Query 030812
Match_columns 171
No_of_seqs 163 out of 596
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:26:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 5.4E-32 1.8E-36 220.4 11.4 98 26-124 9-106 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 2.3E-31 7.9E-36 206.1 11.6 102 26-127 3-104 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 1.7E-30 5.9E-35 189.9 11.0 92 26-117 2-93 (93)
4 3b0c_W CENP-W, centromere prot 99.9 5.7E-23 1.9E-27 145.5 7.9 68 31-99 3-70 (76)
5 1f1e_A Histone fold protein; a 99.9 1.1E-21 3.9E-26 156.2 8.2 75 31-106 3-77 (154)
6 3b0c_T CENP-T, centromere prot 99.8 1.1E-19 3.9E-24 137.5 9.1 91 28-120 3-95 (111)
7 1b67_A Protein (histone HMFA); 99.8 9.5E-20 3.2E-24 125.6 7.8 66 32-99 2-67 (68)
8 2byk_A Chrac-16; nucleosome sl 99.8 1.9E-19 6.5E-24 141.3 3.4 96 28-124 15-114 (140)
9 1f1e_A Histone fold protein; a 99.7 1.7E-17 5.7E-22 132.2 9.2 72 25-98 75-146 (154)
10 4g92_C HAPE; transcription fac 99.7 4.1E-17 1.4E-21 124.4 7.8 78 27-105 36-113 (119)
11 1n1j_B NF-YC; histone-like PAI 99.7 5.4E-17 1.9E-21 119.5 7.4 80 26-106 13-92 (97)
12 1id3_B Histone H4; nucleosome 99.7 9.1E-17 3.1E-21 119.9 8.4 78 25-104 21-98 (102)
13 2hue_C Histone H4; mini beta s 99.7 1E-16 3.5E-21 115.4 6.8 77 26-104 4-80 (84)
14 1tzy_D Histone H4-VI; histone- 99.6 1.5E-15 5.2E-20 113.0 8.4 78 25-104 22-99 (103)
15 1ku5_A HPHA, archaeal histon; 99.6 1.6E-15 5.6E-20 105.2 7.8 64 32-97 6-69 (70)
16 2yfw_B Histone H4, H4; cell cy 99.6 2.2E-15 7.4E-20 112.2 7.6 78 25-104 22-99 (103)
17 1jfi_A Transcription regulator 99.4 2.8E-13 9.7E-18 100.0 5.4 76 30-106 9-84 (98)
18 2hue_B Histone H3; mini beta s 99.2 1.4E-10 4.9E-15 82.8 8.9 71 30-100 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.0 4.5E-10 1.5E-14 83.8 7.0 72 26-97 21-98 (100)
20 3nqj_A Histone H3-like centrom 99.0 5.5E-10 1.9E-14 80.7 7.1 70 31-100 2-76 (82)
21 3r45_A Histone H3-like centrom 99.0 1E-09 3.5E-14 87.5 7.1 73 27-99 72-149 (156)
22 3nqu_A Histone H3-like centrom 99.0 1E-09 3.6E-14 86.2 6.7 75 27-101 56-135 (140)
23 1tzy_C Histone H3; histone-fol 98.9 2.2E-09 7.5E-14 83.9 7.9 74 27-100 57-133 (136)
24 1taf_B TFIID TBP associated fa 98.8 1.4E-08 4.6E-13 71.3 8.3 65 31-97 5-69 (70)
25 4dra_A Centromere protein S; D 98.8 9E-09 3.1E-13 78.3 7.8 77 37-119 32-109 (113)
26 3v9r_A MHF1, uncharacterized p 98.7 2.8E-08 9.7E-13 72.7 7.4 62 37-98 17-79 (90)
27 3vh5_A CENP-S; histone fold, c 98.7 1E-08 3.4E-13 80.6 5.2 75 37-117 24-99 (140)
28 3b0b_B CENP-S, centromere prot 98.7 3.1E-08 1.1E-12 74.6 7.5 76 37-118 24-100 (107)
29 2nqb_C Histone H2A; nucleosome 98.5 2.7E-07 9.4E-12 70.7 8.1 69 29-98 20-88 (123)
30 1f66_C Histone H2A.Z; nucleoso 98.5 3E-07 1E-11 70.9 8.1 70 29-98 24-93 (128)
31 1id3_C Histone H2A.1; nucleoso 98.5 3.2E-07 1.1E-11 71.1 8.1 69 29-98 22-90 (131)
32 1tzy_A Histone H2A-IV; histone 98.5 3.5E-07 1.2E-11 70.6 8.1 69 29-98 22-90 (129)
33 2f8n_G Core histone macro-H2A. 98.5 4.3E-07 1.5E-11 69.4 8.1 69 29-98 19-87 (120)
34 1taf_A TFIID TBP associated fa 98.5 7.3E-07 2.5E-11 62.1 8.3 61 36-98 5-65 (68)
35 2f8n_K Histone H2A type 1; nuc 98.4 6.3E-07 2.1E-11 70.9 8.0 69 29-98 41-109 (149)
36 2ly8_A Budding yeast chaperone 98.4 3.9E-07 1.4E-11 69.9 6.6 54 51-104 64-117 (121)
37 2nqb_D Histone H2B; nucleosome 98.3 1.3E-06 4.4E-11 67.3 7.7 64 36-100 37-100 (123)
38 1tzy_B Histone H2B; histone-fo 98.3 1.7E-06 5.7E-11 66.9 7.6 63 37-100 41-103 (126)
39 2jss_A Chimera of histone H2B. 98.3 2E-06 6.7E-11 69.9 8.0 69 30-98 103-171 (192)
40 2l5a_A Histone H3-like centrom 98.1 3.9E-06 1.3E-10 70.7 6.8 71 30-100 9-85 (235)
41 2l5a_A Histone H3-like centrom 98.1 1.9E-06 6.6E-11 72.6 4.4 59 40-100 169-227 (235)
42 2jss_A Chimera of histone H2B. 98.0 1.8E-05 6E-10 64.3 8.3 63 36-99 7-69 (192)
43 4dra_E Centromere protein X; D 97.9 4.9E-05 1.7E-09 55.0 8.7 70 30-99 10-80 (84)
44 3b0b_C CENP-X, centromere prot 97.9 5.6E-05 1.9E-09 54.2 8.4 73 27-99 3-76 (81)
45 1h3o_B Transcription initiatio 97.8 0.00016 5.5E-09 51.3 8.6 67 31-98 4-70 (76)
46 1bh9_B TAFII28; histone fold, 97.5 0.00051 1.7E-08 49.9 8.2 67 32-100 16-83 (89)
47 3v9r_B MHF2, uncharacterized p 96.7 0.0032 1.1E-07 45.9 5.5 47 33-79 2-49 (88)
48 2ly8_A Budding yeast chaperone 96.5 0.0067 2.3E-07 46.4 6.7 87 32-120 1-96 (121)
49 3uk6_A RUVB-like 2; hexameric 91.8 0.35 1.2E-05 39.8 6.4 66 33-98 259-329 (368)
50 3ksy_A SOS-1, SON of sevenless 87.2 2 6.9E-05 42.0 8.7 67 30-98 102-168 (1049)
51 2c9o_A RUVB-like 1; hexameric 86.4 1.2 4.3E-05 38.7 6.2 67 32-98 365-436 (456)
52 1fnn_A CDC6P, cell division co 85.4 3.9 0.00013 33.3 8.4 76 33-108 193-283 (389)
53 2v1u_A Cell division control p 83.9 1.5 5.3E-05 35.5 5.2 66 35-100 203-277 (387)
54 1k6k_A ATP-dependent CLP prote 81.9 3.7 0.00013 29.6 6.2 33 52-96 2-34 (143)
55 3kw6_A 26S protease regulatory 80.1 1.8 6.2E-05 28.8 3.6 43 57-99 27-73 (78)
56 1khy_A CLPB protein; alpha hel 79.5 5.1 0.00017 29.0 6.2 38 51-100 5-42 (148)
57 2qby_A CDC6 homolog 1, cell di 78.6 6.7 0.00023 31.5 7.3 74 33-106 197-279 (386)
58 3k1j_A LON protease, ATP-depen 77.2 13 0.00045 33.5 9.5 49 50-98 313-374 (604)
59 3fh2_A Probable ATP-dependent 76.6 3.4 0.00012 30.4 4.6 37 51-99 6-42 (146)
60 2y1q_A CLPC N-domain, negative 76.5 4 0.00014 29.7 4.9 38 51-100 5-42 (150)
61 2dzn_B 26S protease regulatory 72.5 4.1 0.00014 27.4 3.8 30 71-100 40-69 (82)
62 2r44_A Uncharacterized protein 72.2 19 0.00066 29.0 8.5 51 49-99 224-297 (331)
63 3vlf_B 26S protease regulatory 72.0 4.2 0.00014 27.9 3.8 34 68-101 40-73 (88)
64 3fes_A ATP-dependent CLP endop 71.6 7.6 0.00026 28.4 5.4 38 51-100 7-44 (145)
65 3aji_B S6C, proteasome (prosom 71.5 3.6 0.00012 27.5 3.4 33 68-100 40-72 (83)
66 2krk_A 26S protease regulatory 69.8 4.6 0.00016 27.8 3.6 32 68-99 50-81 (86)
67 1g8p_A Magnesium-chelatase 38 68.1 14 0.00049 29.6 6.8 51 49-99 265-322 (350)
68 2qby_B CDC6 homolog 3, cell di 65.2 11 0.00037 30.7 5.6 66 33-100 197-271 (384)
69 2i7a_A Calpain 13; calcium-dep 64.4 42 0.0014 25.0 10.1 77 25-102 13-111 (174)
70 3fes_A ATP-dependent CLP endop 59.6 14 0.00047 27.0 4.8 39 50-100 80-118 (145)
71 3zri_A CLPB protein, CLPV; cha 59.0 8.5 0.00029 29.7 3.7 37 51-99 24-60 (171)
72 2chg_A Replication factor C sm 58.8 15 0.00053 26.5 4.9 63 33-97 161-224 (226)
73 3fh2_A Probable ATP-dependent 57.6 30 0.001 25.1 6.3 39 50-100 80-118 (146)
74 1wwi_A Hypothetical protein TT 57.1 25 0.00085 27.5 6.0 58 33-92 3-60 (148)
75 5pal_A Parvalbumin; calcium-bi 56.7 39 0.0013 22.2 6.5 72 33-115 6-89 (109)
76 1in4_A RUVB, holliday junction 55.1 24 0.00083 29.0 6.1 68 36-103 183-254 (334)
77 1k6k_A ATP-dependent CLP prote 54.9 34 0.0012 24.3 6.2 37 50-98 78-114 (143)
78 1r4v_A Hypothetical protein AQ 54.0 19 0.00063 28.9 4.9 64 27-92 19-84 (171)
79 3h4m_A Proteasome-activating n 53.8 21 0.00072 27.9 5.2 33 67-99 226-258 (285)
80 3bos_A Putative DNA replicatio 51.5 38 0.0013 25.0 6.2 61 35-97 176-241 (242)
81 1njg_A DNA polymerase III subu 49.5 23 0.0008 25.7 4.6 63 33-96 185-248 (250)
82 3vfd_A Spastin; ATPase, microt 48.7 1E+02 0.0035 25.7 9.0 69 34-102 283-368 (389)
83 2kru_A Light-independent proto 46.6 17 0.00058 24.5 3.1 51 49-100 3-54 (63)
84 2f3n_A SH3 and multiple ankyri 46.5 15 0.00051 24.5 2.8 22 87-108 5-26 (76)
85 2y1q_A CLPC N-domain, negative 45.6 29 0.00098 24.9 4.5 37 50-98 78-114 (150)
86 3pxg_A Negative regulator of g 44.8 36 0.0012 29.7 5.7 46 51-108 5-50 (468)
87 1w5s_A Origin recognition comp 44.4 72 0.0025 25.9 7.3 68 33-100 215-294 (412)
88 3bq7_A Diacylglycerol kinase d 43.3 18 0.0006 24.4 2.8 24 86-109 9-32 (81)
89 4b4t_I 26S protease regulatory 42.1 22 0.00077 31.9 4.1 66 32-98 351-422 (437)
90 4b4t_L 26S protease subunit RP 41.6 23 0.00079 31.4 4.1 31 68-98 391-421 (437)
91 1lv7_A FTSH; alpha/beta domain 41.3 32 0.0011 26.6 4.4 64 36-100 185-253 (257)
92 3zri_A CLPB protein, CLPV; cha 40.9 36 0.0012 26.1 4.6 37 50-98 97-134 (171)
93 4b4t_H 26S protease regulatory 40.6 23 0.00078 32.1 3.9 31 68-98 419-449 (467)
94 4b4t_M 26S protease regulatory 40.1 24 0.00081 31.3 3.9 33 67-99 390-422 (434)
95 4b4t_J 26S protease regulatory 40.0 27 0.00094 30.8 4.3 32 67-98 357-388 (405)
96 3mse_B Calcium-dependent prote 39.8 1E+02 0.0035 22.1 8.7 63 38-102 6-71 (180)
97 2l09_A ASR4154 protein; proto- 39.7 18 0.00063 24.3 2.4 49 50-99 3-52 (62)
98 1hqc_A RUVB; extended AAA-ATPa 39.4 42 0.0014 26.5 5.0 70 33-102 168-241 (324)
99 3fwb_A Cell division control p 39.0 90 0.0031 21.2 9.1 39 75-113 101-139 (161)
100 2zbk_B Type 2 DNA topoisomeras 38.6 9.7 0.00033 34.7 1.1 60 43-102 427-489 (530)
101 1khy_A CLPB protein; alpha hel 38.3 40 0.0014 24.0 4.3 35 51-97 82-116 (148)
102 4b4t_K 26S protease regulatory 38.0 24 0.00081 31.2 3.5 31 68-98 383-413 (428)
103 1tiz_A Calmodulin-related prot 37.6 61 0.0021 18.9 4.6 38 76-113 7-44 (67)
104 2d8c_A Phosphatidylcholine:cer 37.5 15 0.00051 26.2 1.8 22 87-108 20-41 (97)
105 1exr_A Calmodulin; high resolu 35.9 1E+02 0.0035 21.0 6.6 41 74-114 87-127 (148)
106 1bu3_A Calcium-binding protein 35.4 91 0.0031 20.3 7.3 81 32-114 6-89 (109)
107 3pm8_A PFCDPK2, calcium-depend 34.9 95 0.0033 22.9 6.1 78 31-111 20-98 (197)
108 2lmt_A Calmodulin-related prot 34.7 1.1E+02 0.0039 21.1 6.2 41 74-114 87-127 (148)
109 2ovk_C Myosin catalytic light 34.6 80 0.0028 21.7 5.3 40 74-113 89-128 (159)
110 1kw4_A Polyhomeotic; SAM domai 34.1 27 0.00094 24.2 2.7 24 86-109 16-40 (89)
111 1uxc_A FRUR (1-57), fructose r 34.0 50 0.0017 21.4 3.8 35 32-67 11-45 (65)
112 3pxi_A Negative regulator of g 33.8 62 0.0021 29.8 5.7 38 51-100 5-42 (758)
113 3fs7_A Parvalbumin, thymic; ca 33.7 98 0.0034 20.1 7.5 72 32-114 6-89 (109)
