Query 030811
Match_columns 171
No_of_seqs 129 out of 832
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:55:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 8.3E-50 1.8E-54 319.2 14.6 146 18-165 12-167 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 2.1E-32 4.6E-37 197.0 3.3 81 37-119 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.5 2.3E-06 5.1E-11 64.6 11.5 90 24-126 26-119 (119)
4 TIGR02656 cyanin_plasto plasto 98.3 5.5E-06 1.2E-10 60.5 8.6 90 28-126 2-99 (99)
5 PF00127 Copper-bind: Copper b 98.3 4.9E-06 1.1E-10 60.6 7.8 77 48-126 17-99 (99)
6 COG3794 PetE Plastocyanin [Ene 98.2 1.5E-05 3.2E-10 61.7 10.0 84 30-126 42-127 (128)
7 TIGR02375 pseudoazurin pseudoa 98.1 2.8E-05 6.1E-10 59.1 8.6 76 48-130 15-91 (116)
8 TIGR03102 halo_cynanin halocya 98.1 4.2E-05 9.1E-10 58.1 9.4 90 24-126 21-115 (115)
9 TIGR02657 amicyanin amicyanin. 97.0 0.0061 1.3E-07 42.9 7.8 71 48-126 11-83 (83)
10 KOG3858 Ephrin, ligand for Eph 96.7 0.026 5.5E-07 47.9 11.1 77 52-130 47-164 (233)
11 TIGR03095 rusti_cyanin rusticy 96.6 0.011 2.3E-07 46.6 7.7 73 51-126 55-148 (148)
12 PF06525 SoxE: Sulfocyanin (So 95.7 0.074 1.6E-06 44.0 8.5 79 52-130 90-190 (196)
13 PF13473 Cupredoxin_1: Cupredo 94.3 0.034 7.3E-07 40.4 2.4 64 48-125 35-104 (104)
14 PF00812 Ephrin: Ephrin; Inte 94.0 0.024 5.2E-07 44.7 1.1 74 51-126 25-144 (145)
15 TIGR03094 sulfo_cyanin sulfocy 91.1 0.4 8.7E-06 39.5 4.6 30 101-130 159-189 (195)
16 PF07172 GRP: Glycine rich pro 91.0 0.12 2.6E-06 38.0 1.4 28 1-29 1-28 (95)
17 TIGR03096 nitroso_cyanin nitro 90.8 0.74 1.6E-05 36.0 5.7 59 47-116 60-123 (135)
18 COG4454 Uncharacterized copper 88.8 0.71 1.5E-05 37.1 4.3 79 47-126 62-157 (158)
19 PRK10378 inactive ferrous ion 86.1 6 0.00013 35.8 9.1 28 97-128 91-118 (375)
20 TIGR02376 Cu_nitrite_red nitri 84.1 4.1 8.8E-05 35.5 6.9 77 50-129 61-148 (311)
21 PRK02888 nitrous-oxide reducta 80.5 5.4 0.00012 38.5 6.7 69 49-127 556-634 (635)
22 PF00116 COX2: Cytochrome C ox 79.4 3.6 7.7E-05 31.0 4.2 65 50-125 48-119 (120)
23 PLN02604 oxidoreductase 77.1 25 0.00054 33.2 10.0 80 49-129 56-146 (566)
24 TIGR02866 CoxB cytochrome c ox 75.5 5.7 0.00012 32.3 4.7 67 51-128 120-193 (201)
25 TIGR02695 azurin azurin. Azuri 74.1 14 0.00031 28.6 6.3 29 95-124 90-124 (125)
26 MTH00047 COX2 cytochrome c oxi 73.3 5.6 0.00012 32.7 4.2 32 97-129 159-193 (194)
27 PLN02354 copper ion binding / 72.1 34 0.00073 32.4 9.5 77 50-129 60-148 (552)
28 PF07732 Cu-oxidase_3: Multico 68.9 5.4 0.00012 29.8 2.9 78 50-128 28-116 (117)
29 COG1622 CyoA Heme/copper-type 67.9 16 0.00034 31.2 5.9 91 30-130 117-215 (247)
30 PF02839 CBM_5_12: Carbohydrat 67.2 3.2 7E-05 25.1 1.1 19 43-61 1-19 (41)
31 cd06555 ASCH_PF0470_like ASC-1 61.8 8.5 0.00018 29.0 2.8 30 50-79 30-61 (109)
32 TIGR03388 ascorbase L-ascorbat 61.0 32 0.00069 32.2 7.0 77 50-129 34-123 (541)
33 PLN02991 oxidoreductase 57.6 1.2E+02 0.0027 28.6 10.3 77 50-129 61-149 (543)
34 KOG2315 Predicted translation 52.8 32 0.00069 32.8 5.5 64 47-111 210-278 (566)
35 PF12961 DUF3850: Domain of Un 52.6 9 0.0002 26.9 1.5 14 48-61 25-38 (72)
36 PLN00044 multi-copper oxidase- 51.9 49 0.0011 31.8 6.7 77 50-129 62-150 (596)
37 MTH00140 COX2 cytochrome c oxi 50.2 19 0.00042 30.0 3.4 31 97-128 183-216 (228)
38 PLN02835 oxidoreductase 47.2 90 0.002 29.4 7.6 77 50-129 62-150 (539)
39 TIGR03389 laccase laccase, pla 46.0 78 0.0017 29.6 7.0 78 50-130 36-125 (539)
40 PLN02191 L-ascorbate oxidase 45.9 75 0.0016 30.2 6.9 34 96-129 111-145 (574)
41 PF05382 Amidase_5: Bacterioph 44.2 58 0.0013 25.6 5.0 35 50-84 74-113 (145)
42 PTZ00047 cytochrome c oxidase 43.6 31 0.00067 27.9 3.4 30 97-127 116-148 (162)
43 PLN02168 copper ion binding / 42.6 1.1E+02 0.0024 29.0 7.4 78 50-130 59-148 (545)
44 TIGR01433 CyoA cytochrome o ub 42.6 28 0.00061 29.1 3.2 31 96-127 181-214 (226)
45 MTH00154 COX2 cytochrome c oxi 42.5 31 0.00068 28.8 3.5 30 97-127 183-215 (227)
46 MTH00168 COX2 cytochrome c oxi 41.5 35 0.00075 28.5 3.6 30 97-127 183-215 (225)
47 TIGR01432 QOXA cytochrome aa3 40.6 32 0.0007 28.3 3.3 32 96-128 172-206 (217)
48 PF02362 B3: B3 DNA binding do 40.4 22 0.00048 24.7 2.0 19 47-65 69-87 (100)
49 MTH00139 COX2 cytochrome c oxi 40.2 35 0.00076 28.4 3.4 30 97-127 183-215 (226)
50 TIGR02228 sigpep_I_arch signal 40.0 1.1E+02 0.0023 24.2 6.0 25 49-73 58-86 (158)
51 MTH00117 COX2 cytochrome c oxi 38.8 38 0.00083 28.3 3.5 30 97-127 183-215 (227)
52 MTH00038 COX2 cytochrome c oxi 38.6 43 0.00093 28.0 3.7 30 97-127 183-215 (229)
53 MTH00129 COX2 cytochrome c oxi 38.3 34 0.00074 28.7 3.1 30 97-127 183-215 (230)
54 MTH00023 COX2 cytochrome c oxi 36.7 45 0.00097 28.1 3.6 30 97-127 194-226 (240)
55 MTH00098 COX2 cytochrome c oxi 36.2 44 0.00094 28.0 3.4 30 97-127 183-215 (227)
56 PLN02792 oxidoreductase 36.0 1.5E+02 0.0032 28.1 7.2 84 51-136 50-144 (536)
57 PF07798 DUF1640: Protein of u 34.9 26 0.00057 27.9 1.8 20 152-171 157-176 (177)
58 PF01708 Gemini_mov: Geminivir 33.8 52 0.0011 24.2 3.0 20 149-168 37-56 (91)
59 PF10377 ATG11: Autophagy-rela 33.5 29 0.00062 26.6 1.8 19 50-68 41-59 (129)
60 KOG3156 Uncharacterized membra 33.2 29 0.00063 29.3 1.8 21 151-171 199-219 (220)
61 PF09451 ATG27: Autophagy-rela 32.8 35 0.00075 29.0 2.3 33 16-48 213-245 (268)
62 MTH00008 COX2 cytochrome c oxi 32.4 53 0.0012 27.5 3.3 30 97-127 183-215 (228)
63 PF02157 Man-6-P_recep: Mannos 32.1 15 0.00033 32.1 0.0 55 8-63 192-246 (278)
64 TIGR01480 copper_res_A copper- 31.9 1.3E+02 0.0029 28.8 6.2 85 37-125 488-586 (587)
65 smart00495 ChtBD3 Chitin-bindi 29.6 36 0.00079 20.3 1.4 18 43-60 1-18 (41)
66 MTH00051 COX2 cytochrome c oxi 29.4 56 0.0012 27.5 3.0 30 97-127 187-219 (234)
67 PRK09723 putative fimbrial-lik 29.2 4.7E+02 0.01 24.3 9.9 20 17-36 18-37 (421)
68 KOG3653 Transforming growth fa 28.8 1.8E+02 0.004 27.6 6.4 16 105-120 114-130 (534)
69 MTH00076 COX2 cytochrome c oxi 28.7 65 0.0014 26.9 3.2 30 97-127 183-215 (228)
70 PRK13838 conjugal transfer pil 28.0 85 0.0018 25.2 3.7 15 49-63 48-62 (176)
71 MTH00027 COX2 cytochrome c oxi 27.5 94 0.002 26.7 4.1 30 97-127 217-249 (262)
72 PF11604 CusF_Ec: Copper bindi 27.4 52 0.0011 22.4 2.0 23 43-65 34-56 (70)
73 PF14326 DUF4384: Domain of un 27.4 86 0.0019 21.6 3.2 17 51-67 2-18 (83)
74 PF15240 Pro-rich: Proline-ric 27.1 37 0.0008 27.9 1.4 14 9-22 2-15 (179)
75 PF10670 DUF4198: Domain of un 26.5 1.6E+02 0.0035 23.0 5.1 60 51-110 146-209 (215)
76 PF12273 RCR: Chitin synthesis 26.3 30 0.00065 26.1 0.8 8 41-48 34-41 (130)
77 PF00686 CBM_20: Starch bindin 25.4 1E+02 0.0022 21.5 3.4 38 27-64 17-68 (96)
78 TIGR01480 copper_res_A copper- 24.5 2.3E+02 0.005 27.1 6.4 33 96-128 130-163 (587)
79 MTH00080 COX2 cytochrome c oxi 24.2 97 0.0021 26.1 3.5 30 97-127 186-218 (231)
80 PRK11528 hypothetical protein; 24.1 1.3E+02 0.0027 25.8 4.2 33 36-69 27-68 (254)
81 COG3627 PhnJ Uncharacterized e 24.0 47 0.001 28.4 1.5 24 96-119 257-281 (291)
82 KOG1546 Metacaspase involved i 22.9 47 0.001 30.0 1.4 14 51-64 134-147 (362)
83 PF08980 DUF1883: Domain of un 22.6 14 0.0003 27.3 -1.6 73 50-126 9-86 (94)
84 MTH00185 COX2 cytochrome c oxi 22.6 1E+02 0.0022 25.9 3.3 30 97-127 183-215 (230)
85 PRK10525 cytochrome o ubiquino 21.9 1.1E+02 0.0023 27.2 3.4 30 97-127 194-226 (315)
86 TIGR03715 KxYKxGKxW KxYKxGKxW 21.2 1.2E+02 0.0026 17.1 2.4 17 3-19 9-25 (29)
87 PRK10883 FtsI repressor; Provi 21.1 5.8E+02 0.013 23.5 8.2 75 50-130 79-168 (471)
88 cd05810 CBM20_alpha_MTH Glucan 20.7 74 0.0016 22.8 1.9 38 27-64 17-64 (97)
89 PF02989 DUF228: Lyme disease 20.7 56 0.0012 26.9 1.3 22 42-63 117-140 (184)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=8.3e-50 Score=319.18 Aligned_cols=146 Identities=40% Similarity=0.825 Sum_probs=128.5
Q ss_pred HhhccccceeEEEecCCCCCCCCCCccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCccee
Q 030811 18 TILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDV 97 (171)
Q Consensus 18 ~~~~~~a~A~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~ 97 (171)
+++...+.|++|+|||+.||+.+.||++|+++++|++||+|+|+|++++|||+||+|++|++|+.++|+..+++|+ +.
