Query 030809
Match_columns 171
No_of_seqs 176 out of 1093
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:21:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_Z Ribosomal protein L29; 100.0 4.3E-56 1.5E-60 361.8 6.2 167 2-170 1-169 (173)
2 1vq8_V 50S ribosomal protein L 99.9 1.8E-24 6.1E-29 153.5 8.0 68 61-130 1-69 (71)
3 3v2d_2 50S ribosomal protein L 99.9 3.4E-24 1.2E-28 152.5 6.4 68 61-128 3-70 (72)
4 3j21_W 50S ribosomal protein L 99.9 1.7E-23 5.7E-28 148.9 9.7 65 66-130 1-66 (72)
5 1r73_A TM1492, 50S ribosomal p 99.9 8.3E-24 2.8E-28 148.1 7.9 63 66-128 1-63 (66)
6 2zjr_V 50S ribosomal protein L 99.9 6.6E-24 2.2E-28 149.0 6.3 64 66-129 1-64 (67)
7 4a17_U RPL35, 60S ribosomal pr 99.9 1.5E-23 5.2E-28 163.0 8.6 88 60-149 1-115 (124)
8 3iz5_c 60S ribosomal protein L 99.9 8.1E-24 2.8E-28 164.5 6.0 72 61-132 1-72 (124)
9 2zkr_v 60S ribosomal protein L 99.9 2.7E-23 9.4E-28 161.3 7.8 86 61-148 1-113 (123)
10 3r8s_Y 50S ribosomal protein L 99.9 6.8E-24 2.3E-28 147.3 2.9 61 66-126 1-61 (63)
11 3u5e_h 60S ribosomal protein L 99.9 3E-22 1E-26 154.9 10.0 85 61-149 1-111 (120)
12 3jyw_X 60S ribosomal protein L 99.8 3.9E-22 1.3E-26 146.7 2.1 66 65-132 2-67 (86)
13 3twe_A Alpha4H; unknown functi 62.6 8.3 0.00029 22.4 3.1 23 76-98 3-25 (27)
14 3i00_A HIP-I, huntingtin-inter 61.1 50 0.0017 24.8 8.6 91 72-169 13-105 (120)
15 3s9g_A Protein hexim1; cyclin 47.0 55 0.0019 24.5 6.2 52 68-121 24-80 (104)
16 3viq_B Mating-type switching p 40.5 1E+02 0.0034 22.2 6.6 50 74-124 1-52 (85)
17 3sja_C Golgi to ER traffic pro 37.1 1E+02 0.0034 21.2 7.1 48 79-126 4-52 (65)
18 3hnw_A Uncharacterized protein 32.8 68 0.0023 24.4 4.9 24 76-99 77-100 (138)
19 1dd4_C 50S ribosomal protein L 32.7 41 0.0014 20.9 3.0 23 68-90 7-29 (40)
20 2l5g_A GPS2 protein, G protein 30.8 31 0.0011 21.7 2.2 24 73-96 7-30 (38)
21 2bzb_A Conserved domain protei 29.7 72 0.0025 21.4 4.1 25 74-98 1-25 (62)
22 2c0s_A Conserved domain protei 27.8 57 0.002 22.0 3.3 33 74-109 1-33 (64)
23 1slq_A VP4; beta sandwich, gre 25.2 62 0.0021 27.8 3.8 29 77-105 245-273 (278)
24 1zav_U 50S ribosomal protein L 24.2 65 0.0022 18.8 2.7 22 68-89 7-28 (30)
25 3ni0_A Bone marrow stromal ant 23.9 86 0.003 23.3 3.9 27 75-101 68-94 (99)
26 1t2k_D Cyclic-AMP-dependent tr 23.0 90 0.0031 20.1 3.5 19 77-95 39-57 (61)
27 3vlc_E Golgi to ER traffic pro 22.5 1.6E+02 0.0054 21.5 5.1 45 81-125 30-75 (94)
28 3sjb_C Golgi to ER traffic pro 22.4 2.3E+02 0.0078 20.6 7.0 50 77-126 19-69 (93)
29 2z5i_A TM, general control pro 21.3 80 0.0027 20.4 2.9 30 68-97 6-35 (52)
30 2oa5_A Hypothetical protein BQ 20.9 77 0.0026 23.9 3.2 42 73-114 7-50 (110)
31 1deb_A APC protein, adenomatou 20.4 2E+02 0.0068 19.1 5.8 45 75-123 4-48 (54)
No 1
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.3e-56 Score=361.84 Aligned_cols=167 Identities=63% Similarity=0.897 Sum_probs=63.8
Q ss_pred ccccccccccccccCCCCC--CCCCCCCccccccccccccccccccccCCCCCCCCceeeeccCCccChHHHhcCCHHHH
Q 030809 2 TMSLSIASTTTITFPTEPF--SKIPKSTFNGVQIRQSWPIRTPLRFATSSSGSRGSSAVVMMAKREEEMKEIRAKTTEEI 79 (171)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~MsKr~mK~kELR~LS~eEL 79 (171)
++||++|+|++.+++|+|+ ++.|+++||||||+|+ +.|++.....-....+.+.||||+|..++++|||+||.+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vmMAK~~~Ka~ELR~lS~eEL 78 (173)
T 3bbo_Z 1 MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQ--VSARVPAAATISSSSPKPSVVMMSKREAELKEIRSKTTEQL 78 (173)