114 1bh9_A TAFII18; histone fold, 33.4 86 0.0029 19.4 5.0 39 38-77 6-44 (45)
115 1rwy_A Parvalbumin alpha; EF-h 32.8 80 0.0027 20.5 4.8 79 33-113 6-87 (109)
116 2kz2_A Calmodulin, CAM; TR2C, 32.7 82 0.0028 20.6 4.9 36 77-112 36-71 (94)
117 1pva_A Parvalbumin; calcium bi 32.4 71 0.0024 20.8 4.5 71 33-114 7-89 (110)
118 3pvs_A Replication-associated 32.1 70 0.0024 27.9 5.6 67 33-100 165-245 (447)
119 2q2e_B Type 2 DNA topoisomeras 31.9 16 0.00056 34.0 1.5 69 27-98 422-492 (621)
120 3pfi_A Holliday junction ATP-d 31.8 42 0.0014 26.9 3.8 69 34-102 185-257 (338)
121 2lv7_A Calcium-binding protein 31.4 46 0.0016 22.7 3.5 40 75-114 41-80 (100)
122 3h4s_E KCBP interacting Ca2+-b 31.2 64 0.0022 22.5 4.3 27 75-101 45-71 (135)
123 3b9p_A CG5977-PA, isoform A; A 31.0 1.3E+02 0.0044 23.5 6.6 59 51-109 208-282 (297)
124 1sxj_D Activator 1 41 kDa subu 30.5 2E+02 0.0068 22.7 9.0 68 32-100 191-264 (353)
125 2gle_A Neurabin-1; SAM domain, 30.3 20 0.00069 23.4 1.4 22 87-108 7-28 (74)
126 2obh_A Centrin-2; DNA repair c 30.2 1.3E+02 0.0045 20.5 6.5 81 33-113 39-122 (143)
127 2qz4_A Paraplegin; AAA+, SPG7, 30.2 21 0.0007 27.4 1.6 32 68-99 218-249 (262)
128 1qvr_A CLPB protein; coiled co 29.6 45 0.0015 31.3 4.1 35 51-97 5-39 (854)
129 3bow_A Calpain-2 catalytic sub 29.4 2.9E+02 0.0099 25.4 9.5 49 65-113 595-648 (714)
130 3i5g_B Myosin regulatory light 29.3 1.5E+02 0.0052 21.1 6.3 54 47-112 5-58 (153)
131 1wlz_A DJBP, CAP-binding prote 28.9 1.2E+02 0.0041 19.6 6.2 28 75-102 29-56 (105)
132 1yfs_A Alanyl-tRNA synthetase; 28.8 1.4E+02 0.0048 27.2 7.0 27 80-106 372-399 (465)
133 1y1x_A Leishmania major homolo 28.7 1.7E+02 0.0057 21.2 9.5 29 74-102 97-125 (191)
134 3i5g_C Myosin catalytic light 28.0 1.2E+02 0.0042 21.8 5.6 39 74-112 89-127 (159)
135 1avs_A Troponin C; muscle cont 28.0 1.1E+02 0.0037 19.3 4.7 38 76-113 26-63 (90)
136 2lfh_A DNA-binding protein inh 27.3 99 0.0034 21.0 4.5 28 42-72 36-66 (68)
137 3j04_B Myosin regulatory light 27.2 90 0.0031 20.9 4.4 39 76-114 82-120 (143)
138 1jr3_A DNA polymerase III subu 27.2 53 0.0018 26.4 3.7 65 32-97 177-242 (373)
139 1u5t_A Appears to BE functiona 27.0 74 0.0025 26.2 4.5 38 64-101 88-143 (233)
140 2kn2_A Calmodulin; S MAPK phos 26.7 1.2E+02 0.004 19.1 4.7 22 81-102 20-41 (92)
141 1ixz_A ATP-dependent metallopr 26.7 46 0.0016 25.6 3.1 58 38-96 191-253 (254)
142 1r6b_X CLPA protein; AAA+, N-t 26.5 51 0.0017 30.2 3.8 34 52-97 2-35 (758)
143 2joj_A Centrin protein; N-term 26.5 1.1E+02 0.0038 18.4 5.0 26 77-102 14-39 (77)
144 1ofh_A ATP-dependent HSL prote 26.3 86 0.0029 24.3 4.7 52 50-101 233-301 (310)
145 2pvb_A Protein (parvalbumin); 26.1 1.4E+02 0.0046 19.3 7.5 80 33-114 6-88 (108)
146 2ktg_A Calmodulin, putative; e 26.0 1.2E+02 0.0041 18.7 5.4 38 76-113 20-57 (85)
147 3f8t_A Predicted ATPase involv 25.7 2.2E+02 0.0076 26.0 7.8 66 32-97 393-481 (506)
148 1s6j_A CDPK, calcium-dependent 25.6 84 0.0029 19.5 3.8 38 77-114 30-67 (87)
149 1rro_A RAT oncomodulin; calciu 25.5 1.4E+02 0.0048 19.3 6.1 67 32-100 5-71 (108)
150 2ovk_B RLC, myosin regulatory 25.0 1.3E+02 0.0043 20.5 5.0 35 79-113 25-59 (153)
151 3f9v_A Minichromosome maintena 24.9 33 0.0011 31.2 2.2 48 51-98 521-586 (595)
152 1j7q_A CAVP, calcium vector pr 24.8 85 0.0029 19.6 3.7 25 78-102 22-46 (86)
153 3sg6_A Gcamp2, myosin light ch 24.4 2.5E+02 0.0087 24.8 7.9 42 74-115 389-430 (450)
154 1uhk_A Aequorin 2, aequorin; E 24.1 1.4E+02 0.0047 21.0 5.1 29 74-102 113-141 (191)
155 1iy2_A ATP-dependent metallopr 23.9 56 0.0019 25.7 3.2 59 37-96 214-277 (278)
156 3cuq_A Vacuolar-sorting protei 23.9 53 0.0018 27.1 3.1 15 85-99 113-127 (234)
157 3pxg_A Negative regulator of g 23.6 1.6E+02 0.0055 25.5 6.3 55 33-99 55-115 (468)
158 1mu5_A Type II DNA topoisomera 23.4 40 0.0014 30.1 2.4 35 43-77 428-462 (471)
159 3d8b_A Fidgetin-like protein 1 23.4 2.8E+02 0.0096 22.7 7.6 63 38-100 256-335 (357)
160 2e8o_A SAM domain and HD domai 23.3 38 0.0013 23.9 1.8 17 87-103 30-46 (103)
161 1jr3_D DNA polymerase III, del 23.0 85 0.0029 25.4 4.2 66 32-97 141-207 (343)
162 1exr_A Calmodulin; high resolu 23.0 1.2E+02 0.004 20.7 4.4 15 83-97 59-73 (148)
163 4ds7_A Calmodulin, CAM; protei 22.8 1.7E+02 0.0058 19.3 10.1 41 75-115 89-129 (147)
164 1qv0_A Obelin, OBL; photoprote 22.7 1.2E+02 0.0042 21.4 4.6 29 74-102 117-145 (195)
165 2chq_A Replication factor C sm 22.5 89 0.003 24.2 4.1 64 33-98 161-225 (319)
166 2opo_A Polcalcin CHE A 3; calc 22.2 1.2E+02 0.0042 18.7 4.1 24 77-100 18-41 (86)
167 1r6b_X CLPA protein; AAA+, N-t 22.1 1.6E+02 0.0055 26.8 6.2 38 50-99 78-115 (758)
168 4a4j_A Pacszia, cation-transpo 21.5 47 0.0016 19.9 1.8 18 85-102 48-65 (69)
169 3ezq_B Protein FADD; apoptosis 21.2 1.4E+02 0.0048 21.8 4.7 36 79-115 57-92 (122)
170 3pxi_A Negative regulator of g 21.2 1.8E+02 0.006 26.7 6.3 56 33-100 55-116 (758)
171 2pmy_A RAS and EF-hand domain- 20.9 1.3E+02 0.0046 19.2 4.2 27 76-102 33-59 (91)
172 3eie_A Vacuolar protein sortin 20.7 1.3E+02 0.0046 24.2 4.9 17 85-101 284-300 (322)
173 2qac_A Myosin A tail domain in 20.4 1.9E+02 0.0065 19.4 5.1 30 80-109 24-54 (146)
174 2mys_B Myosin; muscle protein, 20.3 1.8E+02 0.0063 20.0 5.1 20 82-101 37-56 (166)
175 2obh_A Centrin-2; DNA repair c 20.0 1.2E+02 0.0041 20.7 4.0 12 85-96 57-68 (143)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=5.4e-32 Score=220.36 Aligned_cols=98 Identities=34% Similarity=0.634 Sum_probs=92.1
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcch
Q 030812 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (171)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv 105 (171)
..++|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||++|||++|+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHH
Confidence 6778999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccC
Q 030812 106 DPLKAYLMRYREMEGDTKG 124 (171)
Q Consensus 106 ~~Lk~~L~~yre~~~~kk~ 124 (171)
++|+.+|+.||++.+.|+.
T Consensus 88 ~~lk~~L~~yre~~~~kkr 106 (179)
T 1jfi_B 88 SEVKEVLQECKTVALKRRK 106 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 9999999999998876643
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.97 E-value=2.3e-31 Score=206.06 Aligned_cols=102 Identities=32% Similarity=0.525 Sum_probs=88.0
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcch
Q 030812 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (171)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv 105 (171)
-+++|+.||+|+|.||||+++|++.+||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.+||.+|+
T Consensus 3 e~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl 82 (128)
T 2byk_B 3 ERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV 82 (128)
T ss_dssp --------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH
T ss_pred CccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCC
Q 030812 106 DPLKAYLMRYREMEGDTKGSAR 127 (171)
Q Consensus 106 ~~Lk~~L~~yre~~~~kk~~~k 127 (171)
++|+.+|+.||++.+.|+..++
T Consensus 83 ~~lk~~l~~yr~~~~~kk~~~~ 104 (128)
T 2byk_B 83 PSLTQDLEVYRKVVKEKKESKA 104 (128)
T ss_dssp HHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999988876533
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=1.7e-30 Score=189.89 Aligned_cols=92 Identities=72% Similarity=1.197 Sum_probs=85.9
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcch
Q 030812 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (171)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv 105 (171)
++++|+.||+|+|.||||+.+|++.+||+||+++|++||++||.||+.+|++.|.+++||||+++||++|++.|||.+|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 030812 106 DPLKAYLMRYRE 117 (171)
Q Consensus 106 ~~Lk~~L~~yre 117 (171)
++++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999984
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.88 E-value=5.7e-23 Score=145.49 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=64.8
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 31 ~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
+.||+|+|.||||+++| +.+||+||+++|++|+++||+||+++|++.|.+++||||+++||++|++.+
T Consensus 3 ~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 68999999999999999 689999999999999999999999999999999999999999999999754
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.85 E-value=1.1e-21 Score=156.24 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=72.0
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcchH
Q 030812 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYID 106 (171)
Q Consensus 31 ~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~ 106 (171)
..||+++|.||||++||. .|||+||+++|++|+++|+.||+++|++.|+++|||||+++||+|||..|||++|++
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 379999999999999996 899999999999999999999999999999999999999999999999999999876
No 6
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.80 E-value=1.1e-19 Score=137.45 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=80.0
Q ss_pred cccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcchHH
Q 030812 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDP 107 (171)
Q Consensus 28 ~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~ 107 (171)
.+|+.||+++|.||+|... ..+||+|+.++|.+|+.+|+.+|+.+|...|+++|||||+++||++||+..||..|..+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~g--~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHYV--KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHHH--CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 3678999999999999994 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH--HHHhh
Q 030812 108 LKAYLMRY--REMEG 120 (171)
Q Consensus 108 Lk~~L~~y--re~~~ 120 (171)
+..++++| +|...
