BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030813
MATAGSAEGKKITVLSIDGGGIRGIIPGTILAFLESKLQELDGPSARIADYFDVVAGTST
GGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPK
YDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDVCFTYL

High Scoring Gene Products

Symbol, full name Information P value
PLA2A
phospholipase A 2A
protein from Arabidopsis thaliana 1.9e-42
PLP1 protein from Arabidopsis thaliana 1.4e-39
PLP4
AT4G37050
protein from Arabidopsis thaliana 4.6e-34
AT5G43590 protein from Arabidopsis thaliana 4.7e-32
PLP6
AT2G39220
protein from Arabidopsis thaliana 7.8e-13
pPLAIIIbeta
AT3G54950
protein from Arabidopsis thaliana 3.3e-12
PLP9
PATATIN-like protein 9
protein from Arabidopsis thaliana 8.7e-11
VC0178
Patatin-related protein
protein from Vibrio cholerae O1 biovar El Tor str. N16961 1.8e-07
VC_0178
patatin family protein
protein from Vibrio cholerae O1 biovar El Tor 1.8e-07

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030813
        (171 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2066286 - symbol:PLA2A "phospholipase A 2A" sp...   449  1.9e-42   1
TAIR|locus:2114995 - symbol:PLP1 species:3702 "Arabidopsi...   422  1.4e-39   1
TAIR|locus:2115065 - symbol:PLP4 "AT4G37050" species:3702...   370  4.6e-34   1
TAIR|locus:2158337 - symbol:AT5G43590 species:3702 "Arabi...   351  4.7e-32   1
TAIR|locus:2056088 - symbol:PLP6 "PATATIN-like protein 6"...   178  7.8e-13   1
TAIR|locus:2082702 - symbol:pPLAIIIbeta "patatin-related ...   172  3.3e-12   1
TAIR|locus:2077269 - symbol:PLP9 "PATATIN-like protein 9"...   157  8.7e-11   1
UNIPROTKB|Q9KVG8 - symbol:VC0178 "Patatin-related protein...   126  1.8e-07   1
TIGR_CMR|VC_0178 - symbol:VC_0178 "patatin family protein...   126  1.8e-07   1


>TAIR|locus:2066286 [details] [associations]
            symbol:PLA2A "phospholipase A 2A" species:3702
            "Arabidopsis thaliana" [GO:0006629 "lipid metabolic process"
            evidence=IEA;IDA] [GO:0008152 "metabolic process" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=ISM] [GO:0045735 "nutrient
            reservoir activity" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0009626 "plant-type hypersensitive response"
            evidence=IEP;IMP] [GO:0016020 "membrane" evidence=IDA] [GO:0016298
            "lipase activity" evidence=IDA] [GO:0046686 "response to cadmium
            ion" evidence=IEP] [GO:0008219 "cell death" evidence=IGI]
            [GO:0031408 "oxylipin biosynthetic process" evidence=IMP]
            [GO:0051607 "defense response to virus" evidence=IMP] [GO:0071456
            "cellular response to hypoxia" evidence=IEP] [GO:0000165 "MAPK
            cascade" evidence=RCA] [GO:0002237 "response to molecule of
            bacterial origin" evidence=RCA] [GO:0002679 "respiratory burst
            involved in defense response" evidence=RCA] [GO:0006612 "protein
            targeting to membrane" evidence=RCA] [GO:0006944 "cellular membrane
            fusion" evidence=RCA] [GO:0009595 "detection of biotic stimulus"
            evidence=RCA] [GO:0009646 "response to absence of light"
            evidence=RCA] [GO:0009697 "salicylic acid biosynthetic process"
            evidence=RCA] [GO:0009723 "response to ethylene stimulus"
            evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
            acid mediated signaling pathway" evidence=RCA] [GO:0009863
            "salicylic acid mediated signaling pathway" evidence=RCA]
            [GO:0009867 "jasmonic acid mediated signaling pathway"
            evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
            [GO:0010310 "regulation of hydrogen peroxide metabolic process"
            evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
            response" evidence=RCA] [GO:0031348 "negative regulation of defense
            response" evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] [GO:0043069 "negative regulation of programmed cell
            death" evidence=RCA] [GO:0043900 "regulation of multi-organism
            process" evidence=RCA] [GO:0050832 "defense response to fungus"
            evidence=RCA] [GO:0051707 "response to other organism"
            evidence=RCA] InterPro:IPR002641 InterPro:IPR016035 Pfam:PF01734
            GO:GO:0005737 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0016020 GO:GO:0031408 GO:GO:0071456 GO:GO:0051607
            GO:GO:0016298 GO:GO:0009626 EMBL:AC002505 SUPFAM:SSF52151
            eggNOG:COG3621 HSSP:Q8LPW4 HOGENOM:HOG000189358 EMBL:AY062644
            EMBL:AY093305 IPI:IPI00536283 PIR:T00989 RefSeq:NP_180224.1
            UniGene:At.12388 ProteinModelPortal:O48723 SMR:O48723 IntAct:O48723
            STRING:O48723 PaxDb:O48723 PRIDE:O48723 DNASU:817197
            EnsemblPlants:AT2G26560.1 GeneID:817197 KEGG:ath:AT2G26560
            TAIR:At2g26560 InParanoid:O48723 OMA:KDVCRAT PhylomeDB:O48723
            ProtClustDB:CLSN2913024 ArrayExpress:O48723 Genevestigator:O48723
            Uniprot:O48723
        Length = 407