T ss_dssp ---------------------------------------------------------------CCSSCHHHHHHSCHHHH
T ss_pred CcccccCCCcccccCCCccccCCCCcccceeeeecCc--ccccccccccccCCccccchhccccccCCHHHHHhCCHHHH
Confidence 5899999999999999997 4799999999999998 66667322111122479999999986689999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHhhhhccCCCCcchhch
Q 030809 80 NEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 159 (171)
Q Consensus 80 ~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e~~nkr~sRk~~r~~K~s~~~~ppp~~~~~~ 159 (171)
.++|.+|++|||+||||+++||++||++|+.+|||||||+||++||+++++.|+++||+++|+||++++|||||||++||
T Consensus 79 ~ekL~eLKkELFnLRfQkATGQLeNpsrIR~VRRdIARIkTVLrErel~~~~~kr~SRk~~~~~k~s~~~~ppp~~~~~~ 158 (173)
T 3bbo_Z 79 QEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQ 158 (173)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHSCC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhhcccccCCCchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 030809 160 EEEAAAEAEKS 170 (171)
Q Consensus 160 ~~~~~~~~~~~ 170 (171)
|||+|+||+++
T Consensus 159 ~~~~~~~~~~~ 169 (173)
T 3bbo_Z 159 EEEAAEEAAEA 169 (173)
T ss_dssp -----------
T ss_pred hHHHHHHHHhh
Confidence 99999999886
No 2
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=99.91 E-value=1.8e-24 Score=153.46 Aligned_cols=68 Identities=28% Similarity=0.336 Sum_probs=62.5
Q ss_pred ccCCccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhh-ccCCCchhHHHHhHHHHHHHHHHHHHHHHhh
Q 030809 61 MAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSV-RNEFKSSEFRRMRRRIARMLTVKRERELEEG 130 (171)
Q Consensus 61 MsKr~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkat-gqleNp~~IR~iRKdIARIlTVLrERel~e~ 130 (171)
|++ |+++|||+||.+||.++|.+|++|||+||||+++ |+++|||+|+.+||+||||+||++|++.++.
T Consensus 1 Ma~--mk~~elr~~s~~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~er~~~~~ 69 (71)
T 1vq8_V 1 MTV--LHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGDLQE 69 (71)
T ss_dssp -CC--SCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCC--CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776 9999999999999999999999999999999999 7999999999999999999999999987643
No 3
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=99.90 E-value=3.4e-24 Score=152.50 Aligned_cols=68 Identities=29% Similarity=0.458 Sum_probs=64.0
Q ss_pred ccCCccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHH
Q 030809 61 MAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128 (171)
Q Consensus 61 MsKr~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~ 128 (171)
||...|+++|||++|.+||.++|.+|++|||+||||+++||++||++|+.+||+||||+||++|++++
T Consensus 3 ~~~~~mK~~elr~~s~eEL~~~L~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~er~~~ 70 (72)
T 3v2d_2 3 LSEVRKQLEEARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLNEKRRQ 70 (72)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445899999999999999999999999999999999999999999999999999999999999864
No 4
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.90 E-value=1.7e-23 Score=148.94 Aligned_cols=65 Identities=31% Similarity=0.364 Sum_probs=62.8
Q ss_pred cChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhcc-CCCchhHHHHhHHHHHHHHHHHHHHHHhh
Q 030809 66 EEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRN-EFKSSEFRRMRRRIARMLTVKRERELEEG 130 (171)
Q Consensus 66 mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgq-leNp~~IR~iRKdIARIlTVLrERel~e~ 130 (171)
|+++|||+||.+||.++|.+|++|||+||||+++|| ++|||+|+.+||+||||+||++|++++..