T Consensus 12 ~~~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~--d~ 89 (167)
T PLN03148 12 LFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGK--DF 89 (167)
T ss_pred HHhhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCC--cE
Confidence 3445678899999999999999999999999999999999999999999999999999999999999999999987 99
Q ss_pred EEcccCceEEEEeCcCcCcCCCeEEEEeeCCCCCCCCCCCCCCCCCCccc----------ccCchhHHHHHHHHHHHh
Q 030811 98 VPLNVTRHYYFISGKGFCYGGMKLAVRVENPPPPPSASPIKEKSGTPSTL----------YRGQLVLPAVFAIGAVWD 165 (171)
Q Consensus 98 v~L~~~g~~YFic~~gHC~~GmKl~I~V~~~~~~p~~~p~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 165 (171)
|+|+++|+|||||+.+||++||||+|+|.+.+|||++++....+.+|++. .++|++.+++|+++++|+
T Consensus 90 v~L~~~G~~YFIcg~ghC~~GmKl~I~V~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (167)
T PLN03148 90 IPLNKAKRYYFICGNGQCFNGMKVTILVHPLPPPPSHTAAANGAKSHSAAPAAFHKGLVALRGLVLWMASIWFGSGWI 167 (167)
T ss_pred EEecCCccEEEEcCCCccccCCEEEEEEcCCCCCCCCccccCCCCCCCCcccccccchhhhhhhhhHHHHHHhhcccC
Confidence 99999999999999999999999999999877666655544344344433 678888899999988885
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=2.1e-32 Score=196.98 Aligned_cols=81 Identities=48% Similarity=0.854 Sum_probs=66.9
Q ss_pred CCCCC---CccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCcceeEEcccCceEEEEeCc-
Q 030811 37 WTNNV---NYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGK- 112 (171)
Q Consensus 37 W~~~~---~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v~L~~~g~~YFic~~- 112 (171)
|+.+. +|++||++++|+|||+|+|+|+++.|+|+||+|++|++|+.++|+..+++|+ +.|+|+++|++||||++
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~--~~v~L~~~G~~YFic~~~ 78 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGN--DTVTLTKPGPHYFICGVP 78 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSE--EEEEE-SSEEEEEE--ST
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCC--EEEEeCCCcCeEEEeCCC
Confidence 88776 9999999999999999999999999999999999999999999999888876 99999999999999999
Q ss_pred CcCcCCC
Q 030811 113 GFCYGGM 119 (171)
Q Consensus 113 gHC~~Gm 119 (171)
+||++||
T Consensus 79 ~HC~~Gq 85 (85)
T PF02298_consen 79 GHCQKGQ 85 (85)
T ss_dssp TTTTTT-
T ss_pred CcccccC
Confidence 9999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.52 E-value=2.3e-06 Score=64.60 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=58.4
Q ss_pred cceeE--EEecCCCCC-CCCCCccccccCCceeeCCEEEEEee-cCCceEEEEccccCCCcCCCCCCccccCCCcceeEE
Q 030811 24 VDATR--WIVGANQGW-TNNVNYTIWAKDKHFYNGDWLFFVYD-RNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVP 99 (171)
Q Consensus 24 a~A~~--~~VGg~~GW-~~~~~Y~~Wa~~~~F~vGD~LvF~y~-~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v~ 99 (171)
+.+++ +.+|.+.|+ .+.+ +.-++++||++.|..+ ...|++.- +. .+....+ . .....|. ..+++
T Consensus 26 a~a~~~~V~~~~~~~~~~F~P------~~i~v~~Gd~V~~~N~~~~~H~v~~-~~--~~~~~~~-~-~~~~pg~-t~~~t 93 (119)
T PRK02710 26 ASAETVEVKMGSDAGMLAFEP------STLTIKAGDTVKWVNNKLAPHNAVF-DG--AKELSHK-D-LAFAPGE-SWEET 93 (119)
T ss_pred cccceEEEEEccCCCeeEEeC------CEEEEcCCCEEEEEECCCCCceEEe-cC--Ccccccc-c-cccCCCC-EEEEE
Confidence 44444 456665444 3333 5678999999999874 36899853 11 1111111 1 1123342 35788
Q ss_pred cccCceEEEEeCcCcCcCCCeEEEEee
Q 030811 100 LNVTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 100 L~~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
++++|.|-|+|. .|=+.|||..|+|+
T Consensus 94 F~~~G~y~y~C~-~H~~~gM~G~I~V~ 119 (119)
T PRK02710 94 FSEAGTYTYYCE-PHRGAGMVGKITVE 119 (119)
T ss_pred ecCCEEEEEEcC-CCccCCcEEEEEEC
Confidence 889999999999 89999999999984
No 4
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.30 E-value=5.5e-06 Score=60.47 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=58.0
Q ss_pred EEEecCCC-CCCCCCCccccccCCceeeCCEEEEEeec-CCceEEEEccccCC------CcCCCCCCccccCCCcceeEE
Q 030811 28 RWIVGANQ-GWTNNVNYTIWAKDKHFYNGDWLFFVYDR-NQMNVLEVNKTDYE------SCNSDHPLHNWTTGAGRDVVP 99 (171)
Q Consensus 28 ~~~VGg~~-GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~------~C~~~~p~~~~~~G~g~~~v~ 99 (171)
++.+|.+. +-.+.+ +.-++++||++.|+.+. ..|++...+.. .. .....+.......|. ...++
T Consensus 2 ~v~~g~~~g~~~F~P------~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~-t~~~t 73 (99)
T TIGR02656 2 TVKMGADKGALVFEP------AKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGE-SYEVT 73 (99)
T ss_pred EEEEecCCCceeEeC------CEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCC-EEEEE
Confidence 45667543 344544 55789999999999653 57999764221 00 001000001123342 35678
Q ss_pred cccCceEEEEeCcCcCcCCCeEEEEee
Q 030811 100 LNVTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 100 L~~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
++.+|+|-|.|. +|++.||+-.|.|.
T Consensus 74 F~~~G~y~y~C~-~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 74 FSTPGTYTFYCE-PHRGAGMVGKITVE 99 (99)
T ss_pred eCCCEEEEEEcC-CccccCCEEEEEEC
Confidence 889999999999 99999999999884
No 5
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.27 E-value=4.9e-06 Score=60.58 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=53.5
Q ss_pred cCCceeeCCEEEEEee-cCCceEEEEccc--cCCCcCCCCC---CccccCCCcceeEEcccCceEEEEeCcCcCcCCCeE
Q 030811 48 KDKHFYNGDWLFFVYD-RNQMNVLEVNKT--DYESCNSDHP---LHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKL 121 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~-~~~hsV~~V~~~--~Y~~C~~~~p---~~~~~~G~g~~~v~L~~~g~~YFic~~gHC~~GmKl 121 (171)
+..++++||++.|... ...|++...+.. .-...+...+ ......|. ...++++++|.|.|+|.. |...||+-
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~tF~~~G~y~y~C~P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGE-TYSVTFTKPGTYEYYCTP-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTE-EEEEEEESSEEEEEEETT-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCC-EEEEEeCCCeEEEEEcCC-CcccCCEE
Confidence 4568899999999995 578999987521 0111221111 11123332 356788899999999996 99999999
Q ss_pred EEEee
Q 030811 122 AVRVE 126 (171)
Q Consensus 122 ~I~V~ 126 (171)
.|.|+
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99985
No 6
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.22 E-value=1.5e-05 Score=61.75 Aligned_cols=84 Identities=14% Similarity=0.039 Sum_probs=60.1
Q ss_pred EecCCCCCCCCCCccccccCCceeeCCEEEEEeecC-CceEEEEccccCCCcCCCCCCccccCC-CcceeEEcccCceEE
Q 030811 30 IVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRN-QMNVLEVNKTDYESCNSDHPLHNWTTG-AGRDVVPLNVTRHYY 107 (171)
Q Consensus 30 ~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~hsV~~V~~~~Y~~C~~~~p~~~~~~G-~g~~~v~L~~~g~~Y 107 (171)
++++...-.+.+ +..+.++||++.|.+... .|||.-.... +. .....+..+ +-+.+.+++++|.|.
T Consensus 42 ~~~~~~~~vF~P------A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~-----~~-~g~~~~~~~~~~s~~~Tfe~~G~Y~ 109 (128)
T COG3794 42 KGVDIGAMVFEP------AEVTVKPGDTVTWVNTDSVGHNVTAVGGM-----DP-EGSGTLKAGINESFTHTFETPGEYT 109 (128)
T ss_pred eeccCcceeEcC------cEEEECCCCEEEEEECCCCCceEEEeCCC-----Cc-ccccccccCCCcceEEEecccceEE
Confidence 344444555665 678999999999999987 9999887544 11 111122222 113578899999999
Q ss_pred EEeCcCcCcCCCeEEEEee
Q 030811 108 FISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 108 Fic~~gHC~~GmKl~I~V~ 126 (171)
|+|. -|=..|||-.|.|.
T Consensus 110 Y~C~-PH~~~gM~G~IvV~ 127 (128)
T COG3794 110 YYCT-PHPGMGMKGKIVVG 127 (128)
T ss_pred EEec-cCCCCCcEEEEEeC
Confidence 9999 58889999999986
No 7
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.07 E-value=2.8e-05 Score=59.09 Aligned_cols=76 Identities=18% Similarity=0.136 Sum_probs=54.9
Q ss_pred cCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCC-cceeEEcccCceEEEEeCcCcCcCCCeEEEEee
Q 030811 48 KDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGA-GRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~-g~~~v~L~~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
+..++++||++.|.+....|+|..+....-+ ..+. +.++. .+.+++++++|.|-|.|. .|=..||+-.|+|.
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~---g~~~---~~s~~g~~~~~tF~~~G~Y~Y~C~-pH~~~GM~G~V~Vg 87 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPE---GAEA---FKSKINEEYTVTVTEEGVYGVKCT-PHYGMGMVALIQVG 87 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcC---Cccc---ccCCCCCEEEEEeCCCEEEEEEcC-CCccCCCEEEEEEC
Confidence 5578999999999998778998764321111 1111 22222 235788999999999999 89999999999998
Q ss_pred CCCC
Q 030811 127 NPPP 130 (171)
Q Consensus 127 ~~~~ 130 (171)
.+++
T Consensus 88 ~~~~ 91 (116)
T TIGR02375 88 DPPA 91 (116)
T ss_pred CCCc
Confidence 7543
No 8
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.06 E-value=4.2e-05 Score=58.09 Aligned_cols=90 Identities=21% Similarity=0.171 Sum_probs=61.9
Q ss_pred cceeEEEec--CCC-CCCCCCCccccccCCceeeCCEEEEEeec--CCceEEEEccccCCCcCCCCCCccccCCCcceeE
Q 030811 24 VDATRWIVG--ANQ-GWTNNVNYTIWAKDKHFYNGDWLFFVYDR--NQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVV 98 (171)
Q Consensus 24 a~A~~~~VG--g~~-GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~--~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v 98 (171)
....++.|| ++. +..+.+ +..++++||++.|+++. ..|+|.-.+...|+. ... ....| ....+
T Consensus 21 ~~~~~v~~G~~~~~g~~~F~P------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~-~~~~G-~t~s~ 88 (115)
T TIGR03102 21 QDEVTVDVGAEANGGGFAFDP------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SER-VSEEG-TTYEH 88 (115)
T ss_pred CceEEEEecccCCCCceeEeC------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----ccc-ccCCC-CEEEE
Confidence 345678888 322 355554 55799999999999864 579997533333431 111 12233 24678
Q ss_pred EcccCceEEEEeCcCcCcCCCeEEEEee
Q 030811 99 PLNVTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 99 ~L~~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
+++++|.|-|+|. -|=..|||-.|.|.
