Query 030811
Match_columns 171
No_of_seqs 129 out of 832
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 2E-42 6.7E-47 268.4 5.9 110 25-136 2-117 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 1.3E-41 4.5E-46 254.2 6.2 104 25-130 1-107 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 2.5E-40 8.7E-45 249.7 6.7 103 27-131 2-109 (116)
4 2cbp_A Cucumber basic protein; 100.0 7.4E-39 2.5E-43 234.2 6.5 95 27-126 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 1.1E-34 3.6E-39 210.4 7.9 90 27-126 1-91 (91)
6 1bxv_A Plastocyanin; copper pr 99.2 2.9E-11 1E-15 84.0 6.8 86 28-126 4-91 (91)
7 1qhq_A Protein (auracyanin); e 99.2 5.4E-11 1.8E-15 89.8 8.8 97 24-126 14-139 (140)
8 1pmy_A Pseudoazurin; electron 99.0 7E-10 2.4E-14 83.3 7.7 84 32-128 11-95 (123)
9 2cal_A Rusticyanin; iron respi 99.0 4.6E-10 1.6E-14 87.1 6.9 77 49-126 62-154 (154)
10 1paz_A Pseudoazurin precursor; 99.0 1E-09 3.5E-14 82.4 7.7 84 32-128 11-95 (123)
11 1plc_A Plastocyanin; electron 98.9 7E-09 2.4E-13 73.4 8.3 91 28-126 2-99 (99)
12 1iuz_A Plastocyanin; electron 98.9 2.8E-09 9.7E-14 75.7 6.0 92 27-126 2-98 (98)
13 2gim_A Plastocyanin; beta shee 98.9 3.3E-09 1.1E-13 75.7 5.9 91 28-126 5-105 (106)
14 3erx_A Pseudoazurin; copper pr 98.9 3.6E-09 1.2E-13 79.6 6.2 75 48-129 21-96 (123)
15 3tu6_A Pseudoazurin (blue copp 98.8 6.2E-09 2.1E-13 78.8 7.3 86 31-129 11-98 (127)
16 2aan_A Auracyanin A; cupredoxi 98.8 3.4E-08 1.1E-12 74.3 10.4 95 24-126 16-139 (139)
17 1kdj_A Plastocyanin; electron 98.8 1.3E-08 4.4E-13 72.3 7.5 91 28-126 2-102 (102)
18 3ef4_A Pseudoazurin, blue copp 98.8 1.3E-08 4.5E-13 76.9 7.7 85 31-128 10-96 (124)
19 2plt_A Plastocyanin; electron 98.8 6.3E-09 2.1E-13 73.3 5.6 92 27-126 2-98 (98)
20 1byp_A Protein (plastocyanin); 98.8 1.3E-08 4.6E-13 71.8 6.6 91 28-126 2-99 (99)
21 1b3i_A PETE protein, protein ( 98.8 2.5E-08 8.6E-13 70.1 7.8 89 28-126 4-97 (97)
22 1pcs_A Plastocyanin; electron 98.6 1.9E-07 6.7E-12 65.6 8.4 91 28-126 4-98 (98)
23 3c75_A Amicyanin; copper prote 98.3 1.4E-06 4.8E-11 65.5 6.9 70 48-126 60-132 (132)
24 2ux6_A Pseudoazurin; type-1 co 98.3 1.2E-06 4E-11 65.4 6.4 72 48-128 21-93 (122)
25 3cvb_A Plastocyanin; cupredoxi 98.0 3.4E-05 1.2E-09 54.3 8.4 89 28-126 4-104 (105)
26 4hci_A Cupredoxin 1; structura 98.0 7E-06 2.4E-10 58.2 4.4 69 48-126 28-100 (100)
27 3ay2_A Lipid modified azurin p 97.9 6.4E-05 2.2E-09 59.3 9.1 92 27-126 43-166 (167)
28 1iko_P Ephrin-B2; greek KEY, g 97.9 1.1E-05 3.6E-10 64.6 4.4 80 52-131 26-144 (178)
29 1cuo_A Protein (azurin ISO-2); 97.8 0.00024 8.1E-09 53.5 10.6 91 28-126 4-128 (129)
30 1id2_A Amicyanin; beta barrel, 97.8 5.6E-05 1.9E-09 54.3 6.6 70 48-126 34-106 (106)
31 2ov0_A Amicyanin; beta-sandwic 97.7 5.7E-05 2E-09 54.0 5.5 85 26-126 18-105 (105)
32 2iaa_C Azurin; quinoprotein, t 97.4 0.0011 3.8E-08 49.7 9.4 91 28-126 3-127 (128)
33 2ccw_A Azurin II, AZN-2; elect 97.4 0.0012 3.9E-08 49.7 9.2 91 28-126 4-128 (129)
34 1nwp_A Azurin; electron transp 97.3 0.00086 3E-08 50.3 8.1 91 28-126 4-128 (128)
35 3czu_B Ephrin-A1; ATP-binding, 97.1 0.00084 2.9E-08 53.8 6.0 101 23-130 26-163 (182)
36 2x11_B Ephrin-A5; receptor-sig 96.9 0.0012 4E-08 52.7 5.3 81 50-130 52-165 (177)
37 2vsm_B Ephrin-B2; developmenta 96.7 0.0027 9.3E-08 48.7 5.9 76 52-127 25-139 (140)
38 1iby_A Nitrosocyanin; RED copp 96.3 0.0096 3.3E-07 42.3 6.5 68 48-126 38-111 (112)
39 3d12_B Ephrin-B3; beta propell 96.1 0.0045 1.5E-07 47.6 3.9 76 51-126 23-140 (141)
40 1shx_A Ephrin-A5; ephrin signa 96.1 0.011 3.9E-07 45.2 6.0 79 50-128 23-134 (138)
41 2wo3_B Ephrin-A2; transferase- 95.5 0.018 6.2E-07 45.0 5.1 79 51-129 33-145 (157)
42 3fsa_A Azurin; copper, cupredo 95.3 0.19 6.6E-06 37.6 10.2 88 29-126 5-125 (125)
43 2cua_A Protein (CUA); CUA cent 94.7 0.19 6.3E-06 37.7 8.5 69 48-126 60-134 (135)
44 3s8f_B Cytochrome C oxidase su 93.5 0.27 9.1E-06 38.4 7.5 69 48-126 93-167 (168)
45 2dv6_A Nitrite reductase; elec 92.8 0.2 6.9E-06 43.4 6.4 76 48-130 55-135 (447)
46 3sbq_A Nitrous-oxide reductase 91.2 0.7 2.4E-05 43.1 8.3 69 48-127 558-637 (638)
47 1fwx_A Nitrous oxide reductase 90.2 0.42 1.4E-05 44.2 5.9 69 49-128 514-593 (595)
48 3hei_B Ephrin-A1; EPH receptor 87.4 0.49 1.7E-05 35.8 3.6 77 50-126 22-131 (132)
49 1oe1_A Dissimilatory copper-co 76.4 4.3 0.00015 33.7 5.7 34 97-130 286-321 (336)
50 1mzy_A Copper-containing nitri 74.5 6.1 0.00021 32.8 6.1 76 50-128 66-153 (333)
51 1oe1_A Dissimilatory copper-co 74.2 6.2 0.00021 32.7 6.1 77 50-129 67-154 (336)
52 1mzy_A Copper-containing nitri 72.0 6 0.0002 32.8 5.5 34 97-130 286-321 (333)
53 2zoo_A Probable nitrite reduct 70.1 5.2 0.00018 34.4 4.8 75 50-128 62-147 (442)
54 1kbv_A ANIA, major outer membr 68.9 11 0.00038 31.3 6.5 76 50-129 72-158 (327)
55 3iuw_A Activating signal coint 64.8 3.3 0.00011 28.8 2.0 16 50-65 36-52 (83)
56 1fft_B Ubiquinol oxidase; elec 59.3 34 0.0012 28.9 7.8 67 49-126 152-225 (315)
57 3l6w_A Hemocyanin 1; cupredoxi 56.2 8.6 0.00029 34.8 3.6 72 51-126 414-491 (491)
58 3gdc_A Multicopper oxidase; be 54.7 34 0.0012 27.7 6.9 79 50-130 68-157 (288)
59 1yel_A AT1G16640; CESG, protei 54.4 5.4 0.00018 27.8 1.6 19 47-65 73-91 (104)
60 2gsm_B Cytochrome C oxidase su 52.4 13 0.00046 30.5 4.0 31 96-127 213-246 (262)
61 2bw4_A Copper-containing nitri 51.1 21 0.00072 29.4 5.1 77 50-129 73-160 (340)
62 1v54_B Cytochrome C oxidase po 51.0 13 0.00043 30.0 3.6 31 96-127 182-215 (227)
63 3hb3_B Cytochrome C oxidase su 50.1 15 0.0005 31.0 4.0 34 96-129 231-266 (298)
64 1cyx_A CYOA; electron transpor 47.3 22 0.00076 28.4 4.4 65 51-126 44-115 (205)
65 3m62_B UV excision repair prot 46.1 8.9 0.0003 26.8 1.7 21 116-136 63-83 (106)
66 2z0t_A Putative uncharacterize 46.0 8.7 0.0003 27.8 1.7 11 50-60 32-42 (109)
67 4i1k_A B3 domain-containing tr 43.8 11 0.00038 28.2 2.0 26 47-72 112-137 (146)
68 3gdc_A Multicopper oxidase; be 42.9 14 0.00048 30.0 2.7 31 97-127 257-288 (288)
69 1kbv_A ANIA, major outer membr 42.5 19 0.00065 29.8 3.5 34 97-130 275-310 (327)
70 3t9w_A Small laccase, multi-co 39.3 24 0.00081 29.0 3.6 35 101-135 260-295 (299)
71 2hzs_I RNA polymerase II media 38.2 0.48 1.6E-05 25.9 -4.6 19 49-67 4-22 (27)
72 4dny_A Metalloprotease STCE; m 37.9 8.8 0.0003 28.7 0.6 19 54-72 77-95 (126)
73 2zwn_A Two-domain type laccase 37.8 47 0.0016 27.5 5.2 80 51-132 38-131 (339)
74 3g5w_A Multicopper oxidase typ 36.6 34 0.0012 28.2 4.2 80 50-130 36-128 (318)
75 2nms_A CMRF35-like-molecule 1; 36.1 14 0.00047 25.8 1.4 30 101-132 85-116 (124)
76 1sdd_A Coagulation factor V; c 34.0 5.1 0.00017 33.1 -1.4 32 97-128 269-301 (306)
77 2zoo_A Probable nitrite reduct 33.4 39 0.0013 28.9 4.1 34 97-130 265-300 (442)
78 1zpu_A Iron transport multicop 31.9 80 0.0027 28.0 6.0 77 50-129 36-126 (534)
79 2hd9_A UPF0310 protein PH1033; 31.6 13 0.00043 27.9 0.6 43 35-78 19-72 (145)
80 2qcp_X Cation efflux system pr 31.4 26 0.00088 23.6 2.1 18 47-64 49-66 (80)
81 2q9o_A Laccase-1; multicopper 31.3 63 0.0021 28.8 5.2 33 97-129 126-159 (559)
82 2k75_A Uncharacterized protein 31.2 20 0.00068 25.2 1.6 30 28-62 41-70 (106)
83 2bw4_A Copper-containing nitri 30.6 79 0.0027 25.9 5.4 34 97-130 292-327 (340)
84 1xne_A Hypothetical protein PF 30.6 14 0.00047 26.9 0.6 13 50-62 33-45 (113)
85 2vb2_X Copper protein, cation 30.1 27 0.00094 23.9 2.1 21 44-64 54-74 (88)
86 3kw8_A Laccase, putative coppe 29.3 50 0.0017 26.5 3.9 29 102-130 239-268 (276)
87 1aoz_A Ascorbate oxidase; oxid 29.1 1.1E+02 0.0039 27.0 6.5 78 50-129 36-125 (552)
88 4he6_A Peptidase family U32; u 28.8 34 0.0012 23.0 2.4 18 48-65 26-43 (89)
89 3rrq_A Protein PD-1, programme 28.3 41 0.0014 23.3 2.9 11 101-111 85-95 (129)
90 3t6v_A Laccase; beta barrel, o 27.4 1.1E+02 0.0036 27.0 6.0 33 97-129 97-131 (495)
91 3cg8_A Laccase; oxidoreductase 27.1 58 0.002 27.2 4.0 30 101-130 279-309 (343)
92 3pxl_A Laccase; 4-copper prote 25.8 1.2E+02 0.004 26.8 6.0 33 97-129 96-130 (499)
93 3sqr_A Laccase; multicopper ox 25.8 1.2E+02 0.0042 27.4 6.2 33 97-129 156-189 (580)
94 2l55_A SILB,silver efflux prot 25.1 35 0.0012 23.1 1.9 21 44-64 40-60 (82)
95 2l8d_A Lamin-B receptor; DNA b 24.6 59 0.002 21.5 2.8 46 49-101 7-54 (66)
96 2j5w_A Ceruloplasmin, ferroxid 23.7 78 0.0027 30.7 4.7 77 49-130 272-359 (1065)
97 1sdd_B Coagulation factor V; c 22.2 59 0.002 29.4 3.3 31 97-127 296-327 (647)
98 2dv6_A Nitrite reductase; elec 22.2 88 0.003 26.5 4.3 34 97-130 402-436 (447)
99 3g5w_A Multicopper oxidase typ 22.0 1.1E+02 0.0036 25.2 4.6 33 97-129 239-278 (318)
100 2j5w_A Ceruloplasmin, ferroxid 20.7 1.2E+02 0.0042 29.3 5.4 75 49-130 633-720 (1065)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=2e-42 Score=268.39 Aligned_cols=110 Identities=30% Similarity=0.491 Sum_probs=98.7
Q ss_pred ceeEEEecCCCCCCCC---CCccccccCCceeeCCEEEEEeecCCceEEEE-ccccCCCcCCCCCCccccCCCcceeEEc
Q 030811 25 DATRWIVGANQGWTNN---VNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEV-NKTDYESCNSDHPLHNWTTGAGRDVVPL 100 (171)
Q Consensus 25 ~A~~~~VGg~~GW~~~---~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V-~~~~Y~~C~~~~p~~~~~~G~g~~~v~L 100 (171)
+|++|+|||+.||+.+ .||++|+++++|+|||+|+|+|+++.|+|+|| ++++|+.|+.++++..+++|+ ++|+|
T Consensus 2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~--~~v~L 79 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTS--PVIER 79 (138)
T ss_dssp CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCS--CEEEE
T ss_pred CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCC--eEEEe
Confidence 5789999999999998 78999999999999999999999999999999 999999999999999898876 89999
Q ss_pred -ccCceEEEEeCc-CcCcCCCeEEEEeeCCCCCCCCCC
Q 030811 101 -NVTRHYYFISGK-GFCYGGMKLAVRVENPPPPPSASP 136 (171)
Q Consensus 101 -~~~g~~YFic~~-gHC~~GmKl~I~V~~~~~~p~~~p 136 (171)
+++|++||||++ +||++||||+|+|....++++++|
T Consensus 80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~~~~p 117 (138)
T 1jer_A 80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPP 117 (138)
T ss_dssp CCSSEEEEEECCSTTTGGGTCEEEEEEECCC-------
T ss_pred ccCCcCEEEEcCCCCccccCCEEEEEEcCCCCCCCCCC
Confidence 999999999999 999999999999998776444333
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=1.3e-41 Score=254.17 Aligned_cols=104 Identities=38% Similarity=0.736 Sum_probs=96.7
Q ss_pred ceeEEEecCCCCCCCC--CCccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCcceeEEccc
Q 030811 25 DATRWIVGANQGWTNN--VNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNV 102 (171)
Q Consensus 25 ~A~~~~VGg~~GW~~~--~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v~L~~ 102 (171)
+|++|+|||+.||+.+ .||++||++++|++||+|+|+|+++.|+|+||++++|+.|+.++|+..+++|+ ++|+|++
T Consensus 1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~--~~v~L~~ 78 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGA--DSIPLKR 78 (109)
T ss_dssp CCCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSE--EEEECCS
T ss_pred CCcEEEeCCCCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCC--EEEEECC
Confidence 4789999999999998 89999999999999999999999999999999999999999999999898876 8999999
Q ss_pred CceEEEEeCc-CcCcCCCeEEEEeeCCCC
Q 030811 103 TRHYYFISGK-GFCYGGMKLAVRVENPPP 130 (171)
Q Consensus 103 ~g~~YFic~~-gHC~~GmKl~I~V~~~~~ 130 (171)
+|++||||++ +||++||||+|+|.++++
T Consensus 79 ~G~~yFic~~~gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 79 PGTFYFLCGIPGHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp SEEEEEECCSTTTTTTTCEEEEEECC---
T ss_pred CcCEEEECCCCCcccCCCEEEEEEcCCCC
Confidence 9999999999 999999999999976544
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=2.5e-40 Score=249.69 Aligned_cols=103 Identities=28% Similarity=0.476 Sum_probs=94.0
Q ss_pred eEEEecCCCCCCCC---CCccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCcceeEEcccC
Q 030811 27 TRWIVGANQGWTNN---VNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVT 103 (171)
Q Consensus 27 ~~~~VGg~~GW~~~---~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v~L~~~ 103 (171)
++|+|||+.||+.+ .+|++|+++++|++||+|+|+|.++.|+|+||++++|++|+.++|+..+++|+ +.|+|+++
T Consensus 2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~--~~v~l~~~ 79 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPP--VKIMLNTT 79 (116)
T ss_dssp CEEETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSS--EEEECCSC
T ss_pred eEEEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCC--eEEEECCC
Confidence 57999999999973 68999999999999999999999999999999999999999999998888886 99999999
Q ss_pred ceEEEEeCc-CcCcCCCeEEE-EeeCCCCC
Q 030811 104 RHYYFISGK-GFCYGGMKLAV-RVENPPPP 131 (171)
Q Consensus 104 g~~YFic~~-gHC~~GmKl~I-~V~~~~~~ 131 (171)
|++||||++ +||++||||+| +|.+++++
T Consensus 80 G~~yFic~~~~HC~~Gmkl~In~V~~~~~~ 109 (116)
T 1x9u_A 80 GPQYYICTVGDHCRVGQKLSINVVGAGGAG 109 (116)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEECC----
T ss_pred CCEEEECCCCCccccCCEEEEEEECCCCCC
Confidence 999999999 99999999999 88766553
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=7.4e-39 Score=234.23 Aligned_cols=95 Identities=37% Similarity=0.691 Sum_probs=90.4
Q ss_pred eEEEecCCCCCCCCCCccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCcceeEEcccCceE
Q 030811 27 TRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHY 106 (171)
Q Consensus 27 ~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v~L~~~g~~ 106 (171)
++|+|||+.||++ +|++|+++++|++||+|+|+|+++.|+|+||++++|+.|+.++|+..+++|+ ++|+| ++|++
T Consensus 1 ~~~~VG~~~GW~~--~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~--~~v~L-~~g~~ 75 (96)
T 2cbp_A 1 AVYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGR--DQIKL-PKGQS 75 (96)
T ss_dssp CEEETTGGGCSCS--SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSE--EEEEC-CSEEE
T ss_pred CEEEECCcCCCcc--ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCC--eEEEe-cCCCE
Confidence 4799999999997 6999999999999999999999999999999999999999999998888876 89999 89999
Q ss_pred EEEeCc-CcCcCCCeEEEEee
Q 030811 107 YFISGK-GFCYGGMKLAVRVE 126 (171)
Q Consensus 107 YFic~~-gHC~~GmKl~I~V~ 126 (171)
||||++ +||++||||+|+|+
T Consensus 76 yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 76 YFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EEECCSTTTGGGTCEEEEEEC
T ss_pred EEEcCCCCccccCCEEEEEEC
Confidence 999999 99999999999984
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=1.1e-34 Score=210.42 Aligned_cols=90 Identities=36% Similarity=0.660 Sum_probs=84.7
Q ss_pred eEEEecCCCCCCCCCCccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCcceeEEcccCceE
Q 030811 27 TRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHY 106 (171)
Q Consensus 27 ~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v~L~~~g~~ 106 (171)
++|+| ||+.+ ++|+++++|++||+|+|+|+++.|+|+||++++|+.|+.++|+..+++|+ +.|+|+ +|++
T Consensus 1 ~~y~V----gW~~~---~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~--~~v~L~-~g~~ 70 (91)
T 1f56_A 1 AVYNI----GWSFN---VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQ--DRIKLT-RGQN 70 (91)
T ss_dssp CEEEE----ECSSS---CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSE--EEEECC-SEEE
T ss_pred CEEEE----eCCCC---CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCC--cEEEeC-CCCe
Confidence 46889 79987 89999999999999999999999999999999999999999998888876 899996 8999
Q ss_pred EEEeCc-CcCcCCCeEEEEee
Q 030811 107 YFISGK-GFCYGGMKLAVRVE 126 (171)
Q Consensus 107 YFic~~-gHC~~GmKl~I~V~ 126 (171)
||||++ +||++||||+|+|.