T Consensus 1 MK~~elr~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~~~~ 66 (72)
T 3j21_W 1 MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLRERE 66 (72)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999 99999999999999999999999998654
No 5
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=99.90 E-value=8.3e-24 Score=148.06 Aligned_cols=63 Identities=33% Similarity=0.418 Sum_probs=61.0
Q ss_pred cChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHH
Q 030809 66 EEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELE 128 (171)
Q Consensus 66 mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~ 128 (171)
|+++|||+||.+||.++|.+|++|||+||||+++|+++|||+|+.+||+||||+||++|++++
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (66)
T 1r73_A 1 MKASELRNYTDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILRERELG 63 (66)
T ss_dssp CCCSHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHccCccCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999999999999999999999999999999999999999999863
No 6
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=99.89 E-value=6.6e-24 Score=148.95 Aligned_cols=64 Identities=27% Similarity=0.344 Sum_probs=61.8
Q ss_pred cChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHh
Q 030809 66 EEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEE 129 (171)
Q Consensus 66 mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e 129 (171)
|+++|||+||.+||.++|.+|++|||+||||+++|+++|||+|+.+||+||||+||++|++.+.
T Consensus 1 Mk~~elr~~s~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~er~~~~ 64 (67)
T 2zjr_V 1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAELARKG 64 (67)
T ss_dssp CCSTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999999999999999999999999999999999998764
No 7
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=99.89 E-value=1.5e-23 Score=163.02 Aligned_cols=88 Identities=25% Similarity=0.246 Sum_probs=79.2
Q ss_pred eccCCccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhc-cCCCchhHHHHhHHHHHHHHHHHHHHHHhhhh------
Q 030809 60 MMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVR-NEFKSSEFRRMRRRIARMLTVKRERELEEGIN------ 132 (171)
Q Consensus 60 ~MsKr~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatg-qleNp~~IR~iRKdIARIlTVLrERel~e~~n------ 132 (171)
||++ |+++|||+||.+||.++|.+|+.|||+||||+++| +++||++|+.+|||||||+||++|++.++...
T Consensus 1 M~~~--mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk~kk 78 (124)
T 4a17_U 1 MDKS--VRVFKLRTQTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQAVKDQFKGKS 78 (124)
T ss_dssp -CCC--CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCcc--cCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4554 99999999999999999999999999999999999 89999999999999999999999999988765
Q ss_pred --------------------hHhhhHHHHHHhhhhcc
Q 030809 133 --------------------KRLSRKLDRQWKKSIVV 149 (171)
Q Consensus 133 --------------------kr~sRk~~r~~K~s~~~ 149 (171)
++.++++.+++|+..+.
T Consensus 79 ~~P~dlr~kktra~rr~Lt~~e~~~kt~k~~~k~~~f 115 (124)
T 4a17_U 79 LKPLDIRVKKTRAIRRKLTKKQREAVLVKTQKKLNNF 115 (124)
T ss_dssp SCCTTTSCCSCHHHHHSCCHHHHHCCCHHHHHHHHHT
T ss_pred CCCcccCchHHHHHHHHcCHHHHhhhhHHHHHHHHhC
Confidence 37788888888776553
No 8
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=99.89 E-value=8.1e-24 Score=164.54 Aligned_cols=72 Identities=26% Similarity=0.363 Sum_probs=68.7
Q ss_pred ccCCccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhhhh
Q 030809 61 MAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEEGIN 132 (171)
Q Consensus 61 MsKr~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e~~n 132 (171)
||...|+++|||+||.+||.++|.+|+.|||+||||+++|+++||++|+.+|||||||+||++|++.++...
