
Sbjct: 118 MLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161
>sp|B1WQR8|RL29_CYAA5 50S ribosomal protein L29 OS=Cyanothece sp. (strain ATCC 51142)
GN=rpmC PE=3 SV=1
Length = 78
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKREREL 127
++E+R + EE+ EE++ K ELF LR Q++ R + EF+ R R+A++LT++RER+L
Sbjct: 6 IEEVRQLSDEELAEEIIATKRELFDLRFQQATRQLENTHEFKHTRHRMAQLLTIERERQL 65
Query: 128 EEGINK 133
IN+
Sbjct: 66 --NINQ 69
>sp|Q67JV1|RL29_SYMTH 50S ribosomal protein L29 OS=Symbiobacterium thermophilum (strain T
/ IAM 14863) GN=rpmC PE=3 SV=1
Length = 70
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKREREL 127
+KEIR +TEEI +V +LK ELF LR Q +V N ++ R +RR IA+ TV REREL
Sbjct: 3 VKEIREMSTEEIKAKVAELKEELFNLRFQLAVNNLENTARIREVRRAIAQCKTVIREREL 62
>sp|B8HMR2|RL29_CYAP4 50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rpmC PE=3 SV=1
Length = 74
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 38/54 (70%)
Query: 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTV 121
MK++ + E+ +++DLK +LF LRLQK+ R E K +F+ +R ++A+++T+
Sbjct: 6 MKDLLDLSDAEVETQILDLKRQLFQLRLQKATRQEVKPHQFKHLRHQLAQLMTL 59
>sp|Q8DMM4|RL29_THEEB 50S ribosomal protein L29 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rpmC PE=3 SV=1
Length = 70
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 40/58 (68%)
Query: 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
MK++R + +E+++ + +K ELF LR +K+ R E K +F+ +R +A++LT++ ER
Sbjct: 6 MKDLRQLSDQEVSDRIAAIKKELFDLRFKKATRQEVKPHQFKHLRHELAQLLTLENER 63
>sp|O46902|RK29_GUITH 50S ribosomal protein L29, chloroplastic OS=Guillardia theta
GN=rpl29 PE=3 SV=1
Length = 65
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 75 TTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
T +IN+ V+ LK ELF LRLQK+ R E K F++ ++ IA++LT+K ++
Sbjct: 14 TDTDINDTVLKLKKELFELRLQKATRQEIKPHLFKQKKKLIAKLLTIKSKK 64
>sp|B2ITP7|RL29_NOSP7 50S ribosomal protein L29 OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=rpmC PE=3 SV=1
Length = 75
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 70 EIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
E R + E++++E+V +K +LF LRLQK+ R K +FR+ R R+A++LT++ ER
Sbjct: 8 EARELSDEKLSDEIVAIKRQLFQLRLQKATRQLEKPHQFRQARHRLAQLLTLETER 63
>sp|B7K240|RL29_CYAP8 50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 8801)
GN=rpmC PE=3 SV=1
Length = 78
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKREREL 127
+++ R EE+ EE++ K +LF LR QK+ K+ EF+ R R+A+++TV+RER+L
Sbjct: 6 IEDARKLNDEELVEEILAAKRQLFTLRFQKATNRLEKTHEFKHTRHRLAQLMTVERERQL 65
Query: 128 E 128
+
Sbjct: 66 Q 66
>sp|Q49ZG0|RL29_STAS1 50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpmC
PE=3 SV=1
Length = 69
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+G
Sbjct: 64 QG 65
>sp|Q8YPI7|RL29_NOSS1 50S ribosomal protein L29 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rpmC PE=3 SV=1
Length = 74
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
+ E R + E + EE+ +K +LF LRLQK+ R K +FR R R+A++LTV+ ER
Sbjct: 6 ISEARELSDERLVEEITAVKKQLFQLRLQKATRQLDKPHQFRHARHRLAQLLTVEGER 63
>sp|Q3MFB3|RL29_ANAVT 50S ribosomal protein L29 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rpmC PE=3 SV=1
Length = 74
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
+ E R + E + EE+ +K +LF LRLQK+ R K +FR R R+A++LTV+ ER
Sbjct: 6 ISEARELSDERLVEEITAVKKQLFQLRLQKATRQLDKPHQFRHARHRLAQLLTVEGER 63