T Consensus 71 yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 71 YFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EEECCSTTTTTTTCEEEEEEC
T ss_pred EEEcCCCCccccCCEEEEEEC
Confidence 999999 99999999999984
No 6
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.20 E-value=2.9e-11 Score=84.04 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=62.2
Q ss_pred EEEecCC-CCCCCCCCccccccCCceeeCCEEEEEeec-CCceEEEEccccCCCcCCCCCCccccCCCcceeEEcccCce
Q 030811 28 RWIVGAN-QGWTNNVNYTIWAKDKHFYNGDWLFFVYDR-NQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRH 105 (171)
Q Consensus 28 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v~L~~~g~ 105 (171)
++.+|++ .++.+.+ +..++++||+|.|.+.. ..|+|...+...+. ........|. ...++++++|+
T Consensus 4 ~v~~~~~~~~~~f~P------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~-~~~~~f~~~G~ 71 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGE-TFEATFSEPGT 71 (91)
T ss_dssp EEEESCTTSCSSEES------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTC-EEEEECCSCEE
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCC-EEEEEeCCCEE
Confidence 4567764 4577654 45689999999999875 68999876533221 0111234442 46788999999
Q ss_pred EEEEeCcCcCcCCCeEEEEee
Q 030811 106 YYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 106 ~YFic~~gHC~~GmKl~I~V~ 126 (171)
|+|+|. .||..||+..|.|.
T Consensus 72 y~~~C~-~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 72 YTYYCE-PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EEEECT-TTGGGTCEEEEEEC
T ss_pred EEEEeC-CCccCCCEEEEEEC
Confidence 999999 99999999999984
No 7
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.20 E-value=5.4e-11 Score=89.82 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=65.3
Q ss_pred cceeEEEecCC-CCCCCCCCccccccCCceeeCCEEEEEeec-----CCceEEEEccc-cCCC--------------c--
Q 030811 24 VDATRWIVGAN-QGWTNNVNYTIWAKDKHFYNGDWLFFVYDR-----NQMNVLEVNKT-DYES--------------C-- 80 (171)
Q Consensus 24 a~A~~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-----~~hsV~~V~~~-~Y~~--------------C-- 80 (171)
+.+.++.|+-. .+|.+.+ +..+++.||++.|.+.+ ..|++...+.. ++.. .
T Consensus 14 ~~~~~v~V~~~~~~~~F~P------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQ------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPP 87 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSC------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCC
T ss_pred CCCEEEEEEEeCCCceEeC------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCc
Confidence 44567777764 3588765 56789999999988865 47999887421 1111 1
Q ss_pred -CCCCC---CccccCCC-cceeEEcccCceEEEEeCc-CcCcCCCeEEEEee
Q 030811 81 -NSDHP---LHNWTTGA-GRDVVPLNVTRHYYFISGK-GFCYGGMKLAVRVE 126 (171)
Q Consensus 81 -~~~~p---~~~~~~G~-g~~~v~L~~~g~~YFic~~-gHC~~GmKl~I~V~ 126 (171)
+..+. ......|. ++.+|+++++|.|||+|+. +||+.|||..|+|.
T Consensus 88 ~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 88 PDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp TTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred cccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 00010 01122332 1246788899999999999 99999999999996
No 8
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=99.02 E-value=7e-10 Score=83.33 Aligned_cols=84 Identities=20% Similarity=0.149 Sum_probs=59.8
Q ss_pred cCCCCCCCCCCccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEe
Q 030811 32 GANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFIS 110 (171)
Q Consensus 32 Gg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic 110 (171)
|++.+..+.+ +..++++||+|.|.++...|+|...+ .|...+.. .+..+.| ..+++++++|.|.|+|
T Consensus 11 g~~g~~~F~P------~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~-~~~~~pG~t~~~tF~~~G~y~y~C 78 (123)
T 1pmy_A 11 GPGGMMVFDP------ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGAD-YVKTTVGQEAVVKFDKEGVYGFKC 78 (123)
T ss_dssp ETTEEEEEES------SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCC-CCBCCTTSCEEEECCSCEEEEEEC
T ss_pred cCCCCceEeC------CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCcc-ceecCCCCEEEEEeCCCeEEEEEe
Confidence 5443455554 45689999999999987789997642 23222211 1222223 3578999999999999
Q ss_pred CcCcCcCCCeEEEEeeCC
Q 030811 111 GKGFCYGGMKLAVRVENP 128 (171)
Q Consensus 111 ~~gHC~~GmKl~I~V~~~ 128 (171)
. .||..||+..|+|..+
T Consensus 79 ~-~H~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 79 A-PHYMMGMVALVVVGDK 95 (123)
T ss_dssp S-TTTTTTCEEEEEESSC
T ss_pred C-CccccCCEEEEEEcCC
Confidence 9 6999999999999854
No 9
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.02 E-value=4.6e-10 Score=87.15 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=57.5
Q ss_pred CCceeeCCEEEEEeecC----CceEEEEc-cccCCCcCCCCCCcc-------ccCCC-cce--eEEcccCceEEEEeCc-
Q 030811 49 DKHFYNGDWLFFVYDRN----QMNVLEVN-KTDYESCNSDHPLHN-------WTTGA-GRD--VVPLNVTRHYYFISGK- 112 (171)
Q Consensus 49 ~~~F~vGD~LvF~y~~~----~hsV~~V~-~~~Y~~C~~~~p~~~-------~~~G~-g~~--~v~L~~~g~~YFic~~- 112 (171)
.-++++||+|+|++.+. .|++..++ ...|+.|.....+.. ...|. +.. +|++ ++|+|||+|..
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 35788999999999753 69999984 567888876543321 12331 123 4678 99999999999
Q ss_pred CcCcCCCeEEEEee
Q 030811 113 GFCYGGMKLAVRVE 126 (171)
Q Consensus 113 gHC~~GmKl~I~V~ 126 (171)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999884
No 10
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.99 E-value=1e-09 Score=82.40 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=59.7
Q ss_pred cCCCCCCCCCCccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEe
Q 030811 32 GANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFIS 110 (171)
Q Consensus 32 Gg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic 110 (171)
|++.+..+.+ +..++++||++.|.++...|+|... +.|...+.. .+..+.| ..+++++++|.|.|+|
T Consensus 11 g~~g~~~F~P------~~i~V~~GdtV~f~~~~~~H~v~~~-----~~~~p~~~~-~~~~~pG~t~~~tF~~~G~y~y~C 78 (123)
T 1paz_A 11 GAEGAMVFEP------AYIKANPGDTVTFIPVDKGHNVESI-----KDMIPEGAE-KFKSKINENYVLTVTQPGAYLVKC 78 (123)
T ss_dssp ETTEEEEEES------SEEEECTTCEEEEEESSSSCCCEEC-----TTCSCTTCC-CCBCCTTCCEEEECCSCEEEEEEC
T ss_pred cCCCCceEeC------CEEEECCCCEEEEEECCCCeEEEEe-----cccCCCCcc-ceecCCCCEEEEEeCCCEEEEEEe
Confidence 5543455544 4578999999999998778999763 223222211 1222333 3578999999999999
Q ss_pred CcCcCcCCCeEEEEeeCC
Q 030811 111 GKGFCYGGMKLAVRVENP 128 (171)
Q Consensus 111 ~~gHC~~GmKl~I~V~~~ 128 (171)
. .||..||+..|+|..+
T Consensus 79 ~-~H~~~gM~G~I~V~~~ 95 (123)
T 1paz_A 79 T-PHYAMGMIALIAVGDS 95 (123)
T ss_dssp T-TTGGGTCEEEEEESSS
T ss_pred C-CcccCCCEEEEEEcCC
Confidence 9 7999999999999853
No 11
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.89 E-value=7e-09 Score=73.42 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=61.1
Q ss_pred EEEecCC-CCCCCCCCccccccCCceeeCCEEEEEeecC-CceEEEEccc---cCCCcCCC--CCCccccCCCcceeEEc
Q 030811 28 RWIVGAN-QGWTNNVNYTIWAKDKHFYNGDWLFFVYDRN-QMNVLEVNKT---DYESCNSD--HPLHNWTTGAGRDVVPL 100 (171)
Q Consensus 28 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~hsV~~V~~~---~Y~~C~~~--~p~~~~~~G~g~~~v~L 100 (171)
++.+|++ .+..+.+ +..++++||+|.|++..+ .|++...+.. +.+.+... ........|. ..++++
T Consensus 2 ~v~m~~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~-~~~~tf 74 (99)
T 1plc_A 2 DVLLGADDGSLAFVP------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGE-TFEVAL 74 (99)
T ss_dssp EEEESCTTCCSCEES------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTC-EEEEEC
T ss_pred EEEEecCCCcceEeC------CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCC-EEEEEE
Confidence 4567654 3466554 457899999999988764 7999775421 12222100 0001223442 457889
Q ss_pred ccCceEEEEeCcCcCcCCCeEEEEee
Q 030811 101 NVTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 101 ~~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
+++|+|.|+|. .||+.||+..|+|.
T Consensus 75 ~~~G~y~~~C~-~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 75 SNKGEYSFYCS-PHQGAGMVGKVTVN 99 (99)
T ss_dssp CSCEEEEEECG-GGTTTTCEEEEEEC
T ss_pred CCCceEEEEcC-CCcccCCEEEEEEC
Confidence 99999999999 99999999999984
No 12
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.88 E-value=2.8e-09 Score=75.71 Aligned_cols=92 Identities=14% Similarity=0.079 Sum_probs=61.4
Q ss_pred eEEEecCC-CCCCCCCCccccccCCceeeCCEEEEEeec-CCceEEEEcc---ccCCCcCCCCCCccccCCCcceeEEcc
Q 030811 27 TRWIVGAN-QGWTNNVNYTIWAKDKHFYNGDWLFFVYDR-NQMNVLEVNK---TDYESCNSDHPLHNWTTGAGRDVVPLN 101 (171)
Q Consensus 27 ~~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~---~~Y~~C~~~~p~~~~~~G~g~~~v~L~ 101 (171)
.++.+|++ .++.+.+ +..++++||++.|.++. ..|+|...+. ++++.+..+........|. ..+++++
T Consensus 2 ~~V~m~~~~~~~~F~P------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~-~~~~tf~ 74 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVP------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGE-TVVRKLS 74 (98)
T ss_dssp EEEEESCTTSCCSEES------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTC-EEEEECC
T ss_pred EEEEEecCCCCcEEeC------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCC-EEEEEcC
Confidence 35566653 4577655 45789999999999876 4899976531 1222221110001233442 3578899
Q ss_pred cCceEEEEeCcCcCcCCCeEEEEee
Q 030811 102 VTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 102 ~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
++|.|+|+|.. ||+.||+..|.|.
T Consensus 75 ~~G~y~y~C~~-H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 75 TPGVYGVYCEP-HAGAGMKMTITVQ 98 (98)
T ss_dssp SCEEEEEECTT-TGGGTCEEEEEEC
T ss_pred CCEEEEEEchh-hccCCCEEEEEEC
Confidence 99999999995 9999999999884
No 13
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.86 E-value=3.3e-09 Score=75.70 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=60.5
Q ss_pred EEEecCC-CCCCCCCCccccccCCceeeCCEEEEEeec-CCceEEEEccccCC-----CcCCCCCCccccCCCcceeEEc
Q 030811 28 RWIVGAN-QGWTNNVNYTIWAKDKHFYNGDWLFFVYDR-NQMNVLEVNKTDYE-----SCNSDHPLHNWTTGAGRDVVPL 100 (171)
Q Consensus 28 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~-----~C~~~~p~~~~~~G~g~~~v~L 100 (171)
++.+|.+ .++.+.+ +..++++||++.|.+.. ..|++...+....+ .............|. ..++++
T Consensus 5 ~V~~~~~~~~~~F~P------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~~~~pG~-~~~~~f 77 (106)
T 2gim_A 5 TVKLGSDKGLLVFEP------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQ-STSTTF 77 (106)
T ss_dssp EEEESCTTCCSSEES------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTC-EEEEEC
T ss_pred EEEEEecCCcceEcC------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccceeeCCCC-EEEEEE
Confidence 5667654 5677765 45689999999999765 47999764321110 000000011233442 456788
Q ss_pred ---ccCceEEEEeCcCcCcCCCeEEEEee
Q 030811 101 ---NVTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 101 ---~~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
+++|.|+|+|. .||+.||+..|+|.
T Consensus 78 ~~~~~~G~y~y~C~-~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 78 PADAPAGEYTFYCE-PHRGAGMVGKITVA 105 (106)
T ss_dssp CTTCCSEEEEEECT-TTGGGTCEEEEEEC
T ss_pred ecCCCCceEEEEeC-ChhhcCcEEEEEEc
Confidence 89999999999 99999999999986
No 14
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.85 E-value=3.6e-09 Score=79.61 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=55.6
Q ss_pred cCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCcCcCcCCCeEEEEee
Q 030811 48 KDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
+.-++++||++.|.+++..|+|...+. +...+. ..+..++| ..+++++++|.|+|+|. .||..||+-.|.|.