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 93/158 (58%), Positives = 109/158 (68%)

Query:     9 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPSARIADYFDVVAGTSTGGLVTTML 68
             G  +T+LS              L FLES+LQ+LDG  AR+ADYFDV+AGTSTGGLVT ML
Sbjct:    16 GNLVTILSIDGGGIRGLIPAVILGFLESELQKLDGEEARLADYFDVIAGTSTGGLVTAML 75

Query:    69 TAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRA 128
             TAPNKEG P  AA +I +FYLE  PKIFPQ    +F  S A  + K L GPKYDGKYL  
Sbjct:    76 TAPNKEGRPLFAASEIKDFYLEQCPKIFPQ---DHFPFSAAKKLVKSLTGPKYDGKYLHQ 132

Query:   129 LVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDV 166
             L++  LGD  + +TLTNVVIPTFDIK LQP IFS+ +V
Sbjct:   133 LIHAKLGDTKLSQTLTNVVIPTFDIKHLQPTIFSSYEV 170


>TAIR|locus:2114995 [details] [associations]
            symbol:PLP1 species:3702 "Arabidopsis thaliana"
            [GO:0006629 "lipid metabolic process" evidence=IEA] [GO:0008152
            "metabolic process" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0045735 "nutrient reservoir activity"
            evidence=ISS] [GO:0004620 "phospholipase activity" evidence=IDA]
            [GO:0010311 "lateral root formation" evidence=IMP]
            InterPro:IPR002641 InterPro:IPR016035 Pfam:PF01734 EMBL:CP002687
            GO:GO:0004620 GO:GO:0006629 GO:GO:0010311 EMBL:Z99707 EMBL:AL161590
            SUPFAM:SSF52151 EMBL:BT029750 IPI:IPI00528835 PIR:H85437
            RefSeq:NP_849511.1 UniGene:At.23952 HSSP:Q8LPW4
            ProteinModelPortal:O23179 SMR:O23179 PRIDE:O23179
            EnsemblPlants:AT4G37070.2 GeneID:829861 KEGG:ath:AT4G37070
            TAIR:At4g37070 HOGENOM:HOG000189358 InParanoid:O23179 OMA:GSAKEEY
            PhylomeDB:O23179 ProtClustDB:CLSN2685599 ArrayExpress:O23179
            Genevestigator:O23179 Uniprot:O23179
        Length = 414

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 88/155 (56%), Positives = 107/155 (69%)