T Consensus 1 m~~~~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~ 72 (124)
T 3iz5_c 1 MSSGKVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQRAQLRL 72 (124)
T ss_dssp CCSCCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775579999999999999999999999999999999999999999999999999999999999999988765
No 9
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.88 E-value=2.7e-23 Score=161.32 Aligned_cols=86 Identities=34% Similarity=0.388 Sum_probs=59.2
Q ss_pred ccCCccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhcc-CCCchhHHHHhHHHHHHHHHHHHHHHHhhhh-------
Q 030809 61 MAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRN-EFKSSEFRRMRRRIARMLTVKRERELEEGIN------- 132 (171)
Q Consensus 61 MsKr~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgq-leNp~~IR~iRKdIARIlTVLrERel~e~~n------- 132 (171)
|++ |+++|||+||.+||.++|.+|++|||+||||+++|| ++|||+|+.+|||||||+||++|++.++..+
T Consensus 1 Ma~--mK~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er~~~~lr~~yk~kk~ 78 (123)
T 2zkr_v 1 MAK--IKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKY 78 (123)
T ss_dssp -----CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCC--CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 775 999999999999999999999999999999999995 8999999999999999999999999876544
Q ss_pred -------------------hHhhhHHHHHHhhhhc
Q 030809 133 -------------------KRLSRKLDRQWKKSIV 148 (171)
Q Consensus 133 -------------------kr~sRk~~r~~K~s~~ 148 (171)
++.++++.+++|+..+
T Consensus 79 ~p~dlr~k~tra~rr~Lt~~~~~~kt~k~~~k~~~ 113 (123)
T 2zkr_v 79 KPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERL 113 (123)
T ss_dssp -----------------------------------
T ss_pred CCcccchHHHHHHHHHcCHHHHhhccHHHHHHHHh
Confidence 2667777777766554
No 10
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=99.88 E-value=6.8e-24 Score=147.33 Aligned_cols=61 Identities=34% Similarity=0.507 Sum_probs=59.6
Q ss_pred cChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHH
Q 030809 66 EEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERE 126 (171)
Q Consensus 66 mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERe 126 (171)
|+++|||+||.+||.++|.+|++|||+||||+++|+++||++|+.+||+||||+||++|++
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~Elf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~er~ 61 (63)
T 3r8s_Y 1 MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEKA 61 (63)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHTHHHHHHHHHHHTTCCSCGGGTHHHHHHHHHHHHTTTSST
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999999999999999999999999999999875
No 11
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=99.87 E-value=3e-22 Score=154.91 Aligned_cols=85 Identities=34% Similarity=0.416 Sum_probs=77.5
Q ss_pred ccCCccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhhhh--------
Q 030809 61 MAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEEGIN-------- 132 (171)
Q Consensus 61 MsKr~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e~~n-------- 132 (171)
|++ |+++|||+||.+||.++|.+|+.|||+||||+++||+ |++|+.+|||||||+||++|++.++..+
T Consensus 1 Ma~--mK~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgql--~~~Ir~vRR~IARi~Tvl~er~~~~lr~~yk~kk~~ 76 (120)
T 3u5e_h 1 MAG--VKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS--LPKIKTVRKSIACVLTVINEQQREAVRQLYKGKKYQ 76 (120)
T ss_dssp -CC--CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTSSC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSCC
T ss_pred CCc--CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 776 9999999999999999999999999999999999999 9999999999999999999999988765
Q ss_pred ------------------hHhhhHHHHHHhhhhcc
Q 030809 133 ------------------KRLSRKLDRQWKKSIVV 149 (171)
Q Consensus 133 ------------------kr~sRk~~r~~K~s~~~ 149 (171)
++.+.++.+++|+..+.