T Consensus 89 Tf~~~G~Y~Y~C~-pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 89 TFEEPGIYLYVCV-PHEALGMKGAVVVE 115 (115)
T ss_pred EecCCcEEEEEcc-CCCCCCCEEEEEEC
Confidence 9999999999999 68778999999984
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=96.97 E-value=0.0061 Score=42.91 Aligned_cols=71 Identities=17% Similarity=0.087 Sum_probs=46.9
Q ss_pred cCCceeeCCEEEEEeec-CCceEEEEccccCCCcCCCCCCccccCCCcceeEEcccCceEEEEeCc-CcCcCCCeEEEEe
Q 030811 48 KDKHFYNGDWLFFVYDR-NQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGK-GFCYGGMKLAVRV 125 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v~L~~~g~~YFic~~-gHC~~GmKl~I~V 125 (171)
+..++++||+|.|+.+. ..|+|.-.+..+ ..=+...+ ....|. ...++++++|+|-|.|.. - .||-.|.|
T Consensus 11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~--~~~~g~-~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V 82 (83)
T TIGR02657 11 PELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP--MMKKEQ-AYSLTFTEAGTYDYHCTPHP----FMRGKVVV 82 (83)
T ss_pred CEEEECCCCEEEEEECCCCCccEEecCCCC-cccccccc--ccCCCC-EEEEECCCCEEEEEEcCCCC----CCeEEEEE
Confidence 34578899999999875 479997643221 11001111 123332 357899999999999997 4 49999887
Q ss_pred e
Q 030811 126 E 126 (171)
Q Consensus 126 ~ 126 (171)
.
T Consensus 83 ~ 83 (83)
T TIGR02657 83 E 83 (83)
T ss_pred C
Confidence 4
No 10
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=96.74 E-value=0.026 Score=47.90 Aligned_cols=77 Identities=27% Similarity=0.583 Sum_probs=46.3
Q ss_pred eeeCCEEEEE---eecC-C-----ceEEEEccccCCCcCC-CCCCccc------------------cCCCcceeEEcccC
Q 030811 52 FYNGDWLFFV---YDRN-Q-----MNVLEVNKTDYESCNS-DHPLHNW------------------TTGAGRDVVPLNVT 103 (171)
Q Consensus 52 F~vGD~LvF~---y~~~-~-----hsV~~V~~~~Y~~C~~-~~p~~~~------------------~~G~g~~~v~L~~~ 103 (171)
.++||.|-+- |+.+ . .-+++|++++|+.|+. +.+...+ +.=. .-+.....
T Consensus 47 v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p--~G~EF~pG 124 (233)
T KOG3858|consen 47 VQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFP--LGFEFQPG 124 (233)
T ss_pred eccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCC--CCccccCC
Confidence 4468888774 3322 1 2368899999999995 3332111 1100 12344455
Q ss_pred ceEEEEeCc-----Cc-------Cc-CCCeEEEEeeCCCC
Q 030811 104 RHYYFISGK-----GF-------CY-GGMKLAVRVENPPP 130 (171)
Q Consensus 104 g~~YFic~~-----gH-------C~-~GmKl~I~V~~~~~ 130 (171)
.+|||||+- +- |. ..||+.+.|...+.
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 689999985 22 54 36999999987544
No 11
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.65 E-value=0.011 Score=46.59 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=46.6
Q ss_pred ceeeCCEEEEEeecC----CceEEEEcc-ccCC------------CcCCCCCCccccCCC---cceeEEcccCceEEEEe
Q 030811 51 HFYNGDWLFFVYDRN----QMNVLEVNK-TDYE------------SCNSDHPLHNWTTGA---GRDVVPLNVTRHYYFIS 110 (171)
Q Consensus 51 ~F~vGD~LvF~y~~~----~hsV~~V~~-~~Y~------------~C~~~~p~~~~~~G~---g~~~v~L~~~g~~YFic 110 (171)
+++.||++.|...+. .|.....++ ..+. .|....+ ..+|. .+.+++.+++|+|||.|
T Consensus 55 ~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~---~~~g~~~~~~~tf~f~~aGtywyhC 131 (148)
T TIGR03095 55 VIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP---PKSGKFGYTDFTYHFSTAGTYWYLC 131 (148)
T ss_pred EEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC---CCCCccceeEEEEECCCCeEEEEEc
Confidence 468899999988753 466655431 1110 0111111 11120 12467778999999999
Q ss_pred Cc-CcCcCCCeEEEEee
Q 030811 111 GK-GFCYGGMKLAVRVE 126 (171)
Q Consensus 111 ~~-gHC~~GmKl~I~V~ 126 (171)
.. +|=+.||.-.|.|.
T Consensus 132 ~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 132 TYPGHAENGMYGKIVVK 148 (148)
T ss_pred CChhHHHCCCEEEEEEC
Confidence 99 99999999988874
No 12
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.74 E-value=0.074 Score=44.05 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=48.8
Q ss_pred eeeCCEEEEEeecC---CceEEEE-ccccCCCcCCC---CCCcc---ccCCC--------cce-e-EE-cccCceEEEEe
Q 030811 52 FYNGDWLFFVYDRN---QMNVLEV-NKTDYESCNSD---HPLHN---WTTGA--------GRD-V-VP-LNVTRHYYFIS 110 (171)
Q Consensus 52 F~vGD~LvF~y~~~---~hsV~~V-~~~~Y~~C~~~---~p~~~---~~~G~--------g~~-~-v~-L~~~g~~YFic 110 (171)
.-.|-++.|+|.+. .|++..| +...+.++-.- +.+.. .++|+ |.. . +. -..+|+||++|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 34788888888653 6999888 33444444321 11110 01111 111 2 22 23699999999
Q ss_pred Cc-CcCcCCCeEEEEeeCCCC
Q 030811 111 GK-GFCYGGMKLAVRVENPPP 130 (171)
Q Consensus 111 ~~-gHC~~GmKl~I~V~~~~~ 130 (171)
+. ||=+.||-..+.|.+.-.
T Consensus 170 ~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred cCCChhhcCCEEEEEEecCcc
Confidence 99 999999999999886544
No 13
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.30 E-value=0.034 Score=40.41 Aligned_cols=64 Identities=16% Similarity=0.066 Sum_probs=29.9
Q ss_pred cCCceeeCC--EEEEEeec-CCceEEEEccccCCCcCCCCCCccccCCCcceeEEc--ccCceEEEEeCc-CcCcCCCeE
Q 030811 48 KDKHFYNGD--WLFFVYDR-NQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPL--NVTRHYYFISGK-GFCYGGMKL 121 (171)
Q Consensus 48 ~~~~F~vGD--~LvF~y~~-~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v~L--~~~g~~YFic~~-gHC~~GmKl 121 (171)
+..+++.|+ +|+|+... ..|++.. .+ .+-......|. ..++++ .++|.|=|.|+. .+ ||-
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~--------~~~~~~l~~g~-~~~~~f~~~~~G~y~~~C~~~~~----m~G 100 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVI-PD--------LGISKVLPPGE-TATVTFTPLKPGEYEFYCTMHPN----MKG 100 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEE-GG--------GTEEEEE-TT--EEEEEEEE-S-EEEEEB-SSS-T----TB-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEE-CC--------CceEEEECCCC-EEEEEEcCCCCEEEEEEcCCCCc----cee
Confidence 457899999 55665543 4566643 22 11112334443 234555 899999999996 52 666
Q ss_pred EEEe
Q 030811 122 AVRV 125 (171)
Q Consensus 122 ~I~V 125 (171)
.|.|
T Consensus 101 ~liV 104 (104)
T PF13473_consen 101 TLIV 104 (104)
T ss_dssp ----
T ss_pred cccC
Confidence 6554
No 14
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=93.98 E-value=0.024 Score=44.75 Aligned_cols=74 Identities=28% Similarity=0.548 Sum_probs=43.4
Q ss_pred ceeeCCEEEEEeec---C--------CceEEEEccccCCCcCCC-CCCccc------c-CCCcceeEE------------
Q 030811 51 HFYNGDWLFFVYDR---N--------QMNVLEVNKTDYESCNSD-HPLHNW------T-TGAGRDVVP------------ 99 (171)
Q Consensus 51 ~F~vGD~LvF~y~~---~--------~hsV~~V~~~~Y~~C~~~-~p~~~~------~-~G~g~~~v~------------ 99 (171)
..++||.|-+-=+. . ...+++|++++|+.|+.. ++...+ . .|+ ..++
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~--~kft~kFq~fSP~p~G 102 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGP--KKFTIKFQEFSPFPLG 102 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSS--EEEEEESSSS-SSTTS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCC--cEEEEEEEECCCCCCC
Confidence 56789999986543 2 345789999999999952 221111 1 111 2222
Q ss_pred --cccCceEEEEeCc-Cc-----------Cc-CCCeEEEEee
Q 030811 100 --LNVTRHYYFISGK-GF-----------CY-GGMKLAVRVE 126 (171)
Q Consensus 100 --L~~~g~~YFic~~-gH-----------C~-~GmKl~I~V~ 126 (171)
......||||+.- ++ |. ..|||.+.|.
T Consensus 103 ~EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 103 LEFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp SS--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eeecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 2234579999985 32 75 4799999875
No 15
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=91.08 E-value=0.4 Score=39.55 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=25.9
Q ss_pred ccCceEEEEeCc-CcCcCCCeEEEEeeCCCC
Q 030811 101 NVTRHYYFISGK-GFCYGGMKLAVRVENPPP 130 (171)
Q Consensus 101 ~~~g~~YFic~~-gHC~~GmKl~I~V~~~~~ 130 (171)
..+|.||++|+. ||-+.||=..+.|.+.-.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 489999999999 999999988888876443
No 16
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=91.03 E-value=0.12 Score=38.01 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=18.9
Q ss_pred CccchhHHHHHHHHHHHHhhccccceeEE
Q 030811 1 MRAGMTVAAAAVLLVAMTILVPEVDATRW 29 (171)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~a~A~~~ 29 (171)
|+ +|..++++++|++++++++.++|++-
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 66 77777777777666666666666544
No 17
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=90.82 E-value=0.74 Score=36.03 Aligned_cols=59 Identities=5% Similarity=-0.066 Sum_probs=35.8
Q ss_pred ccCCceeeCCEEEEEeecC---CceEEEEccccCCCcCCCCCCccccCCCcce--eEEcccCceEEEEeCcCcCc
Q 030811 47 AKDKHFYNGDWLFFVYDRN---QMNVLEVNKTDYESCNSDHPLHNWTTGAGRD--VVPLNVTRHYYFISGKGFCY 116 (171)
Q Consensus 47 a~~~~F~vGD~LvF~y~~~---~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~--~v~L~~~g~~YFic~~gHC~ 116 (171)
.+.-+++.||.+.+.+.+. .|++.. .+|. . ......|. .. +++.+++|.|.|.|+ -||.
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---i---s~~I~pGe-t~TitF~adKpG~Y~y~C~-~HP~ 123 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---I---SEVIKAGE-TKTISFKADKAGAFTIWCQ-LHPK 123 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---c---ceEECCCC-eEEEEEECCCCEEEEEeCC-CCCh
Confidence 4556789999998876542 355433 2231 1 12223343 22 466789999999999 4553
No 18
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=88.79 E-value=0.71 Score=37.07 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=49.3
Q ss_pred ccCCceeeCCEEEEEeecC---CceEEEE--c--cccC------CC--cCCCCCCccccCCC-cceeEEcccCceEEEEe
Q 030811 47 AKDKHFYNGDWLFFVYDRN---QMNVLEV--N--KTDY------ES--CNSDHPLHNWTTGA-GRDVVPLNVTRHYYFIS 110 (171)
Q Consensus 47 a~~~~F~vGD~LvF~y~~~---~hsV~~V--~--~~~Y------~~--C~~~~p~~~~~~G~-g~~~v~L~~~g~~YFic 110 (171)
.++..++.|-++.|.-.+. .|....- + ..-+ +. =+..+. ..+..|. ++-++.++++|.|=|+|
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~-v~L~PG~s~elvv~ft~~g~ye~~C 140 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNT-VTLAPGKSGELVVVFTGAGKYEFAC 140 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcce-eEeCCCCcEEEEEEecCCccEEEEe
Confidence 3556788999998876653 3444221 0 0001 00 111111 1234443 23467788999999999
Q ss_pred Cc-CcCcCCCeEEEEee
Q 030811 111 GK-GFCYGGMKLAVRVE 126 (171)
Q Consensus 111 ~~-gHC~~GmKl~I~V~ 126 (171)
.. ||=+.||.-.|+|.
