Query 030809
Match_columns 171
No_of_seqs 176 out of 1093
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:53:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00154 rpl29 ribosomal prote 99.9 6.8E-23 1.5E-27 145.3 8.6 62 66-127 4-65 (67)
2 PRK14549 50S ribosomal protein 99.9 1.6E-22 3.5E-27 143.6 8.7 67 61-129 1-68 (69)
3 COG0255 RpmC Ribosomal protein 99.9 3.2E-22 7E-27 143.0 8.4 62 69-130 6-67 (69)
4 PRK00461 rpmC 50S ribosomal pr 99.9 1.1E-21 2.4E-26 145.5 9.3 75 67-141 1-75 (87)
5 PRK00306 50S ribosomal protein 99.9 1.5E-21 3.2E-26 136.7 8.5 64 66-129 1-64 (66)
6 PF00831 Ribosomal_L29: Riboso 99.9 2.1E-21 4.6E-26 133.1 7.3 58 68-125 1-58 (58)
7 cd00427 Ribosomal_L29_HIP Ribo 99.8 1.7E-20 3.8E-25 128.0 6.6 57 69-125 1-57 (57)
8 TIGR00012 L29 ribosomal protei 99.8 3.2E-20 7E-25 126.2 6.5 55 70-124 1-55 (55)
9 KOG3436 60S ribosomal protein 99.8 3.5E-18 7.7E-23 133.5 10.0 97 61-160 1-107 (123)
10 PF06984 MRP-L47: Mitochondria 96.4 0.011 2.5E-07 44.1 5.9 62 64-125 21-87 (87)
11 KOG3331 Mitochondrial/chloropl 94.5 0.23 5E-06 42.6 8.0 65 66-130 66-135 (213)
12 PRK00247 putative inner membra 79.5 18 0.0004 34.0 9.7 79 68-147 283-361 (429)
13 PF10226 DUF2216: Uncharacteri 68.4 70 0.0015 27.5 9.7 73 66-145 8-97 (195)
14 PF06698 DUF1192: Protein of u 66.3 7.3 0.00016 27.4 2.9 30 69-98 16-45 (59)
15 COG5493 Uncharacterized conser 59.3 19 0.00042 31.4 4.8 60 72-131 44-113 (231)
16 PF10655 DUF2482: Hypothetical 51.9 15 0.00033 28.4 2.7 28 69-96 3-30 (100)
17 KOG0971 Microtubule-associated 50.2 2.5E+02 0.0054 29.9 11.5 42 50-99 208-249 (1243)
18 PRK11546 zraP zinc resistance 49.2 1.2E+02 0.0026 24.7 7.6 51 77-127 57-110 (143)
19 PF10944 DUF2630: Protein of u 48.2 1.1E+02 0.0023 23.0 6.6 55 74-128 1-58 (81)
20 PF10044 Ret_tiss: Retinal tis 47.8 27 0.00058 26.7 3.5 32 67-98 51-82 (95)
21 PF08700 Vps51: Vps51/Vps67; 46.4 55 0.0012 22.7 4.7 58 67-125 20-77 (87)
22 COG2433 Uncharacterized conser 44.0 1.3E+02 0.0028 30.1 8.3 72 77-148 439-516 (652)
23 PF07106 TBPIP: Tat binding pr 43.2 1.7E+02 0.0036 23.2 7.6 49 76-124 81-134 (169)
24 COG4942 Membrane-bound metallo 42.6 2.5E+02 0.0054 26.7 9.6 80 78-163 63-143 (420)
25 smart00540 LEM in nuclear memb 42.6 16 0.00035 24.2 1.4 17 70-86 2-18 (44)
26 PF04420 CHD5: CHD5-like prote 41.2 1.6E+02 0.0034 23.6 7.2 52 77-128 36-88 (161)
27 PF03962 Mnd1: Mnd1 family; I 40.9 94 0.002 25.7 6.0 18 106-123 110-127 (188)
28 TIGR01639 P_fal_TIGR01639 Plas 38.0 27 0.00058 24.0 2.0 22 67-88 2-24 (61)
29 PF15290 Syntaphilin: Golgi-lo 35.0 38 0.00082 30.9 2.9 48 77-124 85-135 (305)
30 PF08188 Protamine_3: Spermato 30.3 1.4E+02 0.003 20.1 4.4 43 105-155 4-46 (48)
31 PF08312 cwf21: cwf21 domain; 27.4 88 0.0019 20.7 3.0 21 72-92 23-43 (46)
32 PRK11546 zraP zinc resistance 26.3 1E+02 0.0022 25.1 3.8 22 77-98 92-113 (143)
33 PF10845 DUF2576: Protein of u 25.6 1.1E+02 0.0025 20.8 3.3 28 73-100 10-37 (48)
34 smart00787 Spc7 Spc7 kinetocho 25.2 5E+02 0.011 23.3 9.0 51 76-126 174-224 (312)
35 PLN02281 chlorophyllide a oxyg 24.9 1.3E+02 0.0028 29.4 4.8 53 74-130 121-173 (536)
36 PF10769 DUF2594: Protein of u 24.7 84 0.0018 23.3 2.8 50 74-123 10-73 (74)
37 PF10498 IFT57: Intra-flagella 24.4 3E+02 0.0065 25.3 6.9 56 75-130 295-352 (359)
38 PF08621 RPAP1_N: RPAP1-like, 23.6 82 0.0018 21.2 2.4 23 68-90 9-31 (49)
39 PRK10803 tol-pal system protei 23.5 2.2E+02 0.0047 24.6 5.6 47 72-122 52-98 (263)
40 PF05812 Herpes_BLRF2: Herpesv 23.3 1.4E+02 0.0031 23.7 4.0 43 72-114 1-47 (118)
41 PF14223 UBN2: gag-polypeptide 22.9 1.3E+02 0.0029 21.8 3.6 85 81-165 23-109 (119)
42 PTZ00436 60S ribosomal protein 22.7 4.9E+02 0.011 24.3 7.8 21 77-97 93-113 (357)
43 PRK09413 IS2 repressor TnpA; R 22.7 1.1E+02 0.0024 23.0 3.3 23 110-132 75-97 (121)
44 PF10061 DUF2299: Uncharacteri 22.5 89 0.0019 24.9 2.8 45 53-97 44-90 (138)
45 COG5440 Uncharacterized conser 21.5 1.4E+02 0.0031 25.0 3.8 47 51-97 50-98 (161)
46 PF13292 DXP_synthase_N: 1-deo 21.4 83 0.0018 28.2 2.6 28 67-94 6-33 (270)
47 PRK10613 hypothetical protein; 20.5 1.1E+02 0.0025 22.6 2.7 43 74-118 10-52 (74)
48 PHA03155 hypothetical protein; 20.5 2.3E+02 0.0049 22.6 4.6 29 73-101 7-35 (115)
49 PRK10515 hypothetical protein; 20.5 4E+02 0.0087 20.4 6.2 56 67-130 4-59 (90)
50 PRK03954 ribonuclease P protei 20.1 2.5E+02 0.0053 22.2 4.8 40 117-156 21-63 (121)
51 PF11629 Mst1_SARAH: C termina 20.1 1.4E+02 0.0031 20.4 3.0 20 69-88 3-22 (49)
No 1
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=99.89 E-value=6.8e-23 Score=145.26 Aligned_cols=62 Identities=37% Similarity=0.579 Sum_probs=60.5
Q ss_pred cChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHH
Q 030809 66 EEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKREREL 127 (171)
Q Consensus 66 mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel 127 (171)
|+++|||+||.+||.++|.++++|||+||||+++||++|||+|+.+|||||||+||++||..