Query:     9 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPSARIADYFDVVAGTSTGGLVTTML 68
             G  +T+LS              LAFLE +LQELDG  AR+ADYFDV+AGTSTGGLVT ML
Sbjct:    16 GSLVTILSLDGGGVRGIIAGVILAFLEKQLQELDGEEARLADYFDVIAGTSTGGLVTAML 75

Query:    69 TAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRA 128
             T P++ G P  AAKDI  FYLEH PKIFPQ +      ++   + K L GPKY GKYLR 
Sbjct:    76 TVPDETGRPHFAAKDIVPFYLEHCPKIFPQPTGVL---ALLPKLPKLLSGPKYSGKYLRN 132

Query:   129 LVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFST 163
             L+++LLG+  + +TLTN+VIPTFDIK LQP IFS+
Sbjct:   133 LLSKLLGETRLHQTLTNIVIPTFDIKKLQPTIFSS 167


>TAIR|locus:2115065 [details] [associations]
            symbol:PLP4 "AT4G37050" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0006629
            "lipid metabolic process" evidence=IEA] [GO:0008152 "metabolic
            process" evidence=IEA] [GO:0045735 "nutrient reservoir activity"
            evidence=ISS] [GO:0004620 "phospholipase activity" evidence=IDA]
            [GO:0009737 "response to abscisic acid stimulus" evidence=IDA]
            InterPro:IPR002641 InterPro:IPR016035 Pfam:PF01734 GO:GO:0009737
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0004620 GO:GO:0006629
            EMBL:Z99707 EMBL:AL161590 UniGene:At.4646 SUPFAM:SSF52151
            eggNOG:COG3621 HSSP:Q8LPW4 HOGENOM:HOG000189358 IPI:IPI00546583
            PIR:F85437 RefSeq:NP_195422.3 UniGene:At.48948
            ProteinModelPortal:O23181 PaxDb:O23181 PRIDE:O23181
            EnsemblPlants:AT4G37050.1 GeneID:829859 KEGG:ath:AT4G37050
            TAIR:At4g37050 InParanoid:O23181 OMA:HYQPISE PhylomeDB:O23181
            ProtClustDB:CLSN2914016 Genevestigator:O23181 Uniprot:O23181
        Length = 428

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 82/162 (50%), Positives = 104/162 (64%)

Query:     9 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPSARIADYFDVVAGTSTGGLVTTML 68
             G+ +T+LS              LA+LES+LQELDG  AR+ DYFDV++GTSTGGL+  ML
Sbjct:    32 GQLVTILSIDGGGIRGIIPGTILAYLESQLQELDGEEARLVDYFDVISGTSTGGLIVAML 91

Query:    69 TAPNKEGG-------PFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKY 121
             TA ++ GG       P   AK+I  FYL+H PKIFPQ  R  F      +I + + GPK+
Sbjct:    92 TAQDQSGGHSRNSNRPLFEAKEIVPFYLKHSPKIFPQ-PRGIFC-GWGETIVRLVGGPKF 149

Query:   122 DGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFST 163
             +GKYL  LV   LGD  + ++LTNVVIP FDIK LQPVIFS+
Sbjct:   150 NGKYLHDLVEGFLGDTKLTQSLTNVVIPCFDIKKLQPVIFSS 191


>TAIR|locus:2158337 [details] [associations]
            symbol:AT5G43590 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006629 "lipid metabolic
            process" evidence=IEA] [GO:0008152 "metabolic process"
            evidence=IEA] [GO:0045735 "nutrient reservoir activity"
            evidence=ISS] InterPro:IPR002641 InterPro:IPR016035 Pfam:PF01734
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016740 GO:GO:0006629
            GO:GO:0016787 EMBL:AB016875 SUPFAM:SSF52151 eggNOG:COG3621
            HSSP:Q8LPW4 HOGENOM:HOG000189358 IPI:IPI00534522 RefSeq:NP_199172.1
            UniGene:At.55341 ProteinModelPortal:Q9FIY1 SMR:Q9FIY1
            EnsemblPlants:AT5G43590.1 GeneID:834379 KEGG:ath:AT5G43590
            TAIR:At5g43590 InParanoid:Q9FIY1 OMA:REEYYSA PhylomeDB:Q9FIY1
            ProtClustDB:CLSN2916489 Genevestigator:Q9FIY1 Uniprot:Q9FIY1
        Length = 401

