BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030811
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 26 ATRWIVGANQGWTNNV--NYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSD 83
AT VG + GWT V +Y WA F+ GD L F Y+ NVL+V++ ++SCNS
Sbjct: 2 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61
Query: 84 HPLHNWTTGAGRDVVPLNVTRHYYFISG-KGFCYGGMKLAVRVE 126
P ++T+GA D +PL +YF+ G G C G K+ ++V+
Sbjct: 62 SPAASYTSGA--DSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 103
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 34 NQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGA 93
N GW+ NVN A+ K F GD L F Y + Q NV+ VN Y SC++ P T +
Sbjct: 4 NIGWSFNVN---GARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSA--PRGARTYSS 58
Query: 94 GRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVE 126
G+D + L ++Y+ S G C GGMK+A+ +
Sbjct: 59 GQDRIKLTRGQNYFICSFPGHCGGGMKIAINAK 91
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 29 WIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHN 88
++VG + GWT N W K K F GD L F Y+ + NV+ VN+ + +CN+
Sbjct: 3 YVVGGSGGWT--FNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKV 60
Query: 89 WTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAV 123
+T+ GRD + L + Y+ + G C GMK+AV
Sbjct: 61 YTS--GRDQIKLPKGQSYFICNFPGHCQSGMKIAV 93
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 31 VGANQGWTNNVN---YTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLH 87
VG + W + Y WA K F GD L F + +V V K +++C ++P+
Sbjct: 6 VGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPIS 65
Query: 88 NWTTGAGRDVVPLNVTRHYYFISGKG-FCYGGMKLAVRV 125
+ TT + + LN T Y+I G C G KL++ V
Sbjct: 66 HMTTPPVK--IMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|2RGS|A Chain A, Fc-Fragment Of Monoclonal Antibody Igg2b From Mus Musculus
pdb|2RGS|B Chain B, Fc-Fragment Of Monoclonal Antibody Igg2b From Mus Musculus
Length = 218
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 23 EVDATRWIVGANQG-----WTNNVNYTIWAKD-KHFYNGDWLFFVYDRNQMNVLEVNKTD 76
+V T +VG N G WT+N + KD + D +F+Y + M + KTD
Sbjct: 134 DVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTD 193
Query: 77 YESCNSDH 84
SCN H
Sbjct: 194 SFSCNVRH 201
>pdb|2POD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Burkholderia Pseudomallei K96243
pdb|2POD|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Burkholderia Pseudomallei K96243
Length = 410
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 48 KDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYY 107
+ + F N W+ D + + +T Y +C+++ +H W PL + RH
Sbjct: 12 RPEEFPNLLWVLVHTDEG---ITGLGETFYGACSAEAYIHEWAANRLIGEDPLQIDRHAK 68
Query: 108 FISG-KGFCYGGMK 120
+SG GF G +
Sbjct: 69 RLSGYLGFRSAGAE 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,279,579
Number of Sequences: 62578
Number of extensions: 214794
Number of successful extensions: 435
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 9
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)