T Consensus 4 mk~~elr~ls~~eL~~~l~elk~elf~LRfq~atgql~n~~~ir~~RrdIARikTil~ek~~ 65 (67)
T CHL00154 4 PKITDIIDLTDSEISEEIIKTKKELFDLRLKKATRQNFKPHLFKHKKHRLAQLLTLLSSRLK 65 (67)
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999863
No 2
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=99.88 E-value=1.6e-22 Score=143.60 Aligned_cols=67 Identities=37% Similarity=0.483 Sum_probs=63.6
Q ss_pred ccCCccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhcc-CCCchhHHHHhHHHHHHHHHHHHHHHHh
Q 030809 61 MAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRN-EFKSSEFRRMRRRIARMLTVKRERELEE 129 (171)
Q Consensus 61 MsKr~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgq-leNp~~IR~iRKdIARIlTVLrERel~e 129 (171)
|+. |+++||++||.+||.++|.++++|||+||||+++|+ ++|||+|+.+||+||||+||++|++.++
T Consensus 1 M~~--mk~~elr~ls~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ek~~~~ 68 (69)
T PRK14549 1 MAI--LRASEIREMSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQREKKREA 68 (69)
T ss_pred CCc--CcHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 554 999999999999999999999999999999999999 9999999999999999999999998653
No 3
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.2e-22 Score=143.02 Aligned_cols=62 Identities=48% Similarity=0.677 Sum_probs=59.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhh
Q 030809 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEEG 130 (171)
Q Consensus 69 kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e~ 130 (171)
+|||+||.+||.++|.+|++|||+||||.++||++|||+|+.+|||||||+||++|+++...
T Consensus 6 ~elR~~s~eeL~~~l~eLK~ELf~LR~q~a~g~l~n~~~ir~vRr~IARi~Tv~~E~~~~~~ 67 (69)
T COG0255 6 KELREKSVEELEEELRELKKELFNLRFQLATGQLENPHRIREVRRDIARILTVLREKELEAA 67 (69)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999999999999999999999999999999987543
No 4
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=99.86 E-value=1.1e-21 Score=145.53 Aligned_cols=75 Identities=37% Similarity=0.593 Sum_probs=69.1
Q ss_pred ChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhhhhhHhhhHHHH
Q 030809 67 EMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEEGINKRLSRKLDR 141 (171)
Q Consensus 67 K~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e~~nkr~sRk~~r 141 (171)
+++|||+||.+||.++|.++++|||+||||+++|+++|||+|+.+||+||||+||++|+++++++|+..-....+
T Consensus 1 ~~~elR~lS~eEL~e~L~elkkELf~LR~q~atgql~n~~~ir~iRR~IARilTvl~Ek~~~~~~~~~~~~~~~~ 75 (87)
T PRK00461 1 LFKELRKKSVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNERELEEKENNKEPKKNTK 75 (87)
T ss_pred ChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Confidence 368999999999999999999999999999999999999999999999999999999999999999765544443
No 5
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=99.86 E-value=1.5e-21 Score=136.75 Aligned_cols=64 Identities=45% Similarity=0.634 Sum_probs=61.9
Q ss_pred cChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHh
Q 030809 66 EEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEE 129 (171)
Q Consensus 66 mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e 129 (171)
|+++|||+||.+||.++|.++++|||+|||++++|+++|||.|+.+||+||||+||++||+.+.
