Query 030814
Match_columns 171
No_of_seqs 23 out of 25
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 04:58:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07021 MetW: Methionine bios 99.3 1.5E-12 3.2E-17 107.3 4.5 142 2-158 15-160 (193)
2 PF08241 Methyltransf_11: Meth 98.9 4.3E-09 9.2E-14 68.2 6.3 88 5-97 1-90 (95)
3 TIGR02021 BchM-ChlM magnesium 98.8 2.6E-08 5.6E-13 77.2 9.4 134 2-141 57-201 (219)
4 PF13489 Methyltransf_23: Meth 98.8 7.1E-09 1.5E-13 73.4 4.7 129 2-143 24-160 (161)
5 TIGR03587 Pse_Me-ase pseudamin 98.8 1.6E-08 3.5E-13 80.3 7.0 97 3-103 46-143 (204)
6 TIGR02081 metW methionine bios 98.7 8.7E-08 1.9E-12 73.5 9.1 132 3-142 16-163 (194)
7 PRK07580 Mg-protoporphyrin IX 98.5 9.8E-07 2.1E-11 67.5 9.4 95 2-101 65-163 (230)
8 PLN02336 phosphoethanolamine N 98.4 6.4E-07 1.4E-11 77.2 7.7 135 2-142 39-178 (475)
9 PLN02244 tocopherol O-methyltr 98.4 3.6E-06 7.8E-11 71.3 10.3 134 2-141 120-273 (340)
10 PTZ00098 phosphoethanolamine N 98.3 2.8E-06 6.2E-11 69.4 7.3 136 2-141 54-197 (263)
11 PRK06202 hypothetical protein; 98.3 1.7E-06 3.7E-11 67.8 5.4 96 3-101 63-165 (232)
12 PRK10258 biotin biosynthesis p 98.2 9.6E-06 2.1E-10 64.0 9.0 97 2-104 44-141 (251)
13 TIGR02072 BioC biotin biosynth 98.2 1.2E-05 2.5E-10 60.5 8.7 96 3-103 37-135 (240)
14 PRK05785 hypothetical protein; 98.2 6E-06 1.3E-10 66.3 7.6 97 2-106 53-150 (226)
15 smart00828 PKS_MT Methyltransf 98.2 8.6E-06 1.9E-10 62.6 8.0 134 2-142 1-140 (224)
16 PLN02336 phosphoethanolamine N 98.1 1E-05 2.2E-10 69.9 8.3 130 3-141 269-409 (475)
17 PRK11036 putative S-adenosyl-L 98.1 2.1E-05 4.5E-10 62.9 8.4 94 3-102 47-148 (255)
18 PLN02585 magnesium protoporphy 98.1 2.4E-05 5.3E-10 67.2 9.4 131 3-141 147-294 (315)
19 PF13649 Methyltransf_25: Meth 98.0 5.3E-06 1.1E-10 57.2 3.1 91 4-97 1-100 (101)
20 TIGR00452 methyltransferase, p 98.0 5E-05 1.1E-09 65.4 9.3 136 2-141 123-268 (314)
21 TIGR01934 MenG_MenH_UbiE ubiqu 98.0 3.9E-05 8.5E-10 57.5 7.4 97 3-104 42-144 (223)
22 TIGR00740 methyltransferase, p 97.9 0.00015 3.3E-09 57.2 10.6 96 3-103 56-161 (239)
23 PRK15068 tRNA mo(5)U34 methylt 97.9 9.1E-05 2E-09 63.0 9.2 98 2-103 124-226 (322)
24 PF08242 Methyltransf_12: Meth 97.8 1.2E-05 2.6E-10 54.6 2.4 91 5-97 1-96 (99)
25 PLN02490 MPBQ/MSBQ methyltrans 97.8 0.00012 2.5E-09 64.1 8.0 129 3-142 116-252 (340)
26 PLN02396 hexaprenyldihydroxybe 97.8 0.00013 2.9E-09 62.8 8.2 97 3-105 134-236 (322)
27 PRK15451 tRNA cmo(5)U34 methyl 97.8 0.00022 4.8E-09 57.3 9.0 128 3-146 59-197 (247)
28 cd02440 AdoMet_MTases S-adenos 97.7 9.8E-05 2.1E-09 45.9 5.3 97 3-102 1-103 (107)
29 TIGR02752 MenG_heptapren 2-hep 97.7 0.00021 4.6E-09 55.2 7.7 97 3-102 48-150 (231)
30 PRK00216 ubiE ubiquinone/menaq 97.7 0.00017 3.8E-09 54.5 6.9 99 3-104 54-159 (239)
31 PRK08317 hypothetical protein; 97.7 0.0001 2.3E-09 55.0 5.6 99 2-103 21-124 (241)
32 PLN02233 ubiquinone biosynthes 97.7 0.00024 5.1E-09 58.2 8.0 98 3-103 76-182 (261)
33 PF13847 Methyltransf_31: Meth 97.6 0.00016 3.5E-09 53.1 5.7 99 2-106 5-112 (152)
34 PRK11207 tellurite resistance 97.6 0.00033 7.1E-09 54.7 7.4 95 2-101 32-132 (197)
35 PRK01683 trans-aconitate 2-met 97.6 0.00045 9.7E-09 54.6 8.1 98 2-106 33-132 (258)
36 TIGR00477 tehB tellurite resis 97.5 0.00046 1E-08 53.8 7.6 93 3-100 33-130 (195)
37 PRK05134 bifunctional 3-demeth 97.4 0.00082 1.8E-08 52.2 8.0 99 3-104 51-152 (233)
38 COG2226 UbiE Methylase involve 97.4 0.00035 7.5E-09 58.9 6.4 102 2-107 53-162 (238)
39 TIGR01983 UbiG ubiquinone bios 97.4 0.0013 2.8E-08 50.4 8.9 94 3-103 48-149 (224)
40 smart00138 MeTrc Methyltransfe 97.4 0.00046 1E-08 57.0 6.3 51 52-103 191-241 (264)
41 PF12847 Methyltransf_18: Meth 97.4 0.00036 7.7E-09 47.5 4.5 100 2-102 3-110 (112)
42 PRK14103 trans-aconitate 2-met 97.4 0.0018 3.8E-08 51.8 9.1 92 2-102 31-125 (255)
43 TIGR02469 CbiT precorrin-6Y C5 97.3 0.001 2.2E-08 45.4 6.7 98 2-104 21-123 (124)
44 PRK00517 prmA ribosomal protei 97.3 0.00099 2.1E-08 53.8 7.1 97 2-108 121-218 (250)
45 PF01209 Ubie_methyltran: ubiE 97.2 0.00056 1.2E-08 56.1 5.2 147 3-153 50-212 (233)
46 PRK11088 rrmA 23S rRNA methylt 97.2 0.0015 3.2E-08 53.1 7.0 92 3-107 88-184 (272)
47 PRK08287 cobalt-precorrin-6Y C 97.1 0.0017 3.6E-08 49.5 6.6 93 2-102 33-130 (187)
48 smart00650 rADc Ribosomal RNA 97.1 0.0012 2.5E-08 49.9 5.4 120 3-133 16-138 (169)
49 PRK00121 trmB tRNA (guanine-N( 97.1 0.0018 3.8E-08 51.0 6.5 122 2-123 42-177 (202)
50 TIGR03534 RF_mod_PrmC protein- 97.0 0.0044 9.4E-08 47.9 8.1 65 3-71 90-160 (251)
51 PRK12335 tellurite resistance 97.0 0.0018 3.8E-08 53.3 6.1 95 3-102 123-222 (287)
52 PRK13944 protein-L-isoaspartat 97.0 0.0037 7.9E-08 49.2 7.3 90 3-102 75-172 (205)
53 TIGR00537 hemK_rel_arch HemK-r 96.9 0.0038 8.3E-08 47.3 6.9 98 2-103 21-140 (179)
54 PRK00312 pcm protein-L-isoaspa 96.9 0.0059 1.3E-07 47.4 7.5 91 2-103 80-175 (212)
55 PRK11705 cyclopropane fatty ac 96.8 0.0038 8.3E-08 54.6 7.1 95 2-102 169-266 (383)
56 TIGR00406 prmA ribosomal prote 96.8 0.0054 1.2E-07 50.9 7.4 105 2-114 161-270 (288)
57 PRK11873 arsM arsenite S-adeno 96.8 0.021 4.5E-07 45.9 10.4 135 2-141 79-225 (272)
58 PRK13942 protein-L-isoaspartat 96.7 0.0081 1.8E-07 47.7 7.5 90 2-102 78-175 (212)
59 TIGR00080 pimt protein-L-isoas 96.2 0.024 5.1E-07 44.5 7.3 90 2-102 79-176 (215)
60 PRK06922 hypothetical protein; 96.2 0.0076 1.7E-07 58.1 5.3 97 2-102 420-536 (677)
61 PRK11188 rrmJ 23S rRNA methylt 96.0 0.024 5.1E-07 45.4 6.2 95 3-105 54-167 (209)
62 TIGR00417 speE spermidine synt 95.9 0.021 4.6E-07 46.9 5.8 104 2-108 74-192 (270)
63 PRK14967 putative methyltransf 95.9 0.087 1.9E-06 41.6 9.0 68 3-72 39-108 (223)
64 PRK14968 putative methyltransf 95.8 0.076 1.6E-06 39.1 8.0 69 2-73 25-98 (188)
65 PRK09328 N5-glutamine S-adenos 95.8 0.026 5.6E-07 44.7 5.7 67 3-71 111-181 (275)
66 TIGR02716 C20_methyl_CrtF C-20 95.5 0.12 2.7E-06 42.5 8.7 96 2-103 151-254 (306)
67 PRK00107 gidB 16S rRNA methylt 95.4 0.1 2.3E-06 41.6 7.8 108 2-118 47-159 (187)
68 TIGR00438 rrmJ cell division p 95.3 0.067 1.5E-06 41.0 6.4 96 2-106 34-149 (188)
69 PF13659 Methyltransf_26: Meth 95.3 0.016 3.4E-07 39.9 2.5 70 2-72 2-77 (117)
70 PRK00811 spermidine synthase; 95.2 0.06 1.3E-06 45.0 6.3 103 2-107 78-196 (283)
71 TIGR01177 conserved hypothetic 95.2 0.079 1.7E-06 44.6 7.0 93 3-97 185-287 (329)
72 PRK04266 fibrillarin; Provisio 95.2 0.052 1.1E-06 44.5 5.7 96 3-105 75-177 (226)
73 PTZ00146 fibrillarin; Provisio 95.1 0.071 1.5E-06 46.7 6.6 93 3-101 135-235 (293)
74 PF02353 CMAS: Mycolic acid cy 95.0 0.078 1.7E-06 44.7 6.3 93 2-100 64-163 (273)
75 TIGR00091 tRNA (guanine-N(7)-) 94.7 0.11 2.4E-06 40.4 6.3 104 2-105 18-134 (194)
76 PF05401 NodS: Nodulation prot 94.4 0.096 2.1E-06 44.2 5.6 97 2-104 45-147 (201)
77 PRK13168 rumA 23S rRNA m(5)U19 94.3 0.13 2.8E-06 45.3 6.4 107 3-117 300-414 (443)
78 PF08003 Methyltransf_9: Prote 94.2 0.083 1.8E-06 47.3 5.1 118 2-126 117-241 (315)
79 TIGR00536 hemK_fam HemK family 94.2 0.24 5.1E-06 41.0 7.3 68 2-71 116-188 (284)
80 TIGR00138 gidB 16S rRNA methyl 94.0 0.21 4.5E-06 39.3 6.3 96 2-105 44-144 (181)
81 PRK03612 spermidine synthase; 93.9 0.16 3.4E-06 46.2 6.3 98 2-103 299-415 (521)
82 PHA03411 putative methyltransf 93.9 0.11 2.3E-06 45.5 4.9 75 2-80 66-141 (279)
83 COG3897 Predicted methyltransf 93.8 0.12 2.6E-06 44.6 5.1 109 2-116 81-191 (218)
84 TIGR03438 probable methyltrans 93.6 0.27 5.9E-06 41.1 6.8 100 3-103 66-176 (301)
85 PF01135 PCMT: Protein-L-isoas 93.6 0.16 3.5E-06 41.5 5.3 94 2-104 74-174 (209)
86 TIGR03704 PrmC_rel_meth putati 93.6 0.45 9.8E-06 39.2 7.9 67 3-71 89-159 (251)
87 TIGR02085 meth_trns_rumB 23S r 93.5 0.096 2.1E-06 45.4 4.1 107 2-115 235-346 (374)
88 TIGR03533 L3_gln_methyl protei 93.4 0.44 9.6E-06 39.9 7.6 67 3-71 124-195 (284)
89 PRK07402 precorrin-6B methylas 93.3 0.37 8E-06 37.1 6.5 94 3-102 43-141 (196)
90 TIGR00755 ksgA dimethyladenosi 93.2 0.33 7.2E-06 39.3 6.5 80 3-88 32-116 (253)
91 PRK03522 rumB 23S rRNA methylu 93.1 0.26 5.7E-06 41.4 6.0 104 2-115 175-286 (315)
92 PRK00377 cbiT cobalt-precorrin 93.1 0.29 6.2E-06 38.0 5.7 113 3-120 43-163 (198)
93 PRK01544 bifunctional N5-gluta 93.1 0.33 7E-06 44.3 6.9 67 3-71 141-212 (506)
94 PLN02823 spermine synthase 93.0 0.19 4E-06 44.1 5.1 94 2-103 105-220 (336)
95 PRK11805 N5-glutamine S-adenos 92.9 0.48 1E-05 40.4 7.3 68 3-72 136-208 (307)
96 PRK10909 rsmD 16S rRNA m(2)G96 92.6 0.25 5.3E-06 40.1 4.9 94 3-103 56-159 (199)
97 PRK04457 spermidine synthase; 92.6 0.26 5.6E-06 40.9 5.1 97 2-101 68-175 (262)
98 PRK14903 16S rRNA methyltransf 92.2 0.71 1.5E-05 41.1 7.7 98 2-103 239-366 (431)
99 COG2264 PrmA Ribosomal protein 92.1 0.32 6.9E-06 42.9 5.3 105 2-114 164-274 (300)
100 PLN02781 Probable caffeoyl-CoA 92.0 0.33 7.2E-06 39.6 5.0 96 2-103 70-178 (234)
101 PRK14904 16S rRNA methyltransf 91.9 0.82 1.8E-05 40.5 7.7 99 2-103 252-377 (445)
102 PF06325 PrmA: Ribosomal prote 91.7 0.65 1.4E-05 40.2 6.7 104 2-115 163-271 (295)
103 PF10294 Methyltransf_16: Puta 91.7 0.44 9.5E-06 37.0 5.1 71 2-76 47-130 (173)
104 PRK13255 thiopurine S-methyltr 91.5 1.1 2.4E-05 36.5 7.5 90 2-97 39-148 (218)
105 TIGR00479 rumA 23S rRNA (uraci 91.4 0.33 7.2E-06 42.2 4.7 109 3-119 295-412 (431)
106 PLN02232 ubiquinone biosynthes 91.4 0.32 7E-06 37.0 4.1 45 50-97 30-74 (160)
107 COG0500 SmtA SAM-dependent met 91.2 2.1 4.5E-05 25.6 6.6 95 4-103 52-155 (257)
108 PLN03075 nicotianamine synthas 91.0 0.53 1.1E-05 41.2 5.5 99 2-104 125-233 (296)
109 PRK14896 ksgA 16S ribosomal RN 90.9 0.26 5.6E-06 40.3 3.3 76 2-85 31-110 (258)
110 PRK13943 protein-L-isoaspartat 90.8 0.72 1.6E-05 40.2 6.2 89 2-101 82-178 (322)
111 PF11899 DUF3419: Protein of u 90.6 0.23 5E-06 44.4 3.0 39 63-101 293-332 (380)
112 KOG1541 Predicted protein carb 90.5 0.42 9.1E-06 42.4 4.4 71 4-79 54-126 (270)
113 KOG1271 Methyltransferases [Ge 90.3 1.3 2.8E-05 38.6 7.2 112 3-119 70-197 (227)
114 PRK11783 rlmL 23S rRNA m(2)G24 90.1 0.72 1.6E-05 43.6 6.0 118 2-121 540-674 (702)
115 TIGR03840 TMPT_Se_Te thiopurin 90.1 1.7 3.6E-05 35.3 7.4 95 3-103 37-152 (213)
116 TIGR00563 rsmB ribosomal RNA s 89.4 1.7 3.7E-05 38.2 7.4 66 2-71 240-315 (426)
117 COG2890 HemK Methylase of poly 89.3 0.68 1.5E-05 39.2 4.7 73 3-86 113-190 (280)
118 PF05175 MTS: Methyltransferas 88.5 1.2 2.7E-05 33.9 5.2 68 2-72 33-105 (170)
119 PRK09489 rsmC 16S ribosomal RN 88.3 1.6 3.4E-05 38.1 6.4 98 3-103 199-303 (342)
120 PF09243 Rsm22: Mitochondrial 88.0 1.3 2.9E-05 37.1 5.6 100 2-106 35-144 (274)
121 PF01596 Methyltransf_3: O-met 88.0 0.64 1.4E-05 37.9 3.6 102 2-108 47-162 (205)
122 PRK14966 unknown domain/N5-glu 86.7 2.9 6.3E-05 38.6 7.4 65 3-71 254-325 (423)
123 PRK00274 ksgA 16S ribosomal RN 86.5 1.1 2.3E-05 37.1 4.1 81 3-88 45-127 (272)
124 COG2518 Pcm Protein-L-isoaspar 86.4 3.3 7.2E-05 35.0 7.1 99 2-110 74-177 (209)
125 PLN02366 spermidine synthase 86.4 1.7 3.7E-05 37.6 5.4 94 2-101 93-204 (308)
126 PHA03412 putative methyltransf 86.3 1 2.2E-05 38.8 4.0 65 3-71 52-120 (241)
127 PRK14121 tRNA (guanine-N(7)-)- 86.2 4.9 0.00011 36.6 8.5 136 3-139 125-279 (390)
128 PF03141 Methyltransf_29: Puta 85.5 1.3 2.7E-05 42.2 4.6 105 2-110 119-226 (506)
129 PRK10901 16S rRNA methyltransf 84.3 1.5 3.2E-05 38.7 4.2 69 3-71 247-319 (427)
130 PTZ00338 dimethyladenosine tra 83.8 1.7 3.6E-05 37.3 4.2 78 3-87 39-122 (294)
131 TIGR00478 tly hemolysin TlyA f 83.5 0.64 1.4E-05 38.8 1.6 99 2-117 77-184 (228)
132 PF01564 Spermine_synth: Sperm 83.4 1.2 2.6E-05 36.9 3.1 108 2-115 78-204 (246)
133 PRK15128 23S rRNA m(5)C1962 me 83.3 2 4.2E-05 38.4 4.6 100 2-104 222-340 (396)
134 TIGR00446 nop2p NOL1/NOP2/sun 82.9 2.7 5.8E-05 34.6 4.9 65 3-71 74-146 (264)