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 81/156 (51%), Positives = 97/156 (62%)

Query:     9 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGP-SARIADYFDVVAGTSTGGLVTTM 67
             G  +T+LS              LA LE  LQE+D   S R+ADYFDV+AGTSTGGL+T M
Sbjct:    11 GNLVTILSLDGGGVRGIIGGVILANLEKHLQEIDNDESVRLADYFDVIAGTSTGGLMTAM 70

Query:    68 LTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLR 127
             LTAPN  G P  AAKDI  FYLE  PKIF     S + +  A      L  PKY+G+YL 
Sbjct:    71 LTAPNDSGRPLYAAKDIVPFYLEESPKIF---YGSKWWDPSALWA---LFRPKYNGEYLH 124

Query:   128 ALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFST 163
               + E+LG+  + +TLTNVVIPTFDIK LQP IFS+
Sbjct:   125 TRLGEILGETKLDQTLTNVVIPTFDIKKLQPTIFSS 160


>TAIR|locus:2056088 [details] [associations]
            symbol:PLP6 "PATATIN-like protein 6" species:3702
            "Arabidopsis thaliana" [GO:0006629 "lipid metabolic process"
            evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
            [GO:0045735 "nutrient reservoir activity" evidence=ISS]
            InterPro:IPR002641 InterPro:IPR016035 Pfam:PF01734 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0006629 EMBL:AC004697 GO:GO:0016787
            SUPFAM:SSF52151 eggNOG:COG3621 HSSP:Q8LPW4 EMBL:AY062648
            EMBL:BT000763 EMBL:BT008869 IPI:IPI00541415 PIR:T02580
            RefSeq:NP_181455.1 UniGene:At.27277 ProteinModelPortal:O80959
            EnsemblPlants:AT2G39220.1 GeneID:818507 KEGG:ath:AT2G39220
            TAIR:At2g39220 HOGENOM:HOG000240266 InParanoid:O80959 OMA:ADHAPRM
            PhylomeDB:O80959 ProtClustDB:CLSN2683252 ArrayExpress:O80959
            Genevestigator:O80959 Uniprot:O80959
        Length = 499

 Score = 178 (67.7 bits), Expect = 7.8e-13, P = 7.8e-13
 Identities = 52/161 (32%), Positives = 75/161 (46%)

Query:    11 KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLT 69
             K+ VLS              LA+LE  L+   G P+ARIADYFDV +G+  GG+ T ML 
Sbjct:   107 KVCVLSIDSGGMRGIIPGKALAYLEHALKSKSGDPNARIADYFDVASGSGIGGIFTAMLF 166

Query:    70 APNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKY-DGKYLRA 128
             A +    P   A+D   F    G   +   ++S     I + + K   G     G  L  
Sbjct:   167 ASSDGNRPIFKAEDTWRFLAMKGKSFY---NKS--PPGILNRVMKTGSGGSGGSGSKLEK 221

Query:   129 LVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDVCFT 169
              + E   ++T+K+TL  V+IP +D+    P +FS  D   T
Sbjct:   222 AMKESFEELTLKDTLKPVLIPCYDLTSSAPFLFSRADALET 262