T Consensus 1 Mk~~elr~ls~~eL~~~l~~lkkeL~~lR~~~~~~~~~n~~~i~~~rk~IARi~Tvl~er~~~~ 64 (66)
T PRK00306 1 MKAKELRELSVEELNEKLLELKKELFNLRFQKATGQLENTHRLREVRRDIARIKTVLRERELGA 64 (66)
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6899999999999999999999999999999999999999999999999999999999998764
No 6
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=99.85 E-value=2.1e-21 Score=133.11 Aligned_cols=58 Identities=47% Similarity=0.654 Sum_probs=56.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHH
Q 030809 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125 (171)
Q Consensus 68 ~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrER 125 (171)
++|||+||.+||.++|.++++|||+||||+++|+++|||.|+.+||+||||+|+++||
T Consensus 1 ~~elr~ls~~eL~~~l~elk~eL~~Lr~q~~~~~l~n~~~ir~~Rr~IARi~Tvl~er 58 (58)
T PF00831_consen 1 AKELRELSDEELQEKLEELKKELFNLRFQKATGQLENPHRIREIRRDIARILTVLRER 58 (58)
T ss_dssp CHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999999999999999999999999999999999999997
No 7
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=99.82 E-value=1.7e-20 Score=128.04 Aligned_cols=57 Identities=42% Similarity=0.619 Sum_probs=55.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHH
Q 030809 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125 (171)
Q Consensus 69 kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrER 125 (171)
+|||+||.+||.++|.++++|||+||||+++|+++|||+|+.+||+||||+||++||
T Consensus 1 ~eir~ls~~eL~~~l~~l~~elf~Lr~q~~~~~~~~~~~~~~~Rr~IARi~Til~er 57 (57)
T cd00427 1 KELREKSDEELQEKLDELKKELFNLRFQKATGQLENPHRIRKVRKDIARIKTVLNEK 57 (57)
T ss_pred ChHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCcCcHHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999999999999999999999999999985
No 8
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=99.81 E-value=3.2e-20 Score=126.23 Aligned_cols=55 Identities=47% Similarity=0.681 Sum_probs=53.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHH
Q 030809 70 EIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRE 124 (171)
Q Consensus 70 ELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrE 124 (171)
|||+||.+||.++|.++++|||+||||+++|+++|||+|+.+||+||||+||++|
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~~~~~~~~~~~~i~~~Rk~IARi~Tvl~e 55 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQKATGQLAKPHRIRQVRRDIARLLTVLRE 55 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999999999999999999999999985
No 9
>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3.5e-18 Score=133.54 Aligned_cols=97 Identities=35% Similarity=0.422 Sum_probs=90.5
Q ss_pred ccCCccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccC-CCchhHHHHhHHHHHHHHHHHHHHHHhhhh-------
Q 030809 61 MAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNE-FKSSEFRRMRRRIARMLTVKRERELEEGIN------- 132 (171)
Q Consensus 61 MsKr~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgql-eNp~~IR~iRKdIARIlTVLrERel~e~~n------- 132 (171)
|++ ++..|||+.+.+||.++|+||+.||+.||+++.+|+. ++.+.|+.+||+|||++||+||++.++.+.
T Consensus 1 M~k--ik~~eLr~~~ke~L~~ql~dLK~ELa~LRv~K~tgg~~~klskik~vrKsiArvLTVine~~k~~lr~~yk~~k~ 78 (123)
T KOG3436|consen 1 MAK--IKARELRGKSKEQLLKQLDDLKVELAQLRVAKVTGGAASKLSKIKVVRKSIARVLTVINEKQKEELREAYKGKKY 78 (123)
T ss_pred Ccc--hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcccc
Confidence 565 8999999999999999999999999999999999984 689999999999999999999999999888
Q ss_pred --hHhhhHHHHHHhhhhccCCCCcchhchH
Q 030809 133 --KRLSRKLDRQWKKSIVVRPPPSLKKLQE 160 (171)
Q Consensus 133 --kr~sRk~~r~~K~s~~~~ppp~~~~~~~ 160 (171)
+.+..+..|+|.+.++-. ++||+..++
T Consensus 79 ~p~dLr~KktRa~rr~ltk~-~~slkt~kq 107 (123)
T KOG3436|consen 79 LPKDLRPKKTRAIRRRLTKH-QLSLKTEKQ 107 (123)
T ss_pred cchhhhHHHHHHHHHhcccc-chhHhHHHH
Confidence 799999999999999888 899999883
No 10
>PF06984 MRP-L47: Mitochondrial 39-S ribosomal protein L47 (MRP-L47); InterPro: IPR010729 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005761 mitochondrial ribosome
Probab=96.35 E-value=0.011 Score=44.11 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=43.9
Q ss_pred CccChHHHhcCCHHHHHHH---HHHHHHHHHHhHHHH--hhccCCCchhHHHHhHHHHHHHHHHHHH
Q 030809 64 REEEMKEIRAKTTEEINEE---VVDLKGELFMLRLQK--SVRNEFKSSEFRRMRRRIARMLTVKRER 125 (171)
Q Consensus 64 r~mK~kELR~LS~eEL~ek---L~ELKkELf~LRfQk--atgqleNp~~IR~iRKdIARIlTVLrER 125 (171)
|.=.+.|||.+|.+||.+. +..-+.-|.-.+... ......++.++..+|+.-+||++||+||
T Consensus 21 R~Wt~~ELR~KS~eDLHkLWyv~lKERN~L~T~~~e~~r~~~~~~~~~r~~kV~~sM~~Ik~Vl~ER 87 (87)
T PF06984_consen 21 RAWTAEELRRKSFEDLHKLWYVCLKERNMLLTEEYEARRQGEGMPSPERLEKVRKSMARIKHVLTER 87 (87)
T ss_pred CcccHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhcC
Confidence 4678999999999999984 222233332112111 1122689999999999999999999986
No 11
>KOG3331 consensus Mitochondrial/chloroplast ribosomal protein L4/L29 [Translation, ribosomal structure and biogenesis]
Probab=94.48 E-value=0.23 Score=42.60 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=51.7
Q ss_pred cChHHHhcCCHHHHHHHHHHHH---HHHHHhHHH--HhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhh
Q 030809 66 EEMKEIRAKTTEEINEEVVDLK---GELFMLRLQ--KSVRNEFKSSEFRRMRRRIARMLTVKRERELEEG 130 (171)
Q Consensus 66 mK~kELR~LS~eEL~ekL~ELK---kELf~LRfQ--katgqleNp~~IR~iRKdIARIlTVLrERel~e~ 130 (171)
-.+.|||=+|..||...-=.+- .-|+..|-. ...++..||-+|-.+|+...||.+|++||+++.-
T Consensus 66 W~aeELR~KS~nDLH~LWYvcLkErNmL~T~~~~~k~~~~~~PnpERi~kV~~TM~~I~~Vl~ER~~Ay~ 135 (213)