T Consensus 21 ~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~-~~f~~~pg~t~s~TF~~pG~y~y~C~-~H~~~GM~G~I~V~ 93 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGV-ESFKSKINESYTLTVTEPGLYGVKCT-PHFGMGMVGLVQVG 93 (123)
T ss_dssp SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTC-CCCBCCTTCCEEEEECSCEEEEEECG-GGTTTTCEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCc-cceecCCCCEEEEEeCCCeEEEEEeC-CCCcCCcEEEEEEC
Confidence 567899999999999887899976421 222221 11222222 35788999999999999 89999999999998
Q ss_pred CCC
Q 030811 127 NPP 129 (171)
Q Consensus 127 ~~~ 129 (171)
.++
T Consensus 94 ~~~ 96 (123)
T 3erx_A 94 DAP 96 (123)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 15
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.85 E-value=6.2e-09 Score=78.77 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=61.4
Q ss_pred ecCCC-CCCCCCCccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEE
Q 030811 31 VGANQ-GWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYF 108 (171)
Q Consensus 31 VGg~~-GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YF 108 (171)
+|.+. +..+.+ +.-++++||++.|.+++..|+|...+. +...... .+..+.| ..+++++++|.|+|
T Consensus 11 ~g~~g~~~~F~P------~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~-~f~s~pGet~s~TF~~pG~y~y 78 (127)
T 3tu6_A 11 KAADGRVMAFEP------AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAE-TWKGKINEEITVTLSKPGVYMY 78 (127)
T ss_dssp ECTTSCEEEEES------SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCC-CCBCCTTCCCEEECCSCEEEEE
T ss_pred cCCCCcccEEeC------CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCcc-ceecCCCCEEEEEeCCCeEEEE
Confidence 46544 366654 567899999999999877899976432 2221111 1222222 35789999999999
Q ss_pred EeCcCcCcCCCeEEEEeeCCC
Q 030811 109 ISGKGFCYGGMKLAVRVENPP 129 (171)
Q Consensus 109 ic~~gHC~~GmKl~I~V~~~~ 129 (171)
+|. .||..||+-.|.|..++
T Consensus 79 ~C~-~H~~~GM~G~I~V~~~~ 98 (127)
T 3tu6_A 79 QCA-PHVGMGMIGAIVVGEPA 98 (127)
T ss_dssp ECT-TTGGGTCEEEEEESSCT
T ss_pred EeC-CCCcCCcEEEEEECcCC
Confidence 999 89999999999998754
No 16
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.81 E-value=3.4e-08 Score=74.35 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=64.1
Q ss_pred cceeEEEecC-CCCCCCCCCccccccCCceeeCCEEEEEeecC----CceEEEEccc------------------cCCCc
Q 030811 24 VDATRWIVGA-NQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRN----QMNVLEVNKT------------------DYESC 80 (171)
Q Consensus 24 a~A~~~~VGg-~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~----~hsV~~V~~~------------------~Y~~C 80 (171)
+...++.||. ..++.+.+ +..+++.||++.|.+.+. .|++...+.. +|..|
T Consensus 16 ~~~~~V~v~~~~~~~~F~p------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~ 89 (139)
T 2aan_A 16 SGPVTIEIGSKGEELAFDK------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPA 89 (139)
T ss_dssp -CCEEEEEEBCTTSSSBSC------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCS
T ss_pred CcCEEEEEEecCCccEEcC------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCc
Confidence 3445677753 23566654 456899999999887643 6999887532 56666
Q ss_pred CCCCCC---ccccCCCccee--EEcccCceEEEEeCc-CcCcCCCeEEEEee
Q 030811 81 NSDHPL---HNWTTGAGRDV--VPLNVTRHYYFISGK-GFCYGGMKLAVRVE 126 (171)
Q Consensus 81 ~~~~p~---~~~~~G~g~~~--v~L~~~g~~YFic~~-gHC~~GmKl~I~V~ 126 (171)
...+.+ ..+..|. ..+ |+.+++|+|+|+|.. +||+ ||+-.|.|.
T Consensus 90 ~~~~~~~~t~~l~pGe-t~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 90 DKSNIIAESPLANGNE-TVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp CCTTEEEECCCBCTTC-EEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccccccccccccCCCC-EEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 543321 1233442 234 445589999999999 9999 999999884
No 17
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.81 E-value=1.3e-08 Score=72.29 Aligned_cols=91 Identities=12% Similarity=0.012 Sum_probs=61.0
Q ss_pred EEEecCC-CCCCCCCCccccccCCceeeCCEEEEEeec-CCceEEEEccccCC----CcCCCCCC----ccccCCCccee
Q 030811 28 RWIVGAN-QGWTNNVNYTIWAKDKHFYNGDWLFFVYDR-NQMNVLEVNKTDYE----SCNSDHPL----HNWTTGAGRDV 97 (171)
Q Consensus 28 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~----~C~~~~p~----~~~~~G~g~~~ 97 (171)
++.+|++ .+..+.+ +..++++||++.|.+.. ..|++...+....+ .|+....+ .....|. ..+
T Consensus 2 ~V~~g~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~-~~~ 74 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYP------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEP-SFK 74 (102)
T ss_dssp EEEESCTTCCCCEES------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBC-EEE
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCC-EEE
Confidence 4567764 3466654 45689999999999765 47999865433321 11110011 1123342 457
Q ss_pred EEcccCceEEEEeCcCcCcCCCeEEEEee
Q 030811 98 VPLNVTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 98 v~L~~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
++++++|+|.|+|. .||+.||+..|.|.
T Consensus 75 ~tf~~~G~y~y~C~-~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 75 AKVSTPGTYTFYCT-PHKSANMKGTLTVK 102 (102)
T ss_dssp ECCCSCEEEEEECS-TTGGGTCEEEEEEC
T ss_pred EEeCCCeEEEEEeC-CCcccCCeEEEEEC
Confidence 88899999999999 99999999999884
No 18
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.80 E-value=1.3e-08 Score=76.85 Aligned_cols=85 Identities=15% Similarity=0.022 Sum_probs=61.4
Q ss_pred ecCCC-CCCCCCCccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCc-cccCCCcceeEEcccCceEEE
Q 030811 31 VGANQ-GWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLH-NWTTGAGRDVVPLNVTRHYYF 108 (171)
Q Consensus 31 VGg~~-GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~-~~~~G~g~~~v~L~~~g~~YF 108 (171)
+|++. ++.+.+ +..++++||++.|.++...|+|...+ .+...+... ....|. ..+++++++|.|.|
T Consensus 10 ~g~~G~~~~F~P------~~i~V~~GDTV~f~n~~~~Hnv~~~~-----~~~p~g~~~~~~~pg~-t~s~TF~~~G~y~Y 77 (124)
T 3ef4_A 10 KDDAGNTMVFQP------GFVKVEAGDTVKFVPTDKSHNAESVR-----EVWPEGVAPVKGGFSK-EVVFNAEKEGLYVL 77 (124)
T ss_dssp ECTTSCEEEEES------SEEEECTTCEEEEECSSSSCCCEECT-----TTSCTTSCCCBCCTTC-CEEEECCSSEEEEE
T ss_pred cCCCCceeEEeC------CEEEECCCCEEEEEECCCCccEEEeC-----CcCCCCccccccCCCC-EEEEEeCCCeEEEE
Confidence 44443 377766 56789999999999988899997642 122222111 112332 46789999999999
Q ss_pred EeCcCcCcCCCeEEEEeeCC
Q 030811 109 ISGKGFCYGGMKLAVRVENP 128 (171)
Q Consensus 109 ic~~gHC~~GmKl~I~V~~~ 128 (171)
+|. .||..||+-.|+|..+
T Consensus 78 ~C~-~H~~~GM~G~I~V~~p 96 (124)
T 3ef4_A 78 KCA-PHYGMGMVVLVQVGKP 96 (124)
T ss_dssp ECT-TTGGGTCEEEEEESSC
T ss_pred EcC-CCCcCCCEEEEEECCC
Confidence 998 8999999999999873
No 19
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.80 E-value=6.3e-09 Score=73.28 Aligned_cols=92 Identities=15% Similarity=0.088 Sum_probs=61.0
Q ss_pred eEEEecCC-CCCCCCCCccccccCCceeeCCEEEEEeecC-CceEEEEcc---ccCCCcCCCCCCccccCCCcceeEEcc
Q 030811 27 TRWIVGAN-QGWTNNVNYTIWAKDKHFYNGDWLFFVYDRN-QMNVLEVNK---TDYESCNSDHPLHNWTTGAGRDVVPLN 101 (171)
Q Consensus 27 ~~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~hsV~~V~~---~~Y~~C~~~~p~~~~~~G~g~~~v~L~ 101 (171)
.++.+|++ .++.+.+ +..++++||++.|.+..+ .|++...+. .+++.+...........|. ..+++++
T Consensus 2 ~~V~m~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~-~~~~tf~ 74 (98)
T 2plt_A 2 ATVKLGADSGALEFVP------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGE-TYSVKLT 74 (98)
T ss_dssp EEEEESCTTCCSSEES------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTC-EEEEECC
T ss_pred EEEEEecCCCCceEeC------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCC-EEEEEeC
Confidence 45667654 3566654 446899999999988763 799976532 1122111000011233442 3578889
Q ss_pred cCceEEEEeCcCcCcCCCeEEEEee
Q 030811 102 VTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 102 ~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
++|+|.|.|. .||+.||+..|.|.
T Consensus 75 ~~G~y~y~C~-~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 75 AAGEYGYYCE-PHQGAGMVGKIIVQ 98 (98)
T ss_dssp SCEEEEEECG-GGGGGTCEEEEEEC
T ss_pred CCeEEEEEcC-CccccCCeEEEEEC
Confidence 9999999999 89999999999884
No 20
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.77 E-value=1.3e-08 Score=71.80 Aligned_cols=91 Identities=19% Similarity=0.152 Sum_probs=60.6
Q ss_pred EEEecCC-CCCCCCCCccccccCCceeeCCEEEEEeecC-CceEEEEcc---ccCCCcCCC--CCCccccCCCcceeEEc
Q 030811 28 RWIVGAN-QGWTNNVNYTIWAKDKHFYNGDWLFFVYDRN-QMNVLEVNK---TDYESCNSD--HPLHNWTTGAGRDVVPL 100 (171)
Q Consensus 28 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~hsV~~V~~---~~Y~~C~~~--~p~~~~~~G~g~~~v~L 100 (171)
++.+|++ .+..+.+ +..++++||++.|++... .|++...+. .+++.+... ........|. ..++++
T Consensus 2 ~V~~~~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~-~~~~~f 74 (99)
T 1byp_A 2 EVLLGSSDGGLAFVP------SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGE-EYSVTL 74 (99)
T ss_dssp EEEESCTTSCCSEES------SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTC-EEEEEE
T ss_pred EEEEecCCCcceEeC------CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCC-EEEEEe
Confidence 4567653 4566654 446899999999988763 799876542 122222110 0001223442 357888
Q ss_pred ccCceEEEEeCcCcCcCCCeEEEEee
Q 030811 101 NVTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 101 ~~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
+++|+|.|+|. .||+.||+..|.|.
T Consensus 75 ~~~G~y~~~C~-~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 75 TEKGTYKFYCA-PHAGAGMVGKVTVN 99 (99)
T ss_dssp CSCEEEEEECG-GGTTTTCEEEEEEC
T ss_pred CCCcEEEEEcC-CccccCCEEEEEEC
Confidence 99999999999 99999999999884
No 21
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.76 E-value=2.5e-08 Score=70.12 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=59.9
Q ss_pred EEEecCC-CCCCCCCCccccccCCceeeCCEEEEEeec-CCceEEEEcccc---CCCcCCCCCCccccCCCcceeEEccc
Q 030811 28 RWIVGAN-QGWTNNVNYTIWAKDKHFYNGDWLFFVYDR-NQMNVLEVNKTD---YESCNSDHPLHNWTTGAGRDVVPLNV 102 (171)
Q Consensus 28 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~---Y~~C~~~~p~~~~~~G~g~~~v~L~~ 102 (171)
++.+|++ .+..+.+ +..++++||++.|.+.. ..|++...+... .+.+.... .....|. ..++++++
T Consensus 4 ~V~~~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~--~~~~~g~-~~~~tf~~ 74 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEP------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK--LAIAPGS-FYSVTLGT 74 (97)
T ss_dssp EEEEEETTTEEEEES------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC--CCCSCSC-CEEEECCS
T ss_pred EEEEeccCCccEEeC------CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc--eecCCCC-EEEEEeCC
Confidence 4566653 4455544 45689999999999875 479997764321 00111111 1223342 46788899
Q ss_pred CceEEEEeCcCcCcCCCeEEEEee
Q 030811 103 TRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 103 ~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
+|.|.|+|. +||+.||+..|.|.
T Consensus 75 ~G~y~y~C~-~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 75 PGTYSFYCT-PHRGAGMVGTITVE 97 (97)
T ss_dssp CSEEEEECS-STTTTTCEEEEEEC
T ss_pred CeEEEEEcc-ChhhcCCEEEEEEC
Confidence 999999999 99999999999884
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.60 E-value=1.9e-07 Score=65.61 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=59.3
Q ss_pred EEEecCC-CCCCCCCCccccccCCceeeCCEEEEEeec-CCceEEEEcccc--CCCcCCCCCCccccCCCcceeEEcccC
Q 030811 28 RWIVGAN-QGWTNNVNYTIWAKDKHFYNGDWLFFVYDR-NQMNVLEVNKTD--YESCNSDHPLHNWTTGAGRDVVPLNVT 103 (171)
Q Consensus 28 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~--Y~~C~~~~p~~~~~~G~g~~~v~L~~~ 103 (171)
++.+|.+ .+..+.+ +..++++||++.|.+.. ..|++...+... -+..+..........|. ..+++++++
T Consensus 4 ~V~~~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~-~~~~tf~~~ 76 (98)
T 1pcs_A 4 TVKMGSDSGALVFEP------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGE-SFTSTFTEP 76 (98)
T ss_dssp EEEESCTTSCSSEES------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTC-EEEEECCSC
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCC-EEEEEcCCC
Confidence 4567654 4566654 44689999999999765 479987643210 00000000011123342 356788999
Q ss_pred ceEEEEeCcCcCcCCCeEEEEee
Q 030811 104 RHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 104 g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
|+|.|.|. .||+.||+..|.|.
T Consensus 77 G~y~~~C~-~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 77 GTYTYYCE-PHRGAGMVGKVVVE 98 (98)
T ss_dssp EEEEEECG-GGTTTTCEEEEEEC
T ss_pred eEEEEEcC-CccccCCeEEEEEC
Confidence 99999999 89999999999884
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.30 E-value=1.4e-06 Score=65.55 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=47.7
Q ss_pred cCCceeeCCEEEEEeecC-CceEEEEccccCCCcCCCCCC--ccccCCCcceeEEcccCceEEEEeCcCcCcCCCeEEEE
Q 030811 48 KDKHFYNGDWLFFVYDRN-QMNVLEVNKTDYESCNSDHPL--HNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVR 124 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~-~hsV~~V~~~~Y~~C~~~~p~--~~~~~G~g~~~v~L~~~g~~YFic~~gHC~~GmKl~I~ 124 (171)
+..++++||++.|..+.. .|++...+... ..... .....| ...+++++++|+|.|.|.. |. ||+..|.
T Consensus 60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~-----g~~~~~s~~l~pG-~t~~~tF~~~G~y~y~C~~-H~--gM~G~I~ 130 (132)
T 3c75_A 60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIV-----GEDAFRGEMMTKD-QAYAITFNEAGSYDYFCTP-HP--FMRGKVI 130 (132)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTS-----SSSCEECCCBCTT-EEEEEEECSCEEEEEECSS-CT--TCEEEEE
T ss_pred CEEEECCCCEEEEEECCCCceEEEEeCCCC-----CcccccccccCCC-CEEEEEcCCCEEEEEEeCC-Cc--CCEEEEE
Confidence 456889999999997653 69987643221 00000 112333 2356788999999999996 76 9999998
Q ss_pred ee
Q 030811 125 VE 126 (171)
Q Consensus 125 V~ 126 (171)
|.
T Consensus 131 V~ 132 (132)
T 3c75_A 131 VE 132 (132)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 24
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.30 E-value=1.2e-06 Score=65.43 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=51.1
Q ss_pred cCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCcCcCcCCCeEEEEee
Q 030811 48 KDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
...++++||++.|......|+|...+ .+-..+.. .+..+.| ..+++++++|.|.|+|.. |+. |+..|.|.
T Consensus 21 ~~i~V~~GdtV~f~n~d~~H~v~~~~-----~~~p~~~~-~~~~~~g~t~~~tF~~~G~y~y~C~~-H~~--M~G~I~V~ 91 (122)
T 2ux6_A 21 ASLKVAPGDTVTFIPTDKGHNVETIK-----GMIPDGAE-AFKSKINENYKVTFTAPGVYGVKCTP-HPF--MVGVVQVG 91 (122)
T ss_dssp SEEEECTTEEEEEEESSSSCCCEECT-----TCSCTTCC-CCBCCTTCCEEEEECSCEEEEEEETT-EEE--EEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCcEEEEcc-----cccCCCcc-eeecCCCCEEEEEeCCCEEEEEEeCC-Ccc--CEEEEEEe
Confidence 45688999999999987789997653 12221111 1222222 357888999999999996 777 99999998
Q ss_pred CC
Q 030811 127 NP 128 (171)
Q Consensus 127 ~~ 128 (171)
.+
T Consensus 92 ~~ 93 (122)
T 2ux6_A 92 DA 93 (122)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 25
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.99 E-value=3.4e-05 Score=54.25 Aligned_cols=89 Identities=18% Similarity=0.177 Sum_probs=57.1
Q ss_pred EEEecCC-CCCCCCCCccccccCCceeeCCEEEEEeec-CCceEEEEccccCCCcCCC-------CCCccccCCCcceeE
Q 030811 28 RWIVGAN-QGWTNNVNYTIWAKDKHFYNGDWLFFVYDR-NQMNVLEVNKTDYESCNSD-------HPLHNWTTGAGRDVV 98 (171)
Q Consensus 28 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-~~hsV~~V~~~~Y~~C~~~-------~p~~~~~~G~g~~~v 98 (171)
++.+|.+ .+..+.+ ...+++.||++.|.... ..|++..-... ..+... ........|. +..+
T Consensus 4 ~V~~~~~~~~~~f~p------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~--~~~~~g~~~~~~~~~~~~i~pG~-~~~~ 74 (105)
T 3cvb_A 4 TVKMGADSGLFQFEP------ANVTVHPGDTVKWVNNKLPPHNILFDDKQ--VPGASKELADKLSHSQLMFSPGE-SYEI 74 (105)
T ss_dssp EEEESCTTCCSCEES------SEEEECTTEEEEEEECSSCCEEEEECTTS--SGGGCHHHHHHHCEEEEECSTTC-EEEE
T ss_pred EEEEeecCCccEEeC------CEEEEcCCCEEEEEECCCCCCeEEEeCCC--CCcccccccccccccccccCCCC-eEEE
Confidence 4567654 4566543 34588999999998664 47998764211 111000 0001223342 3456
Q ss_pred Ec---ccCceEEEEeCcCcCcCCCeEEEEee
Q 030811 99 PL---NVTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 99 ~L---~~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
++ +++|+|+|.|. .|+..||+-.|.|.