T Consensus 141 ~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 141 NIPGHYEAGMVGEITVS 157 (158)
T ss_pred cCCCcccCCcEEEEEeC
Confidence 99 99999999999986
No 19
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=86.10 E-value=6 Score=35.83 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=20.4
Q ss_pred eEEcccCceEEEEeCcCcCcCCCeEEEEeeCC
Q 030811 97 VVPLNVTRHYYFISGKGFCYGGMKLAVRVENP 128 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~GmKl~I~V~~~ 128 (171)
+++| ++|+|-|+|+. | ..||-.|+|..+
T Consensus 91 ~~~L-~pGtY~~~C~~-~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 91 TANL-QPGEYDMTCGL-L--TNPKGKLIVKGE 118 (375)
T ss_pred EEec-CCceEEeecCc-C--CCCCceEEEeCC
Confidence 4556 79999999976 4 335777888754
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=84.12 E-value=4.1 Score=35.52 Aligned_cols=77 Identities=14% Similarity=0.041 Sum_probs=47.9
Q ss_pred CceeeCCEEEEEeecC-----CceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCc-----CcCcCC
Q 030811 50 KHFYNGDWLFFVYDRN-----QMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGK-----GFCYGG 118 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~-----gHC~~G 118 (171)
-+++.||++..++.+. .|++..=-.... +..........|.. ...|+++.+|+|||-|.. .|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 4678999999887654 466533111000 11112222344531 125778899999999994 477889
Q ss_pred CeEEEEeeCCC
Q 030811 119 MKLAVRVENPP 129 (171)
Q Consensus 119 mKl~I~V~~~~ 129 (171)
|.-.+.|....
T Consensus 138 l~G~liV~~~~ 148 (311)
T TIGR02376 138 MNGAIMVLPRE 148 (311)
T ss_pred cceEEEeeccC
Confidence 99999998643
No 21
>PRK02888 nitrous-oxide reductase; Validated
Probab=80.54 E-value=5.4 Score=38.53 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=43.1
Q ss_pred CCceeeCCEEEEEeecC------CceEEEEccccCCCcCCCCCCccccCCC-cceeEEcccCceEEEEeCcCcCc---CC
Q 030811 49 DKHFYNGDWLFFVYDRN------QMNVLEVNKTDYESCNSDHPLHNWTTGA-GRDVVPLNVTRHYYFISGKGFCY---GG 118 (171)
Q Consensus 49 ~~~F~vGD~LvF~y~~~------~hsV~~V~~~~Y~~C~~~~p~~~~~~G~-g~~~v~L~~~g~~YFic~~gHC~---~G 118 (171)
.-+++.||.+.|..++- .|.... ..|. -......|. ...+|+.+++|.|+++|+. .|- .+
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n------I~~dv~PG~t~svtF~adkPGvy~~~Cte-fCGa~H~~ 625 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG------VNMEVAPQATASVTFTADKPGVYWYYCTW-FCHALHME 625 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceee---cccC------ccEEEcCCceEEEEEEcCCCEEEEEECCc-ccccCccc
Confidence 45789999999999862 244333 1221 101112232 1235778999999999995 343 37
Q ss_pred CeEEEEeeC
Q 030811 119 MKLAVRVEN 127 (171)
Q Consensus 119 mKl~I~V~~ 127 (171)
|+-.|.|++
T Consensus 626 M~G~~iVep 634 (635)
T PRK02888 626 MRGRMLVEP 634 (635)
T ss_pred ceEEEEEEe
Confidence 999998874
No 22
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=79.35 E-value=3.6 Score=31.04 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=38.9
Q ss_pred CceeeCCEEEEEeec--CCceEEEEccccCCCcCCCCCCcc-ccCCC-cceeEEcccCceEEEEeCcCcCcCC---CeEE
Q 030811 50 KHFYNGDWLFFVYDR--NQMNVLEVNKTDYESCNSDHPLHN-WTTGA-GRDVVPLNVTRHYYFISGKGFCYGG---MKLA 122 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~--~~hsV~~V~~~~Y~~C~~~~p~~~-~~~G~-g~~~v~L~~~g~~YFic~~gHC~~G---mKl~ 122 (171)
-.+..|+.+.|.-++ -.|+...- ++. ++. .-.|. ....++.+++|.|++.|. ..|..| |+..
T Consensus 48 l~lp~g~~v~~~ltS~DViHsf~ip---~~~-------~k~d~~PG~~~~~~~~~~~~G~y~~~C~-e~CG~gH~~M~~~ 116 (120)
T PF00116_consen 48 LVLPAGQPVRFHLTSEDVIHSFWIP---ELG-------IKMDAIPGRTNSVTFTPDKPGTYYGQCA-EYCGAGHSFMPGK 116 (120)
T ss_dssp EEEETTSEEEEEEEESSS-EEEEET---TCT-------EEEEEBTTCEEEEEEEESSSEEEEEEE--SSSSTTGGG-EEE
T ss_pred ecccccceEeEEEEcCCcccccccc---ccC-------cccccccccceeeeeeeccCCcEEEcCc-cccCcCcCCCeEE
Confidence 356789999888875 35666541 111 111 11221 124577789999999999 577765 8888
Q ss_pred EEe
Q 030811 123 VRV 125 (171)
Q Consensus 123 I~V 125 (171)
|.|
T Consensus 117 v~V 119 (120)
T PF00116_consen 117 VIV 119 (120)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 23
>PLN02604 oxidoreductase
Probab=77.05 E-value=25 Score=33.21 Aligned_cols=80 Identities=10% Similarity=0.091 Sum_probs=48.0
Q ss_pred CCceeeCCEEEEEeecCC----ceEE-----EEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCc-CcCcC
Q 030811 49 DKHFYNGDWLFFVYDRNQ----MNVL-----EVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGK-GFCYG 117 (171)
Q Consensus 49 ~~~F~vGD~LvF~y~~~~----hsV~-----~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~-gHC~~ 117 (171)
.-.++.||+++++..+.. |++. +.....+|. ...-.......|.. ...|+++.+|+|||-|-. .|-..
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG-~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 134 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG-TEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREA 134 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC-CCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhC
Confidence 457889999999887541 2332 111111121 00000011233421 135778899999999999 88899
Q ss_pred CCeEEEEeeCCC
Q 030811 118 GMKLAVRVENPP 129 (171)
Q Consensus 118 GmKl~I~V~~~~ 129 (171)
||.-.|.|..+.
T Consensus 135 Gl~G~liV~~~~ 146 (566)
T PLN02604 135 GLYGSIRVSLPR 146 (566)
T ss_pred CCeEEEEEEecC
Confidence 999999998653
No 24
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=75.51 E-value=5.7 Score=32.31 Aligned_cols=67 Identities=12% Similarity=-0.037 Sum_probs=40.0
Q ss_pred ceeeCCEEEEEeecC--CceEEEEccccCCCcCCCCCCccc-cCCC-cceeEEcccCceEEEEeCcCcCc---CCCeEEE
Q 030811 51 HFYNGDWLFFVYDRN--QMNVLEVNKTDYESCNSDHPLHNW-TTGA-GRDVVPLNVTRHYYFISGKGFCY---GGMKLAV 123 (171)
Q Consensus 51 ~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~~~p~~~~-~~G~-g~~~v~L~~~g~~YFic~~gHC~---~GmKl~I 123 (171)
.+.+|+.+.|.-++. .|+...-+ -.++.. -.|- ....++.+++|.|++.|+. .|. ..|++.|
T Consensus 120 ~vp~g~~v~~~~ts~DV~Hsf~ip~----------~~~k~da~PG~~~~~~~~~~~~G~y~~~c~e-~cG~~h~~M~~~v 188 (201)
T TIGR02866 120 VVPAGTPVRLQVTSKDVIHSFWVPE----------LGGKIDAIPGQYNALWFNADEPGVYYGYCAE-LCGAGHSLMLFKV 188 (201)
T ss_pred EEEcCCEEEEEEEeCchhhcccccc----------cCceEEecCCcEEEEEEEeCCCEEEEEEehh-hCCcCccCCeEEE
Confidence 567888888887742 23332211 011111 1221 1135678999999999995 444 4699999
Q ss_pred EeeCC
Q 030811 124 RVENP 128 (171)
Q Consensus 124 ~V~~~ 128 (171)
.|.++
T Consensus 189 ~v~~~ 193 (201)
T TIGR02866 189 VVVER 193 (201)
T ss_pred EEECH
Confidence 98753
No 25
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=74.06 E-value=14 Score=28.58 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=20.7
Q ss_pred ceeEEcc----cCc-eEEEEeCc-CcCcCCCeEEEE
Q 030811 95 RDVVPLN----VTR-HYYFISGK-GFCYGGMKLAVR 124 (171)
Q Consensus 95 ~~~v~L~----~~g-~~YFic~~-gHC~~GmKl~I~ 124 (171)
+++|+++ ++| .|=|+|+. ||=. .||-.++
T Consensus 90 s~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 90 KTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred eEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 4556554 356 59999999 9986 6887654
No 26
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=73.25 E-value=5.6 Score=32.67 Aligned_cols=32 Identities=9% Similarity=0.034 Sum_probs=25.8
Q ss_pred eEEcccCceEEEEeCcCcCcC---CCeEEEEeeCCC
Q 030811 97 VVPLNVTRHYYFISGKGFCYG---GMKLAVRVENPP 129 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~---GmKl~I~V~~~~ 129 (171)
.++.+++|.|+..|. ..|.. .|++.|.|.++.
T Consensus 159 ~~~~~~~G~y~g~C~-e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCS-ELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEee-hhhCcCcccCcEEEEEEcCC
Confidence 466789999999999 56654 499999998654
No 27
>PLN02354 copper ion binding / oxidoreductase
Probab=72.06 E-value=34 Score=32.38 Aligned_cols=77 Identities=9% Similarity=0.078 Sum_probs=47.0
Q ss_pred CceeeCCEEEEEeecCC--------ceEEEEccccCCCcC-CCCCCccccCCCc-ceeEEc-ccCceEEEEeCc-CcCcC
Q 030811 50 KHFYNGDWLFFVYDRNQ--------MNVLEVNKTDYESCN-SDHPLHNWTTGAG-RDVVPL-NVTRHYYFISGK-GFCYG 117 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~C~-~~~p~~~~~~G~g-~~~v~L-~~~g~~YFic~~-gHC~~ 117 (171)
..++.||+|+.+..+.. |-+.|-.....|.=- +.-|+. .|.. ...|++ +..|+||+-+-. .+-..
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~---PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~ 136 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIP---PGTNFTYHFQPKDQIGSYFYYPSTGMHRAA 136 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCC---CCCcEEEEEEeCCCCcceEEecCccceecC
Confidence 36789999998886532 344443222233200 011332 2321 135666 478999999988 77788
Q ss_pred CCeEEEEeeCCC
Q 030811 118 GMKLAVRVENPP 129 (171)
Q Consensus 118 GmKl~I~V~~~~ 129 (171)
||.-.|.|..+.