T Consensus 81 l~~l~~~~lp~E~~~ 95 (111)
T 3b0c_T 81 LHVLVERHLPLEYRK 95 (111)
T ss_dssp HHHHHHHHSCHHHHH
T ss_pred HHHHHHHhCcHHHHH
Confidence 99999999 66443
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.80 E-value=9.5e-20 Score=125.56 Aligned_cols=66 Identities=33% Similarity=0.443 Sum_probs=63.7
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
.||+++|.||||+. ++.+||+||+++|++|+++||.+|+.+|++.|.++|||||+++||.+|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 5789999999999999999999999999999999999999999999999876
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.76 E-value=1.9e-19 Score=141.27 Aligned_cols=96 Identities=18% Similarity=0.294 Sum_probs=62.2
Q ss_pred cccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccChhhHHHHHHhc---CCCc
Q 030812 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKC-QKEKRKTINGDDLLWAMATL---GFED 103 (171)
Q Consensus 28 ~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~-~~~kRKTI~~eDVl~AL~~L---gF~d 103 (171)
..++.||+|+|.||||.. |+..+|+++|..+|++|++.||.||+.+|+..| +..+||||+++||.+|+... +|..
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 456899999999999988 888899999999999999999999999999999 99999999999999999855 5555
Q ss_pred chHHHHHHHHHHHHHhhcccC
Q 030812 104 YIDPLKAYLMRYREMEGDTKG 124 (171)
Q Consensus 104 yv~~Lk~~L~~yre~~~~kk~ 124 (171)
++-|.+.++..|+++.+.++.
T Consensus 94 divP~ki~l~~~~~~~~~~~~ 114 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLNRS 114 (140)
T ss_dssp TTSCSCC--------------
T ss_pred ccccchhhHHHHHHHHHhccc
Confidence 555999999999998766544
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.72 E-value=1.7e-17 Score=132.21 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=68.3
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 25 ~~~~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
.++.+|+.||+++|.||||+. ...|||+||++.|++|+++|+.+|+++|.+.|++++||||+++||++||+.
T Consensus 75 v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 75 VEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp STTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 467788999999999999999 467999999999999999999999999999999999999999999999985
No 10
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.69 E-value=4.1e-17 Score=124.42 Aligned_cols=78 Identities=24% Similarity=0.335 Sum_probs=71.0
Q ss_pred CcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcch
Q 030812 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (171)
Q Consensus 27 ~~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv 105 (171)
+.....||+|+|.||||.. |+..+||+||..+|++|+++||.+|+.+|+..|+.++||||+++||..|++..+..+|+
T Consensus 36 d~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 36 DYKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp CSSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred ccccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 4456789999999999976 88889999999999999999999999999999999999999999999999876655554
No 11
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.68 E-value=5.4e-17 Score=119.53 Aligned_cols=80 Identities=24% Similarity=0.281 Sum_probs=69.6
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcch
Q 030812 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (171)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv 105 (171)
....+..||+|+|.||||.. |+..+||+||..+|.+|++.||.+|+.+|+..|++++||||+++||.+|++..++.+|+
T Consensus 13 ~~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp -------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CCcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 44566789999999999998 76779999999999999999999999999999999999999999999999999888886
Q ss_pred H
Q 030812 106 D 106 (171)
Q Consensus 106 ~ 106 (171)
.
T Consensus 92 ~ 92 (97)
T 1n1j_B 92 I 92 (97)
T ss_dssp T
T ss_pred H
Confidence 4
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.68 E-value=9.1e-17 Score=119.87 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcc
Q 030812 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (171)
Q Consensus 25 ~~~~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dy 104 (171)
.+++....||+++|.||++.... .+||+|+.++|++|+++|+..|+.+|..+|++++||||+++||.+||+.++|.-|
T Consensus 21 ~~r~~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 21 ILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp ---CCGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HHHhccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 46888889999999999999864 6899999999999999999999999999999999999999999999999999876
No 13
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.66 E-value=1e-16 Score=115.39 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=72.2
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcc
Q 030812 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (171)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dy 104 (171)
.++....||+++|.||++.... .+||+|+.+.+.+|+++|+..|+.+|...|++++||||+++||.+||+.+||.-|
T Consensus 4 ~r~~~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 4 LRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp GGGGCCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred ccccCCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 4667788999999999999864 6899999999999999999999999999999999999999999999999998766
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.61 E-value=1.5e-15 Score=112.98 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=73.3
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcc
Q 030812 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (171)
Q Consensus 25 ~~~~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dy 104 (171)
..++....||+++|.||++.... .+||.|+.+.|.+|+++|+..|+.+|...|++++||||+++||.+||+.++|+.|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 22 VLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred chhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 46777888999999999999875 5899999999999999999999999999999999999999999999999998766
No 15
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.61 E-value=1.6e-15 Score=105.19 Aligned_cols=64 Identities=27% Similarity=0.455 Sum_probs=61.3
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030812 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (171)
.||+++|.||+|+. ...+||+++.++|++|++.|+.+|+..|+..|++.|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 79999999999997 36799999999999999999999999999999999999999999999986
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.59 E-value=2.2e-15 Score=112.24 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=64.3
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcc
Q 030812 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (171)
Q Consensus 25 ~~~~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dy 104 (171)
..++....||+++|.||++.... .+||.|+.+.|.+|++.|+..|+.+|...|++++||||+++||.+||+.++|..|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 22 ILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp --------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 34777788999999999999875 5899999999999999999999999999999999999999999999999998766
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.39 E-value=2.8e-13 Score=99.95 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=59.8
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcchH
Q 030812 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYID 106 (171)
Q Consensus 30 d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~ 106 (171)
...||.+.|.||||.. ++..+||.||..++.++++.|+.+|+..|...|++.+||||+++||..|++.-+..+|+.
T Consensus 9 ~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 9 NARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp -CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred CCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHH
Confidence 4789999999999974 556799999999999999999999999999999999999999999999998766666654
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.16 E-value=1.4e-10 Score=82.82 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=64.8
Q ss_pred cccCchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 30 DRYLPIANISRIMKKALP---ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 30 d~~LP~A~V~RImK~~LP---~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
++.||++++.||+|+... .+.+++.+|..+||++++.|+.-|...|+..|.+.||+||.++||..|.+--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 478999999999999944 36899999999999999999999999999999999999999999999987654
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.03 E-value=4.5e-10 Score=83.76 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCcccccCchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030812 26 VREQDRYLPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (171)
Q Consensus 26 ~~~~d~~LP~A~V~RImK~~LP~------~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (171)
.+..++.||++.+.||+++...+ +.+++.+|..+||++++.|+.-|...|+..|.+.||+||.++||..|..
T Consensus 21 Qkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 21 QRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 45678899999999999999843 6799999999999999999999999999999999999999999998864
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.03 E-value=5.5e-10 Score=80.69 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=64.0
Q ss_pred ccCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 31 RYLPIANISRIMKKALP-----ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 31 ~~LP~A~V~RImK~~LP-----~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
+.||++++.|++|+... .+.+++.+|..+||++++.|+.-|...|+..|.+.||+||.++||..|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 57899999999999883 26799999999999999999999999999999999999999999999986544
No 21
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.97 E-value=1e-09 Score=87.54 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=64.9
Q ss_pred CcccccCchhHHHHHHHhhCCC-----CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 27 REQDRYLPIANISRIMKKALPA-----NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 27 ~~~d~~LP~A~V~RImK~~LP~-----~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
+..++.||++.+.|||+++..+ +.+++.+|.++||++++.|+.-|...|+..|.+.||+||.++||..|+.--
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence 5678899999999999999842 579999999999999999999999999999999999999999999997643
No 22
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.96 E-value=1e-09 Score=86.20 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=66.1
Q ss_pred CcccccCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCC
Q 030812 27 REQDRYLPIANISRIMKKALP-----ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (171)
Q Consensus 27 ~~~d~~LP~A~V~RImK~~LP-----~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (171)
+..++.||++.+.|||+++.. .+.+++.+|..+||++++.|+.-|...|+..|.+.||+||.++||..|..--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 567899999999999999873 267999999999999999999999999999999999999999999999876554
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.94 E-value=2.2e-09 Score=83.95 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=67.6
Q ss_pred CcccccCchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 27 REQDRYLPIANISRIMKKALP---ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 27 ~~~d~~LP~A~V~RImK~~LP---~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
+..++.||++.+.||+++... .+.+|+.+|..+||++++.|+.-|...|+..|.+.||+||.++||..|..--|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 467889999999999999943 46899999999999999999999999999999999999999999999986544
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.84 E-value=1.4e-08 Score=71.35 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=61.1
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030812 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (171)
Q Consensus 31 ~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (171)
-.||+++|.+|+++..- .++++|+...|.+-++..+..|+.+|...+++.||||++.+||-.||+
T Consensus 5 s~lp~~~v~~iaes~Gi--~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV--GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC--CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 47999999999998863 489999999999999999999999999999999999999999999985
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.84 E-value=9e-09 Score=78.32 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=68.0
Q ss_pred HHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHHHH
Q 030812 37 NISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (171)
Q Consensus 37 ~V~RImK~~LP~-~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~~y 115 (171)
+|.||+++...+ ++.||+++..+|.+.+..|+.-|+..+...|++.|||||+++||..+++.. +.|..+|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 588999998764 577999999999999999999999999999999999999999999999873 6677777777
Q ss_pred HHHh
Q 030812 116 REME 119 (171)
Q Consensus 116 re~~ 119 (171)
.+..
T Consensus 106 ~~el 109 (113)
T 4dra_A 106 SEEI 109 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 26
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.8e-08 Score=72.74 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=58.6
Q ss_pred HHHHHHHhhCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 37 NISRIMKKALPAN-GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 37 ~V~RImK~~LP~~-~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
.|.+|+.+.++.. +.||+++..+|.+.+..|+..|+..+...|++.|||||+++||..+++.
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 5889999998865 8899999999999999999999999999999999999999999999875
No 27
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.73 E-value=1e-08 Score=80.60 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=64.3
Q ss_pred HHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHHHH
Q 030812 37 NISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (171)
Q Consensus 37 ~V~RImK~~LP~-~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~~y 115 (171)
+|.||+++...+ ++.||+++..+|.+.+..|+..|+..+...|++.|||||+++||..+++.. +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 578999987654 678999999999999999999999999999999999999999999999874 4455555555
Q ss_pred HH
Q 030812 116 RE 117 (171)
Q Consensus 116 re 117 (171)
.+
T Consensus 98 ~~ 99 (140)
T 3vh5_A 98 SD 99 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 28
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.72 E-value=3.1e-08 Score=74.56 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=64.9
Q ss_pred HHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHHHH
Q 030812 37 NISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (171)
Q Consensus 37 ~V~RImK~~LP~-~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~~y 115 (171)
+|.||+++...+ +.++|+++..+|.+.+..|+.-|+..|...|++.|||||+.+||..|++.. +.|...|..|
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHH
Confidence 488999988642 468999999999999999999999999999999999999999999999874 4555556655
Q ss_pred HHH
Q 030812 116 REM 118 (171)
Q Consensus 116 re~ 118 (171)
.+.
T Consensus 98 ~~e 100 (107)
T 3b0b_B 98 SDE 100 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 29
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.53 E-value=2.7e-07 Score=70.68 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=63.3
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
-.+.||.+.|.|+||+.-- ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 20 agL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 3589999999999999843 24999999999999999999999999999999999999999999999874
No 30
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.52 E-value=3e-07 Score=70.95 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=64.3
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
-.+.||.+.|.|+||+.-....||+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|+..
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 3589999999999999864345999999999999999999999999999999999999999999999874
No 31
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.51 E-value=3.2e-07 Score=71.06 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=63.3
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
-.+.||.+.|.|+||+.-- ..||+.+|...|..+.+-|+..|...|...|.+.+|++|+++||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4589999999999999743 24999999999999999999999999999999999999999999999974
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.50 E-value=3.5e-07 Score=70.64 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=63.3
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 4589999999999999743 24999999999999999999999999999999999999999999999974
No 33
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.49 E-value=4.3e-07 Score=69.35 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=63.6
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
..+.||.+.|.|+||+.-- ..||+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|+..
T Consensus 19 agLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 3589999999999999853 35999999999999999999999999999999999999999999999974
No 34
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.47 E-value=7.3e-07 Score=62.11 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=56.4
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 36 ANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 36 A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
..|.||+|+..- .+++.++...|.+.+..|+.-|..+|...|.+.|||||+.+||..|++.
T Consensus 5 ~~i~~iLk~~G~--~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELNV--QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTTC--CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 358999999863 4899999999999999999999999999999999999999999999874
No 35
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.43 E-value=6.3e-07 Score=70.94 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=63.3
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 29 ~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
..+.||.+.|.|+||+.-- ..||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++.
T Consensus 41 agLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 3578999999999999843 24999999999999999999999999999999999999999999999874
No 36
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=3.9e-07 Score=69.94 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcc
Q 030812 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (171)
Q Consensus 51 rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dy 104 (171)
|||.|+.+.+.+..++|+.-|...|...|++.+||||+++||..||+..|-.-|
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 344444444444444555555568899999999999999999999999886443
No 37
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.35 E-value=1.3e-06 Score=67.31 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=59.2
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 36 ANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 36 A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
.-|+|++|++-| +..||.+|...|+..+..+..-|+.||...|..++|+||+.+||..|++-|=
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhC
Confidence 458999999998 5789999999999999999999999999999999999999999999997543
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.31 E-value=1.7e-06 Score=66.94 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=59.0
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 37 NISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 37 ~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
-|+|++|++-| +..||.+|...|+..+..+..-|+.||...+..++|+||+.+||..|++-|=
T Consensus 41 YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 103 (126)
T 1tzy_B 41 YVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLL 103 (126)
T ss_dssp HHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred HHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 59999999998 5789999999999999999999999999999999999999999999997553
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.29 E-value=2e-06 Score=69.91 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=63.3
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 30 d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
.+.||.+.|.|+||+.-....||+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|+..