>sp|A3DJI0|RL29_CLOTH 50S ribosomal protein L29 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=rpmC PE=3 SV=1
Length = 67
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
K+IR K+ EE+ +E+V+LK ELF LR Q + + R +++ IAR+ TV REREL
Sbjct: 4 KDIRKKSQEELQKELVELKAELFKLRFQHATNQLENPMKLRDVKKSIARIKTVLREREL- 62
Query: 129 EGI 131
+GI
Sbjct: 63 KGI 65
>sp|Q65QW3|RL29_MANSM 50S ribosomal protein L29 OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=rpmC PE=3 SV=1
Length = 63
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
+E+RAKT EE+N E+ +L GE F LR+Q + ++ + +++RR IA++ TV E+
Sbjct: 4 QELRAKTVEELNAELANLAGEQFKLRMQAATGQLQQTHQLKQVRRNIAQVKTVLTEK 60
>sp|P73312|RL29_SYNY3 50S ribosomal protein L29 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rpmC PE=3 SV=1
Length = 73
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 77 EEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
EE+ E++ K LF LR Q++ R EF+ R R+A++LTV+RER+LE
Sbjct: 15 EELATEILATKQRLFQLRFQQATRRPENPHEFKHARHRLAQLLTVERERQLE 66
>sp|B0UX21|RL29_HAES2 50S ribosomal protein L29 OS=Haemophilus somnus (strain 2336)
GN=rpmC PE=3 SV=1
Length = 63
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
+E+R KT EE+N E+V+L GE F LR+Q + ++ + +++RR IA++ TV E+
Sbjct: 4 QELRTKTVEELNAELVNLLGEQFKLRMQAATGQLQQTHQLKQVRRSIAQVKTVLTEK 60
>sp|Q0I155|RL29_HAES1 50S ribosomal protein L29 OS=Haemophilus somnus (strain 129Pt)
GN=rpmC PE=3 SV=1
Length = 63
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
+E+R KT EE+N E+V+L GE F LR+Q + ++ + +++RR IA++ TV E+
Sbjct: 4 QELRTKTVEELNAELVNLLGEQFKLRMQAATGQLQQTHQLKQVRRSIAQVKTVLTEK 60
>sp|Q4L8A6|RL29_STAHJ 50S ribosomal protein L29 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpmC PE=3 SV=1
Length = 69
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
E
Sbjct: 64 ES 65
>sp|A4IJJ7|RL29_GEOTN 50S ribosomal protein L29 OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=rpmC PE=3 SV=1
Length = 66
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKREREL 127
KEIR TT EI +++ LK ELF LR Q + ++ R++R+ IARM T+ REREL
Sbjct: 4 KEIRDLTTAEIEQKIKSLKEELFNLRFQLATGQLENTARIRQVRKDIARMKTIIREREL 62
>sp|Q6KI47|RL29_MYCMO 50S ribosomal protein L29 OS=Mycoplasma mobile (strain ATCC 43663 /
163K / NCTC 11711) GN=rpmC PE=3 SV=1
Length = 84
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKREREL- 127
K+I+ K+T E+N+ +V+LK ELF+LR + + ++ + + +R+ +A++LT +E+++
Sbjct: 4 KDIKNKSTTELNDLIVELKAELFLLRFKNKTSQQEQTHKIQVVRKDVAKVLTALKEKQIL 63
Query: 128 --EEGINK 133
+E INK
Sbjct: 64 GEKELINK 71
>sp|P04457|RL29_GEOSE 50S ribosomal protein L29 OS=Geobacillus stearothermophilus GN=rpmC
PE=1 SV=1
Length = 66
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKREREL 127
KEIR TT EI +++ LK ELF LR Q + ++ R++R+ IARM T+ REREL
Sbjct: 4 KEIRELTTAEIEQKIKALKEELFNLRFQLATGQLENTARIRQVRKDIARMKTIIREREL 62
>sp|Q5L415|RL29_GEOKA 50S ribosomal protein L29 OS=Geobacillus kaustophilus (strain
HTA426) GN=rpmC PE=3 SV=1
Length = 66
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKREREL 127
KEIR TT EI +++ LK ELF LR Q + ++ R++R+ IARM T+ REREL
Sbjct: 4 KEIRELTTAEIEQKIKALKEELFNLRFQLATGQLENTARIRQVRKDIARMKTIIREREL 62
>sp|P66175|RL29_STAES 50S ribosomal protein L29 OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|Q5HM07|RL29_STAEQ 50S ribosomal protein L29 OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|B9DM39|RL29_STACT 50S ribosomal protein L29 OS=Staphylococcus carnosus (strain TM300)
GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|P66174|RL29_STAAW 50S ribosomal protein L29 OS=Staphylococcus aureus (strain MW2)
GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|A8Z349|RL29_STAAT 50S ribosomal protein L29 OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|Q6G779|RL29_STAAS 50S ribosomal protein L29 OS=Staphylococcus aureus (strain MSSA476)
GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|Q6GEJ1|RL29_STAAR 50S ribosomal protein L29 OS=Staphylococcus aureus (strain MRSA252)
GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|P66173|RL29_STAAN 50S ribosomal protein L29 OS=Staphylococcus aureus (strain N315)
GN=rpmC PE=1 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|P66172|RL29_STAAM 50S ribosomal protein L29 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|Q5HDW6|RL29_STAAC 50S ribosomal protein L29 OS=Staphylococcus aureus (strain COL)
GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|Q2YYN0|RL29_STAAB 50S ribosomal protein L29 OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|A5IV26|RL29_STAA9 50S ribosomal protein L29 OS=Staphylococcus aureus (strain JH9)
GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|Q2FW14|RL29_STAA8 50S ribosomal protein L29 OS=Staphylococcus aureus (strain NCTC
8325) GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|A6U3W7|RL29_STAA2 50S ribosomal protein L29 OS=Staphylococcus aureus (strain JH1)
GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|A7X5F2|RL29_STAA1 50S ribosomal protein L29 OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=rpmC PE=3 SV=1
Length = 69
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
KEIR TT EI E++ K ELF LR Q + +++ R +R+ IAR+ TV RERE+E
Sbjct: 4 KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63
Query: 129 EG 130
+
Sbjct: 64 QS 65
>sp|B0C1E1|RL29_ACAM1 50S ribosomal protein L29 OS=Acaryochloris marina (strain MBIC
11017) GN=rpmC PE=3 SV=1
Length = 64
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 39/58 (67%)
Query: 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
M +++ + +EI+ +V +LK ELF LR QK+ + + F+ +R IA++LT+K+++
Sbjct: 6 MADLKNLSVDEIDAKVQELKKELFDLRFQKATKETIQPHRFKHIRHEIAQLLTLKQQQ 63
>sp|P55840|RL29_AGGAC 50S ribosomal protein L29 OS=Aggregatibacter actinomycetemcomitans
GN=rpmC PE=3 SV=1
Length = 63
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
+E+R K+ EE+N E+V+L GE F LR+Q + ++ + +++RR IA++ TV E+
Sbjct: 4 QELRTKSVEELNAELVNLLGEQFKLRMQAATGQLQQTHQLKQVRRSIAQIKTVLTEK 60
>sp|Q110B5|RL29_TRIEI 50S ribosomal protein L29 OS=Trichodesmium erythraeum (strain
IMS101) GN=rpmC PE=3 SV=1
Length = 82
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKREREL 127
+ E+R + EEI E+ +K ELF LR+ K+ K+ F+ R R+A++LT+++EREL
Sbjct: 6 IAEVRELSDEEIANEIAKVKRELFDLRILKATGRIEKTHLFKHNRHRLAQLLTIEKEREL 65
>sp|Q9CL39|RL29_PASMU 50S ribosomal protein L29 OS=Pasteurella multocida (strain Pm70)
GN=rpmC PE=3 SV=1
Length = 63
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
+E+R K+ EE+N E+V+L GE F LR+Q + ++ + +++RR IA++ TV E+
Sbjct: 4 QELRTKSVEELNAELVNLLGEQFKLRMQAATGQLQQTHQLKQVRRSIAQVKTVLTEK 60
>sp|C0QQN1|RL29_PERMH 50S ribosomal protein L29 OS=Persephonella marina (strain DSM 14350
/ EX-H1) GN=rpmC PE=3 SV=1
Length = 68
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 70 EIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKREREL 127