T Consensus 137 Gl~G~lII~~~~ 148 (552)
T PLN02354 137 GGFGGLRVNSRL 148 (552)
T ss_pred CccceEEEcCCc
Confidence 999999998654
No 28
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=68.93 E-value=5.4 Score=29.77 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=45.1
Q ss_pred CceeeCCEEEEEeecC---CceEEEE----ccc-cCCCcCCCCCCccccCCCc-ceeEEccc-CceEEEEeCc-CcCcCC
Q 030811 50 KHFYNGDWLFFVYDRN---QMNVLEV----NKT-DYESCNSDHPLHNWTTGAG-RDVVPLNV-TRHYYFISGK-GFCYGG 118 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~---~hsV~~V----~~~-~Y~~C~~~~p~~~~~~G~g-~~~v~L~~-~g~~YFic~~-gHC~~G 118 (171)
-.++.||+|..++.+. .+++.-= +.. ..|. ....+......|.. ...++++. +|+|||-|-. +|=..|
T Consensus 28 I~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG-~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G 106 (117)
T PF07732_consen 28 IRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDG-VPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG 106 (117)
T ss_dssp EEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSG-GTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred EEEEcCCeeEEEEEeccccccccccceeeeeeeeecCC-cccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence 4678999999999752 3444221 111 1111 00011112233321 13577777 9999999998 743489
Q ss_pred CeEEEEeeCC
Q 030811 119 MKLAVRVENP 128 (171)
Q Consensus 119 mKl~I~V~~~ 128 (171)
|--+|.|.+.
T Consensus 107 L~G~~iV~~~ 116 (117)
T PF07732_consen 107 LYGAIIVEPP 116 (117)
T ss_dssp EEEEEEEE-T
T ss_pred CEEEEEEcCC
Confidence 9999988754
No 29
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=67.91 E-value=16 Score=31.21 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=55.1
Q ss_pred EecCCCCCCCC-CCccccccCC-ceeeCCEEEEEeecC--CceEEEEccccCCCcCCCCCCccccCCC-cceeEEcccCc
Q 030811 30 IVGANQGWTNN-VNYTIWAKDK-HFYNGDWLFFVYDRN--QMNVLEVNKTDYESCNSDHPLHNWTTGA-GRDVVPLNVTR 104 (171)
Q Consensus 30 ~VGg~~GW~~~-~~Y~~Wa~~~-~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~~~p~~~~~~G~-g~~~v~L~~~g 104 (171)
++|-.-.|.+. ++|.-+..+. .+.+|..+.|+-++. -|+.... +-..+-=. -.|- ....++.+++|
T Consensus 117 v~~~qw~W~f~Yp~~~~~t~n~l~lPv~~~V~f~ltS~DViHsF~IP-~l~~k~d~--------iPG~~~~~~~~~~~~G 187 (247)
T COG1622 117 VTAYQWKWLFIYPDYGIATVNELVLPVGRPVRFKLTSADVIHSFWIP-QLGGKIDA--------IPGMTTELWLTANKPG 187 (247)
T ss_pred EEEEEEEEEEEccCcCccccceEEEeCCCeEEEEEEechhceeEEec-CCCceeee--------cCCceEEEEEecCCCe
Confidence 34444456553 3455555544 788999999999863 3444332 11111100 1121 12457889999
Q ss_pred eEEEEeCcCcCc---CCCeEEEEeeCCCC
Q 030811 105 HYYFISGKGFCY---GGMKLAVRVENPPP 130 (171)
Q Consensus 105 ~~YFic~~gHC~---~GmKl~I~V~~~~~ 130 (171)
.|+.+|.. .|. ..|++.|.|.+...
T Consensus 188 ~Y~g~Cae-~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 188 TYRGICAE-YCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEEcHh-hcCCCcccceEEEEEEcHHH
Confidence 99999994 555 45999999987554
No 30
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=67.18 E-value=3.2 Score=25.08 Aligned_cols=19 Identities=21% Similarity=0.620 Sum_probs=11.1
Q ss_pred ccccccCCceeeCCEEEEE
Q 030811 43 YTIWAKDKHFYNGDWLFFV 61 (171)
Q Consensus 43 Y~~Wa~~~~F~vGD~LvF~ 61 (171)
|.+|..+++...||.+.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5689999999999998753
No 31
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=61.79 E-value=8.5 Score=28.98 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=18.6
Q ss_pred CceeeCCEEEEEeec-CCceEEEE-ccccCCC
Q 030811 50 KHFYNGDWLFFVYDR-NQMNVLEV-NKTDYES 79 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~-~~hsV~~V-~~~~Y~~ 79 (171)
+.|++||.|+|+--. +.--+++| .-..|++
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~s 61 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKVVDIRKYDS 61 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEEEEEEecCC
Confidence 689999999996643 22223444 3455544
No 32
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=61.03 E-value=32 Score=32.24 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=47.6
Q ss_pred CceeeCCEEEEEeecCC----ceEE----EEcccc-CCCc--CCCCCCccccCCCc-ceeEEcccCceEEEEeCc-CcCc
Q 030811 50 KHFYNGDWLFFVYDRNQ----MNVL----EVNKTD-YESC--NSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGK-GFCY 116 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~----hsV~----~V~~~~-Y~~C--~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~-gHC~ 116 (171)
-+++.||.|+++..+.. +++. .+.... .|.= -..-++ ..|.. ...|+++.+|+|||-|-. .|-.
T Consensus 34 i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I---~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~ 110 (541)
T TIGR03388 34 IRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAI---NPGETFIYNFVVDRPGTYFYHGHYGMQRS 110 (541)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCc---CCCCEEEEEEEcCCCEEEEEEecchHHhh
Confidence 46889999999887542 2221 111111 1110 000122 33421 135788899999999998 8889
Q ss_pred CCCeEEEEeeCCC
Q 030811 117 GGMKLAVRVENPP 129 (171)
Q Consensus 117 ~GmKl~I~V~~~~ 129 (171)
.||.-.|.|..+.
T Consensus 111 ~Gl~G~liV~~~~ 123 (541)
T TIGR03388 111 AGLYGSLIVDVPD 123 (541)
T ss_pred ccceEEEEEecCC
Confidence 9999999998653
No 33
>PLN02991 oxidoreductase
Probab=57.65 E-value=1.2e+02 Score=28.63 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=45.8
Q ss_pred CceeeCCEEEEEeecCC--------ceEEEEccccCCCcC-CCCCCccccCCCc-ceeEEc-ccCceEEEEeCc-CcCcC
Q 030811 50 KHFYNGDWLFFVYDRNQ--------MNVLEVNKTDYESCN-SDHPLHNWTTGAG-RDVVPL-NVTRHYYFISGK-GFCYG 117 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~C~-~~~p~~~~~~G~g-~~~v~L-~~~g~~YFic~~-gHC~~ 117 (171)
..++.||+|+.+..+.. |-+.|......|.=- ..-|+. .|.. ...|++ +.+|+|||-+-. .+-..
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~---PG~sftY~F~~~~q~GT~WYHsH~~~q~~~ 137 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIP---PGKNYTYALQVKDQIGSFYYFPSLGFHKAA 137 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccC---CCCcEEEEEEeCCCCcceEEecCcchhhhC
Confidence 46889999998887542 334433222223210 011332 2321 135777 479999999887 55556
Q ss_pred CCeEEEEeeCCC
Q 030811 118 GMKLAVRVENPP 129 (171)
Q Consensus 118 GmKl~I~V~~~~ 129 (171)
|+.-.|.|..+.
T Consensus 138 Gl~G~lIV~~~~ 149 (543)
T PLN02991 138 GGFGAIRISSRP 149 (543)
T ss_pred CCeeeEEEeCCc
Confidence 888888888654
No 34
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=52.80 E-value=32 Score=32.83 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=47.2
Q ss_pred ccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCC----Cccc-cCCCcceeEEcccCceEEEEeC
Q 030811 47 AKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHP----LHNW-TTGAGRDVVPLNVTRHYYFISG 111 (171)
Q Consensus 47 a~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p----~~~~-~~G~g~~~v~L~~~g~~YFic~ 111 (171)
.++++|.--|.+.|+|++....++.+...+.|.-+.+.- +..+ ++|. +..|+|.+.|+.|=++=
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-s~~V~L~k~GPVhdv~W 278 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-SVSVPLLKEGPVHDVTW 278 (566)
T ss_pred hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-eEEEecCCCCCceEEEE
Confidence 478999999999999999888888888888777665432 1111 3453 45799999999775553
No 35
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=52.62 E-value=9 Score=26.93 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.5
Q ss_pred cCCceeeCCEEEEE
Q 030811 48 KDKHFYNGDWLFFV 61 (171)
Q Consensus 48 ~~~~F~vGD~LvF~ 61 (171)
.++.|+|||.|+++
T Consensus 25 NDRdf~VGD~L~L~ 38 (72)
T PF12961_consen 25 NDRDFQVGDILVLR 38 (72)
T ss_pred cCCCCCCCCEEEEE
Confidence 45789999999874
No 36
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=51.90 E-value=49 Score=31.77 Aligned_cols=77 Identities=8% Similarity=0.034 Sum_probs=47.2
Q ss_pred CceeeCCEEEEEeecCC--------ceEEEEccccCCCc-CCCCCCccccCCCc-ceeEEc-ccCceEEEEeCc-CcCcC
Q 030811 50 KHFYNGDWLFFVYDRNQ--------MNVLEVNKTDYESC-NSDHPLHNWTTGAG-RDVVPL-NVTRHYYFISGK-GFCYG 117 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~C-~~~~p~~~~~~G~g-~~~v~L-~~~g~~YFic~~-gHC~~ 117 (171)
-.++.||+|+.+..+.. |-+.|......|.= .+.-|+. .|.. ...|++ ++.|+||+-+-. .+-..
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~---PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~ 138 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIP---AGWNWTYQFQVKDQVGSFFYAPSTALHRAA 138 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcC---CCCcEEEEEEeCCCCceeEeeccchhhhhC
Confidence 35789999998876532 34444322222210 0011332 2321 135777 489999999988 77888
Q ss_pred CCeEEEEeeCCC
Q 030811 118 GMKLAVRVENPP 129 (171)
Q Consensus 118 GmKl~I~V~~~~ 129 (171)
|+.-+|.|..+.
T Consensus 139 Gl~GalII~~~~ 150 (596)
T PLN00044 139 GGYGAITINNRD 150 (596)
T ss_pred cCeeEEEEcCcc
Confidence 999999998654
No 37
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.24 E-value=19 Score=30.00 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=24.4
Q ss_pred eEEcccCceEEEEeCcCcCcCC---CeEEEEeeCC
Q 030811 97 VVPLNVTRHYYFISGKGFCYGG---MKLAVRVENP 128 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~G---mKl~I~V~~~ 128 (171)
.++.+++|.||..|. ..|..| |++.|.|.++
T Consensus 183 ~~~~~~~g~y~~~C~-e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCS-EICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECc-cccCcCcCCCeEEEEEECH
Confidence 467789999999999 466554 9999988753
No 38
>PLN02835 oxidoreductase
Probab=47.18 E-value=90 Score=29.42 Aligned_cols=77 Identities=8% Similarity=0.061 Sum_probs=47.0
Q ss_pred CceeeCCEEEEEeecCC--------ceEEEEccccCCCc-CCCCCCccccCCCc-ceeEEc-ccCceEEEEeCc-CcCcC
Q 030811 50 KHFYNGDWLFFVYDRNQ--------MNVLEVNKTDYESC-NSDHPLHNWTTGAG-RDVVPL-NVTRHYYFISGK-GFCYG 117 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~C-~~~~p~~~~~~G~g-~~~v~L-~~~g~~YFic~~-gHC~~ 117 (171)
.+++.||+|+.+..+.. |-+.+......|.= ...-|+. .|.. ...|++ +.+|+|||=|-. .+-..