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 589999999999999743235999999999999999999999999999999999999999999999874
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=3.9e-06 Score=70.73 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=63.7
Q ss_pred cccCchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 30 DRYLPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 30 d~~LP~A~V~RImK~~LP~------~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
.+.+|+.+..|++++...+ +.+++.+|..|||++++.|+.-|...++-+|.+.||.||.+.|+..|..--|
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 4789999999999998754 5799999999999999999999999999999999999999999999987554
No 41
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.9e-06 Score=72.59 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=52.7
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 40 RIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 40 RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
||++... .-|||.++.+.+.+..++|+.-|...|..+|++.+||||+++||..||+.+|
T Consensus 169 RlaRrgG--VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 169 EDGDKGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTSCCTT--CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHhhcCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 5555443 3489999999999999999999999999999999999999999999999764
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.02 E-value=1.8e-05 Score=64.27 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=58.8
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 36 ANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 36 A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
.-|+|++|+.-| +..||+||...|...+..+..-|+.+|...+...+|+||+.+||..|++-+
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 358999999998 578999999999999999999999999999999999999999999999743
No 43
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.95 E-value=4.9e-05 Score=54.95 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=62.7
Q ss_pred cccCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 30 DRYLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 30 d~~LP~A~V~RImK~~LP-~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
+..+|..+|.||++.... +..||++||..++.+....||..-...|...++.++..+|..+|+-+.+-.|
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 467999999999998886 5789999999999999999999999999999998888899999998877544
No 44
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.92 E-value=5.6e-05 Score=54.20 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=62.7
Q ss_pred CcccccCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 27 REQDRYLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 27 ~~~d~~LP~A~V~RImK~~LP-~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
.+.+..+|...|.||++.... +..||++||..++.+....||..-...|...++.++-..|..+|+-+.+-.|
T Consensus 3 ~~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 3 EEREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp ----CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 345678999999999999987 4779999999999999999999999999999988888999999998876543
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.76 E-value=0.00016 Score=51.27 Aligned_cols=67 Identities=15% Similarity=0.322 Sum_probs=62.6
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 31 ~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
.-|++..+..++++.-| +..+..|+.++|.+.|.+||.-++..|-..|++-+-.||...||...|++
T Consensus 4 ~vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp CSSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 35789999999999977 78999999999999999999999999999999999999999999998874
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.50 E-value=0.00051 Score=49.86 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=60.8
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccChhhHHHHHHhcC
Q 030812 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEK-RKTINGDDLLWAMATLG 100 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~k-RKTI~~eDVl~AL~~Lg 100 (171)
.||++.|.|||...+ +..++.+...+|.-.+.+||-.|..+|.+++.+.+ +.-|.+.||-.|...|.
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 599999999999998 46899999999999999999999999999998776 55899999999988764
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0032 Score=45.88 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=39.7
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030812 33 LPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKC 79 (171)
Q Consensus 33 LP~A~V~RImK~~LP~-~~rISkDA~~al~~caseFI~~LtseA~~~~ 79 (171)
||+.+|.||++....+ +.||++||..++++....||..-...|.+..
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~k 49 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSH 49 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999987764 7899999999999999999887666665443
No 48
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0067 Score=46.35 Aligned_cols=87 Identities=11% Similarity=0.138 Sum_probs=59.7
Q ss_pred cCchhHHHHHHHhhCC---C---CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccChhhHHHHHHhcCCC
Q 030812 32 YLPIANISRIMKKALP---A---NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEK---RKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP---~---~~rISkDA~~al~~caseFI~~LtseA~~~~~~~k---RKTI~~eDVl~AL~~LgF~ 102 (171)
.+|+.+..|++++... . +.+++.+|..+||++++.|+--|...+|-.|.+.. =|-|+.+ +...+.. -+.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-iy~e~r~-vl~ 78 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL-IYEEVRA-VLK 78 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-HHHHHHH-HHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH-HHHHHHH-HHH
Confidence 3677778888877542 2 67999999999999999999999999998887663 3456653 5444432 123
Q ss_pred cchHHHHHHHHHHHHHhh
Q 030812 103 DYIDPLKAYLMRYREMEG 120 (171)
Q Consensus 103 dyv~~Lk~~L~~yre~~~ 120 (171)
+|.+.+-...-.|-+..+
T Consensus 79 ~~l~~i~rdav~yaehA~ 96 (121)
T 2ly8_A 79 SFLESVIRDSVTYTEHAK 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 555555555555655544
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.79 E-value=0.35 Score=39.82 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=50.2
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 33 LPIANISRIMKKALPA-NGKIAKDAKDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 33 LP~A~V~RImK~~LP~-~~rISkDA~~al~~cas----eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
++...+..|++..+.. +..++.++.+.|.+.+. -.+..+...|...|...++++|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4566677777765542 45799999999988776 244455566777888889999999999999986
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=87.16 E-value=2 Score=41.99 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=52.7
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 30 d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
.+.+|...|.|++|.... .||+..|..-+.-..+-....|.-.|...|+..+++.|+++||..|+..
T Consensus 102 ~l~~pv~~~~~~l~~~~~--~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEVLG--YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCSSCHHHHHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CccccHHHHHHHhhcccc--cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 478999999999977764 4999888777776555444555555667778889999999999999863
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.36 E-value=1.2 Score=38.72 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=50.0
Q ss_pred cCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 32 YLPIANISRIMKKALP-ANGKIAKDAKDTVQECV-S---EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP-~~~rISkDA~~al~~ca-s---eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
.++...+..+++..+. .+..++.++...+.+.+ . .....|...|...|..+++.+|+.+||..|+.-
T Consensus 365 ~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 365 LYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 3455667777765543 24579999998888876 2 245556677888999999999999999999865
No 52
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.45 E-value=3.9 Score=33.26 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=54.1
Q ss_pred CchhHHHHHHHhhCCC---CCcccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030812 33 LPIANISRIMKKALPA---NGKIAKDAKDTVQECV------------SEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (171)
Q Consensus 33 LP~A~V~RImK~~LP~---~~rISkDA~~al~~ca------------seFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (171)
|....+..+++..+.. ...++.++.+.+.+.+ --++..+...|...|..+++.+|+.+||..|+.
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3445667777665532 2479999999888877 234455556777888888889999999999999
Q ss_pred hcCCCcchHHH
Q 030812 98 TLGFEDYIDPL 108 (171)
Q Consensus 98 ~LgF~dyv~~L 108 (171)
.+....+...+
T Consensus 273 ~~~~~~~~~~l 283 (389)
T 1fnn_A 273 EVLFGISEEVL 283 (389)
T ss_dssp HHSCCCCHHHH
T ss_pred HHhhhhHHHHH
Confidence 87665544433
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.90 E-value=1.5 Score=35.50 Aligned_cols=66 Identities=9% Similarity=0.131 Sum_probs=50.5
Q ss_pred hhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 35 IANISRIMKKALP---ANGKIAKDAKDTVQECVS------EFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 35 ~A~V~RImK~~LP---~~~rISkDA~~al~~cas------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
...+..|++..+. ....++.++.+.+.+.+. -++.-+...|...|..+++.+|+.+||..|++.+.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 5667777766543 145799999998888776 45556666778888888899999999999998764
No 54
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=81.91 E-value=3.7 Score=29.63 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHH
Q 030812 52 IAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAM 96 (171)
Q Consensus 52 ISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (171)
++++++++|+. |...|.+.+...|.++|++.||
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHH
Confidence 56667777764 7788999999999999999998
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=80.08 E-value=1.8 Score=28.75 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 57 KDTVQECVSEF----ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 57 ~~al~~caseF----I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
...|.+.+.-| |..|..+|...|.++++..|+.+|+..||+.+
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 34444444434 66777888888999999999999999999753
No 56
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=79.51 E-value=5.1 Score=28.96 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=32.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 51 rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
+++..++.+|.. |...|...+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 688888888875 78889999999999999999985433
No 57
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.55 E-value=6.7 Score=31.53 Aligned_cols=74 Identities=8% Similarity=0.093 Sum_probs=52.0
Q ss_pred CchhHHHHHHHhhCCC---CCcccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCc
Q 030812 33 LPIANISRIMKKALPA---NGKIAKDAKDTVQECVS------EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFED 103 (171)
Q Consensus 33 LP~A~V~RImK~~LP~---~~rISkDA~~al~~cas------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~d 103 (171)
|....+..|++..+.. ...++.++...+.+.+. .++.-+...|...+..+++.+|+.+||..|++.+....
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 4455677777664321 35789999888887775 23444666778888888899999999999998775443
Q ss_pred chH
Q 030812 104 YID 106 (171)
Q Consensus 104 yv~ 106 (171)
+..
T Consensus 277 ~~~ 279 (386)
T 2qby_A 277 VRD 279 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 58
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=77.22 E-value=13 Score=33.54 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=39.2
Q ss_pred CcccHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 50 GKIAKDAKDTVQECVS-------------EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 50 ~rISkDA~~al~~cas-------------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
..++.+|...|.+.+. .-+.-|...|...|..+++.+|+.+||.+|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4799999999888653 234445567888999999999999999999964
No 59
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=76.62 E-value=3.4 Score=30.38 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 51 rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
+++..++.+|+. |...|...+...|.++|++.||=+-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 688888888875 7888999999999999999998653
No 60
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=76.54 E-value=4 Score=29.67 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=32.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 51 rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
+++..++++|+. |...|.+.+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 688888888875 78889999999999999999985433
No 61
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=72.51 E-value=4.1 Score=27.42 Aligned_cols=30 Identities=33% Similarity=0.216 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 71 ITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 71 LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
|..+|...|.++++..|+.+|+..|++..-
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 344566677788889999999999998763
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=72.25 E-value=19 Score=29.01 Aligned_cols=51 Identities=12% Similarity=0.022 Sum_probs=35.8
Q ss_pred CCcccHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 49 NGKIAKDAKDTVQECVSEF-----------------------ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 49 ~~rISkDA~~al~~caseF-----------------------I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
++.|+.++.+.+.+.+... ...+...|...|.-.+|..|+.+||..|+...
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4568888888877655321 12334456667777899999999999998753
No 63
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=71.97 E-value=4.2 Score=27.88 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCC
Q 030812 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (171)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (171)
|.-|..+|.-.|.+.++..|+.+|+..|++.+-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 5566667777888888999999999999997644
No 64
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=71.59 E-value=7.6 Score=28.44 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 51 rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
+++..++.+|.. |...|...+...|.++|++.||=.-+
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 688999988885 77889999999999999999986543
No 65
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=71.55 E-value=3.6 Score=27.46 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
|..|..+|...|.+..+..|+.+|+..|++..-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 445666788888888899999999999998753
No 66
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=69.78 E-value=4.6 Score=27.79 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
|.-|..+|...|.++.+..|+.+|+..|++..
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34456678788888889999999999999753
No 67
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.06 E-value=14 Score=29.59 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=39.4
Q ss_pred CCcccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 49 NGKIAKDAKDTVQECVSE-------FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 49 ~~rISkDA~~al~~case-------FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
...|++++.+.|.+.+.. -+..+...|...|..++|.+|+.+||..|+..+
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 458999999999887653 344455567777888899999999999998754
No 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.19 E-value=11 Score=30.70 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=45.5
Q ss_pred CchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH---H---HHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 33 LPIANISRIMKKALP---ANGKIAKDAKDTVQECVS---E---FISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 33 LP~A~V~RImK~~LP---~~~rISkDA~~al~~cas---e---FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
|....+..|++..+. ....++.++.+.+.+.+. - .+.-+...|...|. ++.+|+.+||..|++.+.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 445667777776442 135799999888888776 1 23334445666665 667999999999998764
No 69
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=64.41 E-value=42 Score=24.99 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=45.0
Q ss_pred CCCcccccCchhHHHHHHHhhCCC---CCcccHHHHHHHHHH----------HHHHHHHHH-----HHHHHHHHhcCCCc
Q 030812 25 GVREQDRYLPIANISRIMKKALPA---NGKIAKDAKDTVQEC----------VSEFISFIT-----SEASDKCQKEKRKT 86 (171)
Q Consensus 25 ~~~~~d~~LP~A~V~RImK~~LP~---~~rISkDA~~al~~c----------aseFI~~Lt-----seA~~~~~~~kRKT 86 (171)
+....+-.|...-+..+++...+. ...++.+....|-+. -.+|+..+. ..|....- ++.-+
T Consensus 13 ~~~~~dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~~l~~aF~~fD-d~~G~ 91 (174)
T 2i7a_A 13 GLVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQ-TSPGV 91 (174)
T ss_dssp CSCC-CCCEEHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCSSCSSEECHHHHHHHHHHHHHHHHHHHHHC-SBTTB
T ss_pred ccCCCCCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhc-CCCCc
Confidence 445555566666666666665321 123444333222221 135555443 35666777 77789
Q ss_pred cChhhHHHHHHhc----CCC
Q 030812 87 INGDDLLWAMATL----GFE 102 (171)
Q Consensus 87 I~~eDVl~AL~~L----gF~ 102 (171)
|+.+++..+|..+ |+.