T KOG3331|consen 66 WSAEELRLKSFNDLHKLWYVCLKERNMLATMRHELKNIVGSFPNPERIDKVRTTMWRIEHVLNERNLAYS 135 (213)
T ss_pred cchHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999998754443 334444433 3457789999999999999999999999998764
No 12
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=79.50 E-value=18 Score=33.98 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=54.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHhhhh
Q 030809 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEEGINKRLSRKLDRQWKKSI 147 (171)
Q Consensus 68 ~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e~~nkr~sRk~~r~~K~s~ 147 (171)
..+.+........++..+.+.-+..+|-.. .+.+-+|.++..++++++.++-.-+++..+++..|+.-+...|+-.+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~~~ 361 (429)
T PRK00247 283 FKEHHAEQRAQYREKQKEKKAFLWTLRRNR-LRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREI 361 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666666553 3568999999999999999998888887777666655554444444433
No 13
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=68.44 E-value=70 Score=27.52 Aligned_cols=73 Identities=19% Similarity=0.350 Sum_probs=50.4
Q ss_pred cChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHH-HH-----hhhh-------
Q 030809 66 EEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERE-LE-----EGIN------- 132 (171)
Q Consensus 66 mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERe-l~-----e~~n------- 132 (171)
|.-.||...+.+||...|.....|-+.+=++++. .++.+-|.+-.-++.|+.-+ .. +..+
T Consensus 8 ~sDeell~~skeel~~rLR~~E~ek~~~m~~~g~-------lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCF 80 (195)
T PF10226_consen 8 VSDEELLRWSKEELVRRLRRAEAEKMSLMVEHGR-------LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCF 80 (195)
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7788999999999999999999998888887762 44555555555555544422 11 1111
Q ss_pred ----hHhhhHHHHHHhh
Q 030809 133 ----KRLSRKLDRQWKK 145 (171)
Q Consensus 133 ----kr~sRk~~r~~K~ 145 (171)
.+..||+.|.|-+
T Consensus 81 LDddRqKgrklarEWQr 97 (195)
T PF10226_consen 81 LDDDRQKGRKLAREWQR 97 (195)
T ss_pred cchhHHHhHHHhHHHHH
Confidence 4888899999843
No 14
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=66.27 E-value=7.3 Score=27.38 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=24.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhHHHHh
Q 030809 69 KEIRAKTTEEINEEVVDLKGELFMLRLQKS 98 (171)
Q Consensus 69 kELR~LS~eEL~ekL~ELKkELf~LRfQka 98 (171)
+||-.||.+||.+.|.-|+.|.-.++-...
T Consensus 16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 16 EDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred CCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999988777665543
No 15
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=59.32 E-value=19 Score=31.42 Aligned_cols=60 Identities=28% Similarity=0.403 Sum_probs=43.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHH----hHHHHhhccC------CCchhHHHHhHHHHHHHHHHHHHHHHhhh
Q 030809 72 RAKTTEEINEEVVDLKGELFM----LRLQKSVRNE------FKSSEFRRMRRRIARMLTVKRERELEEGI 131 (171)
Q Consensus 72 R~LS~eEL~ekL~ELKkELf~----LRfQkatgql------eNp~~IR~iRKdIARIlTVLrERel~e~~ 131 (171)
..-+.+||.+++...+++|-+ -|+|+++.+- +....|+.++++|-|+.|+++--....++
T Consensus 44 tk~dve~l~~e~E~~~k~l~de~~E~r~~~~tke~lk~l~~~~~~~f~a~~edi~rlE~~i~~lgaRwGi 113 (231)
T COG5493 44 TKQDVEELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQEEEFRATKEDIKRLETIITGLGARWGI 113 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345678888888888777775 7777777542 33667899999999999998865544443
No 16
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=51.93 E-value=15 Score=28.44 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhHHH
Q 030809 69 KEIRAKTTEEINEEVVDLKGELFMLRLQ 96 (171)
Q Consensus 69 kELR~LS~eEL~ekL~ELKkELf~LRfQ 96 (171)
+..++|+.+||.+.|.+--.|||+|--.
T Consensus 3 knyKdMTqeelr~llseK~~ELydL~~e 30 (100)
T PF10655_consen 3 KNYKDMTQEELRDLLSEKNGELYDLANE 30 (100)
T ss_pred chhhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 4678999999999999999999999654
No 17
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.16 E-value=2.5e+02 Score=29.94 Aligned_cols=42 Identities=33% Similarity=0.394 Sum_probs=32.5
Q ss_pred CCCCCCceeeeccCCccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhh
Q 030809 50 SGSRGSSAVVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSV 99 (171)
Q Consensus 50 ~~~~~~~~~v~MsKr~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkat 99 (171)
|....+.++|..+-. .++..||..++.+|.++|--||.+.+-
T Consensus 208 P~~Tta~a~v~l~sa--------skte~eLr~QvrdLtEkLetlR~kR~E 249 (1243)
T KOG0971|consen 208 PVLTTAGAVVPLPSA--------SKTEEELRAQVRDLTEKLETLRLKRAE 249 (1243)
T ss_pred CCCCCccccCCCCcc--------ccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344556666666641 677888999999999999999999873
No 18
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.19 E-value=1.2e+02 Score=24.67 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHh---hccCCCchhHHHHhHHHHHHHHHHHHHHH
Q 030809 77 EEINEEVVDLKGELFMLRLQKS---VRNEFKSSEFRRMRRRIARMLTVKREREL 127 (171)
Q Consensus 77 eEL~ekL~ELKkELf~LRfQka---tgqleNp~~IR~iRKdIARIlTVLrERel 127 (171)
++...+..+||.+|+.-|.... .+.-.++..|+.+.++|..+.+-|.++..
T Consensus 57 ~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 57 NDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666655554442 24446778899999999999998887654
No 19
>PF10944 DUF2630: Protein of unknown function (DUF2630); InterPro: IPR020311 This entry contains proteins with no known function.