T Consensus 75 ~f~~~~~~G~y~y~C~-~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 75 TFSSDFPAGTYTYYCA-PHRGAGMVGKITVE 104 (105)
T ss_dssp EECTTSCSEEEEEECT-TTGGGTCEEEEEEC
T ss_pred EEecCCCCeeEEEEeC-CchhcCCEEEEEEc
Confidence 66 78999999999 89999999999985
No 26
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=97.96 E-value=7e-06 Score=58.21 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=46.6
Q ss_pred cCCceeeCCEEEEEeec---CCceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCcCcCcCCCeEEE
Q 030811 48 KDKHFYNGDWLFFVYDR---NQMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGKGFCYGGMKLAV 123 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~---~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~gHC~~GmKl~I 123 (171)
+..++++||++.|.+.+ ..|++..- .... ......|.. ...++.+++|.|.|.|. .||..||+-.|
T Consensus 28 ~~i~v~~G~tV~~~~~n~d~~~H~~~~~-~~~~--------~~~~~pg~~~~~~~t~~~~G~Y~y~C~-~H~~~gM~G~i 97 (100)
T 4hci_A 28 NVITIPINESTTLLLKNKGKSEHTFTIK-KLGI--------DVVVESGKEKNITVKPKSAGTYELICR-YHLLKGMEGKV 97 (100)
T ss_dssp SEEEECTTSCEEEEEEECSSSCEEEEEG-GGTE--------EEEECTTCEEEEEECCCSCEEEEEECT-TTGGGTCEEEE
T ss_pred CEEEECCCCEEEEEEEcCCCceEEEEEe-cCCc--------ceeecCCcceeEEEecccCceEEEECc-cccCCCCEEEE
Confidence 45789999999998754 24776442 1110 011233321 13456689999999998 79999999999
Q ss_pred Eee
Q 030811 124 RVE 126 (171)
Q Consensus 124 ~V~ 126 (171)
.|+
T Consensus 98 ~Ve 100 (100)
T 4hci_A 98 IVK 100 (100)
T ss_dssp EEC
T ss_pred EEC
Confidence 884
No 27
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.88 E-value=6.4e-05 Score=59.26 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=57.3
Q ss_pred eEEEecCCCCCCCCCCccccccCCce-eeCCEEEEEee--cC------CceEEEEcccc---------------CCCcCC
Q 030811 27 TRWIVGANQGWTNNVNYTIWAKDKHF-YNGDWLFFVYD--RN------QMNVLEVNKTD---------------YESCNS 82 (171)
Q Consensus 27 ~~~~VGg~~GW~~~~~Y~~Wa~~~~F-~vGD~LvF~y~--~~------~hsV~~V~~~~---------------Y~~C~~ 82 (171)
.++.|+.+.+..+.+ +..++ +.||++.|.+. .. .|+++..+..+ |..=+.
T Consensus 43 ~~V~I~~~d~m~F~P------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d 116 (167)
T 3ay2_A 43 CAATVESNDNMQFNT------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDD 116 (167)
T ss_dssp CEEEEEECTTSCBSC------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTC
T ss_pred eEEEEEeCCCceEec------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccc
Confidence 467777666777765 44566 67997655553 33 29988765432 211111
Q ss_pred CCCC---ccccCCCcceeEEcc----cCceEEEEeCc-CcCcCCCeEEEEee
Q 030811 83 DHPL---HNWTTGAGRDVVPLN----VTRHYYFISGK-GFCYGGMKLAVRVE 126 (171)
Q Consensus 83 ~~p~---~~~~~G~g~~~v~L~----~~g~~YFic~~-gHC~~GmKl~I~V~ 126 (171)
.+-+ .....|. +.+++++ ++|+|.|+|.. +|=+ |||-.|+|.
T Consensus 117 ~~vl~~t~~l~pGe-t~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 117 ARVVAHTKLIGGGE-ESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp TTEEEECCCBCTTC-EEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred cchhccceeeCCCC-EEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 1111 1223342 3455554 79999999998 9988 999999986
No 28
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.87 E-value=1.1e-05 Score=64.59 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=51.1
Q ss_pred eeeCCEEEEE---eec------CCceEEEEccccCCCcCCCC-C--CccccCCCcceeEEc--------------ccCce
Q 030811 52 FYNGDWLFFV---YDR------NQMNVLEVNKTDYESCNSDH-P--LHNWTTGAGRDVVPL--------------NVTRH 105 (171)
Q Consensus 52 F~vGD~LvF~---y~~------~~hsV~~V~~~~Y~~C~~~~-p--~~~~~~G~g~~~v~L--------------~~~g~ 105 (171)
.++||.|-+- |+. ..+.+++|++++|+.|+... + +..-+...+...+++ ....+
T Consensus 26 v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~ 105 (178)
T 1iko_P 26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 105 (178)
T ss_dssp CCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 4569999886 332 23789999999999999752 2 111122222123322 23448
Q ss_pred EEEEeCc------------CcCcC-CCeEEEEeeCCCCC
Q 030811 106 YYFISGK------------GFCYG-GMKLAVRVENPPPP 131 (171)
Q Consensus 106 ~YFic~~------------gHC~~-GmKl~I~V~~~~~~ 131 (171)
|||||.- |+|.. +|||.|.|...+..
T Consensus 106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~ 144 (178)
T 1iko_P 106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASS 144 (178)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC---
T ss_pred eEEEecCCcccccccccCCCccccceeEEEEEeecCCCC
Confidence 9999986 37975 99999999876653
No 29
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.80 E-value=0.00024 Score=53.48 Aligned_cols=91 Identities=10% Similarity=0.129 Sum_probs=56.6
Q ss_pred EEEecCCCCCCCCCCccccccCCceeeC-CEEEEEeec-C-------CceEEEEccc----------------cCCCcCC
Q 030811 28 RWIVGANQGWTNNVNYTIWAKDKHFYNG-DWLFFVYDR-N-------QMNVLEVNKT----------------DYESCNS 82 (171)
Q Consensus 28 ~~~VGg~~GW~~~~~Y~~Wa~~~~F~vG-D~LvF~y~~-~-------~hsV~~V~~~----------------~Y~~C~~ 82 (171)
++.|+.+....+.+ +.-+++.| |.+.|.+.+ + .|+++..+.. +|..=+.
T Consensus 4 ~v~i~~~d~m~F~p------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~ 77 (129)
T 1cuo_A 4 ETTVTSGDTMTYST------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGD 77 (129)
T ss_dssp EEEEEECSSSCCSC------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTC
T ss_pred EEEEEeCCCceEcc------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccccccc
Confidence 45566555667765 55688999 966666643 2 3998877543 2311111
Q ss_pred CCCC---ccccCCCcceeE--Ecc---cCceEEEEeCc-CcCcCCCeEEEEee
Q 030811 83 DHPL---HNWTTGAGRDVV--PLN---VTRHYYFISGK-GFCYGGMKLAVRVE 126 (171)
Q Consensus 83 ~~p~---~~~~~G~g~~~v--~L~---~~g~~YFic~~-gHC~~GmKl~I~V~ 126 (171)
.+-+ .....|. +.++ +.+ ++|+|+|+|.. +|=+ |||-.|+|.
T Consensus 78 ~~~~~~t~~l~pGe-t~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 78 KRVIAFTPIIGGGE-KTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp TTCSEECCCBCTTC-EEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred ccceeeeeEECCCC-EEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 1111 1233442 3344 444 89999999998 9988 899999986
No 30
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.77 E-value=5.6e-05 Score=54.31 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=47.5
Q ss_pred cCCceeeCCEEEEEeecC-CceEEEEccccCCCcCCCCCC--ccccCCCcceeEEcccCceEEEEeCcCcCcCCCeEEEE
Q 030811 48 KDKHFYNGDWLFFVYDRN-QMNVLEVNKTDYESCNSDHPL--HNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVR 124 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~-~hsV~~V~~~~Y~~C~~~~p~--~~~~~G~g~~~v~L~~~g~~YFic~~gHC~~GmKl~I~ 124 (171)
+..++++||++.|..... .|++...+... ..... ..+..| ....++++++|.|.|.|.. |. ||+..|.
T Consensus 34 ~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~-----~~~~~~s~~l~~g-~~~~~tf~~~G~y~~~C~~-H~--~M~G~I~ 104 (106)
T 1id2_A 34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIV-----GEDAFRGEMMTKD-QAYAITFNEAGSYDYFCTP-HP--FMRGKVI 104 (106)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTS-----SSSCEECCCBCTT-EEEEEEECSCEEEEEECSS-CT--TCEEEEE
T ss_pred CEEEECCCCEEEEEECCCCcEEEEEeCCCC-----CcccccccccCCC-CEEEEEeCCCEEEEEEeCC-CC--CCEEEEE
Confidence 456899999999997653 69986643210 00000 112333 2356788999999999996 76 9999998
Q ss_pred ee
Q 030811 125 VE 126 (171)
Q Consensus 125 V~ 126 (171)
|.
T Consensus 105 V~ 106 (106)
T 1id2_A 105 VE 106 (106)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 31
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.69 E-value=5.7e-05 Score=54.01 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=53.7
Q ss_pred eeEEEecCCCCCCCCCCccccccCCceeeCCEEEEEeecC-CceEEEEccccCCCcCCCCCC--ccccCCCcceeEEccc
Q 030811 26 ATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRN-QMNVLEVNKTDYESCNSDHPL--HNWTTGAGRDVVPLNV 102 (171)
Q Consensus 26 A~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~-~hsV~~V~~~~Y~~C~~~~p~--~~~~~G~g~~~v~L~~ 102 (171)
+.++.|-- .+|.+.+ ...++++||++.|..... .|+|...+.. +..... .....|. ...+++++
T Consensus 18 a~~~~V~~-~~~~F~P------~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~-----~g~~~~~~~~~~pG~-~~~~tf~~ 84 (105)
T 2ov0_A 18 DGAIVVDI-AKMKYET------PELHVKVGDTVTWINREAMPHNVHFVAGV-----LGEAALKGPMMKKEQ-AYSLTFTE 84 (105)
T ss_dssp TTCEEEEE-ETTEESS------SEEEECTTCEEEEEECSSSCBCCEECTTT-----SSSSCEECCCBCTTE-EEEEEECS
T ss_pred CcCEEEEE-eecEEcC------CEEEECCCCEEEEEECCCCCEEEEEcCCC-----CCcccccccccCCCC-EEEEEeCC
Confidence 44444432 2466554 456889999999987654 7998764321 000001 1123342 35678899
Q ss_pred CceEEEEeCcCcCcCCCeEEEEee
Q 030811 103 TRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 103 ~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
+|+|+|.|.. |- ||+-.|.|.
T Consensus 85 ~G~y~y~C~~-H~--gM~G~i~V~ 105 (105)
T 2ov0_A 85 AGTYDYHCTP-HP--FMRGKVVVE 105 (105)
T ss_dssp CEEEEEECSS-CT--TCEEEEEEC
T ss_pred CEEEEEEeCC-CC--CCEEEEEEC
Confidence 9999999996 54 999999884
No 32
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.40 E-value=0.0011 Score=49.72 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=53.2
Q ss_pred EEEecCCCCCCCCCCccccccCCce-eeCCEEEEEeec--C------CceEEEEccc----------------cCCCcCC
Q 030811 28 RWIVGANQGWTNNVNYTIWAKDKHF-YNGDWLFFVYDR--N------QMNVLEVNKT----------------DYESCNS 82 (171)
Q Consensus 28 ~~~VGg~~GW~~~~~Y~~Wa~~~~F-~vGD~LvF~y~~--~------~hsV~~V~~~----------------~Y~~C~~ 82 (171)
++.|+.+.+..+.+ +.-++ +.||++.|.+.+ . .|+++..+.+ +|..=+.
T Consensus 3 ~v~v~~~d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~ 76 (128)
T 2iaa_C 3 DVSIEGNDSMQFNT------KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGD 76 (128)
T ss_dssp EEEEEECTTSCBSC------SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTC
T ss_pred EEEEEeCCCceEec------CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhcccccccccccc
Confidence 34555555677755 23344 559966666643 2 3998776533 2321111
Q ss_pred CCC---CccccCCCcceeEEcc----cCc-eEEEEeCc-CcCcCCCeEEEEee
Q 030811 83 DHP---LHNWTTGAGRDVVPLN----VTR-HYYFISGK-GFCYGGMKLAVRVE 126 (171)
Q Consensus 83 ~~p---~~~~~~G~g~~~v~L~----~~g-~~YFic~~-gHC~~GmKl~I~V~ 126 (171)
.+- ......|. +.+++++ ++| +|.|+|.. +|=+ |||-.|+|.
T Consensus 77 ~~~~~~t~~l~pGe-s~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 77 ERVIAHTSVIGGGE-TDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp TTEEEECCCBCTTC-EEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred chhhccceeeCCCC-EEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 111 11233442 3445544 678 59999998 9998 999999985
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.37 E-value=0.0012 Score=49.66 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=52.5
Q ss_pred EEEecCCCCCCCCCCccccccCCce-eeCCEEEEEeec--C------CceEEEEccc----------------cCCCcCC
Q 030811 28 RWIVGANQGWTNNVNYTIWAKDKHF-YNGDWLFFVYDR--N------QMNVLEVNKT----------------DYESCNS 82 (171)
Q Consensus 28 ~~~VGg~~GW~~~~~Y~~Wa~~~~F-~vGD~LvF~y~~--~------~hsV~~V~~~----------------~Y~~C~~ 82 (171)
++.|+.+.+..+.+ +.-++ +.||++.|.+.+ . .|+++..+.. +|..=+.
T Consensus 4 ~v~v~~~d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (129)
T 2ccw_A 4 EATVESNDAMQYNV------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGD 77 (129)
T ss_dssp EEEEEECTTSCBSC------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTC
T ss_pred EEEEEeCCCccEec------ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccccccc
Confidence 45566555666654 23344 459966666543 3 3998876543 2321111
Q ss_pred CCCC---ccccCCCcceeEEc--c--cCc-eEEEEeCc-CcCcCCCeEEEEee
Q 030811 83 DHPL---HNWTTGAGRDVVPL--N--VTR-HYYFISGK-GFCYGGMKLAVRVE 126 (171)
Q Consensus 83 ~~p~---~~~~~G~g~~~v~L--~--~~g-~~YFic~~-gHC~~GmKl~I~V~ 126 (171)
.+-+ .....|. +.++++ + ++| +|.|+|.. +|=+ |||-.|+|.
T Consensus 78 ~~~~~~t~~l~pGe-t~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 78 TRVIAHTKVIGGGE-SDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp TTEEEECCCBCTTC-EEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred ccceeeeeEECCCC-EEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 1111 1233342 334444 3 455 59999998 9988 899999985
No 34
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.34 E-value=0.00086 Score=50.34 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=54.1
Q ss_pred EEEecCCCCCCCCCCccccccCCce-eeCCEEEEEeec--C------CceEEEEcccc----------------CCCcCC
Q 030811 28 RWIVGANQGWTNNVNYTIWAKDKHF-YNGDWLFFVYDR--N------QMNVLEVNKTD----------------YESCNS 82 (171)
Q Consensus 28 ~~~VGg~~GW~~~~~Y~~Wa~~~~F-~vGD~LvF~y~~--~------~hsV~~V~~~~----------------Y~~C~~ 82 (171)
++.|+.+.+..+.+ +.-++ +.||++.|.+.+ . .|+++..+..+ |..=+.
T Consensus 4 ~v~v~~~d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~ 77 (128)
T 1nwp_A 4 KVTVDSTDQMSFNT------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGD 77 (128)
T ss_dssp EEEEEECTTSCBSC------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTC
T ss_pred EEEEEeCCCccEec------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccccccccc
Confidence 45666655677765 44566 779976666643 2 29988764332 211111
Q ss_pred CCCC---ccccCCCcceeEEcc----cCce-EEEEeCc-CcCcCCCeEEEEee
Q 030811 83 DHPL---HNWTTGAGRDVVPLN----VTRH-YYFISGK-GFCYGGMKLAVRVE 126 (171)
Q Consensus 83 ~~p~---~~~~~G~g~~~v~L~----~~g~-~YFic~~-gHC~~GmKl~I~V~ 126 (171)
.+-+ .....|. +.+++++ ++|. |.|+|.. +|=+ |||-.|+|.