135 PRK01581 speE spermidine synth 82.7 3.1 6.8E-05 38.0 5.7 95 2-102 152-267 (374)
136 PF05219 DREV: DREV methyltran 82.2 5 0.00011 35.4 6.6 96 2-107 96-193 (265)
137 KOG1270 Methyltransferases [Co 80.6 0.93 2E-05 40.4 1.6 79 2-85 91-180 (282)
138 PLN02589 caffeoyl-CoA O-methyl 80.2 3.4 7.3E-05 34.9 4.7 95 2-102 81-189 (247)
139 PF03848 TehB: Tellurite resis 80.1 5.2 0.00011 32.9 5.7 96 2-103 32-133 (192)
140 PRK15001 SAM-dependent 23S rib 79.6 8.9 0.00019 34.5 7.4 99 3-103 231-340 (378)
141 PLN02476 O-methyltransferase 76.3 3.9 8.4E-05 35.5 4.0 96 2-103 120-228 (278)
142 COG2227 UbiG 2-polyprenyl-3-me 75.3 4.4 9.5E-05 35.3 4.1 93 2-103 61-161 (243)
143 PF12147 Methyltransf_20: Puta 75.1 3.1 6.7E-05 37.6 3.2 77 66-142 210-294 (311)
144 PF00891 Methyltransf_2: O-met 74.9 24 0.00052 27.9 7.9 121 2-133 102-239 (241)
145 PRK11727 23S rRNA mA1618 methy 73.9 5.7 0.00012 35.0 4.5 67 3-71 117-195 (321)
146 PRK14902 16S rRNA methyltransf 73.5 6.9 0.00015 34.5 5.0 67 2-71 252-326 (444)
147 PF02562 PhoH: PhoH-like prote 70.1 11 0.00025 31.2 5.2 66 39-111 94-161 (205)
148 PRK14901 16S rRNA methyltransf 68.8 11 0.00023 33.5 5.1 65 3-71 255-331 (434)
149 PRK04338 N(2),N(2)-dimethylgua 67.3 11 0.00023 33.6 4.8 93 3-102 60-157 (382)
150 PRK04148 hypothetical protein; 67.2 9.5 0.00021 30.1 4.0 85 3-97 19-105 (134)
151 PF08655 DASH_Ask1: DASH compl 66.8 3.1 6.8E-05 29.9 1.2 15 124-138 45-59 (66)
152 KOG0820 Ribosomal RNA adenine 65.9 3.6 7.8E-05 37.4 1.6 155 2-162 60-261 (315)
153 KOG2793 Putative N2,N2-dimethy 64.1 12 0.00027 32.3 4.4 96 3-105 89-200 (248)
154 COG4123 Predicted O-methyltran 63.5 7.2 0.00016 33.7 3.0 69 2-71 46-121 (248)
155 PF05157 T2SE_Nter: Type II se 62.9 2.2 4.8E-05 28.9 -0.2 65 57-123 20-86 (109)
156 PRK00536 speE spermidine synth 62.0 45 0.00098 28.7 7.5 99 2-113 74-182 (262)
157 COG1352 CheR Methylase of chem 60.3 17 0.00038 31.4 4.7 49 55-104 193-241 (268)
158 PRK10611 chemotaxis methyltran 59.7 10 0.00022 32.8 3.3 42 63-104 221-262 (287)
159 PF00398 RrnaAD: Ribosomal RNA 56.5 24 0.00052 29.0 4.7 121 3-153 33-159 (262)
160 TIGR00308 TRM1 tRNA(guanine-26 55.7 11 0.00025 33.6 3.0 94 3-102 47-146 (374)
161 PF13506 Glyco_transf_21: Glyc 55.7 11 0.00024 29.4 2.6 39 64-105 30-68 (175)
162 PRK00440 rfc replication facto 52.0 77 0.0017 25.4 6.8 91 60-151 97-191 (319)
163 COG2230 Cfa Cyclopropane fatty 49.5 39 0.00084 29.9 5.2 96 2-103 74-176 (283)
164 PF10007 DUF2250: Uncharacteri 49.0 19 0.00041 27.1 2.7 37 7-54 19-55 (92)
165 PRK01710 murD UDP-N-acetylmura 48.8 48 0.001 29.2 5.7 103 2-106 15-127 (458)
166 PF01739 CheR: CheR methyltran 47.9 30 0.00066 28.1 4.0 45 60-104 131-175 (196)
167 TIGR00095 RNA methyltransferas 46.6 69 0.0015 25.4 5.8 32 2-33 51-82 (189)
168 COG5379 BtaA S-adenosylmethion 46.5 21 0.00045 33.5 3.2 41 63-103 325-366 (414)
169 COG0030 KsgA Dimethyladenosine 45.6 45 0.00097 29.0 4.9 81 3-91 33-120 (259)
170 PF02552 CO_dh: CO dehydrogena 45.5 47 0.001 27.2 4.8 73 36-112 50-147 (167)
171 PF13578 Methyltransf_24: Meth 45.0 7.9 0.00017 26.7 0.2 90 10-101 10-103 (106)
172 KOG1331 Predicted methyltransf 43.0 12 0.00027 33.5 1.2 70 27-97 60-136 (293)
173 PF03815 LCCL: LCCL domain; I 42.3 14 0.0003 27.2 1.1 28 21-50 31-58 (96)
174 PRK00440 rfc replication facto 41.1 9.6 0.00021 30.5 0.2 52 53-113 3-55 (319)
175 PRK07452 DNA polymerase III su 39.8 1.5E+02 0.0033 24.4 7.0 141 1-153 1-162 (326)
176 smart00603 LCCL LCCL domain. 39.7 23 0.0005 25.9 2.0 29 21-51 29-57 (85)
177 cd08815 Death_TNFRSF25_DR3 Dea 39.6 25 0.00054 26.1 2.1 22 127-148 11-32 (77)
178 TIGR01444 fkbM_fam methyltrans 39.6 21 0.00045 25.4 1.7 31 3-33 1-32 (143)
179 COG2018 Uncharacterized distan 39.1 21 0.00045 28.3 1.7 29 81-109 3-41 (119)
180 COG2126 RPL37A Ribosomal prote 39.1 14 0.0003 26.8 0.7 15 117-131 38-52 (61)
181 PF01558 POR: Pyruvate ferredo 38.9 42 0.00091 25.5 3.4 74 13-104 10-87 (173)
182 cd04149 Arf6 Arf6 subfamily. 38.8 28 0.0006 25.9 2.3 84 67-153 79-166 (168)
183 PF02887 PK_C: Pyruvate kinase 37.2 14 0.0003 26.8 0.5 31 25-55 57-95 (117)
184 PRK13256 thiopurine S-methyltr 37.1 95 0.0021 26.2 5.5 97 3-102 46-162 (226)
185 PRK12402 replication factor C 37.1 1.6E+02 0.0034 23.9 6.5 84 65-152 125-215 (337)
186 PF08346 AntA: AntA/AntB antir 36.9 25 0.00054 25.1 1.7 34 112-146 3-36 (71)
187 PF14035 YlzJ: YlzJ-like prote 36.2 13 0.00028 26.1 0.2 15 69-83 46-60 (66)
188 PRK06223 malate dehydrogenase; 36.1 1E+02 0.0023 25.4 5.5 110 1-113 2-129 (307)
189 PF12802 MarR_2: MarR family; 35.2 17 0.00037 22.8 0.6 26 25-53 29-54 (62)
190 PF08955 BofC_C: BofC C-termin 34.3 20 0.00044 26.4 1.0 16 93-108 15-31 (75)
191 PF03221 HTH_Tnp_Tc5: Tc5 tran 34.3 44 0.00095 21.1 2.4 35 106-140 25-63 (66)
192 COG1409 Icc Predicted phosphoh 34.3 35 0.00076 26.2 2.3 39 49-103 3-41 (301)
193 PF01630 Glyco_hydro_56: Hyalu 34.2 21 0.00046 32.3 1.2 31 73-103 274-304 (337)
194 TIGR03334 IOR_beta indolepyruv 33.3 66 0.0014 25.3 3.8 72 17-103 22-93 (189)
195 PRK04195 replication factor C 32.2 1.6E+02 0.0034 26.5 6.4 137 3-151 41-190 (482)
196 PRK07417 arogenate dehydrogena 32.2 1.3E+02 0.0028 24.8 5.4 90 3-106 2-95 (279)
197 cd03756 proteasome_alpha_arche 32.0 50 0.0011 26.1 2.9 65 67-132 39-111 (211)
198 CHL00181 cbbX CbbX; Provisiona 31.8 1.2E+02 0.0025 25.8 5.2 67 94-160 159-235 (287)
199 PF05762 VWA_CoxE: VWA domain 31.7 61 0.0013 26.2 3.4 57 65-122 150-210 (222)
200 PRK11340 phosphodiesterase Yae 31.6 1.1E+02 0.0023 25.4 4.9 52 50-103 35-88 (271)
201 PLN02672 methionine S-methyltr 31.0 40 0.00086 34.8 2.7 69 3-71 121-209 (1082)
202 PF04016 DUF364: Domain of unk 30.6 37 0.0008 26.3 1.9 26 81-106 72-98 (147)
203 PF01978 TrmB: Sugar-specific 30.3 53 0.0011 21.5 2.4 20 37-56 39-58 (68)
204 PRK04140 hypothetical protein; 30.1 50 0.0011 29.4 2.8 33 38-73 6-38 (317)
205 PF00176 SNF2_N: SNF2 family N 29.8 87 0.0019 24.4 3.9 64 89-152 156-220 (299)
206 COG3963 Phospholipid N-methylt 29.7 37 0.00081 29.2 1.9 96 3-104 51-157 (194)
207 cd08784 Death_DRs Death Domain 29.7 34 0.00073 24.1 1.4 19 125-143 9-27 (79)
208 PRK06035 3-hydroxyacyl-CoA deh 29.5 1.4E+02 0.0031 24.5 5.2 121 2-131 4-146 (291)
209 TIGR01082 murC UDP-N-acetylmur 29.2 2.2E+02 0.0048 25.0 6.6 94 6-106 6-109 (448)
210 PF01728 FtsJ: FtsJ-like methy 28.1 17 0.00036 27.5 -0.4 34 2-35 25-60 (181)
211 PF06144 DNA_pol3_delta: DNA p 28.1 2.1E+02 0.0045 20.9 5.4 87 67-153 59-156 (172)
212 KOG1499 Protein arginine N-met 27.5 73 0.0016 29.2 3.5 63 2-73 62-134 (346)
213 smart00751 BSD domain in trans 27.5 47 0.001 21.5 1.7 26 112-137 22-47 (51)
214 PF01479 S4: S4 domain; Inter 27.3 80 0.0017 19.3 2.7 21 38-58 16-36 (48)
215 PRK05629 hypothetical protein; 27.0 3.7E+02 0.0081 22.5 7.4 84 67-151 66-156 (318)
216 PRK05031 tRNA (uracil-5-)-meth 27.0 94 0.002 27.1 4.0 103 3-117 209-334 (362)
217 PRK14029 pyruvate/ketoisovaler 26.7 88 0.0019 24.7 3.4 85 1-103 1-97 (185)
218 COG2263 Predicted RNA methylas 26.6 45 0.00097 28.6 1.9 42 2-43 47-90 (198)
219 PF08123 DOT1: Histone methyla 26.5 89 0.0019 25.7 3.5 98 3-103 45-157 (205)
220 PRK14028 pyruvate ferredoxin o 26.0 89 0.0019 26.4 3.6 88 3-103 4-99 (312)
221 PF01232 Mannitol_dh: Mannitol 26.0 2.4E+02 0.0052 21.5 5.6 97 3-106 2-104 (151)
222 TIGR02480 fliN flagellar motor 25.8 16 0.00034 25.5 -0.8 30 83-112 37-66 (77)
223 cd00165 S4 S4/Hsp/ tRNA synthe 25.6 1.6E+02 0.0034 17.5 3.8 35 37-71 15-50 (70)
224 PRK03980 flap endonuclease-1; 25.3 53 0.0011 28.5 2.1 40 6-50 79-119 (292)
225 PRK10536 hypothetical protein; 25.1 83 0.0018 27.6 3.3 57 46-109 158-216 (262)
226 PRK11760 putative 23S rRNA C24 25.0 1.3E+02 0.0029 27.7 4.7 96 3-110 214-313 (357)
227 PRK12921 2-dehydropantoate 2-r 24.6 3.7E+02 0.0081 21.6 7.0 88 3-102 2-101 (305)
228 PF12738 PTCB-BRCT: twin BRCT 24.5 60 0.0013 20.8 1.8 53 98-155 2-54 (63)
229 PF12060 DUF3541: Domain of un 24.4 30 0.00066 30.3 0.5 31 78-108 41-73 (227)
230 PF12681 Glyoxalase_2: Glyoxal 24.3 65 0.0014 21.0 2.0 35 32-67 62-96 (108)
231 PF03808 Glyco_tran_WecB: Glyc 24.0 54 0.0012 25.6 1.8 34 79-112 86-119 (172)
232 cd06305 PBP1_methylthioribose_ 24.0 1.2E+02 0.0025 23.1 3.5 43 79-121 40-82 (273)
233 PRK06033 hypothetical protein; 23.9 17 0.00037 26.3 -0.9 30 83-112 36-65 (83)
234 KOG0781 Signal recognition par 23.2 61 0.0013 31.9 2.3 77 62-140 463-541 (587)
235 PF13137 DUF3983: Protein of u 23.1 51 0.0011 21.6 1.2 15 125-139 20-34 (34)
236 PRK04011 peptide chain release 22.7 26 0.00056 31.7 -0.2 64 72-136 41-130 (411)
237 PRK09111 DNA polymerase III su 22.7 2.7E+02 0.0059 26.7 6.4 84 66-152 133-222 (598)
238 PF11968 DUF3321: Putative met 22.6 84 0.0018 27.2 2.8 37 46-82 84-122 (219)
239 PRK11325 scaffold protein; Pro 22.3 19 0.00042 27.3 -0.9 40 75-115 70-109 (127)
240 COG4088 Predicted nucleotide k 22.2 49 0.0011 29.6 1.4 13 98-110 3-15 (261)
241 PF05185 PRMT5: PRMT5 arginine 22.2 79 0.0017 29.0 2.7 81 3-90 189-279 (448)
242 PF00149 Metallophos: Calcineu 21.8 1.6E+02 0.0035 18.8 3.4 19 85-103 21-39 (200)
243 cd05014 SIS_Kpsf KpsF-like pro 21.5 89 0.0019 21.9 2.3 16 4-19 3-18 (128)
244 PF14217 DUF4327: Domain of un 21.4 55 0.0012 23.9 1.3 20 32-51 2-21 (68)
245 PF01380 SIS: SIS domain SIS d 21.3 1.2E+02 0.0025 21.0 2.9 21 90-110 48-68 (131)
246 smart00363 S4 S4 RNA-binding d 21.3 1.8E+02 0.0039 16.8 3.3 21 37-57 15-35 (60)
247 PF01531 Glyco_transf_11: Glyc 20.8 2.1E+02 0.0046 24.1 4.8 59 67-136 208-267 (298)
248 TIGR01397 fliM_switch flagella 20.8 24 0.00052 29.8 -0.8 30 83-112 282-311 (320)
249 cd01911 proteasome_alpha prote 20.8 1.3E+02 0.0028 23.7 3.4 66 68-135 39-113 (209)
250 COG2519 GCD14 tRNA(1-methylade 20.7 3.2E+02 0.007 24.2 6.0 108 2-119 96-212 (256)
251 KOG2597 Predicted aminopeptida 20.7 33 0.00072 33.0 0.0 62 68-144 361-422 (513)
252 KOG0026 Anthranilate synthase, 20.7 50 0.0011 28.8 1.1 19 85-103 54-72 (223)
253 PRK06305 DNA polymerase III su 20.6 1.2E+02 0.0026 27.6 3.5 87 64-153 120-212 (451)
254 PF08735 DUF1786: Putative pyr 20.6 1.1E+02 0.0024 26.9 3.2 57 78-144 22-79 (254)
255 PRK00421 murC UDP-N-acetylmura 20.6 4.2E+02 0.0092 23.3 6.8 97 3-106 9-117 (461)
256 cd04186 GT_2_like_c Subfamily 20.6 2.3E+02 0.0049 19.3 4.1 88 65-167 74-165 (166)
257 PRK05808 3-hydroxybutyryl-CoA 20.3 2.5E+02 0.0055 22.9 5.0 122 1-131 3-143 (282)
No 1
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.31 E-value=1.5e-12 Score=107.31 Aligned_cols=142 Identities=23% Similarity=0.411 Sum_probs=107.4
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcc-eeeeeecCCCC-CCCCcccEEEEcccccccC
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPLP-YRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~-VRvadikfpLP-YR~KSFslVivSDaLdyLs 79 (171)
.+|||+|-|.+.....|.++.+.++.|||-. +.+..+-++||+ |-++|+...|+ |.++|||.||.|++|.++
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~GvEid-----~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~- 88 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYGVEID-----PDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV- 88 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEEEecC-----HHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH-
Confidence 4799999999999999999999999999954 345778899999 99999999997 999999999999999998
Q ss_pred hhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcCCCc--cccchhHHHHHHHHhccccchHHHHHHHHHHhhcc
Q 030814 80 PKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPA--KMRSSSWWIRYFVQTSLEENEPAVKKFEQAASKKS 157 (171)
Q Consensus 80 prylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfgr~a--k~RsssWW~r~F~q~~leeNea~~kkfeqa~~k~s 157 (171)
++-.+.|-|+.||+.++||-|.-+ |.=|....=+ --||-- +.=+-+|+. +-++- =-.++-||....+..