Probab=48.21 E-value=1.1e+02 Score=23.04 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHhhccC---CCchhHHHHhHHHHHHHHHHHHHHHH
Q 030809 74 KTTEEINEEVVDLKGELFMLRLQKSVRNE---FKSSEFRRMRRRIARMLTVKRERELE 128 (171)
Q Consensus 74 LS~eEL~ekL~ELKkELf~LRfQkatgql---eNp~~IR~iRKdIARIlTVLrERel~ 128 (171)
|++.++...|.+|=.|=-.||-+...|.. +...+++.+-..+-+.=-+||+|...
T Consensus 1 M~d~~Il~rI~~LV~EE~~LR~~~~~g~~~~~~e~~RL~~lE~~LDQCWDLLRqRRA~ 58 (81)
T PF10944_consen 1 MDDQDILARINELVAEEHELRSRLQAGEIDSDEEHARLRQLEVELDQCWDLLRQRRAR 58 (81)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999888876 44567788888888888888888753
No 20
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=47.83 E-value=27 Score=26.66 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=28.4
Q ss_pred ChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHh
Q 030809 67 EMKEIRAKTTEEINEEVVDLKGELFMLRLQKS 98 (171)
Q Consensus 67 K~kELR~LS~eEL~ekL~ELKkELf~LRfQka 98 (171)
++.+|..|+.++|.+++.+|..+.++|=+.-+
T Consensus 51 ~~~eLs~Lt~~~L~~~Ik~L~~~aYqLGl~Ea 82 (95)
T PF10044_consen 51 KMNELSSLTPDQLIEKIKKLQDEAYQLGLEEA 82 (95)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 57789999999999999999999999876654
No 21
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=46.40 E-value=55 Score=22.69 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=39.7
Q ss_pred ChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHH
Q 030809 67 EMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRER 125 (171)
Q Consensus 67 K~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrER 125 (171)
.+.+|+.+. ..|..++.+...+|-.+-+.+-..=+.-...|..++.++-.|.+.+.+-
T Consensus 20 s~~~i~~~~-~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l 77 (87)
T PF08700_consen 20 SIKEIRQLE-NKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSEL 77 (87)
T ss_pred CHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 6666777777777777777776555566777788888877777776653
No 22
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.00 E-value=1.3e+02 Score=30.12 Aligned_cols=72 Identities=25% Similarity=0.250 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHh-----h-ccCCCchhHHHHhHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHhhhhc
Q 030809 77 EEINEEVVDLKGELFMLRLQKS-----V-RNEFKSSEFRRMRRRIARMLTVKRERELEEGINKRLSRKLDRQWKKSIV 148 (171)
Q Consensus 77 eEL~ekL~ELKkELf~LRfQka-----t-gqleNp~~IR~iRKdIARIlTVLrERel~e~~nkr~sRk~~r~~K~s~~ 148 (171)
.+|..++.++++++.+|+-+.. . ...-....++...+.|.++.+-|.+....-..-++....+.+-|+-.+.
T Consensus 439 ~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~s 516 (652)
T COG2433 439 SELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELS 516 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3444444444444444433221 1 2335567788888999999998888765554445555555555664433
No 23
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.16 E-value=1.7e+02 Score=23.19 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhh--ccCCC---chhHHHHhHHHHHHHHHHHH
Q 030809 76 TEEINEEVVDLKGELFMLRLQKSV--RNEFK---SSEFRRMRRRIARMLTVKRE 124 (171)
Q Consensus 76 ~eEL~ekL~ELKkELf~LRfQkat--gqleN---p~~IR~iRKdIARIlTVLrE 124 (171)
..+|.+++.+++.+.-.|+-.... ..+.+ ...|..++.+|..+..-|..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888877777655542 22222 34555566666665555544
No 24
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=42.65 E-value=2.5e+02 Score=26.72 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHh-hhhhHhhhHHHHHHhhhhccCCCCcch
Q 030809 78 EINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEE-GINKRLSRKLDRQWKKSIVVRPPPSLK 156 (171)
Q Consensus 78 EL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e-~~nkr~sRk~~r~~K~s~~~~ppp~~~ 156 (171)
.|+.+|.+++.++-.+.-+.. +--..+..++++|+.+..-+..-+.++ ..-.++++-++ |=...--.|||.|.
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~----~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~--A~~r~g~~p~~~ll 136 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLI----ETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLA--ALQRSGRNPPPALL 136 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCCCchhh
Confidence 344444444444444443332 223567778888888877766654443 11112232222 22223345899998
Q ss_pred hchHHHH
Q 030809 157 KLQEEEA 163 (171)
Q Consensus 157 ~~~~~~~ 163 (171)
-..|+-.
T Consensus 137 ~~~eda~ 143 (420)
T COG4942 137 VSPEDAQ 143 (420)
T ss_pred cChhhhh
Confidence 8877744
No 25
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=42.58 E-value=16 Score=24.17 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=13.8
Q ss_pred HHhcCCHHHHHHHHHHH
Q 030809 70 EIRAKTTEEINEEVVDL 86 (171)
Q Consensus 70 ELR~LS~eEL~ekL~EL 86 (171)
|+..||++||..+|.++
T Consensus 2 d~~~LSd~eL~~~L~~~ 18 (44)
T smart00540 2 DVDRLSDAELRAELKQY 18 (44)
T ss_pred chhHcCHHHHHHHHHHc
Confidence 68899999998887653
No 26
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=41.16 E-value=1.6e+02 Score=23.63 Aligned_cols=52 Identities=10% Similarity=0.240 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-hhccCCCchhHHHHhHHHHHHHHHHHHHHHH
Q 030809 77 EEINEEVVDLKGELFMLRLQK-SVRNEFKSSEFRRMRRRIARMLTVKRERELE 128 (171)
Q Consensus 77 eEL~ekL~ELKkELf~LRfQk-atgqleNp~~IR~iRKdIARIlTVLrERel~ 128 (171)
....++..+|++|+.+++-+. +++..++-.+--+++|.+..+...+.+.+.+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666766666655 4577789999999999999998887765543
No 27
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.86 E-value=94 Score=25.72 Aligned_cols=18 Identities=6% Similarity=0.283 Sum_probs=8.4
Q ss_pred hhHHHHhHHHHHHHHHHH
Q 030809 106 SEFRRMRRRIARMLTVKR 123 (171)
Q Consensus 106 ~~IR~iRKdIARIlTVLr 123 (171)
.++..+++.++.+..-+.