T Consensus 78 ~~~~~~t~~l~pGe-t~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 78 ARVIAHTKVIGAGE-KDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp TTEEEECCCBCTTC-EEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred chhheeeeeeCCCC-EEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 1111 1233442 3445543 4665 9999998 9999 999999883
No 35
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=97.09 E-value=0.00084 Score=53.76 Aligned_cols=101 Identities=21% Similarity=0.387 Sum_probs=54.3
Q ss_pred ccceeEEEecCCCCCCCC-CCccccccCCceeeCCEEEEE---eecC--------CceEEEEccccCCCcCCCC-CCccc
Q 030811 23 EVDATRWIVGANQGWTNN-VNYTIWAKDKHFYNGDWLFFV---YDRN--------QMNVLEVNKTDYESCNSDH-PLHNW 89 (171)
Q Consensus 23 ~a~A~~~~VGg~~GW~~~-~~Y~~Wa~~~~F~vGD~LvF~---y~~~--------~hsV~~V~~~~Y~~C~~~~-p~~~~ 89 (171)
.+++..+.|= |... .-+..=--...+++||.|-+- |+.+ ...+++|++++|++|+... +...+
T Consensus 26 ~~sa~rh~Vy----WNSsNp~F~~~~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~ 101 (182)
T 3czu_B 26 MDAADRHTVF----WNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRW 101 (182)
T ss_dssp ---CCEEEEE----CSTTCGGGTTSCCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEE
T ss_pred hhhccccceE----EcCCCccccCCCceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEE
Confidence 3455566553 8752 212110122357899999775 3321 2567899999999998653 11111
Q ss_pred ------c-CCCccee------------EEcccCceEEEEeCc-----CcCcCCCeEEEEeeCCCC
Q 030811 90 ------T-TGAGRDV------------VPLNVTRHYYFISGK-----GFCYGGMKLAVRVENPPP 130 (171)
Q Consensus 90 ------~-~G~g~~~------------v~L~~~g~~YFic~~-----gHC~~GmKl~I~V~~~~~ 130 (171)
. .|+-+.+ +.......||||+.- |.| ||+.|.|.....
T Consensus 102 ~C~~P~~~~~p~kftikFQ~FSP~p~GlEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~ 163 (182)
T 3czu_B 102 QCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKIT 163 (182)
T ss_dssp EECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEESSSCCCSC---CEEEEEECC---
T ss_pred EeCCCCCCCCCcEEEEEEEEcCCCCCCeeEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCCC
Confidence 1 1110111 233345589999986 334 999999975544
No 36
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=96.91 E-value=0.0012 Score=52.69 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=48.6
Q ss_pred CceeeCCEEEEE---eec-------CCceEEEEccccCCCcCCCCCCcc-c--cC-----CCccee------------EE
Q 030811 50 KHFYNGDWLFFV---YDR-------NQMNVLEVNKTDYESCNSDHPLHN-W--TT-----GAGRDV------------VP 99 (171)
Q Consensus 50 ~~F~vGD~LvF~---y~~-------~~hsV~~V~~~~Y~~C~~~~p~~~-~--~~-----G~g~~~------------v~ 99 (171)
...++||.|-+- |+. ....+++|++++|++|+..+.... + +. |+-+.+ +.
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 457799999775 432 245678999999999997442211 1 10 110111 22
Q ss_pred cccCceEEEEeCc-CcCcCC--CeEEEEeeCCCC
Q 030811 100 LNVTRHYYFISGK-GFCYGG--MKLAVRVENPPP 130 (171)
Q Consensus 100 L~~~g~~YFic~~-gHC~~G--mKl~I~V~~~~~ 130 (171)
......||||++- ++=..| |||.|.|.....
T Consensus 132 F~pG~~YYyISTS~~~~~g~~ClrLkV~V~p~~~ 165 (177)
T 2x11_B 132 FRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNS 165 (177)
T ss_dssp CCTTEEEEEEEEESSCCCSSSCCEEEEEECCTTT
T ss_pred ccCCCeEEEEecCCCCCCCCcceEEEEEEEcCCC
Confidence 3334579999875 321111 999999986544
No 37
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.71 E-value=0.0027 Score=48.74 Aligned_cols=76 Identities=21% Similarity=0.314 Sum_probs=48.0
Q ss_pred eeeCCEEEEEeec---C------CceEEEEccccCCCcCCCC-CCccc--cCCCcceeE--------------EcccCce
Q 030811 52 FYNGDWLFFVYDR---N------QMNVLEVNKTDYESCNSDH-PLHNW--TTGAGRDVV--------------PLNVTRH 105 (171)
Q Consensus 52 F~vGD~LvF~y~~---~------~hsV~~V~~~~Y~~C~~~~-p~~~~--~~G~g~~~v--------------~L~~~g~ 105 (171)
.++||.|-+-=+. + ...++.|++++|++|+... +...+ +.-.+...+ ......+
T Consensus 25 v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~~ 104 (140)
T 2vsm_B 25 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD 104 (140)
T ss_dssp CCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 4579999876332 1 4678999999999999752 22111 111111222 2234457
Q ss_pred EEEEeCc-C-----------cCc-CCCeEEEEeeC
Q 030811 106 YYFISGK-G-----------FCY-GGMKLAVRVEN 127 (171)
Q Consensus 106 ~YFic~~-g-----------HC~-~GmKl~I~V~~ 127 (171)
||||+.- | -|. ..|||.|.|..
T Consensus 105 YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 105 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred eEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 9999986 3 587 48999999864
No 38
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.34 E-value=0.0096 Score=42.35 Aligned_cols=68 Identities=7% Similarity=-0.041 Sum_probs=43.6
Q ss_pred cCCceeeCCEEEEEeec-C--CceEEEEccccCCCcCCCCCCccccCCCccee--EEcccCceEEEEeCcCcCcC-CCeE
Q 030811 48 KDKHFYNGDWLFFVYDR-N--QMNVLEVNKTDYESCNSDHPLHNWTTGAGRDV--VPLNVTRHYYFISGKGFCYG-GMKL 121 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~-~--~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~--v~L~~~g~~YFic~~gHC~~-GmKl 121 (171)
..-+++.||.+.|.+.+ + .|++..-+ .+ .......|. ... |+.+++|.|+|.|.. ||.. +|+.
T Consensus 38 ~~i~v~~G~~V~~~~~n~d~~~H~~~i~~-~~--------~~~~i~pG~-~~~~~f~~~~~G~y~~~C~~-~~~~~~M~g 106 (112)
T 1iby_A 38 ETLVVKKGDAVKVVVENKSPISEGFSIDA-FG--------VQEVIKAGE-TKTISFTADKAGAFTIWCQL-HPKNIHLPG 106 (112)
T ss_dssp CEEEEETTCEEEEEEEECSSSCEEEEEGG-GT--------EEEEECTTC-EEEEEEECCSCEEEEEBCSS-SCTTTBCCE
T ss_pred CEEEEeCCCEEEEEEEECCCCeEEEEEcC-CC--------ceeEeCCCC-EEEEEEECCCCEEEEEECCC-CCchHHCEE
Confidence 34578999999998754 2 57765422 11 011123342 233 445899999999995 7743 4999
Q ss_pred EEEee
Q 030811 122 AVRVE 126 (171)
Q Consensus 122 ~I~V~ 126 (171)
.|.|.
T Consensus 107 ~i~V~ 111 (112)
T 1iby_A 107 TLNVV 111 (112)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99886
No 39
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.11 E-value=0.0045 Score=47.61 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=48.4
Q ss_pred ceeeCCEEEEE---eec---------CCceEEEEccccCCCcCCC-CCCccc--cCCCcce--------------eEEcc
Q 030811 51 HFYNGDWLFFV---YDR---------NQMNVLEVNKTDYESCNSD-HPLHNW--TTGAGRD--------------VVPLN 101 (171)
Q Consensus 51 ~F~vGD~LvF~---y~~---------~~hsV~~V~~~~Y~~C~~~-~p~~~~--~~G~g~~--------------~v~L~ 101 (171)
..++||.|-+- |+. ....+++|++++|++|+.. ++...+ +.-.+.. -+...
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF~ 102 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFR 102 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceeee
Confidence 56788999775 332 2346899999999999975 221111 1100101 12334
Q ss_pred cCceEEEEeCc-C-----------cCc-CCCeEEEEee
Q 030811 102 VTRHYYFISGK-G-----------FCY-GGMKLAVRVE 126 (171)
Q Consensus 102 ~~g~~YFic~~-g-----------HC~-~GmKl~I~V~ 126 (171)
....||||+.- | -|. ..|||.|.|.
T Consensus 103 pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 103 SHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp TTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred CCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 45589999986 4 487 4899999986
No 40
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.09 E-value=0.011 Score=45.20 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=47.0
Q ss_pred CceeeCCEEEEE---eec-------CCceEEEEccccCCCcCCCCCCc-cc--cC-----CCccee------------EE
Q 030811 50 KHFYNGDWLFFV---YDR-------NQMNVLEVNKTDYESCNSDHPLH-NW--TT-----GAGRDV------------VP 99 (171)
Q Consensus 50 ~~F~vGD~LvF~---y~~-------~~hsV~~V~~~~Y~~C~~~~p~~-~~--~~-----G~g~~~------------v~ 99 (171)
...++||.|-+- |+. ....+++|++++|++|+..+... .+ +. |+-+.+ +.
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 357789999775 332 24567899999999998644211 11 10 110111 22
Q ss_pred cccCceEEEEeCc-CcCcCC--CeEEEEeeCC
Q 030811 100 LNVTRHYYFISGK-GFCYGG--MKLAVRVENP 128 (171)
Q Consensus 100 L~~~g~~YFic~~-gHC~~G--mKl~I~V~~~ 128 (171)
......||||++- +|=..| |||.|.|.+.
T Consensus 103 F~pG~~YY~ISts~~~~~g~~ClrL~V~V~p~ 134 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSCLKLKVFVRPT 134 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCCCEEEEEECCT
T ss_pred ecCCCeEEEEEcCCCCCCCCceeEEEEEEEcc
Confidence 2344579999875 321112 9999999754
No 41
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=95.51 E-value=0.018 Score=44.98 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=45.7
Q ss_pred ceeeCCEEEEE---eec--------CCceEEEEccccCCCcCCCCCCc-cc--cC-----CCcce------------eEE
Q 030811 51 HFYNGDWLFFV---YDR--------NQMNVLEVNKTDYESCNSDHPLH-NW--TT-----GAGRD------------VVP 99 (171)
Q Consensus 51 ~F~vGD~LvF~---y~~--------~~hsV~~V~~~~Y~~C~~~~p~~-~~--~~-----G~g~~------------~v~ 99 (171)
.+++||.|-+- |+. ....+++|++++|++|+...... .+ +. |+-+. -+.
T Consensus 33 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~E 112 (157)
T 2wo3_B 33 EVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFE 112 (157)
T ss_dssp EECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSCC
T ss_pred EeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCee
Confidence 47789999775 332 12347899999999998754211 11 00 11011 123
Q ss_pred cccCceEEEEeCc-CcCcCC--CeEEEEeeCCC
Q 030811 100 LNVTRHYYFISGK-GFCYGG--MKLAVRVENPP 129 (171)
Q Consensus 100 L~~~g~~YFic~~-gHC~~G--mKl~I~V~~~~ 129 (171)
......||||+.- ++=..| |||.|.|....
T Consensus 113 F~pG~~YY~ISTS~g~~~gg~C~rlkV~V~~~~ 145 (157)
T 2wo3_B 113 FRPGHEYYYISATPPNAVDRPCLRLKVYVRPTQ 145 (157)
T ss_dssp CCTTCEEEEEEECTTCSCCTTCCEEEEEECCCC
T ss_pred eeCCCeEEEEEecCCCCCCCcceeEEEEEEcCC
Confidence 3345579999975 432222 68888776543
No 42
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=95.35 E-value=0.19 Score=37.59 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=49.2
Q ss_pred EEecCCCCCCCCCCccccccCCceee-CCEEEEEeec-C-------CceEEEEccc----------------cCCCcCCC
Q 030811 29 WIVGANQGWTNNVNYTIWAKDKHFYN-GDWLFFVYDR-N-------QMNVLEVNKT----------------DYESCNSD 83 (171)
Q Consensus 29 ~~VGg~~GW~~~~~Y~~Wa~~~~F~v-GD~LvF~y~~-~-------~hsV~~V~~~----------------~Y~~C~~~ 83 (171)
+.|-.+.+..+++ +.-+++. |+++.|.+.+ + .|+++..+.+ +|-.=+..
T Consensus 5 v~i~~~d~M~F~p------~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~ 78 (125)
T 3fsa_A 5 VDIQGNDQMQFNT------NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDS 78 (125)
T ss_dssp EEEEBCTTSCBSC------SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCT
T ss_pred EEEEccCCcEEec------CEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCc
Confidence 3444444566654 2334433 9998777764 3 3999887422 33221111
Q ss_pred CCC---ccccCCCcceeEEcc-----cCceEEEEeCcCcCcCCCeEEEEee
Q 030811 84 HPL---HNWTTGAGRDVVPLN-----VTRHYYFISGKGFCYGGMKLAVRVE 126 (171)
Q Consensus 84 ~p~---~~~~~G~g~~~v~L~-----~~g~~YFic~~gHC~~GmKl~I~V~ 126 (171)
+-+ ..+..|. +.+++++ ++|+|-|+|+ +|= |||-.|.|.
T Consensus 79 ~via~t~~l~pGe-s~~vtf~~~~l~~~G~y~f~C~-gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 79 RVIAHTKLIGSGE-KDSVTFDVSKLKEGEQYMFFCA-AHA--AMKGTLTLK 125 (125)
T ss_dssp TCCEECCCBCTTC-EEEEEEEGGGC---CCEEEECS-SST--TCEEEEEEC
T ss_pred cceeccceeCCCc-EEEEEEeCcCcCCCccEEEEcC-CCC--CcEEEEEEC
Confidence 111 1123332 3445544 6699999999 897 999999873
No 43
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=94.68 E-value=0.19 Score=37.66 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=45.4
Q ss_pred cCCceeeCCEEEEEeecC--CceEEEEccccCCCcCCCCCCccccCCC-cceeEEcccCceEEEEeCcCcCc---CCCeE
Q 030811 48 KDKHFYNGDWLFFVYDRN--QMNVLEVNKTDYESCNSDHPLHNWTTGA-GRDVVPLNVTRHYYFISGKGFCY---GGMKL 121 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~~~p~~~~~~G~-g~~~v~L~~~g~~YFic~~gHC~---~GmKl 121 (171)
+.-++.+||.+.|..++. .|+...- ..+.+ .....|. ....++.+++|.|+|.|.. +|. .+|+.
T Consensus 60 ~~l~Vp~G~~V~~~vts~DV~Hsf~ip-~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e-~CG~~H~~M~g 129 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSPDVIHGFHVE-GTNIN--------VEVLPGEVSTVRYTFKRPGEYRIICNQ-YCGLGHQNMFG 129 (135)
T ss_dssp SSEEEETTSEEEEEEEBSSSCEEEEET-TSSCE--------EEECBTBCEEEEEECCSCEEEEEECCS-CCSTTSTTCEE
T ss_pred CEEEEcCCCEEEEEEEeCCccceEEec-CCCce--------eEeCCCCcEEEEEEcCCCEEEEEECcc-cCCCCcCCCEE
Confidence 456899999999998653 4776431 11100 0112231 1246788999999999984 443 68999
Q ss_pred EEEee
Q 030811 122 AVRVE 126 (171)
Q Consensus 122 ~I~V~ 126 (171)
.|.|.
T Consensus 130 ~v~V~ 134 (135)
T 2cua_A 130 TIVVK 134 (135)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 44
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=93.46 E-value=0.27 Score=38.44 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=45.0
Q ss_pred cCCceeeCCEEEEEeecC--CceEEEEccccCCCcCCCCCCcc-ccCCC-cceeEEcccCceEEEEeCc--CcCcCCCeE
Q 030811 48 KDKHFYNGDWLFFVYDRN--QMNVLEVNKTDYESCNSDHPLHN-WTTGA-GRDVVPLNVTRHYYFISGK--GFCYGGMKL 121 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~~~p~~~-~~~G~-g~~~v~L~~~g~~YFic~~--gHC~~GmKl 121 (171)
+.-.+.+|+.+.|..++. .|+...- ++ .++. ...|. ....++.+++|.||+.|.. |+--.+|+.
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~IP---~l-------gik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g 162 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHVE---GT-------NINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFG 162 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEET---TS-------SCEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEEC---CC-------CeEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEE
Confidence 445788999999987652 4555441 11 1111 11221 1246788999999999995 555567999
Q ss_pred EEEee
Q 030811 122 AVRVE 126 (171)
Q Consensus 122 ~I~V~ 126 (171)
.|.|.