T Consensus 92 I~~~El~~~l~~l~~~~G~~ 111 (174)
T 2i7a_A 92 LLSSDLWKAIENTDFLRGIF 111 (174)
T ss_dssp EEGGGHHHHHHTCGGGTTCC
T ss_pred CCHHHHHHHHHHhHhccCCC
Confidence 9999999999999 875
No 70
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=59.63 E-value=14 Score=27.04 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=31.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 50 ~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
..+|.++..+|.+ |...|+..+...|+.+||+.||=.-+
T Consensus 80 ~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 80 IVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 4588888888775 67788889999999999999996544
No 71
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=58.97 E-value=8.5 Score=29.73 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 51 rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
+++..++++|+. |...|...+...|.++|++.||=+-
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHc
Confidence 578888888875 7788999999999999999998543
No 72
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=58.78 E-value=15 Score=26.49 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=39.8
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030812 33 LPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (171)
Q Consensus 33 LP~A~V~RImK~~LP~-~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (171)
++...+..+++..+.. +..++.++...|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4456666776665432 3468898888887766544444433333334333 6999999999875
No 73
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=57.56 E-value=30 Score=25.11 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=31.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 50 ~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
..+|.++..+|.+ |...|...+...|+.+||+.||-.-+
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 4688888888886 67778888999999999999986443
No 74
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=57.06 E-value=25 Score=27.49 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=49.9
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhH
Q 030812 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92 (171)
Q Consensus 33 LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDV 92 (171)
+|.+.+.|+.+.+.. .-|.|+-..-+...++.=+.-|.-.|...|+.++|.+|...|+
T Consensus 3 m~~~~~e~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAAG--LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHHC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 678889999999985 5677877788888888888888888999999999999999885
No 75
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=56.67 E-value=39 Score=22.18 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=47.1
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCccChhhHHHHHHhc---C
Q 030812 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFIT---------SEASDKCQKEKRKTINGDDLLWAMATL---G 100 (171)
Q Consensus 33 LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~Lt---------seA~~~~~~~kRKTI~~eDVl~AL~~L---g 100 (171)
+....|.+|++..-. +..|+-+- |+.++. ..+....-.++.-.|+.+++..+|..+ |
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~e----------F~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g 74 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYKR----------FFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHG 74 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHHH----------HHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCC-CCcCcHHH----------HHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcC
Confidence 566778888887654 55666432 333221 245566667778899999999999998 6
Q ss_pred CCcchHHHHHHHHHH
Q 030812 101 FEDYIDPLKAYLMRY 115 (171)
Q Consensus 101 F~dyv~~Lk~~L~~y 115 (171)
..--.+.++..+..+
T Consensus 75 ~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 75 RDLNDTETKALLAAG 89 (109)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 654455555555443
No 76
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=55.13 E-value=24 Score=29.00 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=45.7
Q ss_pred hHHHHHHHhhCC-CCCcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCc
Q 030812 36 ANISRIMKKALP-ANGKIAKDAKDTVQECVS---EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFED 103 (171)
Q Consensus 36 A~V~RImK~~LP-~~~rISkDA~~al~~cas---eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~d 103 (171)
..+..|+++... .+..++.|+...|.+.+. -.+.-+...+.+.|...++..|+.++|..|++.++++.
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 456666654431 145688888887766432 23333445566777777788999999999999887653
No 77
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=54.94 E-value=34 Score=24.30 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=29.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 50 ~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
..+|..+..+|++ |...+...+...|+.+||+.||=.
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHh
Confidence 3567777777765 677888888999999999999954
No 78
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=54.00 E-value=19 Score=28.85 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=53.8
Q ss_pred Ccccc--cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhH
Q 030812 27 REQDR--YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92 (171)
Q Consensus 27 ~~~d~--~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDV 92 (171)
.+++. -+|.+.+.||.+.+.. .-|.|+-..-+...++.=+.-|.-.|...|+.++|.+|...|+
T Consensus 19 ~~~~Mm~vmg~~kferlFR~aag--LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 19 KIETMLRPKGFDKLDHYFRTELD--IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp --CCTTSCTTHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHhcCChHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 34445 7899999999999985 6677888888888888888888888999999999999999885
No 79
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=53.84 E-value=21 Score=27.93 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 67 FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
-|.-|...|...|...++.+|+.+||..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 455677788888889999999999999998754
No 80
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=51.50 E-value=38 Score=25.00 Aligned_cols=61 Identities=2% Similarity=-0.001 Sum_probs=37.4
Q ss_pred hhHHHHHHHhhCC-CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030812 35 IANISRIMKKALP-ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (171)
Q Consensus 35 ~A~V~RImK~~LP-~~~rISkDA~~al~~cas----eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (171)
...+.++++..+. .+..++.++.+.|.+.+. +.+..|. .+...+..++ ++|+.+||..+|+
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~-~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLD-RLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHhC-CCCcHHHHHHHhh
Confidence 3455556655442 245789999888877653 3333333 3344454444 4699999998875
No 81
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=49.51 E-value=23 Score=25.68 Aligned_cols=63 Identities=8% Similarity=0.022 Sum_probs=40.6
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHH
Q 030812 33 LPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAM 96 (171)
Q Consensus 33 LP~A~V~RImK~~LP~-~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (171)
|....+..+++..+.. +..++.++...|.+.+.-...++-......+ ...+++|+.+||.+++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHh
Confidence 4456667777655532 4578899888888777655555544433333 3345689999998875
No 82
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=48.66 E-value=1e+02 Score=25.65 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=45.4
Q ss_pred chhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCccChhhHHHHH
Q 030812 34 PIANISRIMKKALPA-NGKIAKDAKDTVQECVSE----FISFITSEASDKCQKE------------KRKTINGDDLLWAM 96 (171)
Q Consensus 34 P~A~V~RImK~~LP~-~~rISkDA~~al~~case----FI~~LtseA~~~~~~~------------kRKTI~~eDVl~AL 96 (171)
+......|++..+.. +..++.++...|.+.+.- -|..|...|...+.++ ....|+.+|+..|+
T Consensus 283 ~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al 362 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESL 362 (389)
T ss_dssp CHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHH
Confidence 345556666665543 346888888877776543 4455666666555554 45689999999999
Q ss_pred HhcCCC
Q 030812 97 ATLGFE 102 (171)
Q Consensus 97 ~~LgF~ 102 (171)
+...-.
T Consensus 363 ~~~~~s 368 (389)
T 3vfd_A 363 KKIKRS 368 (389)
T ss_dssp HHCCCS
T ss_pred HHcCCC
Confidence 876543
No 83
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=46.62 E-value=17 Score=24.52 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=37.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 49 NGKIAKDAKDTVQECVSEFISFIT-SEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 49 ~~rISkDA~~al~~caseFI~~Lt-seA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
.+..+.||...|.+. =-||.=-. ...-..|...|...||.+.+..|-+.++
T Consensus 3 ~l~Wt~EAe~~LkkI-P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGKV-PFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 356888888888873 34544333 3444788999999999999999977654
No 84
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=46.49 E-value=15 Score=24.50 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=18.6
Q ss_pred cChhhHHHHHHhcCCCcchHHH
Q 030812 87 INGDDLLWAMATLGFEDYIDPL 108 (171)
Q Consensus 87 I~~eDVl~AL~~LgF~dyv~~L 108 (171)
=+++||..-|+.+||++|++..
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F 26 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRF 26 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 3689999999999999887654
No 85
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=45.61 E-value=29 Score=24.94 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=28.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 50 ~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
..+|..+..+|.. |...+..-+...|+.+|++.||=.
T Consensus 78 ~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 78 IHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 3567776666654 677777788899999999999854
No 86
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=44.83 E-value=36 Score=29.68 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHH
Q 030812 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPL 108 (171)
Q Consensus 51 rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~L 108 (171)
+++..++.+|.. |...|...+...|..+|+|.||=.-+=......|
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 688888888875 7788999999999999999999765433333333
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=44.45 E-value=72 Score=25.89 Aligned_cols=68 Identities=7% Similarity=0.034 Sum_probs=48.7
Q ss_pred CchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 33 LPIANISRIMKKALP---ANGKIAKDAKDTVQECVS---------EFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 33 LP~A~V~RImK~~LP---~~~rISkDA~~al~~cas---------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
|....+..|++..+. ....++.++...+.+.+. -++..+...|...+...++.+|+.+||..++..+.
T Consensus 215 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 445567777754331 123588888888887776 36667777787888888889999999999987764
No 88
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=43.33 E-value=18 Score=24.43 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=20.0
Q ss_pred ccChhhHHHHHHhcCCCcchHHHH
Q 030812 86 TINGDDLLWAMATLGFEDYIDPLK 109 (171)
Q Consensus 86 TI~~eDVl~AL~~LgF~dyv~~Lk 109 (171)
.-+++||..-|+.+||++|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999987544
No 89
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.08 E-value=22 Score=31.88 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=41.8
Q ss_pred cCchh-HHHHHHHhhCCCCCcccHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 32 YLPIA-NISRIMKKALPANGKIAKDA-KDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 32 ~LP~A-~V~RImK~~LP~~~rISkDA-~~al~~cas----eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
.||-. .-..|++-.+. ...++.|. .+.|.+.+. -=|.-|..+|.-.|.+++|..|+.+|+..|++.
T Consensus 351 ~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 351 ENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 45532 23345554443 34455443 344444332 236677788888999999999999999999874
No 90
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.61 E-value=23 Score=31.44 Aligned_cols=31 Identities=32% Similarity=0.347 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 68 ISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
|..|..+|.-.|.+++|..|+.+|+..|++.
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5667778888888999999999999999875
No 91
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=41.27 E-value=32 Score=26.63 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=38.7
Q ss_pred hHHHHHHHhhCCCCCcccHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 36 ANISRIMKKALPANGKIAKDA-KDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 36 A~V~RImK~~LP~~~rISkDA-~~al~~cas----eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
.....|++..+. ...++.++ ...+.+... .-|..+..+|...|...++++|+.+||..|++..-
T Consensus 185 ~~r~~il~~~~~-~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 185 RGREQILKVHMR-RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-cCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 344456665543 23444443 233333211 12344556777788888899999999999998753
No 92
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=40.90 E-value=36 Score=26.11 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=31.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccChhhHHHHHHh
Q 030812 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQ-KEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 50 ~rISkDA~~al~~caseFI~~LtseA~~~~~-~~kRKTI~~eDVl~AL~~ 98 (171)
..+|.++..+|++ |...++ +-+...|+.+||+.||-.
T Consensus 97 ~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 97 PAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp CEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 4588888888886 788888 899999999999999854
No 93
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.56 E-value=23 Score=32.09 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 68 ISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
|.-|..+|.-.|.+++|+.|+.+|++.|+++
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 5667778888899999999999999999975
No 94
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.07 E-value=24 Score=31.33 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 67 FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
-|..|..+|.-.|.+++++.|+.+|++.|++..
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 356677788888889999999999999999754
No 95
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.02 E-value=27 Score=30.83 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 67 FISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
=|.-|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 35677778888899999999999999999875
No 96
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=39.81 E-value=1e+02 Score=22.09 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=37.6
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCC
Q 030812 38 ISRIMKKALPANGKIAKDAKDTVQECVS---EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 38 V~RImK~~LP~~~rISkDA~~al~~cas---eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (171)
|.+-++.-.. ..++.+.+...+....+ +-+..| .++....-.++.-+|+.+++..+|+.+|+.
T Consensus 6 ~~~~l~~~~~-~~~l~~~~l~~~~~~l~~~~~~~~~l-~~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 6 VLNNMKSYMK-HSNIRNIIINIMAHELSVINNHIKYI-NELFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp HHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH-HhHHHHHHHHHHHHHccCCHHHHHHH-HHHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 3344444433 23566655555544332 222222 234455566777899999999999999986
No 97
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=39.68 E-value=18 Score=24.27 Aligned_cols=49 Identities=8% Similarity=0.079 Sum_probs=34.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 50 GKIAKDAKDTVQECVSEFISFIT-SEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 50 ~rISkDA~~al~~caseFI~~Lt-seA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
+..+.||...|.+. =-||.=-. ...-..|...|...||.+.+..|-+.+
T Consensus 3 l~Wt~EAe~~LkkI-P~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 3 LRWTSEAKTKLKNI-PFFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp CEECHHHHHHHHTS-CGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 45778888887773 23443333 344478899999999999999886654
No 98
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=39.39 E-value=42 Score=26.53 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=45.3
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCC
Q 030812 33 LPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEF---ISFITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 33 LP~A~V~RImK~~LP~-~~rISkDA~~al~~caseF---I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (171)
++...+..+++..+.. +..++.++...|.+.+.-. +..+...+...|...+..+|+.+|+..+++.+...
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 4556667777665532 4579999988888765222 22233333444555567789999999999877653
No 99
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=39.03 E-value=90 Score=21.24 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHH
Q 030812 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (171)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~ 113 (171)
+....-.++.-.|+.+++..+|..+|..--.+.+...+.
T Consensus 101 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 139 (161)
T 3fwb_A 101 AFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIE 139 (161)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445555667778999999999999987544444444443
No 100
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=38.58 E-value=9.7 Score=34.73 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=43.3
Q ss_pred HhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC--hhhHHHHHHh-cCCC
Q 030812 43 KKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTIN--GDDLLWAMAT-LGFE 102 (171)
Q Consensus 43 K~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~--~eDVl~AL~~-LgF~ 102 (171)
|+++.+.--|-+|.+.||++||...=.||.......-..++++++. -.+|..+|.. ++-+
T Consensus 427 Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (530)
T 2zbk_B 427 KESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLATFLASG 489 (530)
T ss_dssp CSCBCCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCS
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444444468899999999999999999988666555555555554 4678888876 4433
No 101
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=38.27 E-value=40 Score=24.00 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=26.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030812 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (171)
Q Consensus 51 rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (171)
.+|..+..+|.+ |...+...+...|+.+||+.||-
T Consensus 82 ~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 82 QPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 356655555554 67777777888999999999986
No 102
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.00 E-value=24 Score=31.25 Aligned_cols=31 Identities=35% Similarity=0.292 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 68 ISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
|.-|..+|.-.|.+++|..|+.+|+..|+..
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 6677788888899999999999999999864
No 103
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=37.63 E-value=61 Score=18.89 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=24.2
Q ss_pred HHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHH
Q 030812 76 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (171)
Q Consensus 76 ~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~ 113 (171)
....-.++.-.|+.+++..+|..+|..--...+...+.
T Consensus 7 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 44 (67)
T 1tiz_A 7 FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFE 44 (67)
T ss_dssp HHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34444566678888898888888886543344444333
No 104
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=37.53 E-value=15 Score=26.22 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.4
Q ss_pred cChhhHHHHHHhcCCCcchHHH
Q 030812 87 INGDDLLWAMATLGFEDYIDPL 108 (171)
Q Consensus 87 I~~eDVl~AL~~LgF~dyv~~L 108 (171)
-+.+||..-|+.+||.+|++..