T Consensus 89 -~~P~~vL~EmlRVgr~~IVsFPNF-g~W~~R~~l~-~~GrmPvt~~lPy~WYd----TPNih--~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 89 -RRPDEVLEEMLRVGRRAIVSFPNF-GHWRNRLQLL-LRGRMPVTKALPYEWYD----TPNIH--LCTIKDFEDLCRELG 159 (193)
T ss_pred -hHHHHHHHHHHHhcCeEEEEecCh-HHHHHHHHHH-hcCCCCCCCCCCCcccC----CCCcc--cccHHHHHHHHHHCC
Confidence 677888999999999999887654 3333333322 224422 223567763 22221 234677777776654
Q ss_pred C
Q 030814 158 Y 158 (171)
Q Consensus 158 y 158 (171)
+
T Consensus 160 i 160 (193)
T PF07021_consen 160 I 160 (193)
T ss_pred C
Confidence 4
No 2
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.91 E-value=4.3e-09 Score=68.17 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=72.3
Q ss_pred eeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcc--eeeeeecCCCCCCCCcccEEEEcccccccChhh
Q 030814 5 LHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKY 82 (171)
Q Consensus 5 LHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~--VRvadikfpLPYR~KSFslVivSDaLdyLspry 82 (171)
|++|.|++.....|.+....+.+|+|++.- .-..|+...++.. ++.+|+ ..||+.+.|||+|+..+++.|+ +.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~--~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~sfD~v~~~~~~~~~--~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE--MLEQARKRLKNEGVSFRQGDA-EDLPFPDNSFDVVFSNSVLHHL--ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH--HHHHHHHHTTTSTEEEEESBT-TSSSS-TT-EEEEEEESHGGGS--SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH--HHHHHHhcccccCchheeehH-HhCccccccccccccccceeec--cC
Confidence 799999999999999887999999999864 3456777666554 889998 8889999999999999999999 88
Q ss_pred hhchhhhhhhhccCc
Q 030814 83 LNKTLPDLARVASDG 97 (171)
Q Consensus 83 lNkTlPeLaRvs~dg 97 (171)
..+.+-|+.||-+.|
T Consensus 76 ~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 76 PEAALREIYRVLKPG 90 (95)
T ss_dssp HHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHcCcC
Confidence 899999999987644
No 3
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.84 E-value=2.6e-08 Score=77.22 Aligned_cols=134 Identities=17% Similarity=0.129 Sum_probs=93.1
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcc-----eeeeeecCCCCCCCCcccEEEEccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~-----VRvadikfpLPYR~KSFslVivSDaLd 76 (171)
.+||++|-|++.+...|.+ .+.+..|||+.+-- .+.-.+.+-..+. ..++|+.. +| ++||+|+++|++.
T Consensus 57 ~~vLDiGcG~G~~~~~la~-~~~~v~gvD~s~~~-i~~a~~~~~~~~~~~~i~~~~~d~~~-~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAK-RGAIVKAVDISEQM-VQMARNRAQGRDVAGNVEFEVNDLLS-LC---GEFDIVVCMDVLI 130 (219)
T ss_pred CEEEEEeCCCCHHHHHHHH-CCCEEEEEECCHHH-HHHHHHHHHhcCCCCceEEEECChhh-CC---CCcCEEEEhhHHH
Confidence 3699999999999888875 45688999876422 2222223333332 45677743 45 8999999999999
Q ss_pred ccChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhh-cC-----CCccccchhHHHHHHHHhcccc
Q 030814 77 YLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSK-FG-----RPAKMRSSSWWIRYFVQTSLEE 141 (171)
Q Consensus 77 yLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elsk-fg-----r~ak~RsssWW~r~F~q~~lee 141 (171)
|+++..+.+++-++.|+...++++.....+........+.. |+ .++-..+..+|.+.+.++|++-
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 201 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKI 201 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCcee
Confidence 99998999999999999998888776644443322222222 22 2344567788999999888764
No 4
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.80 E-value=7.1e-09 Score=73.42 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=86.3
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccChh
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPK 81 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLspr 81 (171)
.+||++|+|++.....| ++.+.+..|+++++-. .+. +-.+.........+...++||+|+++++|+|+.
T Consensus 24 ~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~-- 92 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQM-IEK-------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP-- 92 (161)
T ss_dssp SEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHH-HHH-------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS--
T ss_pred CEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHH-Hhh-------hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc--
Confidence 37999999999877777 6777899999998644 111 222222221125556889999999999999999
Q ss_pred hhhchhhhhhhhccC-ceEEEecCCCc---chhhhhhhhhcC----CCccccchhHHHHHHHHhccccch
Q 030814 82 YLNKTLPDLARVASD-GVLIFAGYPGQ---QRAKVAELSKFG----RPAKMRSSSWWIRYFVQTSLEENE 143 (171)
Q Consensus 82 ylNkTlPeLaRvs~d-giVif~g~pgq---~~ak~~elskfg----r~ak~RsssWW~r~F~q~~leeNe 143 (171)
....+|-++.|+-+. |+++++- |.- ......+. .+. +-...-+..=|.+.|.++|++--|
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISD-PNRDDPSPRSFLKW-RYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEE-EBTTSHHHHHHHHC-CGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cHHHHHHHHHHhcCCCCEEEEEE-cCCcchhhhHHHhc-CCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 488999999998774 5555544 331 11112221 222 233566777889999999987644
No 5
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.79 E-value=1.6e-08 Score=80.27 Aligned_cols=97 Identities=20% Similarity=0.282 Sum_probs=77.1
Q ss_pred cceeecCCchhHhHhhhhc-ccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccChh
Q 030814 3 KVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPK 81 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke-e~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLspr 81 (171)
+||++|.||+.....|.+. .+.+..|||+++- +-..|+.....--+.++|+. . |+...+||+|+++.+|.|++|.
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~--~l~~A~~~~~~~~~~~~d~~-~-~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLLPFKHIYGVEINEY--AVEKAKAYLPNINIIQGSLF-D-PFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred cEEEEecCCCHHHHHHHHhCCCCeEEEEECCHH--HHHHHHhhCCCCcEEEeecc-C-CCCCCCEEEEEECChhhhCCHH
Confidence 6999999999999999865 4688999988752 22344443344457788884 4 8889999999999999999999
Q ss_pred hhhchhhhhhhhccCceEEEec
Q 030814 82 YLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 82 ylNkTlPeLaRvs~dgiVif~g 103 (171)
++.+.+-++.|++...++|.--
T Consensus 122 ~~~~~l~el~r~~~~~v~i~e~ 143 (204)
T TIGR03587 122 NLPTAYRELYRCSNRYILIAEY 143 (204)
T ss_pred HHHHHHHHHHhhcCcEEEEEEe
Confidence 9999999999999665555443
No 6
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.73 E-value=8.7e-08 Score=73.48 Aligned_cols=132 Identities=20% Similarity=0.284 Sum_probs=87.4
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcc-eeeeeecCCC-CCCCCcccEEEEcccccccCh
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPL-PYRAKSFPLVIVSDALDYLSP 80 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~-VRvadikfpL-PYR~KSFslVivSDaLdyLsp 80 (171)
+||++|.|++.+...|.+.....++|||+.+- .-..|+ ++|+ +.++|+.-.+ |+..++||+|+.+.+|.|+..
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~--~i~~a~---~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGIEIDQD--GVLACV---ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEEeCCHH--HHHHHH---HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 69999999999988777666667899987641 111222 2332 4467875545 488899999999999999853
Q ss_pred hhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhh--------c------CCCccccchhHHHHHHHHhccccc
Q 030814 81 KYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSK--------F------GRPAKMRSSSWWIRYFVQTSLEEN 142 (171)
Q Consensus 81 rylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elsk--------f------gr~ak~RsssWW~r~F~q~~leeN 142 (171)
..+.|-++.|+...+++.|..+.-.+ ....-+.+ + ..+++..+..++.+.+.++|++--
T Consensus 91 --~~~~l~e~~r~~~~~ii~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 91 --PEEILDEMLRVGRHAIVSFPNFGYWR-VRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred --HHHHHHHHHHhCCeEEEEcCChhHHH-HHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEE
Confidence 66789999999887766554332221 11110111 0 123456777888888888888753
No 7
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.51 E-value=9.8e-07 Score=67.45 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=66.6
Q ss_pred ccceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHhHhcce--eeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIV--RVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv~kG~V--RvadikfpLPYR~KSFslVivSDaLdy 77 (171)
.+||++|.|++.....|.+. +.+..|+|+.+ ++.+..++...-....+ .++| ++.-..+||+|+.++++.|
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d----~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD----LESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC----chhccCCcCEEEEcchhhc
Confidence 37999999999988888754 45688888753 22233332221110123 3345 4445689999999999999
Q ss_pred cChhhhhchhhhhhhhccCceEEE
Q 030814 78 LSPKYLNKTLPDLARVASDGVLIF 101 (171)
Q Consensus 78 LsprylNkTlPeLaRvs~dgiVif 101 (171)
.+...+...+-+|.|+...+++|.
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEE
Confidence 999999999999999887766654
No 8
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.45 E-value=6.4e-07 Score=77.20 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=94.8
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHh---Hhcceeeeeec-CCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLV---HKGIVRVADIK-FPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv---~kG~VRvadik-fpLPYR~KSFslVivSDaLdy 77 (171)
.+||++|.|++.+...|.+. ..+..|||+.+-- ++. ++.+- ..-.+..+|+. ..+|+-..+||+|+++.+|.|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~-l~~-a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK-AGQVIALDFIESV-IKK-NESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHH-HHH-HHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 36999999999998888754 6688999986532 222 22221 11234557763 356777889999999999999
Q ss_pred cChhhhhchhhhhhhhcc-CceEEEecCCCcchhhhhhhhhcCCCccccchhHHHHHHHHhccccc
Q 030814 78 LSPKYLNKTLPDLARVAS-DGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEEN 142 (171)
Q Consensus 78 LsprylNkTlPeLaRvs~-dgiVif~g~pgq~~ak~~elskfgr~ak~RsssWW~r~F~q~~leeN 142 (171)
+++..+.+.+-++.|+-+ +|+++|.-...-+. .++..-..|-..|+..||.+.|.+.|+..-
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCFHQS---GDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC---CcccccCCCCeecChHHHHHHHHHheeccC
Confidence 999989999999999755 66776654322111 123333456667888999999999887654
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=98.37 E-value=3.6e-06 Score=71.26 Aligned_cols=134 Identities=22% Similarity=0.373 Sum_probs=91.4
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHh-cc-----eeeeeecCCCCCCCCcccEEEEcccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI-----VRVADIKFPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~k-G~-----VRvadikfpLPYR~KSFslVivSDaL 75 (171)
.+|||||-|++.....|.+.-+.+.-||++.+.- -..|+.+.++ |+ +.++|+ ..+|+.+.+||+|++.+++
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~--i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQ--AARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHH--HHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECCch
Confidence 3699999999998888876557788899876532 2334444432 32 456888 7889999999999999999
Q ss_pred cccChhhhhchhhhhhhhccC-ceEEEecC------CCcc------hhhhhhhh-hcCCCccccchhHHHHHHHHhcccc
Q 030814 76 DYLSPKYLNKTLPDLARVASD-GVLIFAGY------PGQQ------RAKVAELS-KFGRPAKMRSSSWWIRYFVQTSLEE 141 (171)
Q Consensus 76 dyLsprylNkTlPeLaRvs~d-giVif~g~------pgq~------~ak~~els-kfgr~ak~RsssWW~r~F~q~~lee 141 (171)
.|+.. ..+.+-|+.|+-+. |.++++.. |+.. +.-+..+. .+.-| ...+...|.+.+.++|++.
T Consensus 197 ~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p-~~~s~~~~~~~l~~aGf~~ 273 (340)
T PLN02244 197 EHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLP-AWCSTSDYVKLAESLGLQD 273 (340)
T ss_pred hccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHCCCCe
Confidence 99964 35788899998775 66665432 2211 11111211 12222 3457889999999999764
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.27 E-value=2.8e-06 Score=69.39 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=90.9
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhH-hcce--eeeeecCCCCCCCCcccEEEEccccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVH-KGIV--RVADIKFPLPYRAKSFPLVIVSDALDYL 78 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~-kG~V--RvadikfpLPYR~KSFslVivSDaLdyL 78 (171)
.+||++|.|+......|.+.-+.+..||++.+- .-..++.... ...| ..+|+ ..+|+...+||+|++.|++-|+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~--~~~~a~~~~~~~~~i~~~~~D~-~~~~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKYGAHVHGVDICEK--MVNIAKLRNSDKNKIEFEANDI-LKKDFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhcCCEEEEEECCHH--HHHHHHHHcCcCCceEEEECCc-ccCCCCCCCeEEEEEhhhHHhC
Confidence 379999999998877776544567888887642 1122332222 2233 45777 5788989999999999999999
Q ss_pred Chhhhhchhhhhhhh-ccCceEEEecCCCc----chhhhhhhhhcCCCccccchhHHHHHHHHhcccc
Q 030814 79 SPKYLNKTLPDLARV-ASDGVLIFAGYPGQ----QRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEE 141 (171)
Q Consensus 79 sprylNkTlPeLaRv-s~dgiVif~g~pgq----~~ak~~elskfgr~ak~RsssWW~r~F~q~~lee 141 (171)
++....+.+-++.|+ ...|.++++.+.-. -.....+..+ .+...+.+...+.+.+.++|++.
T Consensus 131 ~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGF~~ 197 (263)
T PTZ00098 131 SYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIK-KRKYTLIPIQEYGDLIKSCNFQN 197 (263)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHH-hcCCCCCCHHHHHHHHHHCCCCe
Confidence 877888999999997 45677777764211 1111111111 12335667788899999999865
No 11
>PRK06202 hypothetical protein; Provisional
Probab=98.26 E-value=1.7e-06 Score=67.84 Aligned_cols=96 Identities=22% Similarity=0.164 Sum_probs=68.0
Q ss_pred cceeecCCchhHhHhhhhc---c--cccccccccccccchhHHHHHHhH-hc-ceeeeeecCCCCCCCCcccEEEEcccc
Q 030814 3 KVLHVGPDTCSVVSTLLKE---E--ETEAWGVEPYDIEDADARCKSLVH-KG-IVRVADIKFPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke---e--~teAWGVEPyd~~d~d~~CksLv~-kG-~VRvadikfpLPYR~KSFslVivSDaL 75 (171)
+||++|-||+.+...|.+. . +.+..||++++- .-..|+.... .| -+++.|. -.+|..+.+||+|+++.+|
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~-~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR--AVAFARANPRRPGVTFRQAVS-DELVAEGERFDVVTSNHFL 139 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH--HHHHHHhccccCCCeEEEEec-ccccccCCCccEEEECCee
Confidence 6999999999987776542 1 247899988752 2233333332 22 2344443 2345567899999999999
Q ss_pred cccChhhhhchhhhhhhhccCceEEE
Q 030814 76 DYLSPKYLNKTLPDLARVASDGVLIF 101 (171)
Q Consensus 76 dyLsprylNkTlPeLaRvs~dgiVif 101 (171)
.|+.+.++.+.|-++.|+...+++|.
T Consensus 140 hh~~d~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 140 HHLDDAEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred ecCChHHHHHHHHHHHHhcCeeEEEe
Confidence 99999999999999999998555544
No 12
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.22 E-value=9.6e-06 Score=63.96 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=70.7
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccChh
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPK 81 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLspr 81 (171)
.+||++|-||+.+...|. +.+.+..|++++. +.-..|+.....-.+.++|+ ..+|+...+||+|+++.++.++.