T Consensus 163 ~V~V~ 167 (168)
T 3s8f_B 163 TIVVK 167 (168)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 45
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=92.79 E-value=0.2 Score=43.38 Aligned_cols=76 Identities=11% Similarity=0.004 Sum_probs=49.9
Q ss_pred cCCceeeCCEEEEEeecC---CceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCc-CcCcCCCeEE
Q 030811 48 KDKHFYNGDWLFFVYDRN---QMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGK-GFCYGGMKLA 122 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~---~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~-gHC~~GmKl~ 122 (171)
..-+++.||++.|+..+. .|++..-....-..|. ...|.. ...|+++++|+|+|.|.. +|=..||+..
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~-------i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~ 127 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV-------NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGN 127 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB-------CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee-------cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEE
Confidence 446789999999888642 3776431211111121 223321 124666889999999999 8888899999
Q ss_pred EEeeCCCC
Q 030811 123 VRVENPPP 130 (171)
Q Consensus 123 I~V~~~~~ 130 (171)
|.|..+.+
T Consensus 128 i~V~~~~~ 135 (447)
T 2dv6_A 128 IQVLPGNR 135 (447)
T ss_dssp EEEESSCC
T ss_pred EEEeCCcc
Confidence 99987554
No 46
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.16 E-value=0.7 Score=43.05 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=45.9
Q ss_pred cCCceeeCCEEEEEeecC------CceEEEEccccCCCcCCCCCCc-cccCCC-cceeEEcccCceEEEEeCcCcCcC--
Q 030811 48 KDKHFYNGDWLFFVYDRN------QMNVLEVNKTDYESCNSDHPLH-NWTTGA-GRDVVPLNVTRHYYFISGKGFCYG-- 117 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~------~hsV~~V~~~~Y~~C~~~~p~~-~~~~G~-g~~~v~L~~~g~~YFic~~gHC~~-- 117 (171)
+.-++.+||++.|..++. .|+...-+ +. +. ....|. ....++.+++|.|||.|.. +|-.
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG-------IK~DaiPGrtnsvtFtadkPGvY~y~CSE-~CGa~H 626 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG-------VSMEISPQQTSSITFVADKPGLHWYYCSW-FCHALH 626 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT-------EEEEECTTCEEEEEEECCSCEEEEEECCS-CCSTTC
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeEecC---CC-------ceeeeCCCCeEEEEEEcCCCEEEEEECCC-cCCCCc
Confidence 456789999999987652 57765421 11 11 112232 1235778999999999995 5554
Q ss_pred -CCeEEEEeeC
Q 030811 118 -GMKLAVRVEN 127 (171)
Q Consensus 118 -GmKl~I~V~~ 127 (171)
+|+..|.|++
T Consensus 627 s~M~G~ViVEP 637 (638)
T 3sbq_A 627 MEMVGRMMVEP 637 (638)
T ss_dssp TTCEEEEEEEC
T ss_pred ccceEEEEEec
Confidence 5999999974
No 47
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=90.21 E-value=0.42 Score=44.19 Aligned_cols=69 Identities=10% Similarity=-0.065 Sum_probs=45.2
Q ss_pred CCceeeCCEEEEEeecC------CceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCc----CcCcC
Q 030811 49 DKHFYNGDWLFFVYDRN------QMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGK----GFCYG 117 (171)
Q Consensus 49 ~~~F~vGD~LvF~y~~~------~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~----gHC~~ 117 (171)
.-++++||++.|...+. .|++..-+ .+ .......|.. ...|+.+++|.|||.|.. .| .
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~g--------v~~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~ 582 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YG--------VAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--M 582 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETT-TT--------EEEEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--T
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEEecC-CC--------cceeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--c
Confidence 35788999999997652 47765421 11 0011233321 235788999999999993 55 4
Q ss_pred CCeEEEEeeCC
Q 030811 118 GMKLAVRVENP 128 (171)
Q Consensus 118 GmKl~I~V~~~ 128 (171)
||+..|.|.+.
T Consensus 583 gM~G~IiV~p~ 593 (595)
T 1fwx_A 583 EMRGRMLVEPK 593 (595)
T ss_dssp TCEEEEEEECC
T ss_pred CCEEEEEEEcC
Confidence 99999999853
No 48
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=87.39 E-value=0.49 Score=35.80 Aligned_cols=77 Identities=21% Similarity=0.402 Sum_probs=45.1
Q ss_pred CceeeCCEEEEE---eecC--------CceEEEEccccCCCcCCCC-CCccc------c-CCCccee------------E
Q 030811 50 KHFYNGDWLFFV---YDRN--------QMNVLEVNKTDYESCNSDH-PLHNW------T-TGAGRDV------------V 98 (171)
Q Consensus 50 ~~F~vGD~LvF~---y~~~--------~hsV~~V~~~~Y~~C~~~~-p~~~~------~-~G~g~~~------------v 98 (171)
...++||.|-+- |+.+ ...++.|++++|++|+..+ +...+ . .|+-+.+ +
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 346789999774 3221 2567899999999999654 21111 1 1211111 2
Q ss_pred EcccCceEEEEeCc-CcCcC-CCeEEEEee
Q 030811 99 PLNVTRHYYFISGK-GFCYG-GMKLAVRVE 126 (171)
Q Consensus 99 ~L~~~g~~YFic~~-gHC~~-GmKl~I~V~ 126 (171)
.......|||||.. .|=.. =+||.|.|.
T Consensus 102 EF~pG~~YY~ISt~~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 102 EFKEGHSYYYISKPIHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CCCTTCEEEEEEEESSCCCCSCCEEEEEEC
T ss_pred eecCCCcEEEEEccCCCCCCcceEEEEEEE
Confidence 33345589999997 33222 278888773
No 49
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=76.44 E-value=4.3 Score=33.68 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=29.3
Q ss_pred eEEcccCceEEEEeCc-CcC-cCCCeEEEEeeCCCC
Q 030811 97 VVPLNVTRHYYFISGK-GFC-YGGMKLAVRVENPPP 130 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-gHC-~~GmKl~I~V~~~~~ 130 (171)
.++.+++|.|+|.|.. .|+ +.||.-.+.|.....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~ 321 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWN 321 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCCC
Confidence 4677889999999999 899 899999999986554
No 50
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=74.47 E-value=6.1 Score=32.77 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=46.1
Q ss_pred CceeeCCEEEEEeecC-----CceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCc-C-----cCcC
Q 030811 50 KHFYNGDWLFFVYDRN-----QMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGK-G-----FCYG 117 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~-g-----HC~~ 117 (171)
-+++.||++.+++.+. -|.+..-...+.+. ..+......|.. ...|+++++|+|||-|-. + |=..
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~---~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~ 142 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALG---GGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS 142 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGG---GGGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCC---CCceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhC
Confidence 3578999999988753 35554321111110 011112334421 125677899999999987 4 5668
Q ss_pred CCeEEEEeeCC
Q 030811 118 GMKLAVRVENP 128 (171)
Q Consensus 118 GmKl~I~V~~~ 128 (171)
||.-.+.|...
T Consensus 143 Gl~G~~iV~~~ 153 (333)
T 1mzy_A 143 GMAGCIMVLPR 153 (333)
T ss_dssp TCEEEEEEECT
T ss_pred CCEEEEEEccC
Confidence 99999998853
No 51
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=74.22 E-value=6.2 Score=32.69 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=46.2
Q ss_pred CceeeCCEEEEEeecC-----CceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCc-C----cCcCC
Q 030811 50 KHFYNGDWLFFVYDRN-----QMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGK-G----FCYGG 118 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~-g----HC~~G 118 (171)
.+++.||++++++.+. .|++..=..... +..+++.....|.. ...++++++|+|||-|-. + |=..|
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~---~~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~G 143 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGATGA---LGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG 143 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSG---GGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCCCC---CCCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCC
Confidence 3577999999888653 465543211100 01112222344421 124677899999999997 4 44679
Q ss_pred CeEEEEeeCCC
Q 030811 119 MKLAVRVENPP 129 (171)
Q Consensus 119 mKl~I~V~~~~ 129 (171)
|.-.+.|....
T Consensus 144 l~G~liV~~~~ 154 (336)
T 1oe1_A 144 MSGTLMVLPRD 154 (336)
T ss_dssp CEEEEEEECTT
T ss_pred CeEEEEEecCc
Confidence 99999998543
No 52
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=72.04 E-value=6 Score=32.82 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=29.4
Q ss_pred eEEcccCceEEEEeCc-CcC-cCCCeEEEEeeCCCC
Q 030811 97 VVPLNVTRHYYFISGK-GFC-YGGMKLAVRVENPPP 130 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-gHC-~~GmKl~I~V~~~~~ 130 (171)
.++.+++|.|+|.|-. .|+ +.||.-.+.|...+.
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~~ 321 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWD 321 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESCCC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCCCC
Confidence 4667889999999999 999 999999999987554
No 53
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=70.09 E-value=5.2 Score=34.41 Aligned_cols=75 Identities=15% Similarity=-0.020 Sum_probs=44.7
Q ss_pred CceeeCCEEEEEeecC-----CceEEEEccccCCCcCCCCC-CccccCCCc-ceeEEcccCceEEEEeC---c-CcCcCC
Q 030811 50 KHFYNGDWLFFVYDRN-----QMNVLEVNKTDYESCNSDHP-LHNWTTGAG-RDVVPLNVTRHYYFISG---K-GFCYGG 118 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~~~p-~~~~~~G~g-~~~v~L~~~g~~YFic~---~-gHC~~G 118 (171)
.+++.||++++.+.+. .|++..=-....+. .+ ......|.. ...|+.+++|+|||-|- . .|=..|
T Consensus 62 i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG----~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 137 (442)
T 2zoo_A 62 IRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGG----GAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANG 137 (442)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG----GGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred EEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCC----CCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhCc
Confidence 3678899999988654 45553211000110 11 011334421 12467789999999994 4 566789
Q ss_pred CeEEEEeeCC
Q 030811 119 MKLAVRVENP 128 (171)
Q Consensus 119 mKl~I~V~~~ 128 (171)
|.-.+.|...
T Consensus 138 l~G~~iv~~~ 147 (442)
T 2zoo_A 138 MYGLILVEPK 147 (442)
T ss_dssp CEEEEEEECT
T ss_pred cEEEEEEeCC
Confidence 9999999854
No 54
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=68.93 E-value=11 Score=31.28 Aligned_cols=76 Identities=16% Similarity=0.002 Sum_probs=44.8
Q ss_pred CceeeCCEEEEEeecC-----CceEEEEccccCCCcCCCCCC-ccccCCCc-ceeEEcccCceEEEEeCc----CcCcCC
Q 030811 50 KHFYNGDWLFFVYDRN-----QMNVLEVNKTDYESCNSDHPL-HNWTTGAG-RDVVPLNVTRHYYFISGK----GFCYGG 118 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~~~p~-~~~~~G~g-~~~v~L~~~g~~YFic~~----gHC~~G 118 (171)
-+++.||++.+++.+. .|++..=-....| ..+. .....|.. ...++.+++|+|||-|.. .|=..|
T Consensus 72 i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~d----G~~~~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~G 147 (327)
T 1kbv_A 72 IRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQG----GGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANG 147 (327)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGG----GGTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred EEEeCCCEEEEEEEECCCCCCceeeEeCccccCC----CCCcceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcc
Confidence 4678999999987653 3555321000111 0111 11334421 124667899999999975 244679
Q ss_pred CeEEEEeeCCC
Q 030811 119 MKLAVRVENPP 129 (171)
Q Consensus 119 mKl~I~V~~~~ 129 (171)
|.-.|.|....
T Consensus 148 l~G~~iV~~~~ 158 (327)
T 1kbv_A 148 MYGLILVEPKE 158 (327)
T ss_dssp CEEEEEEECTT
T ss_pred eEEEEEEecCC
Confidence 99999998643
No 55
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=64.77 E-value=3.3 Score=28.85 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=12.4
Q ss_pred CceeeCCEEEEE-eecC
Q 030811 50 KHFYNGDWLFFV-YDRN 65 (171)
Q Consensus 50 ~~F~vGD~LvF~-y~~~ 65 (171)
+.|++||.|+|. |+++
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 559999999995 5443
No 56
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=59.29 E-value=34 Score=28.91 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=41.9
Q ss_pred CCceeeCCEEEEEeecC--CceEEEEccccCCCcCCCCCCccc-cCCC-cceeEEcccCceEEEEeCcCcCc---CCCeE
Q 030811 49 DKHFYNGDWLFFVYDRN--QMNVLEVNKTDYESCNSDHPLHNW-TTGA-GRDVVPLNVTRHYYFISGKGFCY---GGMKL 121 (171)
Q Consensus 49 ~~~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~~~p~~~~-~~G~-g~~~v~L~~~g~~YFic~~gHC~---~GmKl 121 (171)
.-.+.+|..+.|.-++. -|+...- ++ .++.. ..|- ....++.+++|.||..|.. .|. ..|++
T Consensus 152 ~l~lP~g~~V~~~lTS~DViHsf~IP---~l-------g~k~DaiPGr~n~~~~~~~~~G~y~g~CsE-~CG~~Hs~M~~ 220 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNSVMNSFFIP---RL-------GSQIYAMAGMQTRLHLIANEPGTYDGISAS-YSGPGFSGMKF 220 (315)
T ss_dssp BCCCCSSSEEEEEECBSSSCEEEEEG---GG-------TEEEEECBTSCEEEEEECCSCBCCEEBCCS-CCSTTTTTCCE
T ss_pred eEEEeCCCEEEEEEEeCCccceeeec---cc-------CcEEeecCCcceeeEEecCCCeEEEEeccc-cchhhHHhccc
Confidence 34678899999998752 3554431 11 01100 1121 1246788999999999994 554 45999
Q ss_pred EEEee
Q 030811 122 AVRVE 126 (171)
Q Consensus 122 ~I~V~ 126 (171)
.|.|.
T Consensus 221 ~v~vv 225 (315)
T 1fft_B 221 KAIAT 225 (315)
T ss_dssp ECCBC
T ss_pred eEEEe
Confidence 98887
No 57
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=56.18 E-value=8.6 Score=34.81 Aligned_cols=72 Identities=15% Similarity=0.351 Sum_probs=43.0
Q ss_pred ceeeCCEEEEEeecCCce--EEEE-ccccCCCcCCCCCC-ccccCCCcceeEEcccCceEEEEeCc-CcCcCCC-eEEEE
Q 030811 51 HFYNGDWLFFVYDRNQMN--VLEV-NKTDYESCNSDHPL-HNWTTGAGRDVVPLNVTRHYYFISGK-GFCYGGM-KLAVR 124 (171)
Q Consensus 51 ~F~vGD~LvF~y~~~~hs--V~~V-~~~~Y~~C~~~~p~-~~~~~G~g~~~v~L~~~g~~YFic~~-gHC~~Gm-Kl~I~ 124 (171)
-++-|-.+.|.=-...-+ ++.+ +-.....|...-.. ..+.-| ....| ++|.|||..+. .-|++|- |+.|.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (491)
T 3l6w_A 414 VVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFELG---KMYSV-ESGDYFMTASTTELCNDNNLRIHVH 489 (491)
T ss_pred EeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCccccc---ceEec-CCCceEecCChHHHHhCCceeEEEE
Confidence 466677777743222111 2222 33444568864321 222222 24445 69999999998 9999997 99998
Q ss_pred ee
Q 030811 125 VE 126 (171)
Q Consensus 125 V~ 126 (171)
|+
T Consensus 490 ~~ 491 (491)
T 3l6w_A 490 VD 491 (491)
T ss_pred eC
Confidence 84
No 58
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=54.74 E-value=34 Score=27.71 Aligned_cols=79 Identities=10% Similarity=-0.012 Sum_probs=45.7
Q ss_pred CceeeCCEEEEEeecC---CceEEEEccccCCCcCCCCCC---ccccCCCc-ceeEEcccCceEEEEeCc-C---cCcCC
Q 030811 50 KHFYNGDWLFFVYDRN---QMNVLEVNKTDYESCNSDHPL---HNWTTGAG-RDVVPLNVTRHYYFISGK-G---FCYGG 118 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~---~hsV~~V~~~~Y~~C~~~~p~---~~~~~G~g-~~~v~L~~~g~~YFic~~-g---HC~~G 118 (171)
-+++.||++..++.+. .|++..=--. ...-+. .|. .....|.. ...++.+.+|++||-|-. . |=..|
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~-~~~~DG-~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 145 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIHFHGVH-RATMDG-TPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSCC-CGGGSC-CTTSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred EEEeCCCEEEEEEEeCCCCcccEEecccc-ccccCC-CCCccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCc
Confidence 4678999999988653 3444221000 011111 110 11233421 125677899999999987 3 45689
Q ss_pred CeEEEEeeCCCC
Q 030811 119 MKLAVRVENPPP 130 (171)
Q Consensus 119 mKl~I~V~~~~~ 130 (171)
|--.|.|.....
T Consensus 146 l~G~liV~~~~~ 157 (288)
T 3gdc_A 146 LYGGFIVEPKEG 157 (288)
T ss_dssp CEEEEEEECSSC
T ss_pred CeEEEEEeCCcc
Confidence 999999986554
No 59
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=54.37 E-value=5.4 Score=27.83 Aligned_cols=19 Identities=42% Similarity=0.940 Sum_probs=16.5
Q ss_pred ccCCceeeCCEEEEEeecC
Q 030811 47 AKDKHFYNGDWLFFVYDRN 65 (171)
Q Consensus 47 a~~~~F~vGD~LvF~y~~~ 65 (171)
+..+..+.||.|+|+|...