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555444443
No 28
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=38.05 E-value=27 Score=24.05 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=18.4
Q ss_pred ChHHH-hcCCHHHHHHHHHHHHH
Q 030809 67 EMKEI-RAKTTEEINEEVVDLKG 88 (171)
Q Consensus 67 K~kEL-R~LS~eEL~ekL~ELKk 88 (171)
+..|| +++|.+||.+.|..|..
T Consensus 2 ~~~Dls~~lTeEEl~~~i~~L~~ 24 (61)
T TIGR01639 2 KYNDLSKKLSKEELNELINSLDE 24 (61)
T ss_pred ChhHHhHHccHHHHHHHHHhhcC
Confidence 45677 79999999999999853
No 29
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.00 E-value=38 Score=30.86 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcc---CCCchhHHHHhHHHHHHHHHHHH
Q 030809 77 EEINEEVVDLKGELFMLRLQKSVRN---EFKSSEFRRMRRRIARMLTVKRE 124 (171)
Q Consensus 77 eEL~ekL~ELKkELf~LRfQkatgq---leNp~~IR~iRKdIARIlTVLrE 124 (171)
.|-..+|++||..|.++|=...-.. ++----+++.||.|-+++-|+--
T Consensus 85 ~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 85 HDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIET 135 (305)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777765543221 24455689999999999887643
No 30
>PF08188 Protamine_3: Spermatozal protamine family; InterPro: IPR012601 This entry consists of the spermatozal protamines. Spermatozal protamines play an important role in remodelling of the sperm chromatin during mammalian spermiogenesis. Nuclear elongation and chromatin condensation are concomitant with modifications in the basic protein complement associated with DNA. Somatic histones are initially replaced by testis-specific histone variants, then by transitional proteins, and ultimately by protamines [].; GO: 0003677 DNA binding, 0035092 sperm chromatin condensation, 0000228 nuclear chromosome
Probab=30.30 E-value=1.4e+02 Score=20.07 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=30.0
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHhhhhccCCCCcc
Q 030809 105 SSEFRRMRRRIARMLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSL 155 (171)
Q Consensus 105 p~~IR~iRKdIARIlTVLrERel~e~~nkr~sRk~~r~~K~s~~~~ppp~~ 155 (171)
-|.++.-|+.+-|-+|--++|+.... +.|..|.--..+-||-+
T Consensus 4 rhsmkkkrksvrrrktrknqrkrkns--------lgrsfkahgflkqpprf 46 (48)
T PF08188_consen 4 RHSMKKKRKSVRRRKTRKNQRKRKNS--------LGRSFKAHGFLKQPPRF 46 (48)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHhhhh--------hhhHHHhcccccCCCCC
Confidence 36678888999999988888775443 44566666666666654
No 31
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=27.37 E-value=88 Score=20.75 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=17.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHH
Q 030809 72 RAKTTEEINEEVVDLKGELFM 92 (171)
Q Consensus 72 R~LS~eEL~ekL~ELKkELf~ 92 (171)
++.+.+++..+++.+|+.|.+
T Consensus 23 ~g~~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 23 QGYSEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HT--HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 577899999999999999875
No 32
>PRK11546 zraP zinc resistance protein; Provisional
Probab=26.34 E-value=1e+02 Score=25.13 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHh
Q 030809 77 EEINEEVVDLKGELFMLRLQKS 98 (171)
Q Consensus 77 eEL~ekL~ELKkELf~LRfQka 98 (171)
..|..+|.+|+.+|+++|++..
T Consensus 92 ~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 92 NAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888887654
No 33
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=25.60 E-value=1.1e+02 Score=20.84 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhHHHHhhc
Q 030809 73 AKTTEEINEEVVDLKGELFMLRLQKSVR 100 (171)
Q Consensus 73 ~LS~eEL~ekL~ELKkELf~LRfQkatg 100 (171)
+.+.++|..+|.+|++.+-+|.-...+|
T Consensus 10 dydreqlrrelnsLR~~vhelctRs~t~ 37 (48)
T PF10845_consen 10 DYDREQLRRELNSLRRSVHELCTRSTTG 37 (48)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4678999999999999999998776544
No 34
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.22 E-value=5e+02 Score=23.28 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHH
Q 030809 76 TEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERE 126 (171)
Q Consensus 76 ~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERe 126 (171)
..+|.++...|+.|+-+|+-...--.--++..++.+|-.|+..+..+..+.