T Consensus 44 ~~vLDiGcG~G~~~~~l~-~~~~~v~~~D~s~--~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~~~~-- 117 (251)
T PRK10258 44 THVLDAGCGPGWMSRYWR-ERGSQVTALDLSP--PMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQWCG-- 117 (251)
T ss_pred CeEEEeeCCCCHHHHHHH-HcCCeEEEEECCH--HHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhhhcC--
Confidence 369999999987665554 5667888988764 22233443332224567888 56889889999999999998864
Q ss_pred hhhchhhhhhhhccC-ceEEEecC
Q 030814 82 YLNKTLPDLARVASD-GVLIFAGY 104 (171)
Q Consensus 82 ylNkTlPeLaRvs~d-giVif~g~ 104 (171)
.+.++|.++.|+-+. |+++|+.+
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 467899999998765 77777754
No 13
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.20 E-value=1.2e-05 Score=60.49 Aligned_cols=96 Identities=28% Similarity=0.350 Sum_probs=66.8
Q ss_pred cceeecCCchhHhHhhhhcc-cccccccccccccchhHHHHHHhHh-cceeeeeecCCCCCCCCcccEEEEcccccccCh
Q 030814 3 KVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHK-GIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 80 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~~d~d~~CksLv~k-G~VRvadikfpLPYR~KSFslVivSDaLdyLsp 80 (171)
+||++|.|++.....|.+.. .....|+++... .-..++..... -.+.++|+ ..+|+-..+||+||.+.++.|+..
T Consensus 37 ~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~--~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 37 SVLDIGCGTGYLTRALLKRFPQAEFIALDISAG--MLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred eEEEECCCccHHHHHHHHhCCCCcEEEEeChHH--HHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhccC
Confidence 69999999999888777543 233478887532 22233333221 23456787 467877889999999999999843
Q ss_pred hhhhchhhhhhhhcc-CceEEEec
Q 030814 81 KYLNKTLPDLARVAS-DGVLIFAG 103 (171)
Q Consensus 81 rylNkTlPeLaRvs~-dgiVif~g 103 (171)
..+.|.++.|+-+ +|.++++.
T Consensus 114 --~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 114 --LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --HHHHHHHHHHHcCCCcEEEEEe
Confidence 5678899888655 67777665
No 14
>PRK05785 hypothetical protein; Provisional
Probab=98.20 E-value=6e-06 Score=66.32 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=71.6
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccChh
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPK 81 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLspr 81 (171)
.+||++|-||+.+...|.+..+.+..|||+++-- .+ .++ +++-..++|. ..||+.+.|||+|+++.+|.++.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~M-l~-~a~---~~~~~~~~d~-~~lp~~d~sfD~v~~~~~l~~~~-- 124 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVALDYAENM-LK-MNL---VADDKVVGSF-EALPFRDKSFDVVMSSFALHASD-- 124 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHH-HH-HHH---hccceEEech-hhCCCCCCCEEEEEecChhhccC--
Confidence 3799999999988777765435789999986421 11 122 1233456777 67899999999999999998875
Q ss_pred hhhchhhhhhhhccCce-EEEecCCC
Q 030814 82 YLNKTLPDLARVASDGV-LIFAGYPG 106 (171)
Q Consensus 82 ylNkTlPeLaRvs~dgi-Vif~g~pg 106 (171)
.+.+.|-|+.||.+..+ ++-.+.|.
T Consensus 125 d~~~~l~e~~RvLkp~~~ile~~~p~ 150 (226)
T PRK05785 125 NIEKVIAEFTRVSRKQVGFIAMGKPD 150 (226)
T ss_pred CHHHHHHHHHHHhcCceEEEEeCCCC
Confidence 35789999999999765 55556664
No 15
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.20 E-value=8.6e-06 Score=62.64 Aligned_cols=134 Identities=15% Similarity=0.216 Sum_probs=83.3
Q ss_pred ccceeecCCchhHhHhhhhcc-cccccccccccc--cchhHHHHHHhHhc--ceeeeeecCCCCCCCCcccEEEEccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDI--EDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~--~d~d~~CksLv~kG--~VRvadikfpLPYR~KSFslVivSDaLd 76 (171)
++||++|.|++.....+.+.- +.+..|+++.+- +.+..+++..--.+ -+..+|+ ...|+ +.+||+|++...+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~-~~~~~-~~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS-AKDPF-PDTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc-ccCCC-CCCCCEeehHHHHH
Confidence 479999999999888887654 457788887431 22333332210112 3455677 23355 35899999999999
Q ss_pred ccChhhhhchhhhhhhh-ccCceEEEecCCCcchhhhhhhhhcCCCccccchhHHHHHHHHhccccc
Q 030814 77 YLSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEEN 142 (171)
Q Consensus 77 yLsprylNkTlPeLaRv-s~dgiVif~g~pgq~~ak~~elskfgr~ak~RsssWW~r~F~q~~leeN 142 (171)
++.. ....+.++.|+ ..+|.++++....+....... .+ ...-+.+...|.+.+.++|++-.
T Consensus 79 ~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 79 HIKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEH--EE-TTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred hCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccc--cc-cccccCCHHHHHHHHHHCCCeEE
Confidence 9854 46778888774 667788877642221111110 01 11115677889999999998654
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.14 E-value=1e-05 Score=69.86 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=87.0
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhH----hcceeeeeecCCCCCCCCcccEEEEccccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVH----KGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 78 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~----kG~VRvadikfpLPYR~KSFslVivSDaLdyL 78 (171)
+||+||.|++.+...|.+.-+.+..||++++- +-..|+.-.. .--+.++|+ +.+|+...+||+|++.+++.|+
T Consensus 269 ~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~--~l~~A~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~I~s~~~l~h~ 345 (475)
T PLN02336 269 KVLDVGCGIGGGDFYMAENFDVHVVGIDLSVN--MISFALERAIGRKCSVEFEVADC-TKKTYPDNSFDVIYSRDTILHI 345 (475)
T ss_pred EEEEEeccCCHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHhhcCCCceEEEEcCc-ccCCCCCCCEEEEEECCccccc
Confidence 69999999998887777666778999999742 2222322221 112456887 5678888899999999999999
Q ss_pred ChhhhhchhhhhhhhccC-ceEEEecC------CCcchhhhhhhhhcCCCccccchhHHHHHHHHhcccc
Q 030814 79 SPKYLNKTLPDLARVASD-GVLIFAGY------PGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEE 141 (171)
Q Consensus 79 sprylNkTlPeLaRvs~d-giVif~g~------pgq~~ak~~elskfgr~ak~RsssWW~r~F~q~~lee 141 (171)
... -+.+.++.|+-+. |.++++.+ |+.... ..+.+.|. .+.+...+.+.+.++|++.
T Consensus 346 ~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~~g~--~~~~~~~~~~~l~~aGF~~ 409 (475)
T PLN02336 346 QDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA--EYIKQRGY--DLHDVQAYGQMLKDAGFDD 409 (475)
T ss_pred CCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH--HHHHhcCC--CCCCHHHHHHHHHHCCCee
Confidence 643 3678899998654 55555432 121111 12233332 4677888899999988774
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.08 E-value=2.1e-05 Score=62.93 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=64.7
Q ss_pred cceeecCCchhHhHhhhhccccccccccccc-c-cchhHHHHHHhHhcc-----eeeeeecCCCCCCCCcccEEEEcccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYD-I-EDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd-~-~d~d~~CksLv~kG~-----VRvadikfpLPYR~KSFslVivSDaL 75 (171)
+||++|.|++.....|.+ .+.+..|||+++ + +-+..+|+ +.|+ +..+|+.--.|+-..+||+|+..++|
T Consensus 47 ~vLDiGcG~G~~a~~la~-~g~~v~~vD~s~~~l~~a~~~~~---~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 47 RVLDAGGGEGQTAIKLAE-LGHQVILCDLSAEMIQRAKQAAE---AKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred EEEEeCCCchHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHH---hcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 699999999998888875 578899999874 2 22333333 2342 44566633224556899999999999
Q ss_pred cccChhhhhchhhhhhhhccC-ceEEEe
Q 030814 76 DYLSPKYLNKTLPDLARVASD-GVLIFA 102 (171)
Q Consensus 76 dyLsprylNkTlPeLaRvs~d-giVif~ 102 (171)
.|+.... +.+.++.|+-+. |+++++
T Consensus 123 ~~~~~~~--~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 123 EWVADPK--SVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HhhCCHH--HHHHHHHHHcCCCeEEEEE
Confidence 9996432 678888887655 454443
No 18
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.08 E-value=2.4e-05 Score=67.19 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=85.9
Q ss_pred cceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHhH------hcceeeeeecCCCCCCCCcccEEEEccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVH------KGIVRVADIKFPLPYRAKSFPLVIVSDA 74 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv~------kG~VRvadikfpLPYR~KSFslVivSDa 74 (171)
+|||+|-||+.+--.|.+ .+.+..||+.++ ++.+..+.+.... ..-..++|+.. + ..+||+|+.+|+
T Consensus 147 ~VLDlGcGtG~~a~~la~-~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l---~~~fD~Vv~~~v 221 (315)
T PLN02585 147 TVCDAGCGTGSLAIPLAL-EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-L---SGKYDTVTCLDV 221 (315)
T ss_pred EEEEecCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-c---CCCcCEEEEcCE
Confidence 799999999998877775 467889998876 2334444443311 12234566532 2 588999999999
Q ss_pred ccccChhhhhchhhhhhhhccCceEEEecCCCcch----hhhhhhhhcCCCc-----cccchhHHHHHHHHhcccc
Q 030814 75 LDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQR----AKVAELSKFGRPA-----KMRSSSWWIRYFVQTSLEE 141 (171)
Q Consensus 75 LdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~----ak~~elskfgr~a-----k~RsssWW~r~F~q~~lee 141 (171)
|.|+....+.+.+-.++++...+++| +-.|...- .++.+ .|+.|. -+.+...+.+.+.++|++-
T Consensus 222 L~H~p~~~~~~ll~~l~~l~~g~liI-s~~p~~~~~~~l~~~g~--~~~g~~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASLAEKRLII-SFAPKTLYYDILKRIGE--LFPGPSKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred EEecCHHHHHHHHHHHHhhcCCEEEE-EeCCcchHHHHHHHHHh--hcCCCCcCceeeeCCHHHHHHHHHHCCCEE
Confidence 99998877778888888887666654 33444221 12222 243332 2346777888888888764
No 19
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.00 E-value=5.3e-06 Score=57.16 Aligned_cols=91 Identities=29% Similarity=0.345 Sum_probs=68.3
Q ss_pred ceeecCCchhHhHhhhhcc----cccccccccccccchhHHHHHHhH-hc---ceeeeeecCCCCCCCCcccEEEEccc-
Q 030814 4 VLHVGPDTCSVVSTLLKEE----ETEAWGVEPYDIEDADARCKSLVH-KG---IVRVADIKFPLPYRAKSFPLVIVSDA- 74 (171)
Q Consensus 4 VLHvGP~tC~vVs~llkee----~teAWGVEPyd~~d~d~~CksLv~-kG---~VRvadikfpLPYR~KSFslVivSDa- 74 (171)
||++|.|++.....|.+-- ....+||+..+-- + ..|+...+ .| -..++|+ ..||+...+||+|+.+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~-l-~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEM-L-ELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHH-H-HHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHH-H-HHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCc
Confidence 7999999999999988652 3788898876432 2 34555553 33 5688999 559999999999999766
Q ss_pred ccccChhhhhchhhhhhhhccCc
Q 030814 75 LDYLSPKYLNKTLPDLARVASDG 97 (171)
Q Consensus 75 LdyLsprylNkTlPeLaRvs~dg 97 (171)
+.|++|+.+-+-+-+++|+.+.|
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999987643
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.98 E-value=5e-05 Score=65.39 Aligned_cols=136 Identities=16% Similarity=0.134 Sum_probs=82.9
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchh-HHHHHHh-Hhccee--eeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDAD-ARCKSLV-HKGIVR--VADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d-~~CksLv-~kG~VR--vadikfpLPYR~KSFslVivSDaLdy 77 (171)
++||+||-||+.....|++.......||+|++.--.. ..++.+. ..+.+. ..|+ -.+|.. .+||+|++..+|.|
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i-e~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGI-EQLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCH-HHCCCC-CCcCEEEEcchhhc
Confidence 4799999999999999987766679999998843111 1222222 223333 3344 234543 48999999999999
Q ss_pred cChhhhhchhhhhhhhcc-CceEEEec--CCCcchhhh---hhhhhcCCCccccchhHHHHHHHHhcccc
Q 030814 78 LSPKYLNKTLPDLARVAS-DGVLIFAG--YPGQQRAKV---AELSKFGRPAKMRSSSWWIRYFVQTSLEE 141 (171)
Q Consensus 78 LsprylNkTlPeLaRvs~-dgiVif~g--~pgq~~ak~---~elskfgr~ak~RsssWW~r~F~q~~lee 141 (171)
+ +.....|-++.|+-+ .|.+++.. ..|...... ....|+....-+.|.....+.+.++|++.
T Consensus 201 ~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 201 R--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred c--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeE
Confidence 8 345678999999654 56766543 233222111 01122222222335666677777777654
No 21
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.96 E-value=3.9e-05 Score=57.45 Aligned_cols=97 Identities=25% Similarity=0.272 Sum_probs=65.6
Q ss_pred cceeecCCchhHhHhhhhcccc--cccccccccccchhHHHHHHhH---hcceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEET--EAWGVEPYDIEDADARCKSLVH---KGIVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~t--eAWGVEPyd~~d~d~~CksLv~---kG~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
.||++|.|++.....+++.... ...|+|+.+- .-..|+.... .-.+..+|+ ..+|+...+||+|+.+..+.+
T Consensus 42 ~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~--~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 42 KVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE--MLEVAKKKSELPLNIEFIQADA-EALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred eEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH--HHHHHHHHhccCCCceEEecch-hcCCCCCCcEEEEEEeeeeCC
Confidence 6899999999988888766553 6788887431 2223333221 224556777 567888889999999988877
Q ss_pred cChhhhhchhhhhhhh-ccCceEEEecC
Q 030814 78 LSPKYLNKTLPDLARV-ASDGVLIFAGY 104 (171)
Q Consensus 78 LsprylNkTlPeLaRv-s~dgiVif~g~ 104 (171)
+.. +-..+-++.++ ..+|.+++.++
T Consensus 119 ~~~--~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 119 VTD--IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred ccc--HHHHHHHHHHHcCCCcEEEEEEe
Confidence 643 44566666664 55788887764
No 22
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.93 E-value=0.00015 Score=57.16 Aligned_cols=96 Identities=17% Similarity=0.289 Sum_probs=71.2
Q ss_pred cceeecCCchhHhHhhhhc---ccccccccccccccchhHHHHHHhHh-c-----ceeeeeecCCCCCCCCcccEEEEcc
Q 030814 3 KVLHVGPDTCSVVSTLLKE---EETEAWGVEPYDIEDADARCKSLVHK-G-----IVRVADIKFPLPYRAKSFPLVIVSD 73 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke---e~teAWGVEPyd~~d~d~~CksLv~k-G-----~VRvadikfpLPYR~KSFslVivSD 73 (171)
+||++|.|+......|++. .+.+..|||+++ +.-..|+..++. | .+..+|+ ..+|.. +||+|+++.
T Consensus 56 ~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 56 NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCNDI-RHVEIK--NASMVILNF 130 (239)
T ss_pred EEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECCh-hhCCCC--CCCEEeeec
Confidence 6999999999988877763 467899999865 233344444332 2 3556777 455653 599999999
Q ss_pred cccccChhhhhchhhhhhhhcc-CceEEEec
Q 030814 74 ALDYLSPKYLNKTLPDLARVAS-DGVLIFAG 103 (171)
Q Consensus 74 aLdyLsprylNkTlPeLaRvs~-dgiVif~g 103 (171)
+|.|+++....+.+.++.|+-+ +|.++++.
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 9999999888899999999865 67766664
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.88 E-value=9.1e-05 Score=62.96 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=69.8
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHH-HHhH---hcceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCK-SLVH---KGIVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~Ck-sLv~---kG~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
++||+||-|++.....|++.......||+|+...-...+.. .... +-.+..+|+ ..+|+ ..+||+|++..+|.|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~-e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI-EQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH-HHCCC-cCCcCEEEECChhhc
Confidence 47999999999999999977666799999987642222211 1111 122445566 56788 889999999999999
Q ss_pred cChhhhhchhhhhhhhc-cCceEEEec
Q 030814 78 LSPKYLNKTLPDLARVA-SDGVLIFAG 103 (171)
Q Consensus 78 LsprylNkTlPeLaRvs-~dgiVif~g 103 (171)
+. .....|-++.|+- .+|.+|+..