E+R T +E+ +++ +LK +L LR Q +V K SE + +R IAR+LT+ REREL
Sbjct: 5 ELRKLTDDELKDKLTELKKKLMNLRFQNAVGGLEKPSEIKATKRDIARILTILREREL 62
>sp|Q11HR0|RL29_MESSB 50S ribosomal protein L29 OS=Mesorhizobium sp. (strain BNC1)
GN=rpmC PE=3 SV=1
Length = 66
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 70 EIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125
++RA TT+++++E+ +LK E F LR QK+ K++ +++RR IAR+ T+ E+
Sbjct: 5 DVRAMTTDQLDDELANLKKEQFNLRFQKATGQLEKTARVKQIRRDIARIKTIAAEK 60
>sp|Q6B8W1|RK29_GRATL 50S ribosomal protein L29, chloroplastic OS=Gracilaria
tenuistipitata var. liui GN=rpl29 PE=3 SV=1
Length = 66
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 41/57 (71%)
Query: 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRE 124
+++I+ T +EI E+++ LK E+F L+L+++ R +S F+ + ++A++LT+K++
Sbjct: 6 IQDIQDFTDKEIEEKIIKLKKEIFDLKLKQATRQNVRSHLFKHKKHQLAQLLTIKKD 62
>sp|C5D3S5|RL29_GEOSW 50S ribosomal protein L29 OS=Geobacillus sp. (strain WCH70) GN=rpmC
PE=3 SV=1
Length = 68
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKREREL 127
KEIR TT EI +++ LK ELF LR Q + ++ R++R+ IARM T+ RERE+
Sbjct: 4 KEIRELTTAEIEQKIKALKEELFNLRFQLATGQLENTARIRQVRKDIARMKTIIREREI 62
>sp|P66165|RL29_BRUSU 50S ribosomal protein L29 OS=Brucella suis biovar 1 (strain 1330)
GN=rpmC PE=3 SV=1
Length = 66
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 70 EIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
++RAK+ +++N+E+ LK E F LR QK+ K++ +++RR IAR+ T+ R++ E
Sbjct: 5 DVRAKSLDQLNDELGTLKKEQFNLRFQKATGQLEKTARVKQVRRDIARIKTIARQKAAE 63
>sp|B0CH24|RL29_BRUSI 50S ribosomal protein L29 OS=Brucella suis (strain ATCC 23445 /
NCTC 10510) GN=rpmC PE=3 SV=1
Length = 66
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 70 EIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
++RAK+ +++N+E+ LK E F LR QK+ K++ +++RR IAR+ T+ R++ E
Sbjct: 5 DVRAKSLDQLNDELGTLKKEQFNLRFQKATGQLEKTARVKQVRRDIARIKTIARQKAAE 63
>sp|A5VQZ8|RL29_BRUO2 50S ribosomal protein L29 OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rpmC PE=3 SV=1
Length = 66
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 70 EIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
++RAK+ +++N+E+ LK E F LR QK+ K++ +++RR IAR+ T+ R++ E
Sbjct: 5 DVRAKSLDQLNDELGTLKKEQFNLRFQKATGQLEKTARVKQVRRDIARIKTIARQKAAE 63
>sp|P66164|RL29_BRUME 50S ribosomal protein L29 OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rpmC PE=3 SV=1
Length = 66
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 70 EIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
++RAK+ +++N+E+ LK E F LR QK+ K++ +++RR IAR+ T+ R++ E
Sbjct: 5 DVRAKSLDQLNDELGTLKKEQFNLRFQKATGQLEKTARVKQVRRDIARIKTIARQKAAE 63
>sp|C0RJJ3|RL29_BRUMB 50S ribosomal protein L29 OS=Brucella melitensis biotype 2 (strain
ATCC 23457) GN=rpmC PE=3 SV=1
Length = 66
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 70 EIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128
++RAK+ +++N+E+ LK E F LR QK+ K++ +++RR IAR+ T+ R++ E
Sbjct: 5 DVRAKSLDQLNDELGTLKKEQFNLRFQKATGQLEKTARVKQVRRDIARIKTIARQKAAE 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.126 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,882,971
Number of Sequences: 539616
Number of extensions: 1840293
Number of successful extensions: 9429
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 8563
Number of HSP's gapped (non-prelim): 991
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)