BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030814
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720 OS=Arabidopsis thaliana
GN=At3g49720 PE=1 SV=1
Length = 261
Score = 303 bits (776), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 145/170 (85%), Positives = 156/170 (91%)
Query: 1 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLP 60
M KVLHVGPDTCSVVS+LLKEEETEAWGVEPYDIEDAD+ CKS V KG+VRVADIKFPLP
Sbjct: 91 MRKVLHVGPDTCSVVSSLLKEEETEAWGVEPYDIEDADSHCKSFVSKGLVRVADIKFPLP 150
Query: 61 YRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGR 120
YRAKSF LVIVSDALDYLSPKYLNKT+P+LARVASDGV++FAG PGQQRAKVAELSKFGR
Sbjct: 151 YRAKSFSLVIVSDALDYLSPKYLNKTVPELARVASDGVVLFAGLPGQQRAKVAELSKFGR 210
Query: 121 PAKMRSSSWWIRYFVQTSLEENEPAVKKFEQAASKKSYKPNCQVFHLKPL 170
PAKMRS+SWW R+FVQT+LEEN+ KKFEQA SK YKP CQVFHLKPL
Sbjct: 211 PAKMRSASWWNRFFVQTNLEENDAPSKKFEQAVSKGLYKPACQVFHLKPL 260
>sp|Q8R600|EFTS_FUSNN Elongation factor Ts OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=tsf PE=3 SV=2
Length = 297
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 71 VSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL-SKFGRPAKMRSSSW 129
+ ++DYL K + K + R+A++G++ P ++A + E S+ AK
Sbjct: 34 IEKSIDYLREKGIAKAVKKAGRIAAEGLIFDEATPDHKKAVILEFNSETDFVAKNEEFKE 93
Query: 130 WIRYFVQTSLEENEPAVKKFEQA 152
+ R V+ +LE N +++ +A
Sbjct: 94 FGRKLVKIALERNVHQLEELNEA 116
>sp|Q9VVX3|FRIZ2_DROME Frizzled-2 OS=Drosophila melanogaster GN=fz2 PE=1 SV=1
Length = 694
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
Query: 41 CKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLI 100
C +L+ + +F P R P+V +S ++ YL++ +A DG+L+
Sbjct: 330 CSTLMTLTTFIIDTERFKYPER----PIVFLSACYFMVAVGYLSRNFLQNEEIACDGLLL 385
Query: 101 FAGYPGQQRAKVAELSK--FGRPAKMRSSSWWI----RYFVQTSLEENEPAVKKFEQ 151
G + L FG M SS WW+ +F+ L+ A+ K Q
Sbjct: 386 RESSTGPHSCTLVFLLTYFFG----MASSIWWVILSFTWFLAAGLKWGNEAITKHSQ 438
>sp|Q5UPL2|YR135_MIMIV Putative GMC-type oxidoreductase R135 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R135 PE=1 SV=1
Length = 702
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 127 SSWWIRYFVQTSLEENEPAVKKFEQAASKKSYKP 160
++WW YFV T + ++ PA ++F SK SY P
Sbjct: 587 ANWW-HYFVPTLVGDDTPAGREFADTLSKLSYYP 619
>sp|Q49Y37|AROE_STAS1 Shikimate dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=aroE
PE=3 SV=1
Length = 265
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 25/127 (19%)
Query: 31 PYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDL 90
PY +++ D + K++ V++ D K+ + Y +D + Y++ L + PDL
Sbjct: 69 PY-LDEIDEQSKTVGAVNTVKIVDGKW-IGYN---------TDGIGYVTG--LRQVYPDL 115
Query: 91 ARVASDGVLIFAGYPGQQRAKVAELSKFGRP-------AKMRSSSWWIRYFVQTSLEENE 143
D ++ G G + EL KF RP + R SW + + SL+E E
Sbjct: 116 ----EDAYILILGAGGASKGLANELKKFVRPKLTVANRSMDRFESWQLE-VNKISLQEAE 170
Query: 144 PAVKKFE 150
A+ +F+
Sbjct: 171 AALSEFD 177
>sp|Q5UQZ2|YL893_MIMIV Putative truncated GMC-type inactive oxidoreductase L893
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L893 PE=1
SV=1
Length = 151
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 128 SWWIRYFVQTSLEENEPAVKKFEQAASKKSYKP 160
+WW YFV + + ++ PA K F SK SY P
Sbjct: 37 NWW-HYFVPSLVNDDTPAGKLFASTLSKLSYYP 68
>sp|Q18BE2|MNMA_CLOD6 tRNA-specific 2-thiouridylase MnmA OS=Clostridium difficile (strain
630) GN=mnmA PE=3 SV=1
Length = 361
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 8 GPDTCSVVSTLLKEEETEAWGV-----EPYDIEDADARCKSLVHKGIVRVADIKFPLPYR 62
G SV + LLK++ + GV + D+ + + C SL R K +P+
Sbjct: 13 GGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDVVEIEGGCCSLSAVEDARRVANKIGIPFY 72
Query: 63 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPA 122
+F V +DY +YL P+ +A + + F + + R + G A
Sbjct: 73 VLNFREVFKEKVIDYFIDEYLEGKTPNPC-IACNKHIKFDDFYKKARQIGCDYVATGHYA 131
Query: 123 KMRSSSWWIRYFVQTSLEE 141
K+ RY ++ S+ +
Sbjct: 132 KIEKDESTGRYLLKKSVTD 150
>sp|Q63T93|GLGE_BURPS Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase
OS=Burkholderia pseudomallei (strain K96243) GN=glgE
PE=3 SV=2
Length = 1136
Score = 29.6 bits (65), Expect = 9.4, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 92 RVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWW 130
R A + + AG PG++R +A+L+ G A S WW
Sbjct: 189 RQARADLPVIAGVPGREREALAQLACAGFDAAFSSLRWW 227
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,149,481
Number of Sequences: 539616
Number of extensions: 2444430
Number of successful extensions: 5895
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5891
Number of HSP's gapped (non-prelim): 13
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)