T Consensus 202 ~~--dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 202 RR--SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEE
Confidence 74 2356788888874 567777654
No 24
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.82 E-value=1.2e-05 Score=54.63 Aligned_cols=91 Identities=25% Similarity=0.311 Sum_probs=48.9
Q ss_pred eeecCCchhHhHhhhhc-ccccccccccccc--cchhHHHHHHhHhc--ceeeeeecCCCCCCCCcccEEEEcccccccC
Q 030814 5 LHVGPDTCSVVSTLLKE-EETEAWGVEPYDI--EDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 5 LHvGP~tC~vVs~llke-e~teAWGVEPyd~--~d~d~~CksLv~kG--~VRvadikfpLPYR~KSFslVivSDaLdyLs 79 (171)
|++|+||+.....|+++ ...+-.|++++.- +.+...-...-... .++........+.-.++||+|+++.+|.|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999966 5788889887753 33444444444333 233333322223333799999999999999
Q ss_pred hhhhhchhhhhhhhccCc
Q 030814 80 PKYLNKTLPDLARVASDG 97 (171)
Q Consensus 80 prylNkTlPeLaRvs~dg 97 (171)
+.+...+-.+.++-+.|
T Consensus 80 -~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS
T ss_pred -hhHHHHHHHHHHHcCCC
Confidence 55667776666655443
No 25
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.75 E-value=0.00012 Score=64.07 Aligned_cols=129 Identities=18% Similarity=0.233 Sum_probs=81.3
Q ss_pred cceeecCCchhHhHhhhhc-ccccccccccccccchhHHHHHHhH-hc-ceeeeeecCCCCCCCCcccEEEEcccccccC
Q 030814 3 KVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVH-KG-IVRVADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke-e~teAWGVEPyd~~d~d~~CksLv~-kG-~VRvadikfpLPYR~KSFslVivSDaLdyLs 79 (171)
+||++|.||..+...+.+. .+.+..||++.+-- -..++.... .+ -+..+|+ ..+|+...+||+||++++|.|+.
T Consensus 116 ~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~m--L~~A~~k~~~~~i~~i~gD~-e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 116 KVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ--LAKAKQKEPLKECKIIEGDA-EDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred EEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHH--HHHHHHhhhccCCeEEeccH-HhCCCCCCceeEEEEcChhhhCC
Confidence 6999999998877776654 34678888875321 112222111 11 2456777 56888899999999999999876
Q ss_pred hhhhhchhhhhhhhcc-CceEEEecC--CCcchhhhhhhhhcCCC--ccccchhHHHHHHHHhccccc
Q 030814 80 PKYLNKTLPDLARVAS-DGVLIFAGY--PGQQRAKVAELSKFGRP--AKMRSSSWWIRYFVQTSLEEN 142 (171)
Q Consensus 80 prylNkTlPeLaRvs~-dgiVif~g~--pgq~~ak~~elskfgr~--ak~RsssWW~r~F~q~~leeN 142 (171)
.. .++|-|+.|+-+ +|.+++++. |... ++++-.. ....+...+.+.+.++|+++-
T Consensus 193 d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~------~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 193 DP--QRGIKEAYRVLKIGGKACLIGPVHPTFW------LSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred CH--HHHHHHHHHhcCCCcEEEEEEecCcchh------HHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 54 368999999755 677777763 3211 1111000 012356677777888877753
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.75 E-value=0.00013 Score=62.84 Aligned_cols=97 Identities=10% Similarity=0.053 Sum_probs=66.9
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHh-c-----ceeeeeecCCCCCCCCcccEEEEccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-G-----IVRVADIKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~k-G-----~VRvadikfpLPYR~KSFslVivSDaLd 76 (171)
+||+||-|++.....|. ..+.+.+|||+.+-- -..++.-.+. + .+..+|+ ..+|....+||+|+..++|+
T Consensus 134 ~ILDIGCG~G~~s~~La-~~g~~V~GID~s~~~--i~~Ar~~~~~~~~~~~i~~~~~da-e~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLA-RMGATVTGVDAVDKN--VKIARLHADMDPVTSTIEYLCTTA-EKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred EEEEeeCCCCHHHHHHH-HcCCEEEEEeCCHHH--HHHHHHHHHhcCcccceeEEecCH-HHhhhccCCCCEEEEhhHHH
Confidence 69999999999765554 567789999998521 1222222221 1 1345565 45777788999999999999
Q ss_pred ccChhhhhchhhhhhhhccCceEEEecCC
Q 030814 77 YLSPKYLNKTLPDLARVASDGVLIFAGYP 105 (171)
Q Consensus 77 yLsprylNkTlPeLaRvs~dgiVif~g~p 105 (171)
|+... ...|.++.|+-+.|=.+++..+
T Consensus 210 Hv~d~--~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 210 HVANP--AEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hcCCH--HHHHHHHHHHcCCCcEEEEEEC
Confidence 99753 5799999998755544554443
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.75 E-value=0.00022 Score=57.27 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=84.5
Q ss_pred cceeecCCchhHhHhhhh---cccccccccccccccchhHHHHHHhH-hc-----ceeeeeecCCCCCCCCcccEEEEcc
Q 030814 3 KVLHVGPDTCSVVSTLLK---EEETEAWGVEPYDIEDADARCKSLVH-KG-----IVRVADIKFPLPYRAKSFPLVIVSD 73 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llk---ee~teAWGVEPyd~~d~d~~CksLv~-kG-----~VRvadikfpLPYR~KSFslVivSD 73 (171)
+||++|.||+.....|++ ..+.+..|||+++-- -..|+..+. .| -+..+|+ ..+|+. +||+|+++-
T Consensus 59 ~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~m--l~~A~~~~~~~~~~~~v~~~~~d~-~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 59 QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAM--IERCRRHIDAYKAPTPVDVIEGDI-RDIAIE--NASMVVLNF 133 (247)
T ss_pred EEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHH--HHHHHHHHHhcCCCCCeEEEeCCh-hhCCCC--CCCEEehhh
Confidence 699999999998777765 356789999986522 223333332 22 2345666 455653 599999999
Q ss_pred cccccChhhhhchhhhhhhhcc-CceEEEec-CCCcchhhhhhhhhcCCCccccchhHHHHHHHHhccccchHHH
Q 030814 74 ALDYLSPKYLNKTLPDLARVAS-DGVLIFAG-YPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPAV 146 (171)
Q Consensus 74 aLdyLsprylNkTlPeLaRvs~-dgiVif~g-~pgq~~ak~~elskfgr~ak~RsssWW~r~F~q~~leeNea~~ 146 (171)
+|.|+.+....+.+.++.|+-+ +|+++++. +.... ..+.++ .-..|..+-.+.|..+.|-..
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~-~~~~~~----------~~~~~~~~~~~~g~s~~ei~~ 197 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFED-AKVGEL----------LFNMHHDFKRANGYSELEISQ 197 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCc-chhHHH----------HHHHHHHHHHHcCCCHHHHHH
Confidence 9999999888899999999865 56666665 43332 222222 123466666677777666544
No 28
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.73 E-value=9.8e-05 Score=45.91 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=64.9
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHH-----hHhcceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSL-----VHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksL-----v~kG~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
++|++|+|++.....+++....+.+|+|+.+.- . ..++.. .....+...|+.-..+....+||+|+....+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVA-L-ELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHH-H-HHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 589999999999888887577888888875422 1 122211 122334456664444446788999999999988
Q ss_pred cChhhhhchhhhhhh-hccCceEEEe
Q 030814 78 LSPKYLNKTLPDLAR-VASDGVLIFA 102 (171)
Q Consensus 78 LsprylNkTlPeLaR-vs~dgiVif~ 102 (171)
+ +......+-.+.+ +..+|+++++
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 6 5566666666554 4567787776
No 29
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.69 E-value=0.00021 Score=55.25 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=65.7
Q ss_pred cceeecCCchhHhHhhhhc--ccccccccccccc--cchhHHHHHHhHhc-ceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDI--EDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~--~d~d~~CksLv~kG-~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
+||++|-||+.....|.+. .+.+..|||+.+- +-+..+++..-... -+..+|+ ..+|+...+||+|+.+..+.+
T Consensus 48 ~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~~l~~ 126 (231)
T TIGR02752 48 SALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA-MELPFDDNSFDYVTIGFGLRN 126 (231)
T ss_pred EEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech-hcCCCCCCCccEEEEeccccc
Confidence 7999999999988888754 3468899998642 22333333211111 2344676 567888899999999999988
Q ss_pred cChhhhhchhhhhhhhccC-ceEEEe
Q 030814 78 LSPKYLNKTLPDLARVASD-GVLIFA 102 (171)
Q Consensus 78 LsprylNkTlPeLaRvs~d-giVif~ 102 (171)
++. ..+.|-++.|+-+. |.+++.
T Consensus 127 ~~~--~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 127 VPD--YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CCC--HHHHHHHHHHHcCcCeEEEEE
Confidence 753 35788888887665 555543
No 30
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.68 E-value=0.00017 Score=54.52 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=65.2
Q ss_pred cceeecCCchhHhHhhhhcc--ccccccccccc--ccchhHHHHH--HhHhcceeeeeecCCCCCCCCcccEEEEccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYD--IEDADARCKS--LVHKGIVRVADIKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee--~teAWGVEPyd--~~d~d~~Cks--Lv~kG~VRvadikfpLPYR~KSFslVivSDaLd 76 (171)
+||++|.|+......+++.. ..+..|+|+.+ ++.+..++.. +-..-.+..+|+ +.+|+...+||+|+.+..|.
T Consensus 54 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~I~~~~~l~ 132 (239)
T PRK00216 54 KVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA-EALPFPDNSFDAVTIAFGLR 132 (239)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc-ccCCCCCCCccEEEEecccc
Confidence 69999999988877777655 37888888754 2333333322 111123455677 56777778999999998887
Q ss_pred ccChhhhhchhhhhhhh-ccCceEEEecC
Q 030814 77 YLSPKYLNKTLPDLARV-ASDGVLIFAGY 104 (171)
Q Consensus 77 yLsprylNkTlPeLaRv-s~dgiVif~g~ 104 (171)
++.. +...|-++.++ ..+|.+++...
T Consensus 133 ~~~~--~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 133 NVPD--IDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cCCC--HHHHHHHHHHhccCCcEEEEEEe
Confidence 7653 44556666664 55777777653
No 31
>PRK08317 hypothetical protein; Provisional
Probab=97.67 E-value=0.0001 Score=55.02 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=65.9
Q ss_pred ccceeecCCchhHhHhhhhc--ccccccccccccc--cchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDI--EDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~--~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
.+||++|.|++.....+.+. ...+..|+++.+- +.+..+.......-.+.++|+ ..+|+...+||+|++..+++|
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA-DGLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc-ccCCCCCCCceEEEEechhhc
Confidence 36999999998877777654 2467889988642 222222111122233556777 567888899999999999999
Q ss_pred cChhhhhchhhhhhhhcc-CceEEEec
Q 030814 78 LSPKYLNKTLPDLARVAS-DGVLIFAG 103 (171)
Q Consensus 78 LsprylNkTlPeLaRvs~-dgiVif~g 103 (171)
+.. ....+.++.|+-+ +|.+++..
T Consensus 100 ~~~--~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 100 LED--PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred cCC--HHHHHHHHHHHhcCCcEEEEEe
Confidence 853 4567778877654 55555543
No 32
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.66 E-value=0.00024 Score=58.17 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=67.1
Q ss_pred cceeecCCchhHhHhhhhc--ccccccccccccc--cchhHHHHHHhHh---c-ceeeeeecCCCCCCCCcccEEEEccc
Q 030814 3 KVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDI--EDADARCKSLVHK---G-IVRVADIKFPLPYRAKSFPLVIVSDA 74 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~--~d~d~~CksLv~k---G-~VRvadikfpLPYR~KSFslVivSDa 74 (171)
+||++|-||+.+...|.+. ...+..|||+++- +-+.......-.. . -+..+|+ ..||+...|||+|+.+.+
T Consensus 76 ~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~~~ 154 (261)
T PLN02233 76 RVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYFDAITMGYG 154 (261)
T ss_pred EEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCEeEEEEecc
Confidence 6999999999976655543 2358899998752 1122111100011 1 2456787 678999999999999999
Q ss_pred ccccChhhhhchhhhhhhhccCc-eEEEec
Q 030814 75 LDYLSPKYLNKTLPDLARVASDG-VLIFAG 103 (171)
Q Consensus 75 LdyLsprylNkTlPeLaRvs~dg-iVif~g 103 (171)
|.++. ...+.|-|+.||-+.| .++++-
T Consensus 155 l~~~~--d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 155 LRNVV--DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccCC--CHHHHHHHHHHHcCcCcEEEEEE
Confidence 99885 4578899999997754 555544
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.60 E-value=0.00016 Score=53.06 Aligned_cols=99 Identities=23% Similarity=0.347 Sum_probs=72.3
Q ss_pred ccceeecCCchhHhHhhhhc--ccccccccccccccchhHHHHHHhH-hcc----eeeeeecCCCC--CCCCcccEEEEc
Q 030814 2 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVH-KGI----VRVADIKFPLP--YRAKSFPLVIVS 72 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~~d~d~~CksLv~-kG~----VRvadikfpLP--YR~KSFslVivS 72 (171)
.+|||+|-||+...-.|.++ ...+..||+..+- +=..|+...+ .|+ +.++|+ +.+| |. .+||+||..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~--~i~~a~~~~~~~~~~ni~~~~~d~-~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEE--MIEYAKKRAKELGLDNIEFIQGDI-EDLPQELE-EKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHH--HHHHHHHHHHHTTSTTEEEEESBT-TCGCGCSS-TTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHH--HHHHhhcccccccccccceEEeeh-hccccccC-CCeeEEEEc
Confidence 47999999999999999953 2678999987652 3334454433 343 467888 4488 87 999999999
Q ss_pred ccccccChhhhhchhhhhhhhccCceEEEecCCC
Q 030814 73 DALDYLSPKYLNKTLPDLARVASDGVLIFAGYPG 106 (171)
Q Consensus 73 DaLdyLsprylNkTlPeLaRvs~dgiVif~g~pg 106 (171)
.++.++... .+.+-++.|+.+++-++++..+.
T Consensus 81 ~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDP--EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCH--HHHHHHHHHHcCCCcEEEEEECC
Confidence 999777644 47788999988877666666555
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.58 E-value=0.00033 Score=54.72 Aligned_cols=95 Identities=14% Similarity=0.217 Sum_probs=68.2
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHh-cc----eeeeeecCCCCCCCCcccEEEEccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI----VRVADIKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~k-G~----VRvadikfpLPYR~KSFslVivSDaLd 76 (171)
.+||++|-|++.....|. +.+.+..||++++- +-..++.+.+. |+ +.++|+ ..+|+ ..+||+|+.+.++-
T Consensus 32 ~~vLDiGcG~G~~a~~La-~~g~~V~gvD~S~~--~i~~a~~~~~~~~~~~v~~~~~d~-~~~~~-~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLA-ANGFDVTAWDKNPM--SIANLERIKAAENLDNLHTAVVDL-NNLTF-DGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHH-HCCCEEEEEeCCHH--HHHHHHHHHHHcCCCcceEEecCh-hhCCc-CCCcCEEEEecchh
Confidence 379999999998776666 45778899988752 33345554443 22 345777 34555 46799999999999
Q ss_pred ccChhhhhchhhhhhhhcc-CceEEE
Q 030814 77 YLSPKYLNKTLPDLARVAS-DGVLIF 101 (171)
Q Consensus 77 yLsprylNkTlPeLaRvs~-dgiVif 101 (171)
|++|..+-..+-++.|+-+ .|.+++
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999888888888888755 565443
No 35
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.57 E-value=0.00045 Score=54.61 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=67.2
Q ss_pred ccceeecCCchhHhHhhhhc-ccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccCh
Q 030814 2 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 80 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke-e~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLsp 80 (171)
.+||++|-|++.+...|.+. .+.+..|||+++- .-..|+.....--+.++|+.. ++ -..+||+|+++.+|.|+..
T Consensus 33 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~--~i~~a~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~~d 108 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVERWPAARITGIDSSPA--MLAEARSRLPDCQFVEADIAS-WQ-PPQALDLIFANASLQWLPD 108 (258)
T ss_pred CEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHhCCCCeEEECchhc-cC-CCCCccEEEEccChhhCCC
Confidence 36999999999988777644 2578999998752 223344333333456788843 32 2459999999999999853
Q ss_pred hhhhchhhhhhhhcc-CceEEEecCCC
Q 030814 81 KYLNKTLPDLARVAS-DGVLIFAGYPG 106 (171)
Q Consensus 81 rylNkTlPeLaRvs~-dgiVif~g~pg 106 (171)
..+.+.++.|+-+ .|.+++. .|+
T Consensus 109 --~~~~l~~~~~~LkpgG~~~~~-~~~ 132 (258)
T PRK01683 109 --HLELFPRLVSLLAPGGVLAVQ-MPD 132 (258)
T ss_pred --HHHHHHHHHHhcCCCcEEEEE-CCC
Confidence 3467888888866 6666664 344
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.53 E-value=0.00046 Score=53.80 Aligned_cols=93 Identities=10% Similarity=0.133 Sum_probs=65.4
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhH-hcc---eeeeeecCCCCCCCCcccEEEEccccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVH-KGI---VRVADIKFPLPYRAKSFPLVIVSDALDYL 78 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~-kG~---VRvadikfpLPYR~KSFslVivSDaLdyL 78 (171)
+||++|-|++.....|.+ .+.+..||++.+ ++-..++...+ .|+ ..++|+. .+|+ +++||+|+.+.++-++
T Consensus 33 ~vLDiGcG~G~~a~~la~-~g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 33 KTLDLGCGQGRNSLYLSL-AGYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDIN-AAAL-NEDYDFIFSTVVFMFL 107 (195)
T ss_pred cEEEeCCCCCHHHHHHHH-CCCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccch-hccc-cCCCCEEEEecccccC
Confidence 699999999998877774 567888888765 23333333332 232 3456763 3444 3689999999999999
Q ss_pred Chhhhhchhhhhhhhc-cCceEE
Q 030814 79 SPKYLNKTLPDLARVA-SDGVLI 100 (171)
Q Consensus 79 sprylNkTlPeLaRvs-~dgiVi 100 (171)
++..+-..+.++.|+- .+|+++
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEE
Confidence 9888888888988864 456533
No 37
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.45 E-value=0.00082 Score=52.22 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=60.6
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccc--cchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccCh
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDI--EDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 80 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~--~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLsp 80 (171)
+||++|.|+......|.+. +...+|+|+..- +.+..++...-....+...|+.--+.-...+||+||.+..++++..