>TAIR|locus:2082702 [details] [associations]
            symbol:pPLAIIIbeta "patatin-related phospholipase
            IIIbeta" species:3702 "Arabidopsis thaliana" [GO:0006629 "lipid
            metabolic process" evidence=IEA] [GO:0008152 "metabolic process"
            evidence=IEA] [GO:0051707 "response to other organism"
            evidence=IEP] [GO:0004620 "phospholipase activity" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0006644
            "phospholipid metabolic process" evidence=IMP] [GO:0019374
            "galactolipid metabolic process" evidence=IMP] [GO:0047617
            "acyl-CoA hydrolase activity" evidence=IDA] InterPro:IPR002641
            InterPro:IPR016035 Pfam:PF01734 GO:GO:0005886 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AL049655 GO:GO:0004620 GO:GO:0006644
            GO:GO:0051707 GO:GO:0047617 SUPFAM:SSF52151 GO:GO:0019374
            eggNOG:COG3621 HOGENOM:HOG000240266 ProtClustDB:CLSN2683252
            EMBL:AK229196 IPI:IPI00543168 PIR:T06725 RefSeq:NP_191055.1
            UniGene:At.35065 ProteinModelPortal:Q9SV43 SMR:Q9SV43 PRIDE:Q9SV43
            EnsemblPlants:AT3G54950.1 GeneID:824660 KEGG:ath:AT3G54950
            TAIR:At3g54950 InParanoid:Q9SV43 OMA:QTKCVAV PhylomeDB:Q9SV43
            Genevestigator:Q9SV43 Uniprot:Q9SV43
        Length = 488

 Score = 172 (65.6 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 52/169 (30%), Positives = 76/169 (44%)

Query:     4 AGSAEGK--KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTST 60
             AGS + +  KI +LS              LA+LE  L+   G P+ARIADYFDV AG+  
Sbjct:    88 AGSIKNQRGKICILSIDGGGMRGILPGKALAYLEHALKSKSGDPNARIADYFDVAAGSGI 147

Query:    61 GGLVTTMLTAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPK 120
             GG+ T ML        P   A D   F   +   ++           I   + +   G  
Sbjct:   148 GGIYTAMLFGSRDGNRPIFKADDTWQFLTRNAKGLYG-------GAGILKRVLRTGSGCC 200

Query:   121 YDGKYLRALVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDVCFT 169
                  L+ ++ E   ++T+K+TL  V+IP +D+K   P +FS  D   T
Sbjct:   201 SGTAKLKKVMKESFSELTLKDTLKPVLIPCYDLKSSGPFLFSRADALET 249


>TAIR|locus:2077269 [details] [associations]
            symbol:PLP9 "PATATIN-like protein 9" species:3702
            "Arabidopsis thaliana" [GO:0005576 "extracellular region"
            evidence=ISM] [GO:0006629 "lipid metabolic process" evidence=IEA]
            [GO:0008152 "metabolic process" evidence=IEA] [GO:0045735 "nutrient
            reservoir activity" evidence=ISS] [GO:0010075 "regulation of
            meristem growth" evidence=RCA] InterPro:IPR002641
            InterPro:IPR016035 Pfam:PF01734 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006629 GO:GO:0016787
            SUPFAM:SSF52151 eggNOG:COG3621 HOGENOM:HOG000240266 EMBL:AY056391
            EMBL:BT001015 IPI:IPI00533387 RefSeq:NP_567142.1 UniGene:At.21311
            ProteinModelPortal:Q93ZQ3 SMR:Q93ZQ3 IntAct:Q93ZQ3 PRIDE:Q93ZQ3
            EnsemblPlants:AT3G63200.1 GeneID:825495 KEGG:ath:AT3G63200
            TAIR:At3g63200 InParanoid:Q93ZQ3 OMA:KVCRATS PhylomeDB:Q93ZQ3
            ProtClustDB:CLSN2689344 Genevestigator:Q93ZQ3 Uniprot:Q93ZQ3
        Length = 384

 Score = 157 (60.3 bits), Expect = 8.7e-11, P = 8.7e-11
 Identities = 43/155 (27%), Positives = 72/155 (46%)

Query:    10 KKITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTML 68
             +K  +LS              +  LE +++   G P A I+D+FD+VAGT  GG++  +L
Sbjct:    28 RKTRILSIDGGGTTGIVAAASILHLEHQIRLQTGDPHAHISDFFDIVAGTGIGGILAALL 87

Query:    69 TAPNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLLGPKYDGKYLRA 128
              A +  G P   A+D   F  E   ++F +I  +          +KR  G   + + L  
Sbjct:    88 VADDGSGRPMFTARDAVKFVAEKNSELF-EIRYTGVFRR-----NKRYSGKSME-RVLET 140