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888887776665555679999999999999988877754
No 35
>PLN02281 chlorophyllide a oxygenase
Probab=24.94 E-value=1.3e+02 Score=29.43 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhh
Q 030809 74 KTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEEG 130 (171)
Q Consensus 74 LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e~ 130 (171)
+|.+-|.++|.+|++||-+..-|--.+ -.++...=..+|.|.|+.|.|-+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (536)
T PLN02281 121 KSIGTVKKELAGLQEELSKAHQQVHIS----EARVSTALDKLAHMEELVNDRLLPGR 173 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHhhhhccCCC
Confidence 577888899999999988776665443 24455555778999999999887643
No 36
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=24.71 E-value=84 Score=23.26 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHH--------------HhHHHHhhccCCCchhHHHHhHHHHHHHHHHH
Q 030809 74 KTTEEINEEVVDLKGELF--------------MLRLQKSVRNEFKSSEFRRMRRRIARMLTVKR 123 (171)
Q Consensus 74 LS~eEL~ekL~ELKkELf--------------~LRfQkatgqleNp~~IR~iRKdIARIlTVLr 123 (171)
-+.++|..++.=||.-|- -+.+.+.+.+++++.+-...+..|.+|+|..|
T Consensus 10 ~~~etLA~EV~CLK~~lT~mLKamGQADAGkviinmEk~ia~~eD~~QAevF~nTi~QIK~aYR 73 (74)
T PF10769_consen 10 ANVETLATEVACLKALLTLMLKAMGQADAGKVIINMEKYIAQMEDPKQAEVFKNTIKQIKTAYR 73 (74)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhc
Confidence 356777777777765442 23334444444555555555555555555443
No 37
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.39 E-value=3e+02 Score=25.26 Aligned_cols=56 Identities=13% Similarity=0.253 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHhhcc--CCCchhHHHHhHHHHHHHHHHHHHHHHhh
Q 030809 75 TTEEINEEVVDLKGELFMLRLQKSVRN--EFKSSEFRRMRRRIARMLTVKRERELEEG 130 (171)
Q Consensus 75 S~eEL~ekL~ELKkELf~LRfQkatgq--leNp~~IR~iRKdIARIlTVLrERel~e~ 130 (171)
+..++..+|.++-.+|-+.+.+..-.+ +.+.+-+-.+|..|.+|++.+++-.+.-|
T Consensus 295 ~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 295 GVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456777777777777777776665433 57777788888888888888887665443
No 38
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=23.60 E-value=82 Score=21.16 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=18.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHH
Q 030809 68 MKEIRAKTTEEINEEVVDLKGEL 90 (171)
Q Consensus 68 ~kELR~LS~eEL~ekL~ELKkEL 90 (171)
..-|.+||.+|+.++-.+|...|
T Consensus 9 ~~rL~~MS~eEI~~er~eL~~~L 31 (49)
T PF08621_consen 9 EARLASMSPEEIEEEREELLESL 31 (49)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC
Confidence 45588999999988887776654
No 39
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.51 E-value=2.2e+02 Score=24.58 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=32.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHH
Q 030809 72 RAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVK 122 (171)
Q Consensus 72 R~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVL 122 (171)
++...-||..+|++|+.|+-+||-+.- ++.+++..+.+.=.-+..-|
T Consensus 52 ~~~~~~~l~~ql~~lq~ev~~LrG~~E----~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 52 HSQLLTQLQQQLSDNQSDIDSLRGQIQ----ENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 445556999999999999999997766 35666666655444333333
No 40
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=23.32 E-value=1.4e+02 Score=23.71 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=27.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhHHHHhhccC----CCchhHHHHhHH
Q 030809 72 RAKTTEEINEEVVDLKGELFMLRLQKSVRNE----FKSSEFRRMRRR 114 (171)
Q Consensus 72 R~LS~eEL~ekL~ELKkELf~LRfQkatgql----eNp~~IR~iRKd 114 (171)
+++|.|||..+|..|+-|=-.|+-+...+.- .++..+..-.|+
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe 47 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKE 47 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHH
Confidence 3678999999999999998888876654432 455554444444
No 41
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=22.85 E-value=1.3e+02 Score=21.79 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHhhhhccCCCC--cchhc
Q 030809 81 EEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPP--SLKKL 158 (171)
Q Consensus 81 ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e~~nkr~sRk~~r~~K~s~~~~ppp--~~~~~ 158 (171)
..+..|+.+|.+++++...+-.+--.+++.+..+++.+-..+.+...-..+-.-+..+++-....=-...+.| ++..+
T Consensus 23 ~~~~~L~~~l~~~k~~~~~sv~~y~~~~~~i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~~~~~i~~~~~~~~~t~~el 102 (119)
T PF14223_consen 23 ARVQQLKSQLENLKMKDGESVDEYISRLKEIVDELRAIGKPISDEDLVSKILRSLPPSYDTFVTAIRNSKDLPKMTLEEL 102 (119)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHhhhhhhhcCCcccchhHHHHHHhcCCchhHHHHHHHHhcCCCCcCCHHHH
Confidence 6778889999998887654333444556666666655555555544444444455544444433333444555 67666
Q ss_pred hHHHHHH
Q 030809 159 QEEEAAA 165 (171)
Q Consensus 159 ~~~~~~~ 165 (171)
...-.+.
T Consensus 103 ~~~L~~~ 109 (119)
T PF14223_consen 103 ISRLLAE 109 (119)
T ss_pred HHHHHHH
Confidence 5443333
No 42
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=22.72 E-value=4.9e+02 Score=24.30 Aligned_cols=21 Identities=24% Similarity=0.045 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 030809 77 EEINEEVVDLKGELFMLRLQK 97 (171)
Q Consensus 77 eEL~ekL~ELKkELf~LRfQk 97 (171)
+.....+.-|+..|-.||=..
T Consensus 93 ~~WIrRIRaLRRlLKklRd~g 113 (357)
T PTZ00436 93 ELWMRRLRILRRLLRKYREEK 113 (357)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 455566666677766666443
No 43
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.65 E-value=1.1e+02 Score=22.99 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=9.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhh
Q 030809 110 RMRRRIARMLTVKRERELEEGIN 132 (171)
Q Consensus 110 ~iRKdIARIlTVLrERel~e~~n 132 (171)
..+..|.++.-.+.+-+.+..+-
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diL 97 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 44
>PF10061 DUF2299: Uncharacterized conserved protein (DUF2299); InterPro: IPR018747 Members of this family of hypothetical bacterial proteins have no known function. ; PDB: 3CXJ_D.
Probab=22.54 E-value=89 Score=24.88 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCCceeeeccCC--ccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHH
Q 030809 53 RGSSAVVMMAKR--EEEMKEIRAKTTEEINEEVVDLKGELFMLRLQK 97 (171)
Q Consensus 53 ~~~~~~v~MsKr--~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQk 97 (171)
....-||+|+=. +--.+.|++|+.+|-.+-+.+++.+|..+-...