T Consensus 51 ~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~ 129 (233)
T PRK05134 51 RVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPD 129 (233)
T ss_pred eEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCC
Confidence 6999999999888777754 567889887532 1122222211111123344443222234579999999999998853
Q ss_pred hhhhchhhhhhhh-ccCceEEEecC
Q 030814 81 KYLNKTLPDLARV-ASDGVLIFAGY 104 (171)
Q Consensus 81 rylNkTlPeLaRv-s~dgiVif~g~ 104 (171)
...+|-.+.|+ ..+|.++++..
T Consensus 130 --~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 130 --PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred --HHHHHHHHHHHcCCCcEEEEEec
Confidence 34455666665 45677776654
No 38
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.45 E-value=0.00035 Score=58.90 Aligned_cols=102 Identities=27% Similarity=0.311 Sum_probs=76.7
Q ss_pred ccceeecCCchhHhHhhhhcc-ccccccccccc--ccchhHHHHHHhHhcce--eeeeecCCCCCCCCcccEEEEccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKGIV--RVADIKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd--~~d~d~~CksLv~kG~V--RvadikfpLPYR~KSFslVivSDaLd 76 (171)
.+|||||-||.-+--.+.+.- ..+.+|+++++ ++-+...|+.+=-.+ | -+||- .-|||.++|||+|.+|=.|.
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA-e~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA-ENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEech-hhCCCCCCccCEEEeeehhh
Confidence 379999999998877777554 36788887765 233333444332222 3 37887 88999999999999999999
Q ss_pred ccChhhhhchhhhhhhhccCce---EEEecCCCc
Q 030814 77 YLSPKYLNKTLPDLARVASDGV---LIFAGYPGQ 107 (171)
Q Consensus 77 yLsprylNkTlPeLaRvs~dgi---Vif~g~pgq 107 (171)
.++ ..++.|-|+.||-.-|- |+-.+.|.-
T Consensus 131 nv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 131 NVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred cCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 998 78999999999998775 666666643
No 39
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.44 E-value=0.0013 Score=50.38 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=60.4
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccc--cchhHHHHHHhHhcc--eee--eeec-CCCCCCCCcccEEEEcccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDI--EDADARCKSLVHKGI--VRV--ADIK-FPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~--~d~d~~CksLv~kG~--VRv--adik-fpLPYR~KSFslVivSDaL 75 (171)
+||++|.|++.....+.+. ..+..|+|+.+- +.+..+ +...|+ ++. +|+. ++.+. ..+||+|++++.+
T Consensus 48 ~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~---~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~~~l 122 (224)
T TIGR01983 48 RVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLH---AKKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCMEVL 122 (224)
T ss_pred eEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHH---HHHcCCCceEEEeCCHHHhhcCC-CCCccEEEehhHH
Confidence 6999999999988777654 456788887542 222222 223443 333 4442 22222 4789999999999
Q ss_pred cccChhhhhchhhhhhhhc-cCceEEEec
Q 030814 76 DYLSPKYLNKTLPDLARVA-SDGVLIFAG 103 (171)
Q Consensus 76 dyLsprylNkTlPeLaRvs-~dgiVif~g 103 (171)
.+... ....|.++.++- .+|.++++.
T Consensus 123 ~~~~~--~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 123 EHVPD--PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HhCCC--HHHHHHHHHHhcCCCcEEEEEe
Confidence 98853 457888887764 455655544
No 40
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.38 E-value=0.00046 Score=56.98 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=44.4
Q ss_pred eeeecCCCCCCCCcccEEEEcccccccChhhhhchhhhhhhhccCceEEEec
Q 030814 52 VADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 52 vadikfpLPYR~KSFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g 103 (171)
++|+ ..+|+...+||+|+..++|-|+++....+.+.++.|+-+.|=++++|
T Consensus 191 ~~dl-~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 191 KHNL-LAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred eccC-CCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5677 45666778999999999999999999999999999998888777777
No 41
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.36 E-value=0.00036 Score=47.54 Aligned_cols=100 Identities=24% Similarity=0.245 Sum_probs=65.6
Q ss_pred ccceeecCCchhHhHhhhh-cccccccccccccc--cchhHHHHHH--hHhcceeeeeecCCCCCCCCcccEEEEcc-cc
Q 030814 2 HKVLHVGPDTCSVVSTLLK-EEETEAWGVEPYDI--EDADARCKSL--VHKGIVRVADIKFPLPYRAKSFPLVIVSD-AL 75 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llk-ee~teAWGVEPyd~--~d~d~~CksL--v~kG~VRvadikfpLPYR~KSFslVivSD-aL 75 (171)
.+||++|-||....-.|.+ ..+.+..|||+++- +-+.++.... -.+=.+..+|+ ...+--...||+|+.+. .+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCcc
Confidence 4799999999999999997 48888999998652 2233333211 12222566888 44555556699999999 66
Q ss_pred cccCh-hhhhchhhhhhhh-ccCceEEEe
Q 030814 76 DYLSP-KYLNKTLPDLARV-ASDGVLIFA 102 (171)
Q Consensus 76 dyLsp-rylNkTlPeLaRv-s~dgiVif~ 102 (171)
+++.+ ...-+.|-.+.+. ..+|+++++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 65554 4555666666644 445555543
No 42
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.36 E-value=0.0018 Score=51.77 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=63.8
Q ss_pred ccceeecCCchhHhHhhhhcc-cccccccccccccchhHHHHHHhHhc-ceeeeeecCCCCCCCCcccEEEEcccccccC
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~~d~d~~CksLv~kG-~VRvadikfpLPYR~KSFslVivSDaLdyLs 79 (171)
.+||++|-|++.+...|.+.- +.+..|||+++-- -..++. ++ -++++|+. .+| ...+||+|+++.+|.|+.
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~--~~~a~~---~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~~ 103 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEM--VAAARE---RGVDARTGDVR-DWK-PKPDTDVVVSNAALQWVP 103 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHH--HHHHHh---cCCcEEEcChh-hCC-CCCCceEEEEehhhhhCC
Confidence 369999999999887776542 5678999986421 122222 23 25678874 454 346899999999999985
Q ss_pred hhhhhchhhhhhhhc-cCceEEEe
Q 030814 80 PKYLNKTLPDLARVA-SDGVLIFA 102 (171)
Q Consensus 80 prylNkTlPeLaRvs-~dgiVif~ 102 (171)
. ..+.+.++.|+- ..|.++++
T Consensus 104 d--~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 104 E--HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred C--HHHHHHHHHHhCCCCcEEEEE
Confidence 3 467788888864 56666665
No 43
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.35 E-value=0.001 Score=45.36 Aligned_cols=98 Identities=10% Similarity=0.108 Sum_probs=60.4
Q ss_pred ccceeecCCchhHhHhhhhcc-cccccccccccc--cchhHHHHHHh-HhcceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDI--EDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~--~d~d~~CksLv-~kG~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
.+||++|+|+......+.+.- +.+.+|+|+.+- +-+..+++.+- .+=.+..+|+...+++-..+||.|+++...+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~- 99 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG- 99 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch-
Confidence 369999999999888888653 478999998643 22334444331 1112223454333455456899999865432
Q ss_pred cChhhhhchhhhhhhhcc-CceEEEecC
Q 030814 78 LSPKYLNKTLPDLARVAS-DGVLIFAGY 104 (171)
Q Consensus 78 LsprylNkTlPeLaRvs~-dgiVif~g~ 104 (171)
-+.+.+.++.|+-+ +|.++++.+
T Consensus 100 ----~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 100 ----LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEec
Confidence 33466777777654 667776653
No 44
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.29 E-value=0.00099 Score=53.80 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=56.7
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccChh
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPK 81 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLspr 81 (171)
.+||++|.||+.+.-.+.+.......||+..+.- ++.-.+.+-+.|+ . .. +.++....+||+|++. . ...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~-l~~A~~n~~~~~~-~-~~--~~~~~~~~~fD~Vvan-i----~~~ 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQA-VEAARENAELNGV-E-LN--VYLPQGDLKADVIVAN-I----LAN 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHH-HHHHHHHHHHcCC-C-ce--EEEccCCCCcCEEEEc-C----cHH
Confidence 3799999999755555555444558888876532 2222222233444 1 11 2233333489999753 2 233
Q ss_pred hhhchhhhhhhhc-cCceEEEecCCCcc
Q 030814 82 YLNKTLPDLARVA-SDGVLIFAGYPGQQ 108 (171)
Q Consensus 82 ylNkTlPeLaRvs-~dgiVif~g~pgq~ 108 (171)
-+-+.++++.|+- .+|.+|++|.-..+
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~~~ 218 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILEEQ 218 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcHhh
Confidence 3456788887765 57899998865443
No 45
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.23 E-value=0.00056 Score=56.05 Aligned_cols=147 Identities=22% Similarity=0.248 Sum_probs=63.5
Q ss_pred cceeecCCchhHhHhhhhc--ccccccccccccccchhHHHHHHhHhcc----eeeeeecCCCCCCCCcccEEEEccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~~d~d~~CksLv~kG~----VRvadikfpLPYR~KSFslVivSDaLd 76 (171)
+|||+|.||..+...|.+. ..++.-|+++++-- .+.-.+.+-+.|. ..++|. ..||+++.|||.|.+|=.|-
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M-L~~a~~k~~~~~~~~i~~v~~da-~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM-LEVARKKLKREGLQNIEFVQGDA-EDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH-HHHHHHHHHHTT--SEEEEE-BT-TB--S-TT-EEEEEEES-GG
T ss_pred EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH-HHHHHHHHHhhCCCCeeEEEcCH-HHhcCCCCceeEEEHHhhHH
Confidence 7999999999988888764 34678888877532 2222223333333 344676 78999999999999999998
Q ss_pred ccChhhhhchhhhhhhhccCc---eEEEecCCCcchhhhh--hhhhcCCC--ccccchhHHHHHHHHhccc---cchHHH
Q 030814 77 YLSPKYLNKTLPDLARVASDG---VLIFAGYPGQQRAKVA--ELSKFGRP--AKMRSSSWWIRYFVQTSLE---ENEPAV 146 (171)
Q Consensus 77 yLsprylNkTlPeLaRvs~dg---iVif~g~pgq~~ak~~--elskfgr~--ak~RsssWW~r~F~q~~le---eNea~~ 146 (171)
.+.. ..+.|.|+.||-+.| +|+-.+.|...-.+.. -..|.=-| +++-+..|..=.|...+++ .+++..
T Consensus 128 n~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~ 205 (233)
T PF01209_consen 128 NFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELK 205 (233)
T ss_dssp G-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-------------------------------------
T ss_pred hhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccccccc
Confidence 8864 578999999998653 3444556654322211 11111111 2333344444345555555 455655
Q ss_pred HHHHHHH
Q 030814 147 KKFEQAA 153 (171)
Q Consensus 147 kkfeqa~ 153 (171)
..++++-
T Consensus 206 ~~l~~~G 212 (233)
T PF01209_consen 206 ELLEEAG 212 (233)
T ss_dssp -------
T ss_pred ccccccc
Confidence 5555553
No 46
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.18 E-value=0.0015 Score=53.15 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=61.1
Q ss_pred cceeecCCchhHhHhhhhcc----cccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEccccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEE----ETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 78 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee----~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyL 78 (171)
+||++|-||+.....|.+.- ..+..||+++.-- ++ .++.-...--+.++|+ ..||+...|||+|+...+
T Consensus 88 ~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~-l~-~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 88 ALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVA-IK-YAAKRYPQVTFCVASS-HRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred eEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHH-HH-HHHHhCCCCeEEEeec-ccCCCcCCceeEEEEecC----
Confidence 59999999999988876532 2356899887532 21 1211111123568898 688999999999997643
Q ss_pred Chhhhhchhhhhhhhcc-CceEEEecCCCc
Q 030814 79 SPKYLNKTLPDLARVAS-DGVLIFAGYPGQ 107 (171)
Q Consensus 79 sprylNkTlPeLaRvs~-dgiVif~g~pgq 107 (171)
|. .+.|+.|+-+ +|.+|++. |++
T Consensus 161 -~~----~~~e~~rvLkpgG~li~~~-p~~ 184 (272)
T PRK11088 161 -PC----KAEELARVVKPGGIVITVT-PGP 184 (272)
T ss_pred -CC----CHHHHHhhccCCCEEEEEe-CCC
Confidence 43 3578999855 67776654 554
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.14 E-value=0.0017 Score=49.53 Aligned_cols=93 Identities=10% Similarity=0.051 Sum_probs=55.3
Q ss_pred ccceeecCCchhHhHhhhhcc-ccccccccccc--ccchhHHHHHHhHhc-ceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd--~~d~d~~CksLv~kG-~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
.+||++|.|++.+...+.+.. ..+..|||+.+ ++-+.+++..+--.. .+..+|+.. ++ ..+||+|+++....+
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~--~~-~~~~D~v~~~~~~~~ 109 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI--EL-PGKADAIFIGGSGGN 109 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh--hc-CcCCCEEEECCCccC
Confidence 369999999999888777653 45788998865 233444443321111 133356533 33 258999998655443
Q ss_pred cChhhhhchhhhhhhh-ccCceEEEe
Q 030814 78 LSPKYLNKTLPDLARV-ASDGVLIFA 102 (171)
Q Consensus 78 LsprylNkTlPeLaRv-s~dgiVif~ 102 (171)
+...+.++.|+ ..+|.+++.
T Consensus 110 -----~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 110 -----LTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred -----HHHHHHHHHHhcCCCeEEEEE
Confidence 34445554444 456776664
No 48
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.10 E-value=0.0012 Score=49.94 Aligned_cols=120 Identities=20% Similarity=0.154 Sum_probs=71.7
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhH---hcceeeeeecCCCCCCCCcccEEEEcccccccC
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVH---KGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~---kG~VRvadikfpLPYR~KSFslVivSDaLdyLs 79 (171)
+||++|+|++.+...|++. ....+|||...- +-..++.... +=-+..+|+ ..+|+...+|+.|| ||.-=+++
T Consensus 16 ~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~--~~~~~~~~~~~~~~v~ii~~D~-~~~~~~~~~~d~vi-~n~Py~~~ 90 (169)
T smart00650 16 TVLEIGPGKGALTEELLER-AARVTAIEIDPR--LAPRLREKFAAADNLTVIHGDA-LKFDLPKLQPYKVV-GNLPYNIS 90 (169)
T ss_pred EEEEECCCccHHHHHHHhc-CCeEEEEECCHH--HHHHHHHHhccCCCEEEEECch-hcCCccccCCCEEE-ECCCcccH
Confidence 6999999999999999966 678999988741 2222222221 122556776 55666666788765 67666677
Q ss_pred hhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcCCCccccchhHHHHH
Q 030814 80 PKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRY 133 (171)
Q Consensus 80 prylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfgr~ak~RsssWW~r~ 133 (171)
..-+.+.+.+.. .-.+|++++ |.-..-+-+++.|-+-.-+-+-+|.-+
T Consensus 91 ~~~i~~~l~~~~-~~~~~~l~~-----q~e~a~rl~~~~~~~~y~~lsv~~~~~ 138 (169)
T smart00650 91 TPILFKLLEEPP-AFRDAVLMV-----QKEVARRLAAKPGSKDYGRLSVLLQPY 138 (169)
T ss_pred HHHHHHHHhcCC-CcceEEEEE-----EHHHhHHhcCCCCCCcccHHHHHHHHH
Confidence 777777765433 225555555 222222344555544444445555433
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.09 E-value=0.0018 Score=50.96 Aligned_cols=122 Identities=16% Similarity=0.083 Sum_probs=71.7
Q ss_pred ccceeecCCchhHhHhhhhc-cccccccccccc--ccchhHHHHHHh-HhcceeeeeecCCCC--CCCCcccEEEEcccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLP--YRAKSFPLVIVSDAL 75 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke-e~teAWGVEPyd--~~d~d~~CksLv-~kG~VRvadikfpLP--YR~KSFslVivSDaL 75 (171)
.+||++|.||+.....|.+. .....+|||+++ ++.+.++++..- ..--+.++|+.-.+| +...+||+|++.-..
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~ 121 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD 121 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC
Confidence 36999999999998888754 356899999986 343444444321 111246677722344 778899999875322
Q ss_pred cccC-hhh-----hhchhhhhhhhcc-CceEEEec-CCCcchhhhhhhhhcCCCcc
Q 030814 76 DYLS-PKY-----LNKTLPDLARVAS-DGVLIFAG-YPGQQRAKVAELSKFGRPAK 123 (171)
Q Consensus 76 dyLs-pry-----lNkTlPeLaRvs~-dgiVif~g-~pgq~~ak~~elskfgr~ak 123 (171)
.+.. +.. ....|-++.|+-+ +|+++++. .+++.+.-...+++.|....