T Consensus 73 v~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHHTCCTTCEEEEEECSS
T ss_pred HHHcCCCCCCEEEEEEcCC
Confidence 5678999999999999864
No 60
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=52.37 E-value=13 Score=30.50 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=24.8
Q ss_pred eeEEcccCceEEEEeCcCcCcC---CCeEEEEeeC
Q 030811 96 DVVPLNVTRHYYFISGKGFCYG---GMKLAVRVEN 127 (171)
Q Consensus 96 ~~v~L~~~g~~YFic~~gHC~~---GmKl~I~V~~ 127 (171)
..++.+++|.||..|+ ..|.. .|++.|.|.+
T Consensus 213 ~~~~~~~~G~y~g~Cs-e~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 213 LWFRAEREGIFFGQCS-ELCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEEECCSCEEEEECCC-SCCSTTGGGCCEEEEEEC
T ss_pred EEEecCCcEEEEEECh-HhcccCcccCeEEEEEEc
Confidence 4678899999999999 45554 4999998875
No 61
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=51.11 E-value=21 Score=29.43 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=45.9
Q ss_pred CceeeCCEEEEEeecC-----CceEEEEccccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCc-C----cCcCC
Q 030811 50 KHFYNGDWLFFVYDRN-----QMNVLEVNKTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGK-G----FCYGG 118 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~-----~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~-g----HC~~G 118 (171)
-+++.||++.+++.+. .|.+..-..... +...+......|.. ...++++++|+|||-|.. + |=..|
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~---~~~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~G 149 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGA---LGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG 149 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSG---GGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCC---CCCccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhCc
Confidence 3578999999988763 355533111100 00112212334421 125677889999999987 3 45689
Q ss_pred CeEEEEeeCCC
Q 030811 119 MKLAVRVENPP 129 (171)
Q Consensus 119 mKl~I~V~~~~ 129 (171)
|.-.+.|....
T Consensus 150 l~G~~iV~~~~ 160 (340)
T 2bw4_A 150 MNGAIMVLPRD 160 (340)
T ss_dssp CEEEEEEECTB
T ss_pred CEEEEEEccCc
Confidence 99999887543
No 62
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=51.00 E-value=13 Score=30.01 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=24.4
Q ss_pred eeEEcccCceEEEEeCcCcCcC---CCeEEEEeeC
Q 030811 96 DVVPLNVTRHYYFISGKGFCYG---GMKLAVRVEN 127 (171)
Q Consensus 96 ~~v~L~~~g~~YFic~~gHC~~---GmKl~I~V~~ 127 (171)
..++.+++|.||..|+. -|.. .|.+.|.|.+
T Consensus 182 ~~~~~~~~G~y~g~Cse-~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 182 TTLMSSRPGLYYGQCSE-ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EEECCSSCEEEEECCCS-CCSTTGGGCCEEEEEEC
T ss_pred EEEecCCcEEEEEEehh-hcccccccCeEEEEEEc
Confidence 35778999999999994 5654 4999888874
No 63
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=50.11 E-value=15 Score=30.99 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=26.5
Q ss_pred eeEEcccCceEEEEeCc--CcCcCCCeEEEEeeCCC
Q 030811 96 DVVPLNVTRHYYFISGK--GFCYGGMKLAVRVENPP 129 (171)
Q Consensus 96 ~~v~L~~~g~~YFic~~--gHC~~GmKl~I~V~~~~ 129 (171)
..++.+++|.||..|.. |.--..|++.|.|.++.
T Consensus 231 ~~~~~~~~G~y~g~CsE~CG~~Hs~M~~~v~vvs~~ 266 (298)
T 3hb3_B 231 LWFSVDQEGVYFGQCSELCGINHAYMPIVVKAVSQE 266 (298)
T ss_dssp EEEECSSSEEEEECCCSCCSTTTTSCCEEEEEECHH
T ss_pred EEEEeCCCEEEEEEcccccCcCccCCeeEEEEEcHH
Confidence 45788999999999995 44445699999988543
No 64
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=47.29 E-value=22 Score=28.44 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=39.8
Q ss_pred ceeeCCEEEEEeecC--CceEEEEccccCCCcCCCCCCccc-cCCC-cceeEEcccCceEEEEeCcCcCc---CCCeEEE
Q 030811 51 HFYNGDWLFFVYDRN--QMNVLEVNKTDYESCNSDHPLHNW-TTGA-GRDVVPLNVTRHYYFISGKGFCY---GGMKLAV 123 (171)
Q Consensus 51 ~F~vGD~LvF~y~~~--~hsV~~V~~~~Y~~C~~~~p~~~~-~~G~-g~~~v~L~~~g~~YFic~~gHC~---~GmKl~I 123 (171)
.+.+|+.+.|.-++. .|+...- .+ .++.. ..|- ....++.+++|.||..|.. .|. ..|++.|
T Consensus 44 ~lP~g~~V~~~lTS~DViHSF~IP---~l-------gvK~daiPGr~n~l~~~~~~pG~y~g~CsE-~CG~~Hs~M~~~v 112 (205)
T 1cyx_A 44 AFPANTPVYFKVTSNSVMHSFFIP---RL-------GSQIYAMAGMQTRLHLIANEPGTYDGICAE-ICGPGHSGMKFKA 112 (205)
T ss_dssp EEETTSCEEEEEEESSSCEEEEEG---GG-------TEEEEECTTCCEEEEECCSSSEEEEEEECS-CCSTTSTTCCEEE
T ss_pred EEeCCCEEEEEEecCCceeeEEec---cc-------CcEEEecCCceEEEEEEeCCCeEEEEEccc-ccccchhhceEEE
Confidence 567888888888752 3544331 11 01110 1121 1245778999999999994 454 4699999
Q ss_pred Eee
Q 030811 124 RVE 126 (171)
Q Consensus 124 ~V~ 126 (171)
.|.
T Consensus 113 ~vv 115 (205)
T 1cyx_A 113 IAT 115 (205)
T ss_dssp EEE
T ss_pred EEE
Confidence 888
No 65
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=46.05 E-value=8.9 Score=26.76 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=9.7
Q ss_pred cCCCeEEEEeeCCCCCCCCCC
Q 030811 116 YGGMKLAVRVENPPPPPSASP 136 (171)
Q Consensus 116 ~~GmKl~I~V~~~~~~p~~~p 136 (171)
+.|..+.+.+..+.++|.++|
T Consensus 63 ~~g~~i~lv~~~~~~~~~~~~ 83 (106)
T 3m62_B 63 KDGDQVVFMVSQKKSTKTKVT 83 (106)
T ss_dssp CTTCEEEEECCC---------
T ss_pred CCCCEEEEEEcCCCCCCCCCC
Confidence 468889888877666444344
No 66
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=46.04 E-value=8.7 Score=27.81 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=10.0
Q ss_pred CceeeCCEEEE
Q 030811 50 KHFYNGDWLFF 60 (171)
Q Consensus 50 ~~F~vGD~LvF 60 (171)
+.+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 57899999999
No 67
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=43.83 E-value=11 Score=28.23 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=19.5
Q ss_pred ccCCceeeCCEEEEEeecCCceEEEE
Q 030811 47 AKDKHFYNGDWLFFVYDRNQMNVLEV 72 (171)
Q Consensus 47 a~~~~F~vGD~LvF~y~~~~hsV~~V 72 (171)
+..+..++||.++|.+.....-+++|
T Consensus 112 v~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 112 TLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHcCCCCCCEEEEEEecCCceEEEE
Confidence 56789999999999998643224444
No 68
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=42.91 E-value=14 Score=30.04 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=26.9
Q ss_pred eEEcccCceEEEEeCc-CcCcCCCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGK-GFCYGGMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-gHC~~GmKl~I~V~~ 127 (171)
.++.+.+|.|.|.|-. .|=+.||.-.++|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 3556799999999999 999999999998863
No 69
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=42.48 E-value=19 Score=29.81 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=28.1
Q ss_pred eEEcccCceEEEEeCc-CcC-cCCCeEEEEeeCCCC
Q 030811 97 VVPLNVTRHYYFISGK-GFC-YGGMKLAVRVENPPP 130 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-gHC-~~GmKl~I~V~~~~~ 130 (171)
.|+.+++|.|+|.|.. .|| +.||.-.+.+...+.
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~~ 310 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAEN 310 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCCC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCCCC
Confidence 4566789999999999 898 789988888886554
No 70
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=39.34 E-value=24 Score=28.96 Aligned_cols=35 Identities=14% Similarity=0.002 Sum_probs=29.2
Q ss_pred ccCceEEEEeCc-CcCcCCCeEEEEeeCCCCCCCCC
Q 030811 101 NVTRHYYFISGK-GFCYGGMKLAVRVENPPPPPSAS 135 (171)
Q Consensus 101 ~~~g~~YFic~~-gHC~~GmKl~I~V~~~~~~p~~~ 135 (171)
+.||.+.|-|=. .|=+.||...+.|.....++|++
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~~~P~g 295 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADGTMPAG 295 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSCCCTT
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCCCCCCC
Confidence 468999999999 99999999999999776654443
No 71
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=38.20 E-value=0.48 Score=25.91 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=14.0
Q ss_pred CCceeeCCEEEEEeecCCc
Q 030811 49 DKHFYNGDWLFFVYDRNQM 67 (171)
Q Consensus 49 ~~~F~vGD~LvF~y~~~~h 67 (171)
++.|.|.|.|-|.|+...|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 5789999999999986433
No 72
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=37.92 E-value=8.8 Score=28.70 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=10.0
Q ss_pred eCCEEEEEeecCCceEEEE
Q 030811 54 NGDWLFFVYDRNQMNVLEV 72 (171)
Q Consensus 54 vGD~LvF~y~~~~hsV~~V 72 (171)
-|+.+.|.-+++.++-+..
T Consensus 77 ~gK~V~~~S~AgY~S~V~y 95 (126)
T 4dny_A 77 EGKMVRFVSSAGYSSTVFY 95 (126)
T ss_dssp TTCEEEEEEECSSCEEEEE
T ss_pred CCCEEEEEEecCccEEEEE
Confidence 4556666665554444433
No 73
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=37.81 E-value=47 Score=27.49 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEeecCC--------ceEEEEcc--ccCCCcCCCCCCccccCCCcceeEEcccCceEEEEeCc-C--cCc-
Q 030811 51 HFYNGDWLFFVYDRNQ--------MNVLEVNK--TDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGK-G--FCY- 116 (171)
Q Consensus 51 ~F~vGD~LvF~y~~~~--------hsV~~V~~--~~Y~~C~~~~p~~~~~~G~g~~~v~L~~~g~~YFic~~-g--HC~- 116 (171)
+++.||++.++..+.. |.+.+... .|=-.=....++....+=. ..|+++++|+|||-|-. . |=.
T Consensus 38 ~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq~~I~PG~~~~--y~f~~~~~Gt~wyH~H~~~~~q~~~ 115 (339)
T 2zwn_A 38 HVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYT--YKFKADRIGTLWYHCHVNVNEHVGV 115 (339)
T ss_dssp EEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEE--EEEECCSCEEEEEECCSSHHHHTTT
T ss_pred EEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccccCccCCCCeEE--EEEECCCCEEEEEEecCCchhhhhc
Q ss_pred CCCeEEEEeeCCCCCC
Q 030811 117 GGMKLAVRVENPPPPP 132 (171)
Q Consensus 117 ~GmKl~I~V~~~~~~p 132 (171)
.||--.+.|.+..+.+
T Consensus 116 ~Gl~G~liV~p~~~~~ 131 (339)
T 2zwn_A 116 RGMWGPLIVDPKQPLP 131 (339)
T ss_dssp SCCEEEEEEECSSCCT
T ss_pred CCceEeEEecCCCccc
No 74
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=36.62 E-value=34 Score=28.23 Aligned_cols=80 Identities=13% Similarity=0.015 Sum_probs=43.9
Q ss_pred CceeeCCEEEEEeecC---CceEEEE--cc---ccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCc-C-cC--c
Q 030811 50 KHFYNGDWLFFVYDRN---QMNVLEV--NK---TDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGK-G-FC--Y 116 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~---~hsV~~V--~~---~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~-g-HC--~ 116 (171)
.+++.||+|+.++.+. .|++..= .. ...|.=.. ..-.....|.. ...++.+++|++||-|-. . .. .
T Consensus 36 i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~-~t~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~~~ 114 (318)
T 3g5w_A 36 IHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPH-ATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTM 114 (318)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBT-TTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHHHH
T ss_pred EEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcc-cccccCCCCCEEEEEEEcCCCEEEEEEccCChhhhhcc
Confidence 4678999999998753 3343221 10 01111000 00011233421 125778899999999987 2 12 2
Q ss_pred CCCeEEEEeeCCCC
Q 030811 117 GGMKLAVRVENPPP 130 (171)
Q Consensus 117 ~GmKl~I~V~~~~~ 130 (171)
.||.-.+.|....+
T Consensus 115 ~Gl~G~lIV~~~~~ 128 (318)
T 3g5w_A 115 RGMWGPLIVEPKNP 128 (318)
T ss_dssp SCCEEEEEEECSSC
T ss_pred CCCEEEEEEcCCCc
Confidence 79998988875443
No 75
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}
Probab=36.15 E-value=14 Score=25.84 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=16.0
Q ss_pred ccCceEEEEeCcCcC--cCCCeEEEEeeCCCCCC
Q 030811 101 NVTRHYYFISGKGFC--YGGMKLAVRVENPPPPP 132 (171)
Q Consensus 101 ~~~g~~YFic~~gHC--~~GmKl~I~V~~~~~~p 132 (171)
...|.|| |.+.++ ..+.++.+.|..++++|
T Consensus 85 ~Dsg~Y~--C~~~~~~~~~~~~v~L~V~~~~~~~ 116 (124)
T 2nms_A 85 TDADTYW--CGIEKTGNDLGVTVQVTIDPAPVTQ 116 (124)
T ss_dssp GGCEEEE--EEEEETTEEEEEEEEEEEECCC---
T ss_pred HHCEEEE--EEEEcCCCCccEEEEEEEeCCCcCC
Confidence 4556654 555222 45567888887765543
No 76
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=34.02 E-value=5.1 Score=33.07 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=19.2
Q ss_pred eEEcccCceEEEEeCc-CcCcCCCeEEEEeeCC
Q 030811 97 VVPLNVTRHYYFISGK-GFCYGGMKLAVRVENP 128 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-gHC~~GmKl~I~V~~~ 128 (171)
.++.+++|.+.|.|-. .|-..||...+.|...
T Consensus 269 ~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp -------CCCCCBCCSTTTGGGTCBCCC-----
T ss_pred EEEcCCCeEEEEEeCChHHHhcCCeEEEEEecC
Confidence 4566789999999999 9999999998888743
No 77
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=33.44 E-value=39 Score=28.85 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=28.5
Q ss_pred eEEcccCceEEEEeCc-CcC-cCCCeEEEEeeCCCC
Q 030811 97 VVPLNVTRHYYFISGK-GFC-YGGMKLAVRVENPPP 130 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-gHC-~~GmKl~I~V~~~~~ 130 (171)
.|+.+++|.|+|.|.. .|+ ..||...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 4677889999999998 887 789988888876654
No 78
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=31.86 E-value=80 Score=28.02 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=46.7
Q ss_pred CceeeCCEEEEEeecCCc----eE-----EEEccccCCC-cCC-CCCCccccCCCc-ceeEEcc-cCceEEEEeCc-CcC
Q 030811 50 KHFYNGDWLFFVYDRNQM----NV-----LEVNKTDYES-CNS-DHPLHNWTTGAG-RDVVPLN-VTRHYYFISGK-GFC 115 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~h----sV-----~~V~~~~Y~~-C~~-~~p~~~~~~G~g-~~~v~L~-~~g~~YFic~~-gHC 115 (171)
-+++.||+|+.++.+... ++ .+-.....|. -.. ..+ ...|.. ...++++ ..|+|||-|-. .|=
T Consensus 36 i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq~p---I~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~ 112 (534)
T 1zpu_A 36 ITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCP---IAPGSTMLYNFTVDYNVGTYWYHSHTDGQY 112 (534)
T ss_dssp EEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTBCC---BCTTCEEEEEEECSSCCEEEEEECCSSSGG
T ss_pred EEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccccCC---cCCCCeEEEEEEeCccceeEEEEEcCcccc
Confidence 467899999999876432 22 1100011111 000 011 233421 1357777 89999999998 877
Q ss_pred cCCCeEEEEeeCCC
Q 030811 116 YGGMKLAVRVENPP 129 (171)
Q Consensus 116 ~~GmKl~I~V~~~~ 129 (171)
..||.-.+.|..+.
T Consensus 113 ~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 113 EDGMKGLFIIKDDS 126 (534)
T ss_dssp GGTCEEEEEEECTT
T ss_pred cCcceeeEEeCCCC
Confidence 78999999998764
No 79
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=31.58 E-value=13 Score=27.87 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCCCCCCCccccccCCceeeCCEEEEEeec-----------CCceEEEEccccCC
Q 030811 35 QGWTNNVNYTIWAKDKHFYNGDWLFFVYDR-----------NQMNVLEVNKTDYE 78 (171)
Q Consensus 35 ~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~-----------~~hsV~~V~~~~Y~ 78 (171)
.||. ++||.+...-+..++||.+.|-.++ +.--+.+|..+.|.