T Consensus 77 p~dlr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~ 111 (120)
T 3u5e_h 77 PKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAF 111 (120)
T ss_dssp CTTTSCCSCHHHHSSCCSHHHHCCCHHHHHHHHHS
T ss_pred CcccCchHHHHHHHHcCHHHHhhhhHHHHHHHHhC
Confidence 37888888888876553
No 12
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.84 E-value=3.9e-22 Score=146.73 Aligned_cols=66 Identities=32% Similarity=0.441 Sum_probs=62.8
Q ss_pred ccChHHHhcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhhhh
Q 030809 65 EEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEEGIN 132 (171)
Q Consensus 65 ~mK~kELR~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e~~n 132 (171)
+|+++|||+||.+||.++|.+|++|||+||||+++||+ |++|+.+|||||||+||++|+++++..+
T Consensus 2 ~MKa~ELR~~S~eEL~~~L~eLK~ELf~LRfq~atgql--p~rIr~vRRdIARikTvl~er~~~~lr~ 67 (86)
T 3jyw_X 2 GVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS--LPKIKTVRKSIACVLTVINEQQAAAAAA 67 (86)
T ss_dssp CSCHHHHHTSCHHHHHHHHHHHTTTHHHHHHHHHTCCC--HHHHTCCSTTTHHHHTTTTHHHHHHHSS
T ss_pred CCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999 9999999999999999999999877543
No 13
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=62.63 E-value=8.3 Score=22.37 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHh
Q 030809 76 TEEINEEVVDLKGELFMLRLQKS 98 (171)
Q Consensus 76 ~eEL~ekL~ELKkELf~LRfQka 98 (171)
.+||-++|.+|++.|-+||-+..
T Consensus 3 adelykeledlqerlrklrkklr 25 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46888888888888888775543
No 14
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.10 E-value=50 Score=24.81 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=42.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHHHHHHHhh--hhhHhhhHHHHHHhhhhcc
Q 030809 72 RAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKRERELEEG--INKRLSRKLDRQWKKSIVV 149 (171)
Q Consensus 72 R~LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLrERel~e~--~nkr~sRk~~r~~K~s~~~ 149 (171)
|+.-.+.|..++..|+.+|-.+.... -..+..++..|..+..-|-+...... ..-..--+..........+
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~-------q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~ 85 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTES-------QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRE 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445667777777777777765544 46788888999998888877553211 1111112233444566778
Q ss_pred CCCCcchhchHHHHHHHHhh
Q 030809 150 RPPPSLKKLQEEEAAAEAEK 169 (171)
Q Consensus 150 ~ppp~~~~~~~~~~~~~~~~ 169 (171)
..|+.-++++|.|..|.|.+
T Consensus 86 ~~~~~q~~~~e~E~kAqa~E 105 (120)
T 3i00_A 86 DTEKAQRSLSEIERKAQANE 105 (120)
T ss_dssp --------------------
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 88888899999988876643
No 15
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=47.00 E-value=55 Score=24.53 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=38.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHh-----HHHHhhccCCCchhHHHHhHHHHHHHHH
Q 030809 68 MKEIRAKTTEEINEEVVDLKGELFML-----RLQKSVRNEFKSSEFRRMRRRIARMLTV 121 (171)
Q Consensus 68 ~kELR~LS~eEL~ekL~ELKkELf~L-----RfQkatgqleNp~~IR~iRKdIARIlTV 121 (171)
..-|.+||.+||..+-.+|.+.+-++ |++...... ..+|+.+--.|-|+.+.