Query:   129 LVNELLGDV-TVKETLTNVVIPTFDIKLLQPVIFS 162
                   G V T+K+T   +++P +D+K   P +FS
Sbjct:   141 AFRREDGKVLTMKDTCKPLLVPCYDLKTSAPFVFS 175


>UNIPROTKB|Q9KVG8 [details] [associations]
            symbol:VC0178 "Patatin-related protein" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR002641
            InterPro:IPR016035 Pfam:PF01734 GenomeReviews:AE003852_GR
            GO:GO:0006629 SUPFAM:SSF52151 EMBL:AE004108 PIR:E82354
            RefSeq:NP_229835.1 ProteinModelPortal:Q9KVG8 DNASU:2614189
            GeneID:2614189 KEGG:vch:VC0178 PATRIC:20079406 KO:K06900
            OMA:ENEYIDG ProtClustDB:CLSK695882 Uniprot:Q9KVG8
        Length = 355

 Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 41/156 (26%), Positives = 71/156 (45%)

Query:    11 KITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPSA-RIADYFDVVAGTSTGGLVTTMLT 69
             ++ +LS              LA +E  ++E  G +  ++ DYFD++ GTS GG++   L 
Sbjct:    13 QVRILSLNGGGARGLFTISLLAEIERIIEEKQGINGFKVGDYFDLITGTSIGGILALGL- 71

Query:    70 APNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLL-GPKYDGKYLRA 128
             A  K      +A+++ + + +    IFP+     F          RL  GP YD K L  
Sbjct:    72 AYGK------SARELEDVFRKQAGYIFPEQKYPRFFPVFRRRY--RLARGPLYDSKPLAK 123

Query:   129 LVNELLGDV-TVKETLTNVVIPTFDIKLLQPVIFST 163
              +  ++G+  T  +    V+IPT ++   +P  F T
Sbjct:   124 TIASMVGEESTFNDLKCRVLIPTVNLSTGKPQFFKT 159


>TIGR_CMR|VC_0178 [details] [associations]
            symbol:VC_0178 "patatin family protein" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR002641 InterPro:IPR016035 Pfam:PF01734
            GenomeReviews:AE003852_GR GO:GO:0006629 SUPFAM:SSF52151
            EMBL:AE004108 PIR:E82354 RefSeq:NP_229835.1
            ProteinModelPortal:Q9KVG8 DNASU:2614189 GeneID:2614189
            KEGG:vch:VC0178 PATRIC:20079406 KO:K06900 OMA:ENEYIDG
            ProtClustDB:CLSK695882 Uniprot:Q9KVG8
        Length = 355

 Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 41/156 (26%), Positives = 71/156 (45%)

Query:    11 KITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPSA-RIADYFDVVAGTSTGGLVTTMLT 69
             ++ +LS              LA +E  ++E  G +  ++ DYFD++ GTS GG++   L 
Sbjct:    13 QVRILSLNGGGARGLFTISLLAEIERIIEEKQGINGFKVGDYFDLITGTSIGGILALGL- 71

Query:    70 APNKEGGPFIAAKDINNFYLEHGPKIFPQISRSNFSESIASSIDKRLL-GPKYDGKYLRA 128
             A  K      +A+++ + + +    IFP+     F          RL  GP YD K L  
Sbjct:    72 AYGK------SARELEDVFRKQAGYIFPEQKYPRFFPVFRRRY--RLARGPLYDSKPLAK 123

Query:   129 LVNELLGDV-TVKETLTNVVIPTFDIKLLQPVIFST 163
              +  ++G+  T  +    V+IPT ++   +P  F T
Sbjct:   124 TIASMVGEESTFNDLKCRVLIPTVNLSTGKPQFFKT 159


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       157   0.00079  106 3  11 22  0.37    32
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  544 (58 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.96u 0.18s 14.14t   Elapsed:  00:00:01
  Total cpu time:  13.96u 0.18s 14.14t   Elapsed:  00:00:01
  Start:  Mon May 20 19:13:45 2013   End:  Mon May 20 19:13:46 2013

Back to top