T Consensus 122 p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 122 PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 2211 111 2345677776654 67777654 44444444455555554333
No 50
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.04 E-value=0.0044 Score=47.94 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=42.6
Q ss_pred cceeecCCchhHhHhhhhcc-cccccccccccccchhHHHHHHhH-hc----ceeeeeecCCCCCCCCcccEEEE
Q 030814 3 KVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVH-KG----IVRVADIKFPLPYRAKSFPLVIV 71 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~~d~d~~CksLv~-kG----~VRvadikfpLPYR~KSFslViv 71 (171)
+||++|.|++.+...+.+.- .....|+|...- +-..|+..++ .| -+..+|+.-+ ....+||+||+
T Consensus 90 ~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~--~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~ 160 (251)
T TIGR03534 90 RVLDLGTGSGAIALALAKERPDARVTAVDISPE--ALAVARKNAARLGLDNVTFLQSDWFEP--LPGGKFDLIVS 160 (251)
T ss_pred eEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCCCeEEEEECchhcc--CcCCceeEEEE
Confidence 79999999999988888653 457889987642 2223333222 23 3455676333 34678999986
No 51
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.02 E-value=0.0018 Score=53.34 Aligned_cols=95 Identities=11% Similarity=0.160 Sum_probs=66.0
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhH-hcc---eeeeeecCCCCCCCCcccEEEEccccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVH-KGI---VRVADIKFPLPYRAKSFPLVIVSDALDYL 78 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~-kG~---VRvadikfpLPYR~KSFslVivSDaLdyL 78 (171)
+||++|-|++.....|.+ .+.+..||+.... +-..++...+ .|+ +.+.|+.-. +. +.+||+|+++.+|-|+
T Consensus 123 ~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~--ai~~~~~~~~~~~l~v~~~~~D~~~~-~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLAL-LGFDVTAVDINQQ--SLENLQEIAEKENLNIRTGLYDINSA-SI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHH-CCCEEEEEECCHH--HHHHHHHHHHHcCCceEEEEechhcc-cc-cCCccEEEEcchhhhC
Confidence 699999999998877775 4678888877642 2223333333 233 345666432 22 6899999999999999
Q ss_pred Chhhhhchhhhhhhhcc-CceEEEe
Q 030814 79 SPKYLNKTLPDLARVAS-DGVLIFA 102 (171)
Q Consensus 79 sprylNkTlPeLaRvs~-dgiVif~ 102 (171)
.+......+-++.|+-+ +|++++.
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99888888888887655 5664443
No 52
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.98 E-value=0.0037 Score=49.16 Aligned_cols=90 Identities=23% Similarity=0.284 Sum_probs=57.7
Q ss_pred cceeecCCchhHhHhhhhc--ccccccccccccccchhHHHHHHhHhcc-----eeeeeecCCCCCCCCcccEEEEcccc
Q 030814 3 KVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~~d~d~~CksLv~kG~-----VRvadikfpLPYR~KSFslVivSDaL 75 (171)
+||++|.||+.....|.+. ...+..|||..+-- ++.-.+.+-+.|+ +..+|..-.+| ...+||.|+++.++
T Consensus 75 ~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~-~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 75 KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKEL-AIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIVTAAA 152 (205)
T ss_pred EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEEccCc
Confidence 6999999999876544432 24578999987432 2222233334442 35577755554 35799999999998
Q ss_pred cccChhhhhchhhhhhh-hccCceEEEe
Q 030814 76 DYLSPKYLNKTLPDLAR-VASDGVLIFA 102 (171)
Q Consensus 76 dyLsprylNkTlPeLaR-vs~dgiVif~ 102 (171)
+++.+ ++.| +..+|.+++.
T Consensus 153 ~~~~~--------~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 STIPS--------ALVRQLKDGGVLVIP 172 (205)
T ss_pred chhhH--------HHHHhcCcCcEEEEE
Confidence 87764 3433 5667777664
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.93 E-value=0.0038 Score=47.26 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=59.2
Q ss_pred ccceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccC
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLs 79 (171)
.+||++|+|++.+...+.+.. .+..|||... ++-+..+++..-..-.+..+|+ +..+ ..+||+|+.....-..+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVKELRENAKLNNVGLDVVMTDL-FKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccc-cccc--CCcccEEEECCCCCCCc
Confidence 469999999998888777544 4888988653 3335556554322223344676 3334 34899999875543332
Q ss_pred hh-------------------hhhchhhhhhhhccC-ceEEEec
Q 030814 80 PK-------------------YLNKTLPDLARVASD-GVLIFAG 103 (171)
Q Consensus 80 pr-------------------ylNkTlPeLaRvs~d-giVif~g 103 (171)
+. .+.+.+.++.|+-+. |.+++.-
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 11 134457777776654 6555543
No 54
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.85 E-value=0.0059 Score=47.40 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=53.8
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHh-Hhcc----eeeeeecCCCCCCCCcccEEEEccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLV-HKGI----VRVADIKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv-~kG~----VRvadikfpLPYR~KSFslVivSDaLd 76 (171)
.+||++|.|++.....|. +......|||.+ ++.-..|+.-. +-|+ +..+|..-++| ..++||+|++.-+..
T Consensus 80 ~~VLeiG~GsG~~t~~la-~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~~~~~ 155 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLA-HLVRRVFSVERI--KTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPFDRILVTAAAP 155 (212)
T ss_pred CEEEEECCCccHHHHHHH-HHhCEEEEEeCC--HHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCcCEEEEccCch
Confidence 479999999998765444 334578888877 23333333333 2344 23445433333 237899999988777
Q ss_pred ccChhhhhchhhhhhhhccCceEEEec
Q 030814 77 YLSPKYLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 77 yLsprylNkTlPeLaRvs~dgiVif~g 103 (171)
++..+. +..+...|++++.-
T Consensus 156 ~~~~~l-------~~~L~~gG~lv~~~ 175 (212)
T PRK00312 156 EIPRAL-------LEQLKEGGILVAPV 175 (212)
T ss_pred hhhHHH-------HHhcCCCcEEEEEE
Confidence 763322 23456677665543
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=96.85 E-value=0.0038 Score=54.59 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=65.9
Q ss_pred ccceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccC
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLs 79 (171)
.+||++|-|++.....+.+.-+.+.-||++++ ++-+..+|..+ .--+..+|.. .+ ..+||+|++..+++|+.
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l--~v~~~~~D~~-~l---~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL--PVEIRLQDYR-DL---NGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC--eEEEEECchh-hc---CCCCCEEEEeCchhhCC
Confidence 37999999999998888866667888887764 23233333211 0113334442 22 47899999999999999
Q ss_pred hhhhhchhhhhhhhcc-CceEEEe
Q 030814 80 PKYLNKTLPDLARVAS-DGVLIFA 102 (171)
Q Consensus 80 prylNkTlPeLaRvs~-dgiVif~ 102 (171)
++++...+.++.|+-+ +|++++.
T Consensus 243 ~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 243 PKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9888888999998765 4555553
No 56
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.81 E-value=0.0054 Score=50.94 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=62.4
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccc--cchhHHHHHHhHhcce--eeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDI--EDADARCKSLVHKGIV--RVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~--~d~d~~CksLv~kG~V--RvadikfpLPYR~KSFslVivSDaLdy 77 (171)
.+||++|.||+.+...+.+.......||+..+. +-+..|++.---...+ ..+| .++.-..+||+|++ +.+
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~---~~~~~~~~fDlVva-n~~-- 234 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY---LEQPIEGKADVIVA-NIL-- 234 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc---cccccCCCceEEEE-ecC--
Confidence 379999999987666666655567888887653 2233333321111122 2222 23444679999976 432
Q ss_pred cChhhhhchhhhhhhh-ccCceEEEecCCCcchhhhhh
Q 030814 78 LSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKVAE 114 (171)
Q Consensus 78 LsprylNkTlPeLaRv-s~dgiVif~g~pgq~~ak~~e 114 (171)
..-+.+.++++.|+ ..+|.+|++|.-..+...+.+
T Consensus 235 --~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~ 270 (288)
T TIGR00406 235 --AEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCD 270 (288)
T ss_pred --HHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHH
Confidence 33345677888776 457888888865555444433
No 57
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.80 E-value=0.021 Score=45.87 Aligned_cols=135 Identities=13% Similarity=0.144 Sum_probs=77.1
Q ss_pred ccceeecCCchhHhHhhhhc--ccccccccccccccchhHHHHHHhH-hcc----eeeeeecCCCCCCCCcccEEEEccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVH-KGI----VRVADIKFPLPYRAKSFPLVIVSDA 74 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~~d~d~~CksLv~-kG~----VRvadikfpLPYR~KSFslVivSDa 74 (171)
.+||++|.|++..+..+.+. ...+..||++.+-- -..++.... .|+ ++.+|+ ..+|+-..+||+||..-+
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~--l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEM--LAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHH--HHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCc
Confidence 47999999996544333332 23468888875421 112222222 232 345787 567887889999998888
Q ss_pred ccccChhhhhchhhhhhhhcc-CceEEEecCCCcch---hhhhhh-hhcCCCccccchhHHHHHHHHhcccc
Q 030814 75 LDYLSPKYLNKTLPDLARVAS-DGVLIFAGYPGQQR---AKVAEL-SKFGRPAKMRSSSWWIRYFVQTSLEE 141 (171)
Q Consensus 75 LdyLsprylNkTlPeLaRvs~-dgiVif~g~pgq~~---ak~~el-skfgr~ak~RsssWW~r~F~q~~lee 141 (171)
+.+... ..+++.++.|+-+ .|.+++++...... .-..++ ...|......+..=|.+.+.++|+..
T Consensus 156 ~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 156 INLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred ccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence 865432 3467888888655 66777776543221 000111 11122233334444777888877654
No 58
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.72 E-value=0.0081 Score=47.70 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=56.2
Q ss_pred ccceeecCCchhHhHhhhhc--cccccccccccccc--chhHHHHHHhHhcc----eeeeeecCCCCCCCCcccEEEEcc
Q 030814 2 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIE--DADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVSD 73 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~~--d~d~~CksLv~kG~----VRvadikfpLPYR~KSFslVivSD 73 (171)
.+||++|.||++....|.+. .+....|||+.+-- -+..+++ +-|+ +..+|....+| -...||+|+++-
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~---~~g~~~v~~~~gd~~~~~~-~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK---KLGYDNVEVIVGDGTLGYE-ENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCCeEEEECCcccCCC-cCCCcCEEEECC
Confidence 47999999999987655543 34688999987422 1333333 2343 45566533332 346899999988
Q ss_pred cccccChhhhhchhhhhhhhccCceEEEe
Q 030814 74 ALDYLSPKYLNKTLPDLARVASDGVLIFA 102 (171)
Q Consensus 74 aLdyLsprylNkTlPeLaRvs~dgiVif~ 102 (171)
+...+.+..++ .+..+|.+++.
T Consensus 154 ~~~~~~~~l~~-------~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGPDIPKPLIE-------QLKDGGIMVIP 175 (212)
T ss_pred CcccchHHHHH-------hhCCCcEEEEE
Confidence 77665443322 45677776553
No 59
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.23 E-value=0.024 Score=44.55 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=55.3
Q ss_pred ccceeecCCchhHhHhhhhcc--cccccccccccc--cchhHHHHHHhHhcc----eeeeeecCCCCCCCCcccEEEEcc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYDI--EDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVSD 73 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee--~teAWGVEPyd~--~d~d~~CksLv~kG~----VRvadikfpLPYR~KSFslVivSD 73 (171)
.+||++|.||......|.+.. ++..+|||.++- +.+..+++. .|+ +..+|..-.+| ...+||+|+++.
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~---~g~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~ 154 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK---LGLDNVIVIVGDGTQGWE-PLAPYDRIYVTA 154 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH---CCCCCeEEEECCcccCCc-ccCCCCEEEEcC
Confidence 379999999999887776543 345899987642 223334333 343 44567633222 346899999887
Q ss_pred cccccChhhhhchhhhhhhhccCceEEEe
Q 030814 74 ALDYLSPKYLNKTLPDLARVASDGVLIFA 102 (171)
Q Consensus 74 aLdyLsprylNkTlPeLaRvs~dgiVif~ 102 (171)
+..++.+. + +..+...|.+++.
T Consensus 155 ~~~~~~~~-~------~~~L~~gG~lv~~ 176 (215)
T TIGR00080 155 AGPKIPEA-L------IDQLKEGGILVMP 176 (215)
T ss_pred CcccccHH-H------HHhcCcCcEEEEE
Confidence 76655332 1 2345677776654
No 60
>PRK06922 hypothetical protein; Provisional
Probab=96.21 E-value=0.0076 Score=58.15 Aligned_cols=97 Identities=20% Similarity=0.352 Sum_probs=66.1
Q ss_pred ccceeecCCchhHhHhhhhc-cccccccccccc--ccchhHHHHHHhHhc---ceeeeeecCCCC--CCCCcccEEEEcc
Q 030814 2 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKG---IVRVADIKFPLP--YRAKSFPLVIVSD 73 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke-e~teAWGVEPyd--~~d~d~~CksLv~kG---~VRvadikfpLP--YR~KSFslVivSD 73 (171)
.+||++|.||+.+...|.+. .+.+..|++.++ ++.+.+++. ..| -+..+|+ ..|| +.+.|||+|+.+-
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~---~~g~~ie~I~gDa-~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQ---NEGRSWNVIKGDA-INLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh---hcCCCeEEEEcch-HhCccccCCCCEEEEEEch
Confidence 36999999998776666542 467899998876 333333322 112 2344787 4567 7888999999987
Q ss_pred ccccc-----------ChhhhhchhhhhhhhccCc-eEEEe
Q 030814 74 ALDYL-----------SPKYLNKTLPDLARVASDG-VLIFA 102 (171)
Q Consensus 74 aLdyL-----------sprylNkTlPeLaRvs~dg-iVif~ 102 (171)
++.++ .++.+.+.|.++.|+-+.| .+++.
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 77644 2567889999999987654 44443
No 61
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.96 E-value=0.024 Score=45.36 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=60.4
Q ss_pred cceeecCCchhHhHhhhhcc--cccccccccccccchhHHHHHHhHhcceeeeeecCCC-------CCCCCcccEEEEcc
Q 030814 3 KVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPL-------PYRAKSFPLVIVSD 73 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee--~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpL-------PYR~KSFslVivSD 73 (171)
+||++|.||+.....|++.- +...-|||+.++.... + + .+..+|+.-+- |...++||+|+++=
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~-~----v---~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIV-G----V---DFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCC-C----c---EEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 69999999999888887653 3578999998864321 1 1 25567774321 36689999998744
Q ss_pred cccccChh------h---hhchhhhhhhhccC-ceEEEecCC
Q 030814 74 ALDYLSPK------Y---LNKTLPDLARVASD-GVLIFAGYP 105 (171)
Q Consensus 74 aLdyLspr------y---lNkTlPeLaRvs~d-giVif~g~p 105 (171)
+..+.... . +...|-+..|+-+. |.+++.-+.
T Consensus 126 ~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 126 APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 44443211 1 24567788887654 555554333
No 62
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.89 E-value=0.021 Score=46.91 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=54.9
Q ss_pred ccceeecCCchhHhHhhhhcc-cccccccccccccchhHHHHHHhHh--c-----c--eeeeeecCCCCCCCCcccEEEE
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHK--G-----I--VRVADIKFPLPYRAKSFPLVIV 71 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~~d~d~~CksLv~k--G-----~--VRvadikfpLPYR~KSFslViv 71 (171)
++||++|.|++++...+++.. ..+.-+||..+- +-..|+..... | . +.++|----|....++||+||+
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~--vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEK--VIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHH--HHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 479999999999999998754 234444444321 12333333211 1 1 2234431112223578999875
Q ss_pred cccccccChh---hhhchhhhh-hhhccCceEEEec-CCCcc
Q 030814 72 SDALDYLSPK---YLNKTLPDL-ARVASDGVLIFAG-YPGQQ 108 (171)
Q Consensus 72 SDaLdyLspr---ylNkTlPeL-aRvs~dgiVif~g-~pgq~ 108 (171)
|.-+...|. |-...+-.+ .++..+|++++.+ .|..+
T Consensus 152 -D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~ 192 (270)
T TIGR00417 152 -DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQ 192 (270)
T ss_pred -eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccC
Confidence 655443331 111222232 4578889988764 34443
No 63
>PRK14967 putative methyltransferase; Provisional
Probab=95.85 E-value=0.087 Score=41.59 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=42.9
Q ss_pred cceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVS 72 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivS 72 (171)
+||++|.|++.+...+.+....+..|||..+ ++-+..|++..=-.-.+..+|+.-.+ +..+||+||..
T Consensus 39 ~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~--~~~~fD~Vi~n 108 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV--EFRPFDVVVSN 108 (223)
T ss_pred eEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc--cCCCeeEEEEC
Confidence 6999999998877777765445788888765 33333444322111234556764433 46789999863
No 64
>PRK14968 putative methyltransferase; Provisional
Probab=95.84 E-value=0.076 Score=39.08 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=44.8
Q ss_pred ccceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHhHhc---ceeeeeecCCCCCCCCcccEEEEcc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKG---IVRVADIKFPLPYRAKSFPLVIVSD 73 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv~kG---~VRvadikfpLPYR~KSFslVivSD 73 (171)
.+||++|.|+......|.+. +....|+|..+ ++-+.++++..--+. .+..+|..- +..+++||+|+...