T Consensus 44 ~~~~~vi~~~i~v~~~H~~~l~~l~~~eR~~fl~~i~~~ll~~~vd~ 90 (138)
T PF10061_consen 44 KSDFYVIGMGIGVSPEHQRALRSLKPEEREEFLWEIKRELLRMPVDF 90 (138)
T ss_dssp -SSEEEEEEEEE--HHHHHHHHHS-HHHHHHHHHHHHHHHTTTT-EE
T ss_pred CCCEEEEEEEEEECHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCcE
Confidence 347778888731 223456899999999999999999998874443
No 45
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=21.47 E-value=1.4e+02 Score=24.98 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=36.6
Q ss_pred CCCCCceeeeccCC--ccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHH
Q 030809 51 GSRGSSAVVMMAKR--EEEMKEIRAKTTEEINEEVVDLKGELFMLRLQK 97 (171)
Q Consensus 51 ~~~~~~~~v~MsKr--~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQk 97 (171)
..++.+-+|+|+=. ..-..-|+.|+.++-.+-+.+++.+|..+-...
T Consensus 50 ~~~~d~viVA~gi~ls~eH~~al~aL~~e~R~efi~~l~~dLlr~~v~F 98 (161)
T COG5440 50 PRGSDMVIVAIGIALSQEHRRALMALNPEKREEFIWKLRRDLLRLGVDF 98 (161)
T ss_pred CCCCcEEEEEEeeccCHHHHHHHHhcChHHHHHHHHHHHHHHHhcCCce
Confidence 35688999999841 223445889999999999999999999886443
No 46
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=21.43 E-value=83 Score=28.18 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=24.1
Q ss_pred ChHHHhcCCHHHHHHHHHHHHHHHHHhH
Q 030809 67 EMKEIRAKTTEEINEEVVDLKGELFMLR 94 (171)
Q Consensus 67 K~kELR~LS~eEL~ekL~ELKkELf~LR 94 (171)
...||+.||.+||.+.-.|+|+.+.+.-
T Consensus 6 ~p~dlk~ls~~eL~~La~eiR~~ii~~v 33 (270)
T PF13292_consen 6 SPEDLKKLSIEELEQLAQEIREFIIETV 33 (270)
T ss_dssp SHHHHTTS-GGGHHHHHHHHHHHHHHHC
T ss_pred CHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998754
No 47
>PRK10613 hypothetical protein; Provisional
Probab=20.53 E-value=1.1e+02 Score=22.59 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHH
Q 030809 74 KTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARM 118 (171)
Q Consensus 74 LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARI 118 (171)
-+.++|..++.=||.-|- | +-+++||.+--..|-++-|.||+|
T Consensus 10 ~~~~~LA~EV~CLK~llT-l-mLkamGQADAGkVii~mEr~ia~m 52 (74)
T PRK10613 10 ENNQELANEVSCLKAMLT-L-MLKAMGQADAGRVILKMEKQIAQI 52 (74)
T ss_pred cCHHHHHHHHHHHHHHHH-H-HHHHhcccccchHHHHHHHHHHHc
Confidence 356778888777776442 2 234556655555555555555544
No 48
>PHA03155 hypothetical protein; Provisional
Probab=20.52 E-value=2.3e+02 Score=22.60 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 030809 73 AKTTEEINEEVVDLKGELFMLRLQKSVRN 101 (171)
Q Consensus 73 ~LS~eEL~ekL~ELKkELf~LRfQkatgq 101 (171)
+++.|||..+|..|+-|=-.|+-+...+.
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~ 35 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQHG 35 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 89999999999999999888887775443
No 49
>PRK10515 hypothetical protein; Provisional
Probab=20.48 E-value=4e+02 Score=20.41 Aligned_cols=56 Identities=23% Similarity=0.188 Sum_probs=30.8
Q ss_pred ChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhh
Q 030809 67 EMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEEG 130 (171)
Q Consensus 67 K~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e~ 130 (171)
+.=.+.+|+..| -.+++..|-+.|..+. ..|.|. +-..+|++| |.-|..+|+.+..
T Consensus 4 ~~Lt~keMTEse----qrevkt~L~~aR~~~g-R~LTNa-E~NkvK~e~--i~ki~aere~~aK 59 (90)
T PRK10515 4 PRITQKEMTERE----QRELKTLLDRARIAHG-RPLTNS-ETNSIKKEY--IDKLMAEREAEAK 59 (90)
T ss_pred hhHHHHHhhHHH----HHHHHHHHHHHHHHcC-Cccchh-hHhHHHHHH--HHHHHHHHHHHHH
Confidence 334455666544 3456666666666655 556664 445666665 3344456655443
No 50
>PRK03954 ribonuclease P protein component 4; Validated
Probab=20.15 E-value=2.5e+02 Score=22.22 Aligned_cols=40 Identities=18% Similarity=0.073 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhhhHhhhHHH---HHHhhhhccCCCCcch
Q 030809 117 RMLTVKRERELEEGINKRLSRKLD---RQWKKSIVVRPPPSLK 156 (171)
Q Consensus 117 RIlTVLrERel~e~~nkr~sRk~~---r~~K~s~~~~ppp~~~ 156 (171)
||..++..=......|..+||.+. +.--....++.||.+|
T Consensus 21 Ri~~L~~~A~~~~~~~pelar~Yv~lar~Is~K~rirlp~~~K 63 (121)
T PRK03954 21 RIDTLFTLAERVFPYSPELANRYVELALAVQQKAKVKLPRKWK 63 (121)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 444444333222233445555544 2223344556666665
No 51
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.10 E-value=1.4e+02 Score=20.44 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=14.6
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 030809 69 KEIRAKTTEEINEEVVDLKG 88 (171)
Q Consensus 69 kELR~LS~eEL~ekL~ELKk 88 (171)
.=|+.+|.+||+..|..|-.
T Consensus 3 ~fLk~ls~~eL~~rl~~LD~ 22 (49)
T PF11629_consen 3 EFLKFLSYEELQQRLASLDP 22 (49)
T ss_dssp GGGGGS-HHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHhCCH
Confidence 34788999999998887654
Done!