T Consensus 24 ~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~--~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 24 TESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRL--DARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhhHHHHHHHHHHHHHH
Confidence 44588999999999999999988887 555553332 57788887777776653
No 16
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=40.54 E-value=1e+02 Score=22.19 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHH--hhccCCCchhHHHHhHHHHHHHHHHHH
Q 030809 74 KTTEEINEEVVDLKGELFMLRLQK--SVRNEFKSSEFRRMRRRIARMLTVKRE 124 (171)
Q Consensus 74 LS~eEL~ekL~ELKkELf~LRfQk--atgqleNp~~IR~iRKdIARIlTVLrE 124 (171)
|+.+.|+.++.+|+.+..+|.-+- ...++.++.--..+++.|..+.+ -|+
T Consensus 1 ~~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~-YNe 52 (85)
T 3viq_B 1 MEKSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHT-YNE 52 (85)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHH-HHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HhH
Confidence 345566666666666666555433 33556666666677777775543 344
No 17
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=37.10 E-value=1e+02 Score=21.20 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhHHHH-hhccCCCchhHHHHhHHHHHHHHHHHHHH
Q 030809 79 INEEVVDLKGELFMLRLQK-SVRNEFKSSEFRRMRRRIARMLTVKRERE 126 (171)
Q Consensus 79 L~ekL~ELKkELf~LRfQk-atgqleNp~~IR~iRKdIARIlTVLrERe 126 (171)
+.++...|+.|+..|+-+. +++--++..+.-.++|.+-.+..-+....
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~ 52 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLK 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888877 46777999999999999999987776544
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.83 E-value=68 Score=24.37 Aligned_cols=24 Identities=8% Similarity=0.266 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhh
Q 030809 76 TEEINEEVVDLKGELFMLRLQKSV 99 (171)
Q Consensus 76 ~eEL~ekL~ELKkELf~LRfQkat 99 (171)
.++|..++.++.+|+..|+-+...
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777666666666665554
No 19
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=32.74 E-value=41 Score=20.90 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHH
Q 030809 68 MKEIRAKTTEEINEEVVDLKGEL 90 (171)
Q Consensus 68 ~kELR~LS~eEL~ekL~ELKkEL 90 (171)
+++|.+||.-|+.+....+++++
T Consensus 7 ie~i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 7 IEAIEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCcHHHHHHHHHHHHHHH
Confidence 56799999999999998888764
No 20
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.77 E-value=31 Score=21.67 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhHHH
Q 030809 73 AKTTEEINEEVVDLKGELFMLRLQ 96 (171)
Q Consensus 73 ~LS~eEL~ekL~ELKkELf~LRfQ 96 (171)
.|+.+|..++|..|+.+|-.|+=.
T Consensus 7 ~mTLeEtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 7 RMSLEETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888777643
No 21
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=29.68 E-value=72 Score=21.36 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHh
Q 030809 74 KTTEEINEEVVDLKGELFMLRLQKS 98 (171)
Q Consensus 74 LS~eEL~ekL~ELKkELf~LRfQka 98 (171)
|+.++|..+|.+.|++|.++-...+
T Consensus 1 M~~~~L~~~IE~kR~eL~~l~~k~G 25 (62)
T 2bzb_A 1 MEMGQLKNKIENKKKELIQLVARHG 25 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5678999999999999999977653
No 22
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=27.76 E-value=57 Score=21.99 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHH
Q 030809 74 KTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFR 109 (171)
Q Consensus 74 LS~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR 109 (171)
|..++|..+|.+.|++|.++-... ++..|..|+
T Consensus 1 M~~~~L~~~IE~kR~eL~~l~~k~---Gl~~~~vI~ 33 (64)
T 2c0s_A 1 MNVTKLNDRIEAKKKELIYLVEKY---GFTHHKVIS 33 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHT---CTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHc---CCCCHHHHH
Confidence 566899999999999999998543 455555443
No 23
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=25.17 E-value=62 Score=27.79 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhccCCCc
Q 030809 77 EEINEEVVDLKGELFMLRLQKSVRNEFKS 105 (171)
Q Consensus 77 eEL~ekL~ELKkELf~LRfQkatgqleNp 105 (171)
++|+.+|.|||+|.-.|--+.+++|+-..
T Consensus 245 qDLerql~~LR~eFN~Lsq~iA~sqlidl 273 (278)
T 1slq_A 245 QDLERQLGELREEFNALSQEIAMSQLIDL 273 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999998654
No 24
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=24.19 E-value=65 Score=18.81 Aligned_cols=22 Identities=27% Similarity=0.364 Sum_probs=18.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHHH
Q 030809 68 MKEIRAKTTEEINEEVVDLKGE 89 (171)
Q Consensus 68 ~kELR~LS~eEL~ekL~ELKkE 89 (171)
++.|.+||.-|+.+.+..++++
T Consensus 7 ie~i~~lTvlEl~eLvk~lEe~ 28 (30)
T 1zav_U 7 IEAIEKLTVSELAELVKKLEDK 28 (30)
T ss_dssp HHHHHHSBHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHH
Confidence 4678999999999988888765
No 25
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=23.89 E-value=86 Score=23.27 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 030809 75 TTEEINEEVVDLKGELFMLRLQKSVRN 101 (171)
Q Consensus 75 S~eEL~ekL~ELKkELf~LRfQkatgq 101 (171)
-.+||+.+|..|..+|-+.+.|+-++.