T Consensus 20 Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 20 WSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp CCTTHHHHHHHHTTCTTTTTTT
T ss_pred CCHHHHHHHHHHcCCHHHHHHH
Confidence 4899999999999999998765
No 105
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=35.85 E-value=1e+02 Score=21.01 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHHH
Q 030812 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (171)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~~ 114 (171)
.|....-.++.-.|+.+++..+|..+|..-=.+.+...+..
T Consensus 87 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 127 (148)
T 1exr_A 87 EAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIRE 127 (148)
T ss_dssp HHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 35556666777789999999999999864333444444443
No 106
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=35.40 E-value=91 Score=20.26 Aligned_cols=81 Identities=16% Similarity=0.035 Sum_probs=45.7
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc---CCCcchHHH
Q 030812 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPL 108 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L---gF~dyv~~L 108 (171)
.+....|.+|++..- .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--.+.+
T Consensus 6 ~~~~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 83 (109)
T 1bu3_A 6 ILADADVAAALKACE-AADSFNYKAFFAKVGLTAKSAD-DIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAET 83 (109)
T ss_dssp SSCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCcCcHHHHHHHHHcChhhHH-HHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHH
Confidence 456677888888754 4556765322111100000000 11245556667778899999999999998 554334445
Q ss_pred HHHHHH
Q 030812 109 KAYLMR 114 (171)
Q Consensus 109 k~~L~~ 114 (171)
+..+..
T Consensus 84 ~~~~~~ 89 (109)
T 1bu3_A 84 KAFLKA 89 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 107
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=34.90 E-value=95 Score=22.88 Aligned_cols=78 Identities=9% Similarity=0.147 Sum_probs=40.6
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHH
Q 030812 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEF-ISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLK 109 (171)
Q Consensus 31 ~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseF-I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk 109 (171)
..|....+.|+-+ -. ...++.+.+...|.+..+.- +..| .++....-.++.-+|+.+++..+|..+|+.--...+.
T Consensus 20 ~~l~~~~~~~l~~-f~-~~~~lk~~~l~~i~~~l~~~e~~~l-~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~ 96 (197)
T 3pm8_A 20 VELSSTLLKNLKN-FK-KENELKKIALTIIAKHLCDVEINNL-RNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIH 96 (197)
T ss_dssp CCCCTTHHHHHHH-TT-TSCHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHHH
T ss_pred CCCCHHHHHHHHH-HH-HccHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHH
Confidence 3455555555543 22 23356665555544432221 2222 2334455566777999999999999998753333333
Q ss_pred HH
Q 030812 110 AY 111 (171)
Q Consensus 110 ~~ 111 (171)
..
T Consensus 97 ~l 98 (197)
T 3pm8_A 97 QV 98 (197)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 108
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=34.70 E-value=1.1e+02 Score=21.13 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHHH
Q 030812 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (171)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~~ 114 (171)
.|....-.++.-+|+.+++..+|..+|..--...+...+..
T Consensus 87 ~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~ 127 (148)
T 2lmt_A 87 EAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIRE 127 (148)
T ss_dssp HHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 46667777888899999999999999987655566555543
No 109
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=34.55 E-value=80 Score=21.75 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHH
Q 030812 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (171)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~ 113 (171)
.|....-.++.-+|+.+++..+|..+|..-=.+.+...+.
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4556666777789999999999999986433344444444
No 110
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=34.09 E-value=27 Score=24.24 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=19.7
Q ss_pred ccChhhHHHHHHhc-CCCcchHHHH
Q 030812 86 TINGDDLLWAMATL-GFEDYIDPLK 109 (171)
Q Consensus 86 TI~~eDVl~AL~~L-gF~dyv~~Lk 109 (171)
.-+.+||..-|+.+ ||++|++..+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 45789999999999 9998876544
No 111
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=33.98 E-value=50 Score=21.43 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=24.9
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHH
Q 030812 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEF 67 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseF 67 (171)
.+..++|.|++...- ....|+.|.++-|.+++.++
T Consensus 11 GVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 467888999887532 11268888888888877665
No 112
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=33.83 E-value=62 Score=29.75 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=32.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 51 rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
+++..++.+|.. |...|...+...|.++|+|.||=.-+
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 688888888875 77889999999999999999996554
No 113
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=33.69 E-value=98 Score=20.10 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=45.8
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCccChhhHHHHHHhc---
Q 030812 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFI---------TSEASDKCQKEKRKTINGDDLLWAMATL--- 99 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~L---------tseA~~~~~~~kRKTI~~eDVl~AL~~L--- 99 (171)
.+....|.++++..= .+..|+-+ +|+.++ ...+....-.++.-.|+.+++..+|..+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 74 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYK----------SFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSS 74 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTT
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcc
Confidence 456677888888764 45566653 233222 2245556667777899999999999999
Q ss_pred CCCcchHHHHHHHHH
Q 030812 100 GFEDYIDPLKAYLMR 114 (171)
Q Consensus 100 gF~dyv~~Lk~~L~~ 114 (171)
|..--.+.++..+..
T Consensus 75 ~~~~~~~~~~~~~~~ 89 (109)
T 3fs7_A 75 ARVLTSAETKAFLAA 89 (109)
T ss_dssp SCCCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHH
Confidence 554444455544443
No 114
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=33.44 E-value=86 Score=19.37 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=30.1
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 030812 38 ISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASD 77 (171)
Q Consensus 38 V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~ 77 (171)
|..+|-.- .+...-..|+..+|.+.+.+||..++.+|.+
T Consensus 6 i~~mMy~f-GD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGF-GDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHT-TSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455433 3455678899999999999999999998865
No 115
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=32.76 E-value=80 Score=20.49 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=42.6
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc---CCCcchHHHH
Q 030812 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLK 109 (171)
Q Consensus 33 LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L---gF~dyv~~Lk 109 (171)
+....|.++++..= .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--.+.++
T Consensus 6 ~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 83 (109)
T 1rwy_A 6 LSAEDIKKAIGAFT-AADSFDHKKFFQMVGLKKKSAD-DVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETK 83 (109)
T ss_dssp SCHHHHHHHHHTTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHH
T ss_pred CCHHHHHHHHHHcC-CCCcEeHHHHHHHHhcCcchHH-HHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHH
Confidence 44566777777653 4556664322211100000000 11345566667777899999999999998 5443334444
Q ss_pred HHHH
Q 030812 110 AYLM 113 (171)
Q Consensus 110 ~~L~ 113 (171)
..+.
T Consensus 84 ~~~~ 87 (109)
T 1rwy_A 84 TLMA 87 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 116
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=32.67 E-value=82 Score=20.62 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=25.0
Q ss_pred HHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHH
Q 030812 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 112 (171)
Q Consensus 77 ~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L 112 (171)
...-.++.-+|+.+++..+|..+|+.-=.+.++..+
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 71 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 71 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344566777899999999999998753334444433
No 117
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=32.36 E-value=71 Score=20.80 Aligned_cols=71 Identities=15% Similarity=0.300 Sum_probs=42.7
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCccChhhHHHHHHhc---C
Q 030812 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFI---------TSEASDKCQKEKRKTINGDDLLWAMATL---G 100 (171)
Q Consensus 33 LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~L---------tseA~~~~~~~kRKTI~~eDVl~AL~~L---g 100 (171)
+...-|.++++..- .+..|+-+ +|+.++ ...+....-.++.-+|+.+++..+|..+ |
T Consensus 7 ~t~~e~~~~~~~~d-~~g~i~~~----------ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g 75 (110)
T 1pva_A 7 LKADDIKKALDAVK-AEGSFNHK----------KFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADG 75 (110)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTC
T ss_pred CCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcC
Confidence 45566777777653 34456543 222222 1245566667778899999999999998 5
Q ss_pred CCcchHHHHHHHHH
Q 030812 101 FEDYIDPLKAYLMR 114 (171)
Q Consensus 101 F~dyv~~Lk~~L~~ 114 (171)
..--.+.++..+..
T Consensus 76 ~~~~~~~~~~~~~~ 89 (110)
T 1pva_A 76 RDLTDAETKAFLKA 89 (110)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44333444444443
No 118
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.14 E-value=70 Score=27.91 Aligned_cols=67 Identities=10% Similarity=0.233 Sum_probs=44.8
Q ss_pred CchhHHHHHHHhhCCC--------CCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc--CCCccChhhHHHHHHh
Q 030812 33 LPIANISRIMKKALPA--------NGKIAKDAKDTVQECVS----EFISFITSEASDKCQKE--KRKTINGDDLLWAMAT 98 (171)
Q Consensus 33 LP~A~V~RImK~~LP~--------~~rISkDA~~al~~cas----eFI~~LtseA~~~~~~~--kRKTI~~eDVl~AL~~ 98 (171)
|+...+..|++..+.. ...|+.++.+.|.+.+. ..++.|- .|...|... ++.+|+.+||..++..
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le-~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE-MMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH-HHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccccCCCCccCHHHHHHHHhh
Confidence 5667777777776642 35699999999988653 3333333 233344322 5678999999999986
Q ss_pred cC
Q 030812 99 LG 100 (171)
Q Consensus 99 Lg 100 (171)
.-
T Consensus 244 ~~ 245 (447)
T 3pvs_A 244 RS 245 (447)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 119
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=31.87 E-value=16 Score=34.05 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=45.9
Q ss_pred CcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC--hhhHHHHHHh
Q 030812 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTIN--GDDLLWAMAT 98 (171)
Q Consensus 27 ~~~d~~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~--~eDVl~AL~~ 98 (171)
-.-...+|..... |+++.+.--|-+|.+.||++||...=.||.......-.+++++++. -.+|..+|..
T Consensus 422 ~~~st~vp~~~~~---ke~ia~~~ei~~ei~~a~~~~~r~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 492 (621)
T 2q2e_B 422 HVASINVPFTSES---KDAIADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAH 492 (621)
T ss_dssp EEECSSCCBSSSS---SSSBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTT
T ss_pred EEeecCCCcCCcc---hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455554442 5556544479999999999999999999998776665555555554 3455555543
No 120
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=31.76 E-value=42 Score=26.92 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=46.3
Q ss_pred chhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCC
Q 030812 34 PIANISRIMKKALPA-NGKIAKDAKDTVQECVSE---FISFITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 34 P~A~V~RImK~~LP~-~~rISkDA~~al~~case---FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (171)
+...+..|++..+.. +..++.++...|.+.+.- .+..+...+...|...++.+|+.+||..++..+++.
T Consensus 185 ~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 355556666655432 356899998888874322 222333445567777778899999999999987764
No 121
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=31.39 E-value=46 Score=22.73 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHHH
Q 030812 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (171)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~~ 114 (171)
|....-.++.-+|+.+++..+|+.+|+.-=...++..+..
T Consensus 41 ~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 41 AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 5566677888899999999999999985333444444443
No 122
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=31.17 E-value=64 Score=22.51 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCccChhhHHHHHHhcCC
Q 030812 75 ASDKCQKEKRKTINGDDLLWAMATLGF 101 (171)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (171)
|....-.++.-.|+.+++..+|..+|+
T Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 45 GFSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 444455666667888888888888775
No 123
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=30.99 E-value=1.3e+02 Score=23.45 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC------------CCccChhhHHHHHHhcCCCcchHHHH
Q 030812 51 KIAKDAKDTVQECVSE----FISFITSEASDKCQKEK------------RKTINGDDLLWAMATLGFEDYIDPLK 109 (171)
Q Consensus 51 rISkDA~~al~~case----FI~~LtseA~~~~~~~k------------RKTI~~eDVl~AL~~LgF~dyv~~Lk 109 (171)
.++.++...|.+.+.- -|..|..+|...+.++. ...|+.+|+..|++...-.-..+.++
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 4777777777765543 23345555555555443 36899999999998876544444433
No 124
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.48 E-value=2e+02 Score=22.67 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=41.9
Q ss_pred cCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC-CccChhhHHHHHHhcC
Q 030812 32 YLPIANISRIMKKALP-ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKEKR-KTINGDDLLWAMATLG 100 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP-~~~rISkDA~~al~~cas----eFI~~LtseA~~~~~~~kR-KTI~~eDVl~AL~~Lg 100 (171)
.++...+..+++..+. .+..|+.++...|.+.+. ..++.|-..+ ..+.+.++ ++|+.+||..++..+.
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~-~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSAS-KGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTH-HHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCCccCccccHHHHHHHhCCCC
Confidence 3455566666665542 356799999888887643 4444443322 23433333 3899999999887543
No 125
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=30.28 E-value=20 Score=23.42 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=17.9
Q ss_pred cChhhHHHHHHhcCCCcchHHH
Q 030812 87 INGDDLLWAMATLGFEDYIDPL 108 (171)
Q Consensus 87 I~~eDVl~AL~~LgF~dyv~~L 108 (171)
=+.+||..-|+.+||++|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4689999999999988776643
No 126
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=30.23 E-value=1.3e+02 Score=20.51 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=44.7
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHH
Q 030812 33 LPIANISRIMKKALPA-NGKIAKDA-KDTVQECVSEF-ISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLK 109 (171)
Q Consensus 33 LP~A~V~RImK~~LP~-~~rISkDA-~~al~~caseF-I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk 109 (171)
++...|.++++..=.+ +..|+-+- ..++......- ...-...|....-.++.-.|+.+++..+|..+|..-=.+.+.
T Consensus 39 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~ 118 (143)
T 2obh_A 39 PKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQ 118 (143)
T ss_dssp CCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHHhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH
Confidence 4455677777665332 34566532 22222211110 011123455666677777999999999999998653344455
Q ss_pred HHHH
Q 030812 110 AYLM 113 (171)
Q Consensus 110 ~~L~ 113 (171)
..+.