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~---PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~ 138 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIP---PNSNYTYKFQTKDQIGTFTYFPSTLFHKAA 138 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCC---CCCcEEEEEEECCCCEeEEEEeCccchhcC
Confidence 46889999998886532 33444322223320 0111333 3421 135665 579999999987 77778
Q ss_pred CCeEEEEeeCCC
Q 030811 118 GMKLAVRVENPP 129 (171)
Q Consensus 118 GmKl~I~V~~~~ 129 (171)
|+.-.+.|..++
T Consensus 139 Gl~G~lIV~~~~ 150 (539)
T PLN02835 139 GGFGAINVYERP 150 (539)
T ss_pred cccceeEEeCCC
Confidence 999999997543
No 39
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=45.99 E-value=78 Score=29.61 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=45.1
Q ss_pred CceeeCCEEEEEeecCC--------ceEEEEccccCCC--cCCCCCCccccCCCc-ceeEEc-ccCceEEEEeCcCcCcC
Q 030811 50 KHFYNGDWLFFVYDRNQ--------MNVLEVNKTDYES--CNSDHPLHNWTTGAG-RDVVPL-NVTRHYYFISGKGFCYG 117 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~--C~~~~p~~~~~~G~g-~~~v~L-~~~g~~YFic~~gHC~~ 117 (171)
-.++.||+|+.+..+.. |-+.|......|. ..+.-|+ ..|.. ...|++ +..|+|||=|-..+...
T Consensus 36 i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI---~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~ 112 (539)
T TIGR03389 36 LYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPI---QPGQSYVYNFTITGQRGTLWWHAHISWLRA 112 (539)
T ss_pred EEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCc---CCCCeEEEEEEecCCCeeEEEecCchhhhc
Confidence 46889999998886532 2222221111121 0001122 23421 135676 48999999999844556
Q ss_pred CCeEEEEeeCCCC
Q 030811 118 GMKLAVRVENPPP 130 (171)
Q Consensus 118 GmKl~I~V~~~~~ 130 (171)
||.-.|.|..+..
T Consensus 113 Gl~G~lIV~~~~~ 125 (539)
T TIGR03389 113 TVYGAIVILPKPG 125 (539)
T ss_pred cceEEEEEcCCCC
Confidence 9999999986543
No 40
>PLN02191 L-ascorbate oxidase
Probab=45.92 E-value=75 Score=30.19 Aligned_cols=34 Identities=6% Similarity=-0.042 Sum_probs=28.8
Q ss_pred eeEEcccCceEEEEeCc-CcCcCCCeEEEEeeCCC
Q 030811 96 DVVPLNVTRHYYFISGK-GFCYGGMKLAVRVENPP 129 (171)
Q Consensus 96 ~~v~L~~~g~~YFic~~-gHC~~GmKl~I~V~~~~ 129 (171)
..|+++++|+|||-|-. .+-..||--.|.|..+.
T Consensus 111 Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~ 145 (574)
T PLN02191 111 YKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAK 145 (574)
T ss_pred EEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCC
Confidence 36788899999999998 78889999999997543
No 41
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=44.20 E-value=58 Score=25.64 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=27.8
Q ss_pred CceeeCCEEEEEee-----cCCceEEEEccccCCCcCCCC
Q 030811 50 KHFYNGDWLFFVYD-----RNQMNVLEVNKTDYESCNSDH 84 (171)
Q Consensus 50 ~~F~vGD~LvF~y~-----~~~hsV~~V~~~~Y~~C~~~~ 84 (171)
...+-||.+++.-. ...|+.+.++....-.|+-..
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 46899999998664 246999999988889999643
No 42
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=43.58 E-value=31 Score=27.85 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=22.8
Q ss_pred eEEcccCceEEEEeCcCcCc---CCCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCY---GGMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~---~GmKl~I~V~~ 127 (171)
.+..+++|.||..|.. .|. ..|.+.|.|.+
T Consensus 116 ~~~~~~~G~y~gqCsE-lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE-MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch-hcCcCccCceEEEEEeC
Confidence 4567899999999995 444 45998888764
No 43
>PLN02168 copper ion binding / pectinesterase
Probab=42.62 E-value=1.1e+02 Score=29.02 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=48.0
Q ss_pred CceeeCCEEEEEeecCC--------ceEEEEccccCCC-cCCCCCCccccCCCc-ceeEEcc-cCceEEEEeCc-CcCcC
Q 030811 50 KHFYNGDWLFFVYDRNQ--------MNVLEVNKTDYES-CNSDHPLHNWTTGAG-RDVVPLN-VTRHYYFISGK-GFCYG 117 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~-C~~~~p~~~~~~G~g-~~~v~L~-~~g~~YFic~~-gHC~~ 117 (171)
-.++.||+|+.+..+.. |-+.+-.....|. -...-|+. .|.. ...|+++ ++|+|||=|-. .+=..
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~---PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~ 135 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPIL---PGTNWTYRFQVKDQIGSYFYFPSLLLQKAA 135 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCC---CCCcEEEEEEeCCCCceEEEecChhhhhhC
Confidence 47889999999987532 4444432222232 00111333 3421 1367774 79999999877 66667
Q ss_pred CCeEEEEeeCCCC
Q 030811 118 GMKLAVRVENPPP 130 (171)
Q Consensus 118 GmKl~I~V~~~~~ 130 (171)
|+.-.+.|..+..
T Consensus 136 GL~G~lII~~~~~ 148 (545)
T PLN02168 136 GGYGAIRIYNPEL 148 (545)
T ss_pred cceeEEEEcCCcc
Confidence 9999999986543
No 44
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=42.59 E-value=28 Score=29.14 Aligned_cols=31 Identities=23% Similarity=0.143 Sum_probs=24.6
Q ss_pred eeEEcccCceEEEEeCcCcCcC---CCeEEEEeeC
Q 030811 96 DVVPLNVTRHYYFISGKGFCYG---GMKLAVRVEN 127 (171)
Q Consensus 96 ~~v~L~~~g~~YFic~~gHC~~---GmKl~I~V~~ 127 (171)
..++.+++|.|+-.|. ..|.. .|++.|.|.+
T Consensus 181 ~~~~~~~~G~y~g~Ca-E~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 181 LHLIANEPGVYDGISA-NYSGPGFSGMKFKAIATD 214 (226)
T ss_pred EEEEeCCCEEEEEEch-hhcCcCccCCeEEEEEEC
Confidence 3577899999999999 55654 4999998875
No 45
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.54 E-value=31 Score=28.82 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=23.3
Q ss_pred eEEcccCceEEEEeCcCcCcC---CCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCYG---GMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~---GmKl~I~V~~ 127 (171)
.++.+++|.||..|+. -|.. -|++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse-~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE-ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec-hhCcCccCCeEEEEEeC
Confidence 5677899999999994 5544 4898888764
No 46
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.52 E-value=35 Score=28.48 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=23.5
Q ss_pred eEEcccCceEEEEeCcCcCcCC---CeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCYGG---MKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~G---mKl~I~V~~ 127 (171)
.++.+++|.||..|+ .-|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cs-E~CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 183 AFLSSRPGSFYGQCS-EICGANHSFMPIVVEFVP 215 (225)
T ss_pred EEEcCCCEEEEEEcc-cccCcCcCCCeEEEEEeC
Confidence 467789999999999 455544 888888765
No 47
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=40.65 E-value=32 Score=28.34 Aligned_cols=32 Identities=9% Similarity=-0.025 Sum_probs=25.3
Q ss_pred eeEEcccCceEEEEeCcCcCcC---CCeEEEEeeCC
Q 030811 96 DVVPLNVTRHYYFISGKGFCYG---GMKLAVRVENP 128 (171)
Q Consensus 96 ~~v~L~~~g~~YFic~~gHC~~---GmKl~I~V~~~ 128 (171)
..++.+++|.||-.|+ ..|.. .|++.|.|.++
T Consensus 172 ~~~~~~~~G~y~g~Ca-e~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 172 WYLQADQVGTYRGRNA-NFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEEeCCCEEEEEEeh-hhcCccccCCeEEEEEeCH
Confidence 3577889999999999 56654 49999988753
No 48
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=40.39 E-value=22 Score=24.67 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=12.7
Q ss_pred ccCCceeeCCEEEEEeecC
Q 030811 47 AKDKHFYNGDWLFFVYDRN 65 (171)
Q Consensus 47 a~~~~F~vGD~LvF~y~~~ 65 (171)
+..+.+++||.++|.+...
T Consensus 69 v~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHCT--TT-EEEEEE-SS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 5678999999999999853
No 49
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.21 E-value=35 Score=28.40 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=23.6
Q ss_pred eEEcccCceEEEEeCcCcCcCC---CeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCYGG---MKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~G---mKl~I~V~~ 127 (171)
.++.+++|.||..|+ .-|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cs-E~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 183 GFFINRPGVFYGQCS-EICGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEcCCCEEEEEECh-hhcCcCcCCCeEEEEEeC
Confidence 567789999999999 456544 898888764
No 50
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=39.98 E-value=1.1e+02 Score=24.19 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=17.1
Q ss_pred CCceeeCCEEEEEeecC----CceEEEEc
Q 030811 49 DKHFYNGDWLFFVYDRN----QMNVLEVN 73 (171)
Q Consensus 49 ~~~F~vGD~LvF~y~~~----~hsV~~V~ 73 (171)
...++.||.++|+.+.+ -|.|..+.