T Consensus 68 ~v~elqgEI~~Lnq~Lqda~~~~~~~~ 94 (99)
T 3ni0_A 68 RIKELENEVTKLNQELENLRIQKETSS 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 378999999999999999999987654
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.99 E-value=90 Score=20.12 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 030809 77 EEINEEVVDLKGELFMLRL 95 (171)
Q Consensus 77 eEL~ekL~ELKkELf~LRf 95 (171)
.+|..++..|+.|+..|+.
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554
No 27
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=22.53 E-value=1.6e+02 Score=21.55 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhHHHH-hhccCCCchhHHHHhHHHHHHHHHHHHH
Q 030809 81 EEVVDLKGELFMLRLQK-SVRNEFKSSEFRRMRRRIARMLTVKRER 125 (171)
Q Consensus 81 ekL~ELKkELf~LRfQk-atgqleNp~~IR~iRKdIARIlTVLrER 125 (171)
.+...|+.|+.+|+-+. +++--++-.+--.++|.+-.++.-|...
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l 75 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNL 75 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766 5677799999999999999988766544
No 28
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.44 E-value=2.3e+02 Score=20.63 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-hhccCCCchhHHHHhHHHHHHHHHHHHHH
Q 030809 77 EEINEEVVDLKGELFMLRLQK-SVRNEFKSSEFRRMRRRIARMLTVKRERE 126 (171)
Q Consensus 77 eEL~ekL~ELKkELf~LRfQk-atgqleNp~~IR~iRKdIARIlTVLrERe 126 (171)
.....+...|+.|+.+|+-+. +++--++-.+--.++|.+-.+..-+....
T Consensus 19 s~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~ 69 (93)
T 3sjb_C 19 NELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLK 69 (93)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888877 46667999999999999999987766544
No 29
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.29 E-value=80 Score=20.38 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=24.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHhHHHH
Q 030809 68 MKEIRAKTTEEINEEVVDLKGELFMLRLQK 97 (171)
Q Consensus 68 ~kELR~LS~eEL~ekL~ELKkELf~LRfQk 97 (171)
..++-+.|+..|++.+++|..+|+.-+.++
T Consensus 6 ~aefAERsV~KLek~ID~LEdeL~~eKek~ 35 (52)
T 2z5i_A 6 KNYHLENEVARLKKLVDDLEDELYAQKLKY 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 356778889999999999999999776554
No 30
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.87 E-value=77 Score=23.91 Aligned_cols=42 Identities=29% Similarity=0.187 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhHHHHhh-ccC-CCchhHHHHhHH
Q 030809 73 AKTTEEINEEVVDLKGELFMLRLQKSV-RNE-FKSSEFRRMRRR 114 (171)
Q Consensus 73 ~LS~eEL~ekL~ELKkELf~LRfQkat-gql-eNp~~IR~iRKd 114 (171)
++|.+||..+|..|+-|=-.|+-+... |+. .++..+..-.|+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKe 50 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRE 50 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHH
Confidence 899999999999999998888876643 233 334444333343
No 31
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.35 E-value=2e+02 Score=19.13 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHhhccCCCchhHHHHhHHHHHHHHHHH
Q 030809 75 TTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVKR 123 (171)
Q Consensus 75 S~eEL~ekL~ELKkELf~LRfQkatgqleNp~~IR~iRKdIARIlTVLr 123 (171)
+.++|..++..||+|-..||-... +|.+.+..+--+---|+-++.
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~----dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELE----DNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHH----hhHHHHHHHHhhhhhHHHHHH
Confidence 678999999999999888887665 466776666665555555543
Done!