T Consensus 119 ~~~~ 122 (143)
T 2obh_A 119 EMID 122 (143)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 127
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=30.20 E-value=21 Score=27.37 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
|.-|..+|...|..+++.+|+.+||..|+++.
T Consensus 218 l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 218 IANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 44555566667777778899999998888754
No 128
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=29.62 E-value=45 Score=31.32 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030812 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (171)
Q Consensus 51 rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (171)
+++..++.+|.. |...|.+.+...|+++|+|.||=
T Consensus 5 ~~t~~a~~al~~------------A~~~A~~~~h~~i~~eHLLlaLl 39 (854)
T 1qvr_A 5 RWTQAAREALAQ------------AQVLAQRMKHQAIDLPHLWAVLL 39 (854)
T ss_dssp CSCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 688888888875 77889999999999999999984
No 129
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=29.40 E-value=2.9e+02 Score=25.44 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=32.0
Q ss_pred HHHHHHHHH-----HHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHH
Q 030812 65 SEFISFITS-----EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (171)
Q Consensus 65 seFI~~Lts-----eA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~ 113 (171)
.||+.++.. .+....-.++.-+|+.+++..+|..+|+.--.+.++..+.
T Consensus 595 ~EF~~l~~~~~~l~~~F~~~D~d~dG~Is~~El~~~L~~~G~~ls~~~~~~l~~ 648 (714)
T 3bow_A 595 KEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVA 648 (714)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHTTEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455555432 4455666677889999999999999986533334444433
No 130
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=29.34 E-value=1.5e+02 Score=21.10 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=34.8
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHH
Q 030812 47 PANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 112 (171)
Q Consensus 47 P~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L 112 (171)
|...++|++-..-|.+ |....-.++-=+|+.+++..+|+.||+.--...+...+
T Consensus 5 ~~~~~Lt~~qi~elk~------------~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKE------------AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp --CTTCCHHHHHHHHH------------HHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred ccccCCCHHHHHHHHH------------HHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 4456777766555544 33444556666899999999999999875555554443
No 131
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=28.95 E-value=1.2e+02 Score=19.63 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCccChhhHHHHHHhcCCC
Q 030812 75 ASDKCQKEKRKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (171)
+....-.++.-.|+.+++..+|..+|+.
T Consensus 29 ~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 29 EFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 4455566777789999999999998875
No 132
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=28.77 E-value=1.4e+02 Score=27.17 Aligned_cols=27 Identities=44% Similarity=0.706 Sum_probs=21.3
Q ss_pred HhcCCCccChhhHHHHHHhcCCC-cchH
Q 030812 80 QKEKRKTINGDDLLWAMATLGFE-DYID 106 (171)
Q Consensus 80 ~~~kRKTI~~eDVl~AL~~LgF~-dyv~ 106 (171)
+..++++|+++++...-.+.||+ |...
T Consensus 372 ~~~~~~~l~G~~af~LyDTyGfP~dLt~ 399 (465)
T 1yfs_A 372 LEEGRKTLSGKEVFTAYDTYGFPVDLID 399 (465)
T ss_dssp HHTTCCEECHHHHHHHHHTSCCCHHHHH
T ss_pred HhcCCCcCCHHHHHhhhhccCCCHHHHH
Confidence 34466789999999999999997 4443
No 133
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=28.70 E-value=1.7e+02 Score=21.20 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHhcCCC
Q 030812 74 EASDKCQKEKRKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (171)
.+....-.++.-+|+.+++..+|..+|+.
T Consensus 97 ~~F~~~D~d~~G~i~~~e~~~~l~~~g~~ 125 (191)
T 1y1x_A 97 EGFRKRDSSGDGRLDSNEVRAALLSSGYQ 125 (191)
T ss_dssp HHHHHHCTTSSSCBCHHHHHHHHHTTSCC
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHhCCC
Confidence 45555666777789999999999988864
No 134
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=28.04 E-value=1.2e+02 Score=21.79 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHH
Q 030812 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 112 (171)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L 112 (171)
+|....-.++.=+|+.+++..+|..+|..-=-+.+...+
T Consensus 89 ~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~ 127 (159)
T 3i5g_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIF 127 (159)
T ss_dssp HHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 456666677788999999999999999754344444443
No 135
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=28.03 E-value=1.1e+02 Score=19.33 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=25.2
Q ss_pred HHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHH
Q 030812 76 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (171)
Q Consensus 76 ~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~ 113 (171)
....-.++.-.|+.+++..+|..+|+.-=...+...+.
T Consensus 26 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 33445566778999999999999987533344444433
No 136
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=27.27 E-value=99 Score=21.01 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=18.5
Q ss_pred HHhhCC---CCCcccHHHHHHHHHHHHHHHHHHH
Q 030812 42 MKKALP---ANGKIAKDAKDTVQECVSEFISFIT 72 (171)
Q Consensus 42 mK~~LP---~~~rISkDA~~al~~caseFI~~Lt 72 (171)
+|+.+| .+-++|| ..+-+.|..||.+|.
T Consensus 36 LR~~VP~~p~~kKLSK---iEtLr~Ai~YI~~Lq 66 (68)
T 2lfh_A 36 LRELVPGVPRGTQLSQ---VEILQRVIDYILDLQ 66 (68)
T ss_dssp HHHHCCCCCTTCCCCH---HHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCccH---HHHHHHHHHHHHHHH
Confidence 344454 4668886 666667788887774
No 137
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=27.23 E-value=90 Score=20.91 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=26.3
Q ss_pred HHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHHH
Q 030812 76 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (171)
Q Consensus 76 ~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~~ 114 (171)
....-.++.-.|+.+++..+|..+|..--.+.+...+..
T Consensus 82 F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~ 120 (143)
T 3j04_B 82 FACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYRE 120 (143)
T ss_dssp HTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344445667789999999999999865434444444443
No 138
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=27.20 E-value=53 Score=26.37 Aligned_cols=65 Identities=8% Similarity=0.014 Sum_probs=37.1
Q ss_pred cCchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030812 32 YLPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP~-~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (171)
.++...+..+++..+.. +..++.++...|.+.+.--+..+.......+. ....+|+.+||..++.
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~-~~~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLG 242 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH-HTTTCBCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcCCcccHHHHHHHhC
Confidence 35566677777655532 45788998888877654333333332222222 2245688888766654
No 139
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=27.01 E-value=74 Score=26.19 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCC------------------CccChhhHHHHHHhcCC
Q 030812 64 VSEFISFITSEASDKCQKEKR------------------KTINGDDLLWAMATLGF 101 (171)
Q Consensus 64 aseFI~~LtseA~~~~~~~kR------------------KTI~~eDVl~AL~~LgF 101 (171)
...|..-|+-+-.++|..... -.|+.+||+.|++.|.-
T Consensus 88 ~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~~ 143 (233)
T 1u5t_A 88 VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKS 143 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhh
Confidence 368888888888888876532 28999999999987643
No 140
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=26.73 E-value=1.2e+02 Score=19.09 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=12.5
Q ss_pred hcCCCccChhhHHHHHHhcCCC
Q 030812 81 KEKRKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 81 ~~kRKTI~~eDVl~AL~~LgF~ 102 (171)
.++.-.|+.+++..+|..+|+.
T Consensus 20 ~d~~G~i~~~el~~~l~~~g~~ 41 (92)
T 2kn2_A 20 KDQNGYISASELRHVMINLGEK 41 (92)
T ss_dssp TTCSSEECHHHHHHHHHHTTCC
T ss_pred CCCCCeEcHHHHHHHHHHhCCC
Confidence 3444456666666666666543
No 141
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=26.67 E-value=46 Score=25.60 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=33.8
Q ss_pred HHHHHHhhCCCCCcccHHH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccChhhHHHHH
Q 030812 38 ISRIMKKALPANGKIAKDA-KDTVQECVSEF----ISFITSEASDKCQKEKRKTINGDDLLWAM 96 (171)
Q Consensus 38 V~RImK~~LP~~~rISkDA-~~al~~caseF----I~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (171)
..+|++..+. ...++.|+ ...+.+.+.-| |.-+..+|...|...++.+|+.+|+..|+
T Consensus 191 r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 191 REQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHc-CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 3445554432 33455444 34444433222 33444566667778888899999999886
No 142
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=26.52 E-value=51 Score=30.15 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=27.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030812 52 IAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (171)
Q Consensus 52 ISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (171)
+++.++.+|.. |...|.+.+...|+.+|+|.||=
T Consensus 2 ~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHLLlaLl 35 (758)
T 1r6b_X 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLALL 35 (758)
T ss_dssp BCHHHHHHHHH------------HHHHHHHTTBSEECHHHHHHHHT
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 45666666664 77889999999999999999973
No 143
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=26.45 E-value=1.1e+02 Score=18.37 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=18.1
Q ss_pred HHHHhcCCCccChhhHHHHHHhcCCC
Q 030812 77 DKCQKEKRKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 77 ~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (171)
...-.++.-.|+.+++..+|..+|+.
T Consensus 14 ~~~D~d~~G~i~~~el~~~l~~~g~~ 39 (77)
T 2joj_A 14 DLFDTNKTGSIDYHELKVAMRALGFD 39 (77)
T ss_dssp HHHCCSSSSEEEHHHHHHHHHHHTCC
T ss_pred HHhCCCCCCCCcHHHHHHHHHHhCCC
Confidence 33445556678888888888888765
No 144
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=26.30 E-value=86 Score=24.29 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=30.9
Q ss_pred CcccHHHHHHHHHHHHH------------HHHHHHHH----HHHHHHhcCCC-ccChhhHHHHHHhcCC
Q 030812 50 GKIAKDAKDTVQECVSE------------FISFITSE----ASDKCQKEKRK-TINGDDLLWAMATLGF 101 (171)
Q Consensus 50 ~rISkDA~~al~~case------------FI~~Ltse----A~~~~~~~kRK-TI~~eDVl~AL~~LgF 101 (171)
..|+.++.+.|.+.+.. ....|... +.+.+..++++ +|+.+||..|++.+..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 46999999998887632 22222221 11222223322 5999999999986643
No 145
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=26.11 E-value=1.4e+02 Score=19.33 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=45.8
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc---CCCcchHHHH
Q 030812 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLK 109 (171)
Q Consensus 33 LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L---gF~dyv~~Lk 109 (171)
++...|.+|++..= .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--.+.+.
T Consensus 6 ~~~~e~~~l~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 83 (108)
T 2pvb_A 6 LKDADVAAALAACS-AADSFKHKEFFAKVGLASKSLD-DVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETK 83 (108)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHH
T ss_pred CCHHHHHHHHHHhC-CCCcCcHHHHHHHHhCChhHHH-HHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHH
Confidence 56677888888754 4556775432222110000000 11345566667778899999999999999 5543334444
Q ss_pred HHHHH
Q 030812 110 AYLMR 114 (171)
Q Consensus 110 ~~L~~ 114 (171)
..+..
T Consensus 84 ~~~~~ 88 (108)
T 2pvb_A 84 AFLAD 88 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 146
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=26.02 E-value=1.2e+02 Score=18.66 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=24.9
Q ss_pred HHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHH
Q 030812 76 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (171)
Q Consensus 76 ~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~ 113 (171)
....-.++.-.|+.+++..+|..+|+.-=...+...+.
T Consensus 20 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 20 FQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp HHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34445666678999999999998887533344444333
No 147
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=25.66 E-value=2.2e+02 Score=26.04 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=32.8
Q ss_pred cCchhHHHHHHHhhC--CCCCcccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhcCCCccC
Q 030812 32 YLPIANISRIMKKAL--PANGKIAKDAKDTVQECVSEFI---------------------SFITSEASDKCQKEKRKTIN 88 (171)
Q Consensus 32 ~LP~A~V~RImK~~L--P~~~rISkDA~~al~~caseFI---------------------~~LtseA~~~~~~~kRKTI~ 88 (171)
.++...+.+.+.-+- --...+++++.+.|.+.....= ..|-..|...|.-.+|..|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 355555555444331 0024677777776665433221 12233344455556666666
Q ss_pred hhhHHHHHH
Q 030812 89 GDDLLWAMA 97 (171)
Q Consensus 89 ~eDVl~AL~ 97 (171)
.+||..|++
T Consensus 473 ~eDV~~Ai~ 481 (506)
T 3f8t_A 473 PEDVDIAAE 481 (506)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666653
No 148
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=25.57 E-value=84 Score=19.53 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=26.4
Q ss_pred HHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHHH
Q 030812 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (171)
Q Consensus 77 ~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~~ 114 (171)
...-.++.-.|+.+++..+|..+|+.--.+.+...+..
T Consensus 30 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~ 67 (87)
T 1s6j_A 30 KMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDA 67 (87)
T ss_dssp HHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34456677789999999999999876444445444443
No 149
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=25.54 E-value=1.4e+02 Score=19.27 Aligned_cols=67 Identities=9% Similarity=0.101 Sum_probs=39.3
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
.+....|.++++..= .+..|+-+--..+......-... ...+....-.++.-+|+.+++..+|..++
T Consensus 5 ~~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~~-l~~~F~~~D~d~~G~I~~~el~~~l~~~~ 71 (108)
T 1rro_A 5 ILSAEDIAAALQECQ-DPDTFEPQKFFQTSGLSKMSASQ-VKDIFRFIDNDQSGYLDGDELKYFLQKFQ 71 (108)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHHHHHHHHSGGGSCHHH-HHHHHHHHCTTCSSEECTHHHHTGGGGTC
T ss_pred cCCHHHHHHHHHHcc-CCCCcCHHHHHHHHhcCcccHHH-HHHHHHHhCCCCCCcCCHHHHHHHHHHHh
Confidence 355677888888764 45567654322221100000011 12455566667777999999999999984
No 150
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=24.99 E-value=1.3e+02 Score=20.52 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=22.9
Q ss_pred HHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHH
Q 030812 79 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (171)
Q Consensus 79 ~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~ 113 (171)
.-.++.-+|+.+++..+|..+|+.--...+...+.