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v~ 86 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEIN 86 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEEE
Confidence 35788999999998653 25555553
No 51
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.82 E-value=38 Score=28.27 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=23.3
Q ss_pred eEEcccCceEEEEeCcCcCcC---CCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCYG---GMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~---GmKl~I~V~~ 127 (171)
.++.+++|.||-.|+. -|.. .|.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE-~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE-ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc-ccccCccCCeEEEEEcC
Confidence 4677899999999994 5554 4888888764
No 52
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.65 E-value=43 Score=28.03 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=23.4
Q ss_pred eEEcccCceEEEEeCcCcCcCC---CeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCYGG---MKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~G---mKl~I~V~~ 127 (171)
.++.+++|.||..|+ .-|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cs-e~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCS-EICGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEcc-cccCcCcCCCeEEEEEeC
Confidence 567789999999999 455544 898888764
No 53
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.33 E-value=34 Score=28.69 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=23.2
Q ss_pred eEEcccCceEEEEeCcCcCc---CCCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCY---GGMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~---~GmKl~I~V~~ 127 (171)
.+..+++|.||..|+. -|. ..|++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e-~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE-ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh-hccccccCCcEEEEEEC
Confidence 4567899999999995 554 45898888764
No 54
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=36.68 E-value=45 Score=28.14 Aligned_cols=30 Identities=10% Similarity=0.177 Sum_probs=23.6
Q ss_pred eEEcccCceEEEEeCcCcCcCC---CeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCYGG---MKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~G---mKl~I~V~~ 127 (171)
.++.+++|.||..|+ ..|..| |++.|.|.+
T Consensus 194 ~~~~~~~G~y~g~C~-e~CG~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 194 GFFIKRPGVFYGQCS-EICGANHSFMPIVIEAVS 226 (240)
T ss_pred EEEcCCCEEEEEEch-hhcCcCccCCeEEEEEEC
Confidence 467789999999999 456554 888888765
No 55
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=36.22 E-value=44 Score=28.01 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=23.0
Q ss_pred eEEcccCceEEEEeCcCcCcC---CCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCYG---GMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~---GmKl~I~V~~ 127 (171)
.++.+++|.||..|+. -|.. -|.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse-~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE-ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc-ccCcCcCCceEEEEEeC
Confidence 4677899999999994 5554 4888887764
No 56
>PLN02792 oxidoreductase
Probab=35.98 E-value=1.5e+02 Score=28.09 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEeecCC--------ceEEEEccccCCC-cCCCCCCccccCCCcceeEEc-ccCceEEEEeCc-CcCcCCC
Q 030811 51 HFYNGDWLFFVYDRNQ--------MNVLEVNKTDYES-CNSDHPLHNWTTGAGRDVVPL-NVTRHYYFISGK-GFCYGGM 119 (171)
Q Consensus 51 ~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~-C~~~~p~~~~~~G~g~~~v~L-~~~g~~YFic~~-gHC~~Gm 119 (171)
.++.||+|+.+..+.. |-+.|......|. -...-|+....+=. ..|++ ++.|+|||-|-. .+-..|+
T Consensus 50 ~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sft--Y~F~~~~q~GT~WYHsH~~~q~~~Gl 127 (536)
T PLN02792 50 RSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYT--YDFQVKDQVGSYFYFPSLAVQKAAGG 127 (536)
T ss_pred EEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEE--EEEEeCCCccceEEecCcchhhhccc
Q ss_pred eEEEEeeCCCCCCCCCC
Q 030811 120 KLAVRVENPPPPPSASP 136 (171)
Q Consensus 120 Kl~I~V~~~~~~p~~~p 136 (171)
.-.+.|...+..|.+-+
T Consensus 128 ~G~liI~~~~~~~~p~~ 144 (536)
T PLN02792 128 YGSLRIYSLPRIPVPFP 144 (536)
T ss_pred ccceEEeCCcccCcCCC
No 57
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=34.90 E-value=26 Score=27.92 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHhhhhhcC
Q 030811 152 LVLPAVFAIGAVWDAFVRFW 171 (171)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~ 171 (171)
-++++++..+++-+|++|||
T Consensus 157 ~~~g~i~~~~a~~la~~r~~ 176 (177)
T PF07798_consen 157 WLVGVIFGCVALVLAILRLW 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999998
No 58
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=33.82 E-value=52 Score=24.17 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=14.0
Q ss_pred cCchhHHHHHHHHHHHhhhh
Q 030811 149 RGQLVLPAVFAIGAVWDAFV 168 (171)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~ 168 (171)
.+-.++...+++..+|++|+
T Consensus 37 vv~v~i~~lvaVg~~YL~y~ 56 (91)
T PF01708_consen 37 VVEVAIFTLVAVGCLYLAYT 56 (91)
T ss_pred EeeeeehHHHHHHHHHHHHH
Confidence 34455567778888888875
No 59
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=33.47 E-value=29 Score=26.64 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=16.2
Q ss_pred CceeeCCEEEEEeecCCce
Q 030811 50 KHFYNGDWLFFVYDRNQMN 68 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~hs 68 (171)
++|++||.+.|-+++..++
T Consensus 41 ~~f~~GDlvLflpt~~~~~ 59 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHNN 59 (129)
T ss_pred ecCCCCCEEEEEecCCCCc
Confidence 5799999999999986553
No 60
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=33.23 E-value=29 Score=29.34 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHHhhhhhcC
Q 030811 151 QLVLPAVFAIGAVWDAFVRFW 171 (171)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (171)
|-++.+|+...|+-++|+|+|
T Consensus 199 qw~~g~v~~~~Al~La~~r~~ 219 (220)
T KOG3156|consen 199 QWLIGVVTGTSALVLAYLRLL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 456789999999999999997
No 61
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=32.76 E-value=35 Score=29.03 Aligned_cols=33 Identities=6% Similarity=0.084 Sum_probs=24.7
Q ss_pred HHHhhccccceeEEEecCCCCCCCCCCcccccc
Q 030811 16 AMTILVPEVDATRWIVGANQGWTNNVNYTIWAK 48 (171)
Q Consensus 16 ~~~~~~~~a~A~~~~VGg~~GW~~~~~Y~~Wa~ 48 (171)
++++-...-+-..|..++.+||.+=++++-|.+
T Consensus 213 ~~~~Y~i~g~~~n~~~~g~~g~e~iP~~dfw~~ 245 (268)
T PF09451_consen 213 FLAAYLIFGSWYNYNRYGARGFELIPHFDFWRS 245 (268)
T ss_pred HHHHHhhhhhheeeccCCCCCceecccHhHHHh
Confidence 344445566778899999999988777777765
No 62
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=32.44 E-value=53 Score=27.47 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=23.3
Q ss_pred eEEcccCceEEEEeCcCcCc---CCCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCY---GGMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~---~GmKl~I~V~~ 127 (171)
.++.+++|.||..|+. -|. ..|.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse-~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 183 GFTITRPGVFYGQCSE-ICGANHSFMPIVLEAVD 215 (228)
T ss_pred EEEeCCCEEEEEEChh-hcCcCccCceeEEEEEC
Confidence 4677899999999994 554 35898888765
No 63
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=32.05 E-value=15 Score=32.05 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCccccccCCceeeCCEEEEEee
Q 030811 8 AAAAVLLVAMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYD 63 (171)
Q Consensus 8 ~~~~~~~~~~~~~~~~a~A~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~ 63 (171)
++++++++++++-...-...+..|-+.+||..=+||.=|+.=-.|. -|-..|...
T Consensus 192 VflIIf~iav~vYfiGG~lYqR~v~garG~eqiPN~~fW~~l~~l~-~Dg~~f~cr 246 (278)
T PF02157_consen 192 VFLIIFFIAVAVYFIGGILYQRFVMGARGWEQIPNYSFWAGLPSLV-ADGCDFVCR 246 (278)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCchhhhCcCHHHHHhhHHHH-HHHHhheec
Confidence 3444444444443334444556677788999999999998766665 366666544
No 64
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=31.92 E-value=1.3e+02 Score=28.75 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=50.7
Q ss_pred CCCCC-CccccccCCceeeCCEEEEEeecC---CceE------EEEccc--cCCCcCCCCCCccccCCCc-ceeEEcccC
Q 030811 37 WTNNV-NYTIWAKDKHFYNGDWLFFVYDRN---QMNV------LEVNKT--DYESCNSDHPLHNWTTGAG-RDVVPLNVT 103 (171)
Q Consensus 37 W~~~~-~Y~~Wa~~~~F~vGD~LvF~y~~~---~hsV------~~V~~~--~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~ 103 (171)
|+++- .|.. ....+++.||.+.+.+.+. .|.+ .++... .|..= ... .....|.. ...|..+.+
T Consensus 488 wtiNG~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~~--~dT-v~V~Pg~t~~~~f~ad~p 563 (587)
T TIGR01480 488 WSFDGEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQVR--KHT-VDVPPGGKRSFRVTADAL 563 (587)
T ss_pred EEECCccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCccccc--CCc-eeeCCCCEEEEEEECCCC
Confidence 88753 3332 2346799999999999763 3433 333211 11100 011 11233321 124677899
Q ss_pred ceEEEEeCc-CcCcCCCeEEEEe
Q 030811 104 RHYYFISGK-GFCYGGMKLAVRV 125 (171)
Q Consensus 104 g~~YFic~~-gHC~~GmKl~I~V 125 (171)
|+++|-|-. .|=+.||--.|.|
T Consensus 564 G~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 564 GRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred eEEEEcCCCHHHHhCcCcEEEEe
Confidence 999999999 8999999877766
No 65
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=29.62 E-value=36 Score=20.34 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=13.8
Q ss_pred ccccccCCceeeCCEEEE
Q 030811 43 YTIWAKDKHFYNGDWLFF 60 (171)
Q Consensus 43 Y~~Wa~~~~F~vGD~LvF 60 (171)
|..|..++.-..||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457888877778998865
No 66
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.36 E-value=56 Score=27.46 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=23.3
Q ss_pred eEEcccCceEEEEeCcCcCcC---CCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCYG---GMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~---GmKl~I~V~~ 127 (171)
.++.+++|.||..|.. -|.. -|.+.|.|.+
T Consensus 187 ~~~~~~~G~y~g~Cse-~CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE-ICGANHSFMPIVIEGVS 219 (234)
T ss_pred EEEeCCCEEEEEEChh-hcCcccccCeeEEEEEC
Confidence 4677899999999994 5554 4888888764
No 67
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=29.18 E-value=4.7e+02 Score=24.29 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=13.3
Q ss_pred HHhhccccceeEEEecCCCC
Q 030811 17 MTILVPEVDATRWIVGANQG 36 (171)
Q Consensus 17 ~~~~~~~a~A~~~~VGg~~G 36 (171)
+.+.+.......|.||+..|
T Consensus 18 ~~~~~~~~~~~~~~vg~~~~ 37 (421)
T PRK09723 18 YTASAGTDDNVSYIVGNYYG 37 (421)
T ss_pred hhhhccccCceEEEEccccc
Confidence 33344556778899999654
No 68
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=28.81 E-value=1.8e+02 Score=27.63 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=12.0
Q ss_pred eEEEEeCc-CcCcCCCe
Q 030811 105 HYYFISGK-GFCYGGMK 120 (171)
Q Consensus 105 ~~YFic~~-gHC~~GmK 120 (171)
++||+|=- +.|+...+
T Consensus 114 t~~~CcCs~~~CN~n~s 130 (534)
T KOG3653|consen 114 TLYFCCCSTDFCNANFS 130 (534)
T ss_pred eEEEEecCCCcccCCcc
Confidence 58888777 99998443
No 69
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.65 E-value=65 Score=26.94 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=23.2
Q ss_pred eEEcccCceEEEEeCcCcCc---CCCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCY---GGMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~---~GmKl~I~V~~ 127 (171)
.+..+++|.||..|+. -|. ..|++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e-~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 183 SFIASRPGVYYGQCSE-ICGANHSFMPIVVEATP 215 (228)
T ss_pred EEEeCCcEEEEEEChh-hcCccccCCceEEEEeC
Confidence 4677899999999995 554 45998888764
No 70
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=28.03 E-value=85 Score=25.23 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=12.8
Q ss_pred CCceeeCCEEEEEee
Q 030811 49 DKHFYNGDWLFFVYD 63 (171)
Q Consensus 49 ~~~F~vGD~LvF~y~ 63 (171)
..+.+.||.++|.-+
T Consensus 48 ~~~~~rGDiVvf~~P 62 (176)
T PRK13838 48 DRPVAVGDLVFICPP 62 (176)
T ss_pred CCCCCCCcEEEEECC
Confidence 468999999999865
No 71
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.54 E-value=94 Score=26.73 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=23.4
Q ss_pred eEEcccCceEEEEeCcCcCc---CCCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCY---GGMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~---~GmKl~I~V~~ 127 (171)
.++.+++|.||-.|.. .|. ..|.+.|.|.+
T Consensus 217 ~~~~~~~G~y~g~CsE-~CG~~Hs~Mpi~v~vv~ 249 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE-ICGANHSFMPIVVESVS 249 (262)
T ss_pred EEEcCCcEEEEEEcch-hcCcCcCCCeEEEEEEC
Confidence 5677899999999994 554 45999988764
No 72
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=27.42 E-value=52 Score=22.36 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=15.2
Q ss_pred ccccccCCceeeCCEEEEEeecC
Q 030811 43 YTIWAKDKHFYNGDWLFFVYDRN 65 (171)
Q Consensus 43 Y~~Wa~~~~F~vGD~LvF~y~~~ 65 (171)
..+-+.-..+++||.+.|.+...
T Consensus 34 v~~~~~l~~l~~Gd~V~F~~~~~ 56 (70)
T PF11604_consen 34 VADPVDLAGLKPGDKVRFTFERT 56 (70)
T ss_dssp --TTSEESS-STT-EEEEEEEEE
T ss_pred cCChhhhhcCCCCCEEEEEEEEC
Confidence 34455667899999999999863
No 73
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=27.39 E-value=86 Score=21.62 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=13.9
Q ss_pred ceeeCCEEEEEeecCCc
Q 030811 51 HFYNGDWLFFVYDRNQM 67 (171)
Q Consensus 51 ~F~vGD~LvF~y~~~~h 67 (171)
+|++||.|.|.+....+
T Consensus 2 ~~~~Ge~v~~~~~~~~~ 18 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRD 18 (83)
T ss_pred cccCCCEEEEEEEeCCC
Confidence 68999999999986443
No 74
>PF15240 Pro-rich: Proline-rich
Probab=27.10 E-value=37 Score=27.86 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhcc
Q 030811 9 AAAVLLVAMTILVP 22 (171)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (171)
|+++|.+|||++.+
T Consensus 2 LlVLLSvALLALSS 15 (179)
T PF15240_consen 2 LLVLLSVALLALSS 15 (179)
T ss_pred hhHHHHHHHHHhhh
Confidence 44444455555544
No 75
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=26.49 E-value=1.6e+02 Score=22.96 Aligned_cols=60 Identities=15% Similarity=-0.026 Sum_probs=31.8
Q ss_pred ceeeCCEEEEEeecCC----ceEEEEccccCCCcCCCCCCccccCCCcceeEEcccCceEEEEe
Q 030811 51 HFYNGDWLFFVYDRNQ----MNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFIS 110 (171)
Q Consensus 51 ~F~vGD~LvF~y~~~~----hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v~L~~~g~~YFic 110 (171)
.+++||.|.|+---.. ..-+.+...+...=+........++.+|...|++.++|.+.+..
