BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030814
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PX8|A Chain A, Crystal Structure Of Beta-D-Xylosidase From
           Thermoanaerobacterium Saccharolyticum, A Family 39
           Glycoside Hydrolase
 pdb|1PX8|B Chain B, Crystal Structure Of Beta-D-Xylosidase From
           Thermoanaerobacterium Saccharolyticum, A Family 39
           Glycoside Hydrolase
 pdb|1UHV|A Chain A, Crystal Structure Of Beta-D-Xylosidase From
           Thermoanaerobacterium Saccharolyticum, A Family 39
           Glycoside Hydrolase
 pdb|1UHV|B Chain B, Crystal Structure Of Beta-D-Xylosidase From
           Thermoanaerobacterium Saccharolyticum, A Family 39
           Glycoside Hydrolase
 pdb|1UHV|C Chain C, Crystal Structure Of Beta-D-Xylosidase From
           Thermoanaerobacterium Saccharolyticum, A Family 39
           Glycoside Hydrolase
 pdb|1UHV|D Chain D, Crystal Structure Of Beta-D-Xylosidase From
           Thermoanaerobacterium Saccharolyticum, A Family 39
           Glycoside Hydrolase
          Length = 500

 Score = 26.9 bits (58), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 111 KVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPA--VKKFEQAASKKSYKPNC 162
           +V E  K G PA    + +WI  F+    EEN P   V +    + +  Y P+ 
Sbjct: 188 EVNENLKVGGPAICGGADYWIEDFLNFCYEENVPVDFVSRHAYTSKQGEYTPHL 241


>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
           Hmw1c Glycosyltransferase
 pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
           Hmw1c Glycosyltransferase
 pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
           Hmw1c Glycosyltransferase In Complex With Udp-Glc
 pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
           Hmw1c Glycosyltransferase In Complex With Udp-Glc
 pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
           Hmw1c Glycosyltransferase In The Presence Of Peptide
           N1131
 pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
           Hmw1c Glycosyltransferase In The Presence Of Peptide
           N1131
          Length = 631

 Score = 26.6 bits (57), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 135 VQTSLEENEPAVKKFEQAASKKSYKPNC 162
           V T   EN+P V  FE A + K Y+  C
Sbjct: 9   VGTMENENKPNVANFEAAVAAKDYEKAC 36


>pdb|2X9P|A Chain A, X-Ray Structure Of The Substrate-Free Cytochrome P450 Pimd
           - A Polyene Macrolide Antibiotic Pimaricin Epoxidase
 pdb|2XBK|A Chain A, X-Ray Structure Of The Substrate-Bound Cytochrome P450
           Pimd - A Polyene Macrolide Antibiotic Pimaricin
           Epoxidase
          Length = 404

 Score = 26.2 bits (56), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 70  IVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAE 114
           +  D + +L+   L   L  +A +  +GV++ A +P Q+ A +A+
Sbjct: 226 LTEDRVAHLAMGLLFAGLDSVASIMDNGVVLLAAHPDQRAAALAD 270


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,130,053
Number of Sequences: 62578
Number of extensions: 194816
Number of successful extensions: 444
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 4
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)