T Consensus 25 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 25 IDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp HCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred hCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34455667888888888888887544444544443
No 151
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=24.90 E-value=33 Score=31.22 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 51 KIAKDAKDTVQECVSE------------------FISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 51 rISkDA~~al~~case------------------FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
.+++++.+.|.+.... -+.-|...|...|.-.+|.+|+.+||..|++-
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 5677777777665322 12234455677788888999999999999853
No 152
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=24.85 E-value=85 Score=19.59 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=19.4
Q ss_pred HHHhcCCCccChhhHHHHHHhcCCC
Q 030812 78 KCQKEKRKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 78 ~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (171)
..-.++.-+|+.+++..+|..+|+.
T Consensus 22 ~~D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 22 IFDRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp HHSTTTTSCBCHHHHHHHHHHTSCC
T ss_pred HhCCCCCCcCcHHHHHHHHHHHcCC
Confidence 3445666689999999999998875
No 153
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=24.38 E-value=2.5e+02 Score=24.84 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHHHH
Q 030812 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (171)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~~y 115 (171)
.+....-.++.-+|+.+++..+|+.+|+.--.+.++..+..|
T Consensus 389 ~aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~ 430 (450)
T 3sg6_A 389 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430 (450)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 355666677788999999999999999764445555555544
No 154
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=24.09 E-value=1.4e+02 Score=20.99 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHhcCCC
Q 030812 74 EASDKCQKEKRKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (171)
.+....-.++.-.|+.+++..+|..+|..
T Consensus 113 ~~F~~~D~d~~G~Is~~El~~~l~~~g~~ 141 (191)
T 1uhk_A 113 ALFDIVDKDQNGAITLDEWKAYTKAAGII 141 (191)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCC
Confidence 55666667777889999999999998864
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=23.93 E-value=56 Score=25.70 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=34.3
Q ss_pred HHHHHHHhhCCCCCcccHHH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccChhhHHHHH
Q 030812 37 NISRIMKKALPANGKIAKDA-KDTVQECVSEF----ISFITSEASDKCQKEKRKTINGDDLLWAM 96 (171)
Q Consensus 37 ~V~RImK~~LP~~~rISkDA-~~al~~caseF----I~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (171)
....|++..+. ...++.|+ ...+.+...-| |.-+..+|...|...++.+|+.+||..|+
T Consensus 214 ~r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 214 GREQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 33455554443 33455544 33444333222 33344566667777888899999999886
No 156
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=23.91 E-value=53 Score=27.09 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=12.9
Q ss_pred CccChhhHHHHHHhc
Q 030812 85 KTINGDDLLWAMATL 99 (171)
Q Consensus 85 KTI~~eDVl~AL~~L 99 (171)
..|+.+||+.|++.|
T Consensus 113 ~~IS~dDi~rAik~L 127 (234)
T 3cuq_A 113 QDVSQDDLIRAIKKL 127 (234)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH
Confidence 589999999999754
No 157
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=23.57 E-value=1.6e+02 Score=25.46 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=39.3
Q ss_pred CchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 33 LPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 33 LP~A~V~RImK~~LP~------~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
+-...|.+.+.+.+.. ...+|..++.+|.. |...+..-+...|..+|||.||-.-
T Consensus 55 vd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~ 115 (468)
T 3pxg_A 55 LGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (468)
T ss_dssp CCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhc
Confidence 3345555556555532 24578888888875 6777788889999999999998654
No 158
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=23.43 E-value=40 Score=30.06 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=27.4
Q ss_pred HhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 030812 43 KKALPANGKIAKDAKDTVQECVSEFISFITSEASD 77 (171)
Q Consensus 43 K~~LP~~~rISkDA~~al~~caseFI~~LtseA~~ 77 (171)
|+++.+.--|-+|.+.||++||...=.||......
T Consensus 428 k~~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~ 462 (471)
T 1mu5_A 428 KESIAEVEDIEKEIKNALMEVARKLKQYLSEKRKE 462 (471)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555445789999999999999999999875443
No 159
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=23.37 E-value=2.8e+02 Score=22.74 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHHHHHhhCCC-CCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHh------------cCCCccChhhHHHHHHhcC
Q 030812 38 ISRIMKKALPA-NGKIAKDAKDTVQECVS----EFISFITSEASDKCQK------------EKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 38 V~RImK~~LP~-~~rISkDA~~al~~cas----eFI~~LtseA~~~~~~------------~kRKTI~~eDVl~AL~~Lg 100 (171)
...|++..+.. ...++.++...|.+.+. .-|..|..+|...+.+ ...+.|+.+|+..|++...
T Consensus 256 r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 256 RKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp HHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 34444444321 24577877777776543 2455566666555544 3346899999999998754
No 160
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.28 E-value=38 Score=23.86 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=11.2
Q ss_pred cChhhHHHHHHhcCCCc
Q 030812 87 INGDDLLWAMATLGFED 103 (171)
Q Consensus 87 I~~eDVl~AL~~LgF~d 103 (171)
=+.+||..-|+.+||++
T Consensus 30 Ws~~~V~~WL~~lgl~~ 46 (103)
T 2e8o_A 30 WGPEQVCSFLRRGGFEE 46 (103)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHcCCCh
Confidence 34567777777777765
No 161
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=23.04 E-value=85 Score=25.40 Aligned_cols=66 Identities=9% Similarity=-0.011 Sum_probs=35.6
Q ss_pred cCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHH
Q 030812 32 YLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (171)
Q Consensus 32 ~LP~A~V~RImK~~LP-~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (171)
.++...+.+.+++.+. .+..|+.+|...|.+.+.-=+..+..+-...+.-.+.++|+.+||...+.
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVN 207 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 4555566655555543 35689999999888765432222222222222212234788777655443
No 162
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=22.96 E-value=1.2e+02 Score=20.72 Aligned_cols=15 Identities=33% Similarity=0.264 Sum_probs=7.4
Q ss_pred CCCccChhhHHHHHH
Q 030812 83 KRKTINGDDLLWAMA 97 (171)
Q Consensus 83 kRKTI~~eDVl~AL~ 97 (171)
+.-+|+.++.+.++.
T Consensus 59 ~~g~i~~~eF~~~~~ 73 (148)
T 1exr_A 59 GNGTIDFPEFLSLMA 73 (148)
T ss_dssp CSSSEEHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHH
Confidence 334555555555443
No 163
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=22.83 E-value=1.7e+02 Score=19.32 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHHHH
Q 030812 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (171)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~~y 115 (171)
+....-.++.-.|+.+++..+|..+|..--.+.+...+..+
T Consensus 89 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 89 AFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 45555567778999999999999998654445555555544
No 164
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=22.74 E-value=1.2e+02 Score=21.41 Aligned_cols=29 Identities=21% Similarity=0.073 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCCccChhhHHHHHHhcCCC
Q 030812 74 EASDKCQKEKRKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (171)
.+....-.++.-.|+.+++..+|..+|..
T Consensus 117 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 145 (195)
T 1qv0_A 117 AVFDIFDKDGSGTITLDEWKAYGKISGIS 145 (195)
T ss_dssp HHHHHTC----CEECHHHHHHHHHHHSSC
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHHhCCC
Confidence 55666667777899999999999998864
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.52 E-value=89 Score=24.25 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=37.4
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHh
Q 030812 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (171)
Q Consensus 33 LP~A~V~RImK~~LP-~~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (171)
++...+..+++..+. .+..|+.++.+.|.+.+.--+..+-......+.. ...|+.+||..++..
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~ 225 (319)
T 2chq_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITAT 225 (319)
T ss_dssp CCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCC
Confidence 455666666665543 2567999998888776543333322222222222 346898888877653
No 166
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=22.20 E-value=1.2e+02 Score=18.74 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=16.4
Q ss_pred HHHHhcCCCccChhhHHHHHHhcC
Q 030812 77 DKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 77 ~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
...-.++.-.|+.+++..+|..+|
T Consensus 18 ~~~D~d~~G~i~~~el~~~l~~~g 41 (86)
T 2opo_A 18 KRFDTNGDGKISSSELGDALKTLG 41 (86)
T ss_dssp HHHCTTCSSEEEHHHHHHHHHTTT
T ss_pred HHHCCCCCCCcCHHHHHHHHHHcC
Confidence 344455566777788877777777
No 167
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.07 E-value=1.6e+02 Score=26.81 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=29.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhc
Q 030812 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (171)
Q Consensus 50 ~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (171)
..+|..++.+|++ |...+...+...|+.+||+.||=.-
T Consensus 78 ~~~s~~~~~vl~~------------A~~~a~~~~~~~I~~ehlLlall~~ 115 (758)
T 1r6b_X 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (758)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHH------------HHHHHHHcCCCEeeHHHHHHHHhcc
Confidence 3577777777775 5666777788899999999998543
No 168
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.47 E-value=47 Score=19.92 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=15.5
Q ss_pred CccChhhHHHHHHhcCCC
Q 030812 85 KTINGDDLLWAMATLGFE 102 (171)
Q Consensus 85 KTI~~eDVl~AL~~LgF~ 102 (171)
..++.++|+.+++.+||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 467889999999999985
No 169
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=21.22 E-value=1.4e+02 Score=21.80 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=29.4
Q ss_pred HHhcCCCccChhhHHHHHHhcCCCcchHHHHHHHHHH
Q 030812 79 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (171)
Q Consensus 79 ~~~~kRKTI~~eDVl~AL~~LgF~dyv~~Lk~~L~~y 115 (171)
..++++ .-+.+.++.||..+++.+.++.|+..|++-
T Consensus 57 ~~r~G~-~ATv~~L~~AL~~i~~~diAe~Ie~~l~~~ 92 (122)
T 3ezq_B 57 KNTEKE-NATVAHLVGALRSCQMNLVADLVQEVQQAR 92 (122)
T ss_dssp HHHCTT-TCCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhCC-CchHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344554 458899999999999999999999988864
No 170
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.20 E-value=1.8e+02 Score=26.70 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=39.9
Q ss_pred CchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhhHHHHHHhcC
Q 030812 33 LPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (171)
Q Consensus 33 LP~A~V~RImK~~LP~------~~rISkDA~~al~~caseFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (171)
+-...|.+-+.+.+.. ...+|..++.+|.. |...|.+-+...|..+|||.||=.-+
T Consensus 55 vd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~I~~ehlLlall~~~ 116 (758)
T 3pxi_A 55 LGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIREG 116 (758)
T ss_dssp CCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcC
Confidence 3345555656555532 24578888888875 66777888899999999999986543
No 171
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=20.86 E-value=1.3e+02 Score=19.21 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=20.3
Q ss_pred HHHHHhcCCCccChhhHHHHHHhcCCC
Q 030812 76 SDKCQKEKRKTINGDDLLWAMATLGFE 102 (171)
Q Consensus 76 ~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (171)
....-.++.-+|+.+++..+|..+|+.
T Consensus 33 F~~~D~d~~G~I~~~El~~~l~~~g~~ 59 (91)
T 2pmy_A 33 FAACDANRSGRLEREEFRALCTELRVR 59 (91)
T ss_dssp HHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCCCcHHHHHHHHHHcCcC
Confidence 344556667789999999999988853
No 172
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=20.71 E-value=1.3e+02 Score=24.18 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=14.1
Q ss_pred CccChhhHHHHHHhcCC
Q 030812 85 KTINGDDLLWAMATLGF 101 (171)
Q Consensus 85 KTI~~eDVl~AL~~LgF 101 (171)
..|+.+|+..||+..-=
T Consensus 284 ~~it~~df~~al~~~~p 300 (322)
T 3eie_A 284 PDLTIKDFLKAIKSTRP 300 (322)
T ss_dssp CCCCHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 45999999999997663
No 173
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=20.38 E-value=1.9e+02 Score=19.40 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=19.4
Q ss_pred HhcC-CCccChhhHHHHHHhcCCCcchHHHH
Q 030812 80 QKEK-RKTINGDDLLWAMATLGFEDYIDPLK 109 (171)
Q Consensus 80 ~~~k-RKTI~~eDVl~AL~~LgF~dyv~~Lk 109 (171)
-.++ .-+|+.+++..+|..+|+.--...+.
T Consensus 24 D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~ 54 (146)
T 2qac_A 24 NEKSSGGKISIDNASYNARKLGLAPSSIDEK 54 (146)
T ss_dssp HHHCBTTBEEHHHHHHHHHHTTCCCCHHHHH
T ss_pred CccCCCCcccHHHHHHHHHHhCCCCCHHHHH
Confidence 3444 55788888888888888754333333
No 174
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=20.27 E-value=1.8e+02 Score=19.96 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=10.3
Q ss_pred cCCCccChhhHHHHHHhcCC
Q 030812 82 EKRKTINGDDLLWAMATLGF 101 (171)
Q Consensus 82 ~kRKTI~~eDVl~AL~~LgF 101 (171)
++--+|+.+++..+|..+|+
T Consensus 37 d~~G~i~~~el~~~l~~~g~ 56 (166)
T 2mys_B 37 NADGIIDKDDLRETFAAMGR 56 (166)
T ss_pred CCCCcCCHHHHHHHHHHhCC
Confidence 33445555555555555554
No 175
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=20.03 E-value=1.2e+02 Score=20.75 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=5.6
Q ss_pred CccChhhHHHHH
Q 030812 85 KTINGDDLLWAM 96 (171)
Q Consensus 85 KTI~~eDVl~AL 96 (171)
-+|+.++.+.++
T Consensus 57 g~i~~~eF~~~~ 68 (143)
T 2obh_A 57 GKMNFGDFLTVM 68 (143)
T ss_dssp SEEEHHHHHHHH
T ss_pred CeeeHHHHHHHH
Confidence 345554444444
Done!