T Consensus 146 ~l~~g~~~~~~vl~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a 209 (215)
T PF10670_consen 146 KLKAGDPLPFQVLFDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRA 209 (215)
T ss_pred cccCCCEEEEEEEECCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEE
Confidence 4689998877654222 22233322221111111133334555567899999999977654
No 76
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.31 E-value=30 Score=26.10 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.9
Q ss_pred CCcccccc
Q 030811 41 VNYTIWAK 48 (171)
Q Consensus 41 ~~Y~~Wa~ 48 (171)
..|+.|..
T Consensus 34 ~~gt~w~~ 41 (130)
T PF12273_consen 34 IYGTRWMA 41 (130)
T ss_pred cCCceecC
Confidence 34455544
No 77
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=25.40 E-value=1e+02 Score=21.53 Aligned_cols=38 Identities=26% Similarity=0.552 Sum_probs=30.0
Q ss_pred eEEEecCCC---CCCCC-----------CCccccccCCceeeCCEEEEEeec
Q 030811 27 TRWIVGANQ---GWTNN-----------VNYTIWAKDKHFYNGDWLFFVYDR 64 (171)
Q Consensus 27 ~~~~VGg~~---GW~~~-----------~~Y~~Wa~~~~F~vGD~LvF~y~~ 64 (171)
..++||+.. .|+.. .+|..|...-.+..|..+.|||--
T Consensus 17 ~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 17 SVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 457899854 49862 157899998899999999999963
No 78
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=24.47 E-value=2.3e+02 Score=27.13 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=26.7
Q ss_pred eeEEcccCceEEEEeCc-CcCcCCCeEEEEeeCC
Q 030811 96 DVVPLNVTRHYYFISGK-GFCYGGMKLAVRVENP 128 (171)
Q Consensus 96 ~~v~L~~~g~~YFic~~-gHC~~GmKl~I~V~~~ 128 (171)
..|++..+|+|||-|-. .+=+.|+--.|.|...
T Consensus 130 Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~ 163 (587)
T TIGR01480 130 YRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPA 163 (587)
T ss_pred EEEECCCCeeEEEecCchhHhhccceEEEEECCC
Confidence 35778899999999987 6667799988888753
No 79
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.23 E-value=97 Score=26.08 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=23.4
Q ss_pred eEEcccCceEEEEeCcCcCc---CCCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCY---GGMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~---~GmKl~I~V~~ 127 (171)
.++.+++|.||-.|+. -|. ..|++.|.|.+
T Consensus 186 ~~~~~~~G~y~g~CsE-~CG~~Hs~M~~~v~vv~ 218 (231)
T MTH00080 186 CYSFPMPGVFYGQCSE-ICGANHSFMPIAVEVTL 218 (231)
T ss_pred EEEEcCceEEEEEehh-hcCcCccCCEEEEEEEC
Confidence 4677899999999994 454 45999988764
No 80
>PRK11528 hypothetical protein; Provisional
Probab=24.11 E-value=1.3e+02 Score=25.83 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=20.2
Q ss_pred CCC-CCCCccccccCCceeeC--------CEEEEEeecCCceE
Q 030811 36 GWT-NNVNYTIWAKDKHFYNG--------DWLFFVYDRNQMNV 69 (171)
Q Consensus 36 GW~-~~~~Y~~Wa~~~~F~vG--------D~LvF~y~~~~hsV 69 (171)
||. ...+|-+|.+....+.+ +.|+|.+-. .++.
T Consensus 27 ~w~dis~~yl~W~~~~e~~~~~~~~~~d~~ylelE~g~-~~~w 68 (254)
T PRK11528 27 GFANISLNYLDWTSRTTEKSSDKSHKDDFGYLELEGGA-GFSW 68 (254)
T ss_pred cccceeehhhhhhccccccccccCCcCCCcEEEEEccc-cCCe
Confidence 676 57788899887555332 256666653 3444
No 81
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=24.03 E-value=47 Score=28.40 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=18.9
Q ss_pred eeEEcccCceEEEEeCc-CcCcCCC
Q 030811 96 DVVPLNVTRHYYFISGK-GFCYGGM 119 (171)
Q Consensus 96 ~~v~L~~~g~~YFic~~-gHC~~Gm 119 (171)
+.+.++..|-+-|+|+. +||+.-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 56778777888888988 9998643
No 82
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.92 E-value=47 Score=29.99 Aligned_cols=14 Identities=36% Similarity=0.460 Sum_probs=11.7
Q ss_pred ceeeCCEEEEEeec
Q 030811 51 HFYNGDWLFFVYDR 64 (171)
Q Consensus 51 ~F~vGD~LvF~y~~ 64 (171)
..+.||+|+|.|+.
T Consensus 134 ~aq~gD~LvfHYSG 147 (362)
T KOG1546|consen 134 SAQPGDSLVFHYSG 147 (362)
T ss_pred cCCCCCEEEEEecC
Confidence 35689999999984
No 83
>PF08980 DUF1883: Domain of unknown function (DUF1883); InterPro: IPR015073 This family consist of hypothetical bacterial proteins. ; PDB: 2B1Y_A.
Probab=22.62 E-value=14 Score=27.27 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=17.5
Q ss_pred CceeeCCEEEEEeecCCceEEEEccccCCC-cCCCCCC---ccccCCCcceeEEcccCceEEEEeCcCcCcCC-CeEEEE
Q 030811 50 KHFYNGDWLFFVYDRNQMNVLEVNKTDYES-CNSDHPL---HNWTTGAGRDVVPLNVTRHYYFISGKGFCYGG-MKLAVR 124 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~-C~~~~p~---~~~~~G~g~~~v~L~~~g~~YFic~~gHC~~G-mKl~I~ 124 (171)
...+-||+++-.-+ ..-+|..++++.|.. ++..... ..++.-+ ..+++...|..|.+=+ .|+..| -+..|+
T Consensus 9 ~~~~~Gd~V~V~ls-~~~nV~LMd~~Nf~~y~~g~~~~y~GG~~~~~P--a~i~VP~sG~W~vvID-~~g~~~~~~~si~ 84 (94)
T PF08980_consen 9 GHLKRGDTVVVRLS-HQANVRLMDDSNFQRYKNGRRFKYIGGVAKRSP--ARITVPYSGHWNVVID-SHGQSGEVEHSIS 84 (94)
T ss_dssp ----TT-------S-SS-------HHHHHHHHHHTT---S-----SSS--------SSS---------TTSSS-------
T ss_pred hccCCCCEEEEEeC-CcccEEEcChhHhhhhccCCcceEEeeecccCc--eEEECCCCceEEEEEE-CCCCcEEEEEEEE
Confidence 46778999999988 478899999888876 5433221 1223322 5677777887666544 577776 456777
Q ss_pred ee
Q 030811 125 VE 126 (171)
Q Consensus 125 V~ 126 (171)
|.
T Consensus 85 v~ 86 (94)
T PF08980_consen 85 VI 86 (94)
T ss_dssp --
T ss_pred ec
Confidence 76
No 84
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.55 E-value=1e+02 Score=25.86 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=22.4
Q ss_pred eEEcccCceEEEEeCcCcCcCC---CeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCYGG---MKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~G---mKl~I~V~~ 127 (171)
.+..+++|.||..|+. -|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse-~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 183 TFIISRPGLYYGQCSE-ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCcEEEEEEchh-hcCcCcCCCeEEEEEEC
Confidence 4567899999999994 55544 888887764
No 85
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=21.87 E-value=1.1e+02 Score=27.20 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=23.8
Q ss_pred eEEcccCceEEEEeCcCcCcC---CCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGKGFCYG---GMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~gHC~~---GmKl~I~V~~ 127 (171)
.++.+++|.|+-.|. ..|.. .|++.|.+..
T Consensus 194 ~~~a~~~G~Y~G~Ca-EyCG~gHs~M~f~v~v~~ 226 (315)
T PRK10525 194 HLIANEPGTYDGISA-SYSGPGFSGMKFKAIATP 226 (315)
T ss_pred EEEcCCCEEEEEECh-hhcCccccCCeEEEEEEC
Confidence 567789999999999 45654 5999988764
No 86
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=21.25 E-value=1.2e+02 Score=17.14 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=12.1
Q ss_pred cchhHHHHHHHHHHHHh
Q 030811 3 AGMTVAAAAVLLVAMTI 19 (171)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (171)
.|++|++.++..+++..
T Consensus 9 sGK~Wv~a~~~~~~l~~ 25 (29)
T TIGR03715 9 SGKQWVFAAITTLALAG 25 (29)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 68999997766655443
No 87
>PRK10883 FtsI repressor; Provisional
Probab=21.11 E-value=5.8e+02 Score=23.52 Aligned_cols=75 Identities=16% Similarity=0.260 Sum_probs=43.4
Q ss_pred CceeeCCEEEEEeecCC--------ceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcc-cCceEEEEeCc-C----c
Q 030811 50 KHFYNGDWLFFVYDRNQ--------MNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLN-VTRHYYFISGK-G----F 114 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~--------hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~-~~g~~YFic~~-g----H 114 (171)
..++.||.|..++.+.. |-+. +.....+ ++-.....|.. ...++++ .+|+|||=+-. + +
T Consensus 79 ir~~~Gd~v~v~v~N~L~~~ttiHwHGl~-~~~~~~~-----g~~~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~q 152 (471)
T PRK10883 79 IRVWKGDDVKLIYSNRLTEPVSMTVSGLQ-VPGPLMG-----GPARMMSPNADWAPVLPIRQNAATCWYHANTPNRMAQH 152 (471)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeECCcc-CCCCCCC-----CccccCCCCCeEEEEEecCCCceeeEEccCCCCchhhh
Confidence 46789999999997643 2222 2211111 11112334431 1234445 48999997764 2 5
Q ss_pred CcCCCeEEEEeeCCCC
Q 030811 115 CYGGMKLAVRVENPPP 130 (171)
Q Consensus 115 C~~GmKl~I~V~~~~~ 130 (171)
-..||.-.+.|..+..
T Consensus 153 v~~GL~G~lII~d~~~ 168 (471)
T PRK10883 153 VYNGLAGMWLVEDEVS 168 (471)
T ss_pred HhcCCeEEEEEeCCcc
Confidence 6689999998886543
No 88
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=20.70 E-value=74 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.367 Sum_probs=28.4
Q ss_pred eEEEecCCC---CCCCC-------CCccccccCCceeeCCEEEEEeec
Q 030811 27 TRWIVGANQ---GWTNN-------VNYTIWAKDKHFYNGDWLFFVYDR 64 (171)
Q Consensus 27 ~~~~VGg~~---GW~~~-------~~Y~~Wa~~~~F~vGD~LvF~y~~ 64 (171)
..|++|+.. .|... .+|..|.....+..|..+.|||-.
T Consensus 17 ~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 17 SVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred eEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 347788743 58742 367789888888899999999953
No 89
>PF02989 DUF228: Lyme disease proteins of unknown function; InterPro: IPR004239 This group comprises proteins of unknown function from Borrelia burgdorferi, the causitive organism of Lyme disease.
Probab=20.67 E-value=56 Score=26.92 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=18.6
Q ss_pred Ccccc--ccCCceeeCCEEEEEee
Q 030811 42 NYTIW--AKDKHFYNGDWLFFVYD 63 (171)
Q Consensus 42 ~Y~~W--a~~~~F~vGD~LvF~y~ 63 (171)
||+-| +.+.+.+.||.|.|+-.
T Consensus 117 nFegyLvak~~~ik~gdkL~fN~~ 140 (184)
T PF02989_consen 117 NFEGYLVAKDSTIKAGDKLIFNKD 140 (184)
T ss_pred CeEEEEEECCCCCCcCcEEEecCC
Confidence 78888 66789999999999754
Done!