T Consensus 19 ~g~~-GVn~~arn~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 19 HNVW-GVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp HCEE-EECGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred cCcc-ccCHHHHHHHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 3566 6799888777799999999876653 22345777666665
No 80
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=31.43 E-value=26 Score=23.59 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.8
Q ss_pred ccCCceeeCCEEEEEeec
Q 030811 47 AKDKHFYNGDWLFFVYDR 64 (171)
Q Consensus 47 a~~~~F~vGD~LvF~y~~ 64 (171)
+.-..+++||.+.|.+..
T Consensus 49 ~~l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 49 TKMSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp CEECCCCTTCEEEEEEEE
T ss_pred hhhhcCCCCCEEEEEEEE
Confidence 344679999999999985
No 81
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=31.32 E-value=63 Score=28.85 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=28.4
Q ss_pred eEEcccCceEEEEeCc-CcCcCCCeEEEEeeCCC
Q 030811 97 VVPLNVTRHYYFISGK-GFCYGGMKLAVRVENPP 129 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-gHC~~GmKl~I~V~~~~ 129 (171)
.++++++|+|||-|-. .|=..||--.+.|..+.
T Consensus 126 ~f~~~q~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 159 (559)
T 2q9o_A 126 RWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPA 159 (559)
T ss_dssp EEECCSCEEEEEEECSTTGGGGTCEEEEEEECCC
T ss_pred EEECCCCEEEEEEEcccchhcCCceEEEEecCCC
Confidence 5788899999999998 77788999999998643
No 82
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=31.23 E-value=20 Score=25.15 Aligned_cols=30 Identities=7% Similarity=0.143 Sum_probs=24.4
Q ss_pred EEEecCCCCCCCCCCccccccCCceeeCCEEEEEe
Q 030811 28 RWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVY 62 (171)
Q Consensus 28 ~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y 62 (171)
+.++||+.| ....+-|... |+.||.+.++.
T Consensus 41 ~~~l~DeTG---~I~~tlW~~~--l~~Gdvv~i~n 70 (106)
T 2k75_A 41 QGYIEDDTA---RIRISSFGKQ--LQDSDVVRIDN 70 (106)
T ss_dssp EEEEECSSC---EEEEEEESSC--CCTTEEEEEEE
T ss_pred EEEEEcCCC---eEEEEEEcCc--cCCCCEEEEEe
Confidence 578999877 4567889877 99999999883
No 83
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=30.59 E-value=79 Score=25.88 Aligned_cols=34 Identities=9% Similarity=-0.029 Sum_probs=27.3
Q ss_pred eEEcccCceEEEEeCc-C-cCcCCCeEEEEeeCCCC
Q 030811 97 VVPLNVTRHYYFISGK-G-FCYGGMKLAVRVENPPP 130 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-g-HC~~GmKl~I~V~~~~~ 130 (171)
.|+.+++|.|+|.|-. . |=+.||.-.|.|.....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~~ 327 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEWN 327 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCCc
Confidence 4667889999999998 4 54789998899986554
No 84
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=30.56 E-value=14 Score=26.87 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=10.8
Q ss_pred CceeeCCEEEEEe
Q 030811 50 KHFYNGDWLFFVY 62 (171)
Q Consensus 50 ~~F~vGD~LvF~y 62 (171)
+.+++||+|+|+-
T Consensus 33 ~~i~vGD~I~f~~ 45 (113)
T 1xne_A 33 KDIKRGDKIIFND 45 (113)
T ss_dssp TTCCTTCEEEETT
T ss_pred hccCCCCEEEEcc
Confidence 5689999999943
No 85
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=30.13 E-value=27 Score=23.91 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=16.6
Q ss_pred cccccCCceeeCCEEEEEeec
Q 030811 44 TIWAKDKHFYNGDWLFFVYDR 64 (171)
Q Consensus 44 ~~Wa~~~~F~vGD~LvF~y~~ 64 (171)
.+.+.-..+++||.+.|.+..
T Consensus 54 ~~~~~l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 54 TPQTKMSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp CTTCEECCCCTTCEEEEEEEE
T ss_pred CChhhhhcCCCCCEEEEEEEE
Confidence 344455789999999999985
No 86
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=29.25 E-value=50 Score=26.49 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=25.9
Q ss_pred cCceEEEEeCc-CcCcCCCeEEEEeeCCCC
Q 030811 102 VTRHYYFISGK-GFCYGGMKLAVRVENPPP 130 (171)
Q Consensus 102 ~~g~~YFic~~-gHC~~GmKl~I~V~~~~~ 130 (171)
.+|.++|-|-. .|=+.||...+.|.....
T Consensus 239 npG~w~~HCH~~~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 239 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeEEEECCCchHhhCCCeEEEEEeCCCC
Confidence 58999999999 999999999999987644
No 87
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=29.12 E-value=1.1e+02 Score=26.99 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=46.8
Q ss_pred CceeeCCEEEEEeecCC----ceEEE----Ecccc-CCCcCCCCCC-ccccCCCc-ceeEEcccCceEEEEeCc-CcCcC
Q 030811 50 KHFYNGDWLFFVYDRNQ----MNVLE----VNKTD-YESCNSDHPL-HNWTTGAG-RDVVPLNVTRHYYFISGK-GFCYG 117 (171)
Q Consensus 50 ~~F~vGD~LvF~y~~~~----hsV~~----V~~~~-Y~~C~~~~p~-~~~~~G~g-~~~v~L~~~g~~YFic~~-gHC~~ 117 (171)
.+++.||+|+.++.+.. +++.- +.... .|.= ..-. .....|.. ...++++.+|+|||-|-. .+=..
T Consensus 36 I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv--~~vtq~~I~PG~s~tY~f~~~~~GT~wYHsH~~~q~~~ 113 (552)
T 1aoz_A 36 IRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGT--ASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSA 113 (552)
T ss_dssp EEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCC--BTTTBCCBCTTCEEEEEEECCSCEEEEEEECSTTTGGG
T ss_pred EEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCC--cccccCCcCCCCeEEEEEECCCCEEEEEEECchhHHhc
Confidence 46789999999887532 33321 11110 1110 0000 01233421 135777899999999998 77778
Q ss_pred CCeEEEEeeCCC
Q 030811 118 GMKLAVRVENPP 129 (171)
Q Consensus 118 GmKl~I~V~~~~ 129 (171)
||--.+.|..+.
T Consensus 114 Gl~G~liV~~~~ 125 (552)
T 1aoz_A 114 GLYGSLIVDPPQ 125 (552)
T ss_dssp TCEEEEEEECCT
T ss_pred cCeeeEEEeCCc
Confidence 999999998764
No 88
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=28.82 E-value=34 Score=22.95 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.4
Q ss_pred cCCceeeCCEEEEEeecC
Q 030811 48 KDKHFYNGDWLFFVYDRN 65 (171)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~ 65 (171)
-++.|.+||.|+|--+.+
T Consensus 26 ~rN~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEI 43 (89)
T ss_dssp ESSCBCTTCEEEEESTTS
T ss_pred EcCCcCCCCEEEEEcCCC
Confidence 367899999999886544
No 89
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}
Probab=28.33 E-value=41 Score=23.29 Aligned_cols=11 Identities=18% Similarity=0.008 Sum_probs=5.5
Q ss_pred ccCceEEEEeC
Q 030811 101 NVTRHYYFISG 111 (171)
Q Consensus 101 ~~~g~~YFic~ 111 (171)
...|.||-...
T Consensus 85 ~Dsg~Y~C~~~ 95 (129)
T 3rrq_A 85 NDSGTYLCGAI 95 (129)
T ss_dssp GGCEEEEEEEE
T ss_pred hHCEEEEEEEE
Confidence 45566554433
No 90
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=27.41 E-value=1.1e+02 Score=27.03 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=27.3
Q ss_pred eEEc-ccCceEEEEeCc-CcCcCCCeEEEEeeCCC
Q 030811 97 VVPL-NVTRHYYFISGK-GFCYGGMKLAVRVENPP 129 (171)
Q Consensus 97 ~v~L-~~~g~~YFic~~-gHC~~GmKl~I~V~~~~ 129 (171)
.|++ ++.|+|||-|-. .|=..||--.+.|..+.
T Consensus 97 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~ 131 (495)
T 3t6v_A 97 NFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPN 131 (495)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEeCCCCceeeeeccchhHHhcCceEEEEEcCcc
Confidence 5677 679999999998 77778999999998654
No 91
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=27.05 E-value=58 Score=27.17 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=26.3
Q ss_pred ccCceEEEEeCc-CcCcCCCeEEEEeeCCCC
Q 030811 101 NVTRHYYFISGK-GFCYGGMKLAVRVENPPP 130 (171)
Q Consensus 101 ~~~g~~YFic~~-gHC~~GmKl~I~V~~~~~ 130 (171)
+.+|.++|-|-. .|=+.||...+.|.....
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~ 309 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 309 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCCC
Confidence 579999999999 999999999999986544
No 92
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=25.81 E-value=1.2e+02 Score=26.79 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=27.2
Q ss_pred eEEc-ccCceEEEEeCc-CcCcCCCeEEEEeeCCC
Q 030811 97 VVPL-NVTRHYYFISGK-GFCYGGMKLAVRVENPP 129 (171)
Q Consensus 97 ~v~L-~~~g~~YFic~~-gHC~~GmKl~I~V~~~~ 129 (171)
.|++ ++.|+|||-|-. .|=..||--.+.|..+.
T Consensus 96 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~ 130 (499)
T 3pxl_A 96 DFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN 130 (499)
T ss_dssp EEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEcCCCCceeeeeccchhHHhccceeEEEEcCCc
Confidence 5677 679999999998 77778999999998654
No 93
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=25.80 E-value=1.2e+02 Score=27.38 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=27.9
Q ss_pred eEEcccCceEEEEeCc-CcCcCCCeEEEEeeCCC
Q 030811 97 VVPLNVTRHYYFISGK-GFCYGGMKLAVRVENPP 129 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-gHC~~GmKl~I~V~~~~ 129 (171)
.|+++++|+|||-|-. .+=..|+--.|.|..+.
T Consensus 156 ~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p~ 189 (580)
T 3sqr_A 156 KFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPA 189 (580)
T ss_dssp EEECCCCEEEEEEECSTTGGGGTCEEEEEEECCC
T ss_pred EEECCCCcceEEeecccccccCcCEEEEEeeCcc
Confidence 5778899999999998 77778999999998644
No 94
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=25.06 E-value=35 Score=23.06 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=16.6
Q ss_pred cccccCCceeeCCEEEEEeec
Q 030811 44 TIWAKDKHFYNGDWLFFVYDR 64 (171)
Q Consensus 44 ~~Wa~~~~F~vGD~LvF~y~~ 64 (171)
.+-+.-..+++||.+.|.+..
T Consensus 40 ~~~~~l~~lk~Gd~V~F~~~~ 60 (82)
T 2l55_A 40 PPAGLPQGLKAGDRVAFSFRL 60 (82)
T ss_dssp CTTCCCSSCSTTCEEEEEEEE
T ss_pred CChhHhhcCCCCCEEEEEEEE
Confidence 344456789999999999985
No 95
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=24.63 E-value=59 Score=21.54 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=29.7
Q ss_pred CCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCC--ccccCCCcceeEEcc
Q 030811 49 DKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPL--HNWTTGAGRDVVPLN 101 (171)
Q Consensus 49 ~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~--~~~~~G~g~~~v~L~ 101 (171)
..+|.+||++.=+| +|.+.-+++--.+++ ..+++ -.|.+| ++.+|.
T Consensus 7 ~~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s~~~~Y~V~fKdg---T~e~L~ 54 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-PGSVLYYEVQVTSYD---DASHLYTVKYKDG---TELALK 54 (66)
T ss_dssp SSSSCSSCEEEEEC-TTSSCEEEEEEEEEE---TTTTEEEEEETTS---CEEEEE
T ss_pred ceEeecCCEEEEEc-CCCccceEEEEEEec---cCCceEEEEecCC---CEEeec
Confidence 46899999999999 677777666444444 45554 235565 344553
No 96
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=23.66 E-value=78 Score=30.70 Aligned_cols=77 Identities=4% Similarity=-0.025 Sum_probs=48.7
Q ss_pred CCceeeCCEEEEEeec-C----CceEEEEccccCCCcCCCCCC--ccc--cCCCc-ceeEEcccCceEEEEeCc-CcCcC
Q 030811 49 DKHFYNGDWLFFVYDR-N----QMNVLEVNKTDYESCNSDHPL--HNW--TTGAG-RDVVPLNVTRHYYFISGK-GFCYG 117 (171)
Q Consensus 49 ~~~F~vGD~LvF~y~~-~----~hsV~~V~~~~Y~~C~~~~p~--~~~--~~G~g-~~~v~L~~~g~~YFic~~-gHC~~ 117 (171)
.-+++.|+++.|..-+ + .|++.. ....+. .+|. ..+ ..|.. ...|+.+++|.|+|.|-. .|=+.
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~~~i-~Gh~f~----v~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~~ 346 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAAFF-HGQALT----NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKA 346 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEEEE-TTCCEE----ETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHHT
T ss_pred ceEECCCCEEEEEEEcCCcccceeEEEE-cCCEEE----ECCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhhC
Confidence 3578899999998864 2 244322 222222 1121 112 23321 124677889999999999 99889
Q ss_pred CCeEEEEeeCCCC
Q 030811 118 GMKLAVRVENPPP 130 (171)
Q Consensus 118 GmKl~I~V~~~~~ 130 (171)
||...+.|...+.
T Consensus 347 Gm~~~~~V~~~~~ 359 (1065)
T 2j5w_A 347 GLQAFFQVQECNK 359 (1065)
T ss_dssp TCEEEEEEECSCC
T ss_pred CCEEEEEEecCCC
Confidence 9999999986555
No 97
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=22.17 E-value=59 Score=29.39 Aligned_cols=31 Identities=6% Similarity=0.066 Sum_probs=27.2
Q ss_pred eEEcccCceEEEEeCc-CcCcCCCeEEEEeeC
Q 030811 97 VVPLNVTRHYYFISGK-GFCYGGMKLAVRVEN 127 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-gHC~~GmKl~I~V~~ 127 (171)
.|..+.+|.+.|-|-. .|-..||...+.|..
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 3566789999999999 999999999999964
No 98
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=22.15 E-value=88 Score=26.51 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=28.2
Q ss_pred eEEcccCceEEEEeCc-CcCcCCCeEEEEeeCCCC
Q 030811 97 VVPLNVTRHYYFISGK-GFCYGGMKLAVRVENPPP 130 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-gHC~~GmKl~I~V~~~~~ 130 (171)
.|..+.+|.++|-|-. .|=..||...+.|...+.
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~~ 436 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPKN 436 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGTCCEEEEECSCSC
T ss_pred EEECCCCEEEEEEecCcCccccCCEEEEEEeCCCC
Confidence 3566889999999999 887789999999876554
No 99
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=22.00 E-value=1.1e+02 Score=25.21 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=27.3
Q ss_pred eEEcccCceEEEEeCc-CcCc------CCCeEEEEeeCCC
Q 030811 97 VVPLNVTRHYYFISGK-GFCY------GGMKLAVRVENPP 129 (171)
Q Consensus 97 ~v~L~~~g~~YFic~~-gHC~------~GmKl~I~V~~~~ 129 (171)
.++.+.+|.+.|-|-. .|-. .||...|.+...+
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 4567889999999999 8887 5788888887765
No 100
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=20.69 E-value=1.2e+02 Score=29.32 Aligned_cols=75 Identities=11% Similarity=0.028 Sum_probs=49.8
Q ss_pred CCceeeCCEEEEEeec-C----CceEEEEc------cccCCCcCCCCCCccccCCCc-ceeEEcccCceEEEEeCc-CcC
Q 030811 49 DKHFYNGDWLFFVYDR-N----QMNVLEVN------KTDYESCNSDHPLHNWTTGAG-RDVVPLNVTRHYYFISGK-GFC 115 (171)
Q Consensus 49 ~~~F~vGD~LvF~y~~-~----~hsV~~V~------~~~Y~~C~~~~p~~~~~~G~g-~~~v~L~~~g~~YFic~~-gHC 115 (171)
.-++..||.|+..-.. + -|++.+-. ...+++|.. ..|.. ...++.+.+|++++-|-. +|=
T Consensus 633 ~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~i-------~pg~~~t~~~~~~~~Gt~~~h~h~~~~~ 705 (1065)
T 2j5w_A 633 GLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANL-------FPQTSLTLHMWPDTEGTFNVECLTTDHY 705 (1065)
T ss_dssp CCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEE-------CTTCEEEEEECCCSCEEEEEEECSHHHH
T ss_pred ceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEee-------cCCceEEEEEecCCCeEEEEecCCCccc
Confidence 4578999999887763 2 35664421 222334432 22321 135677899999999999 888
Q ss_pred cCCCeEEEEeeCCCC
Q 030811 116 YGGMKLAVRVENPPP 130 (171)
Q Consensus 116 ~~GmKl~I~V~~~~~ 130 (171)
..||+..+.|.....
T Consensus 706 ~~Gm~g~~~V~~~~~ 720 (1065)
T 2j5w_A 706 TGGMKQKYTVNQCRR 720 (1065)
T ss_dssp HTTCEEEEEEECCSC
T ss_pred CCCcEEEEEEcCCcc
Confidence 899999999976533
Done!