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~d~vi~n~ 98 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE--PFRGDKFDVILFNP 98 (188)
T ss_pred CEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc--cccccCceEEEECC
Confidence 36999999999999888866 78889988764 222333433211111 134566533 45677999999754
No 65
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.78 E-value=0.026 Score=44.66 Aligned_cols=67 Identities=25% Similarity=0.326 Sum_probs=43.3
Q ss_pred cceeecCCchhHhHhhhhcc-ccccccccccc--ccchhHHHH-HHhHhcceeeeeecCCCCCCCCcccEEEE
Q 030814 3 KVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCK-SLVHKGIVRVADIKFPLPYRAKSFPLVIV 71 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee-~teAWGVEPyd--~~d~d~~Ck-sLv~kG~VRvadikfpLPYR~KSFslViv 71 (171)
+||++|.|++.+...|.+.- .....|+|..+ ++-+..+++ .+...-.+..+|+--+++ ..+||+||+
T Consensus 111 ~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~ 181 (275)
T PRK09328 111 RVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVS 181 (275)
T ss_pred EEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEE
Confidence 69999999999888887654 46788888654 233444444 111122345567644444 678999887
No 66
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.45 E-value=0.12 Score=42.48 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=64.5
Q ss_pred ccceeecCCchhHhHhhhhcc-cccccccccccccchhHHHHHH-hHhcc-----eeeeeecCCCCCCCCcccEEEEccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSL-VHKGI-----VRVADIKFPLPYRAKSFPLVIVSDA 74 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~~d~d~~CksL-v~kG~-----VRvadikfpLPYR~KSFslVivSDa 74 (171)
.+|||||-|++.+...+++.- +...-|++. ..+-..++.- -+.|+ +..+|+ |..|+- .+|+|+.+.+
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~---~~~~~~a~~~~~~~gl~~rv~~~~~d~-~~~~~~--~~D~v~~~~~ 224 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNL---PGAIDLVNENAAEKGVADRMRGIAVDI-YKESYP--EADAVLFCRI 224 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEec---HHHHHHHHHHHHhCCccceEEEEecCc-cCCCCC--CCCEEEeEhh
Confidence 579999999999888888764 345666653 2222333332 22343 345676 334442 4799999999
Q ss_pred ccccChhhhhchhhhhhhhcc-CceEEEec
Q 030814 75 LDYLSPKYLNKTLPDLARVAS-DGVLIFAG 103 (171)
Q Consensus 75 LdyLsprylNkTlPeLaRvs~-dgiVif~g 103 (171)
|-+..+....+.|-++.|+-+ .|.+++.-
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 988888887888888887655 67776663
No 67
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.35 E-value=0.1 Score=41.65 Aligned_cols=108 Identities=17% Similarity=0.085 Sum_probs=63.9
Q ss_pred ccceeecCCchhHhHhhhh-cccccccccccccc--cchhHHHHHHhHh-cceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLK-EEETEAWGVEPYDI--EDADARCKSLVHK-GIVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llk-ee~teAWGVEPyd~--~d~d~~CksLv~k-G~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
.+||++|.||..+-..|.+ -.+.+..|||+.+- +-+..+++..--. -.++.+|+. .++. ..+||+|++.. ..
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~-~~~~-~~~fDlV~~~~-~~- 122 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAE-EFGQ-EEKFDVVTSRA-VA- 122 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHh-hCCC-CCCccEEEEcc-cc-
Confidence 3699999999876555543 34678999988752 3344444443211 234667773 3555 77999999753 21
Q ss_pred cChhhhhchhhhhhhh-ccCceEEEecCCCcchhhhhhhhhc
Q 030814 78 LSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKVAELSKF 118 (171)
Q Consensus 78 LsprylNkTlPeLaRv-s~dgiVif~g~pgq~~ak~~elskf 118 (171)
.+...+.++.|+ ..+|.+++.-.+.+. ..+.+++++
T Consensus 123 ----~~~~~l~~~~~~LkpGG~lv~~~~~~~~-~~l~~~~~~ 159 (187)
T PRK00107 123 ----SLSDLVELCLPLLKPGGRFLALKGRDPE-EEIAELPKA 159 (187)
T ss_pred ----CHHHHHHHHHHhcCCCeEEEEEeCCChH-HHHHHHHHh
Confidence 223455555544 456666666445444 456666553
No 68
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.32 E-value=0.067 Score=40.95 Aligned_cols=96 Identities=14% Similarity=0.171 Sum_probs=59.0
Q ss_pred ccceeecCCchhHhHhhhhc--ccccccccccccccchhHHHHHHhHhcce-eeeeecCCC-------CCCCCcccEEEE
Q 030814 2 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVHKGIV-RVADIKFPL-------PYRAKSFPLVIV 71 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~~d~d~~CksLv~kG~V-RvadikfpL-------PYR~KSFslViv 71 (171)
.+||++|-||+++...+.+. ..+..+|||+.++. + ..|+- -.+|+.-+- .+...+||+|++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 36999999999987766654 34578999998753 1 12332 234664321 144678999986
Q ss_pred ccc--------ccccCh-hhhhchhhhhhhh-ccCceEEEecCCC
Q 030814 72 SDA--------LDYLSP-KYLNKTLPDLARV-ASDGVLIFAGYPG 106 (171)
Q Consensus 72 SDa--------LdyLsp-rylNkTlPeLaRv-s~dgiVif~g~pg 106 (171)
.=+ ++++.. ..+.+++.++.|+ ...|.+++.++..
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 211 233211 2246788888877 4567777766443
No 69
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=95.26 E-value=0.016 Score=39.89 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=45.7
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhc-----ceeeeeecCCC-CCCCCcccEEEEc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKG-----IVRVADIKFPL-PYRAKSFPLVIVS 72 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG-----~VRvadikfpL-PYR~KSFslVivS 72 (171)
.+||+.|-|++.+...+++....+..|+|....- ++-.=..+-+.| -+.++|+.-.. +++..+||+||..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~-~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEA-VELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHH-HHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHH-HHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 3799999999999999997765777787765433 222222222333 36778884433 4788899988864
No 70
>PRK00811 spermidine synthase; Provisional
Probab=95.21 E-value=0.06 Score=45.03 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=57.7
Q ss_pred ccceeecCCchhHhHhhhhc-ccccccccccccccchhHHHHHHhH---hc-------ceeeeeecCCCCCCCCcccEEE
Q 030814 2 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVH---KG-------IVRVADIKFPLPYRAKSFPLVI 70 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke-e~teAWGVEPyd~~d~d~~CksLv~---kG-------~VRvadikfpLPYR~KSFslVi 70 (171)
++||++|.|++++...+++. ...+.-+||...- +-.-|+.... .| -+.++|..--++-..++||+||
T Consensus 78 ~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~--vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 78 KRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER--VVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH--HHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 57999999999999999975 2345555555432 2223443321 12 2455775444454567999998
Q ss_pred EcccccccChh-hh--hchhhhh-hhhccCceEEEe-cCCCc
Q 030814 71 VSDALDYLSPK-YL--NKTLPDL-ARVASDGVLIFA-GYPGQ 107 (171)
Q Consensus 71 vSDaLdyLspr-yl--NkTlPeL-aRvs~dgiVif~-g~pgq 107 (171)
+ |+-|-..|- .| ..-+-++ .+++.+|++++- |.|-.
T Consensus 156 ~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~ 196 (283)
T PRK00811 156 V-DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFY 196 (283)
T ss_pred E-CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCccc
Confidence 5 654433321 11 1112222 356778887763 34443
No 71
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.20 E-value=0.079 Score=44.63 Aligned_cols=93 Identities=14% Similarity=0.071 Sum_probs=57.5
Q ss_pred cceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHhHhc-ceeeeeecCCCCCCCCcccEEEEc-------
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVS------- 72 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv~kG-~VRvadikfpLPYR~KSFslVivS------- 72 (171)
.|||.|.||.++.-.+. .-+....|+|... +.-+..|++..--.+ .+..+|. +.+|.+..+||+|+.-
T Consensus 185 ~vLDp~cGtG~~lieaa-~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~-~~l~~~~~~~D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAG-LMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA-TKLPLSSESVDAIATDPPYGRST 262 (329)
T ss_pred EEEECCCCCCHHHHHHH-HhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch-hcCCcccCCCCEEEECCCCcCcc
Confidence 58999988888765544 3467788887654 222344444322122 3567898 6789999999998761
Q ss_pred ccccccChhhhhchhhhhhhhccCc
Q 030814 73 DALDYLSPKYLNKTLPDLARVASDG 97 (171)
Q Consensus 73 DaLdyLsprylNkTlPeLaRvs~dg 97 (171)
..-....+....+.|.++.|+-..|
T Consensus 263 ~~~~~~~~~l~~~~l~~~~r~Lk~g 287 (329)
T TIGR01177 263 TAAGDGLESLYERSLEEFHEVLKSE 287 (329)
T ss_pred cccCCchHHHHHHHHHHHHHHccCC
Confidence 1111122334567788888876554
No 72
>PRK04266 fibrillarin; Provisional
Probab=95.17 E-value=0.052 Score=44.51 Aligned_cols=96 Identities=21% Similarity=0.254 Sum_probs=60.5
Q ss_pred cceeecCCchhHhHhhhhcc-ccccccccccc--ccchhHHHHHHhHhc-ceeeeeecCCCCCC--CCcccEEEEccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYR--AKSFPLVIVSDALD 76 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee-~teAWGVEPyd--~~d~d~~CksLv~kG-~VRvadikfpLPYR--~KSFslVivSDaLd 76 (171)
+||++|-||..+...|.+.- ++..+|||..+ ++.+..+|+.. .+ ....+|+..|.+|. ..+||+|+ +|.-
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~-~d~~- 150 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIY-QDVA- 150 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEE-ECCC-
Confidence 69999999999887776542 46799998876 44455666543 23 23456876443232 24699998 3432
Q ss_pred ccChhhhhchhhhhhhhcc-CceEEEecCC
Q 030814 77 YLSPKYLNKTLPDLARVAS-DGVLIFAGYP 105 (171)
Q Consensus 77 yLsprylNkTlPeLaRvs~-dgiVif~g~p 105 (171)
.|......|-++.|+-+ .|.++++ .|
T Consensus 151 --~p~~~~~~L~~~~r~LKpGG~lvI~-v~ 177 (226)
T PRK04266 151 --QPNQAEIAIDNAEFFLKDGGYLLLA-IK 177 (226)
T ss_pred --ChhHHHHHHHHHHHhcCCCcEEEEE-Ee
Confidence 25444556788887655 4555553 44
No 73
>PTZ00146 fibrillarin; Provisional
Probab=95.08 E-value=0.071 Score=46.66 Aligned_cols=93 Identities=22% Similarity=0.257 Sum_probs=58.8
Q ss_pred cceeecCCchhHhHhhhhcc--ccccccccccc--ccchhHHHHHHhHhcc-eeeeeecCCCCCC--CCcccEEEEcccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYD--IEDADARCKSLVHKGI-VRVADIKFPLPYR--AKSFPLVIVSDAL 75 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee--~teAWGVEPyd--~~d~d~~CksLv~kG~-VRvadikfpLPYR--~KSFslVivSDaL 75 (171)
+||++|.+|...++.|.+-- +...++||.++ ++|.-..++ .+.++ ..++|+..|..|+ ..+||+|++.-+
T Consensus 135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva- 211 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--KRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA- 211 (293)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--hcCCCEEEECCccChhhhhcccCCCCEEEEeCC-
Confidence 79999999998777776543 45799998774 122333332 12443 3467887777677 468999976543
Q ss_pred cccChhhhhchhhhhhhhcc-CceEEE
Q 030814 76 DYLSPKYLNKTLPDLARVAS-DGVLIF 101 (171)
Q Consensus 76 dyLsprylNkTlPeLaRvs~-dgiVif 101 (171)
.|.+....+.+..|+-+ .|.+++
T Consensus 212 ---~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 212 ---QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred ---CcchHHHHHHHHHHhccCCCEEEE
Confidence 36665556666666544 455444
No 74
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=94.96 E-value=0.078 Score=44.72 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=62.2
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHh-Hhcc-----eeeeeecCCCCCCCCcccEEEEcccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLV-HKGI-----VRVADIKFPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv-~kG~-----VRvadikfpLPYR~KSFslVivSDaL 75 (171)
.+||++|-|-.+..-.+.+.-+..+=||..++-. -..|+..+ +.|+ |++.|. ..+|- +||-|++-.++
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q--~~~a~~~~~~~gl~~~v~v~~~D~-~~~~~---~fD~IvSi~~~ 137 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQ--AEYARERIREAGLEDRVEVRLQDY-RDLPG---KFDRIVSIEMF 137 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--EEEEEES-HHH--HHHHHHHHHCSTSSSTEEEEES-G-GG------S-SEEEEESEG
T ss_pred CEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHH--HHHHHHHHHhcCCCCceEEEEeec-cccCC---CCCEEEEEech
Confidence 3799999999999999997768889999876432 22344333 3453 566665 34444 99999999999
Q ss_pred cccChhhhhchhhhhhhhccC-ceEE
Q 030814 76 DYLSPKYLNKTLPDLARVASD-GVLI 100 (171)
Q Consensus 76 dyLsprylNkTlPeLaRvs~d-giVi 100 (171)
+|+.++++.+-+-.+.|+=+. |+++
T Consensus 138 Ehvg~~~~~~~f~~~~~~LkpgG~~~ 163 (273)
T PF02353_consen 138 EHVGRKNYPAFFRKISRLLKPGGRLV 163 (273)
T ss_dssp GGTCGGGHHHHHHHHHHHSETTEEEE
T ss_pred hhcChhHHHHHHHHHHHhcCCCcEEE
Confidence 999999998888888876554 4443
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=94.74 E-value=0.11 Score=40.40 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=58.0
Q ss_pred ccceeecCCchhHhHhhhhcc-cccccccccccc--cchhHHHHHH-hHhcceeeeeecCCCC--CCCCcccEEEEcccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDI--EDADARCKSL-VHKGIVRVADIKFPLP--YRAKSFPLVIVSDAL 75 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~--~d~d~~CksL-v~kG~VRvadikfpLP--YR~KSFslVivSDaL 75 (171)
..||++|-|+..+...|.+.. +....|||++.- +-+.++++.. +..-.+..+|+..-++ +...+||.|++.=-.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pd 97 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPD 97 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCC
Confidence 368999999999988888653 568899999753 2233333321 1111234466632111 344589988763111
Q ss_pred cccChh-----hh-hchhhhhhhhc-cCceEEEecCC
Q 030814 76 DYLSPK-----YL-NKTLPDLARVA-SDGVLIFAGYP 105 (171)
Q Consensus 76 dyLspr-----yl-NkTlPeLaRvs-~dgiVif~g~p 105 (171)
-|...+ -+ -..+.+++|+- ..|.++|+...
T Consensus 98 pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 98 PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 111111 11 12466778874 47777776533
No 76
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=94.42 E-value=0.096 Score=44.22 Aligned_cols=97 Identities=25% Similarity=0.307 Sum_probs=59.9
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccc--cchhHHHHHHhHhcce--eeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDI--EDADARCKSLVHKGIV--RVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~--~d~d~~CksLv~kG~V--RvadikfpLPYR~KSFslVivSDaLdy 77 (171)
.++|.+|=++......| -..-..-.+++-.+- +-+...|.. ..-| .++|+ |=++=..+||||++|.++-|
T Consensus 45 ~~alEvGCs~G~lT~~L-A~rCd~LlavDis~~Al~~Ar~Rl~~---~~~V~~~~~dv--p~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERL-APRCDRLLAVDISPRALARARERLAG---LPHVEWIQADV--PEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEE--TTSHHHHHH-GGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-T--TT---SS-EEEEEEES-GGG
T ss_pred ceeEecCCCccHHHHHH-HHhhCceEEEeCCHHHHHHHHHhcCC---CCCeEEEECcC--CCCCCCCCeeEEEEehHhHc
Confidence 36789997766665555 466667777665442 223333333 2445 55666 44455789999999999999
Q ss_pred cCh-hhhhchhhhhhh-hccCceEEEecC
Q 030814 78 LSP-KYLNKTLPDLAR-VASDGVLIFAGY 104 (171)
Q Consensus 78 Lsp-rylNkTlPeLaR-vs~dgiVif~g~ 104 (171)
|++ .-|.+.+-.++. ++.+|.+|+...
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 997 578888777765 889999998553
No 77
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.30 E-value=0.13 Score=45.29 Aligned_cols=107 Identities=18% Similarity=0.248 Sum_probs=72.0
Q ss_pred cceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHh-HhcceeeeeecC---CCCCCCCcccEEEEccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKF---PLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv-~kG~VRvadikf---pLPYR~KSFslVivSDaLd 76 (171)
+||++|-|++.+--.|.+ ...+..|||.++ ++.+..|++..- ..--+..+|+.- .+|+...+||+||+ |
T Consensus 300 ~VLDlgcGtG~~sl~la~-~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~-d--- 374 (443)
T PRK13168 300 RVLDLFCGLGNFTLPLAR-QAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL-D--- 374 (443)
T ss_pred EEEEEeccCCHHHHHHHH-hCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE-C---
Confidence 699999999987666664 457888998665 455666665431 112355667642 24576788999874 3
Q ss_pred ccChhh--hhchhhhhhhhccCceEEEecCCCcchhhhhhhhh
Q 030814 77 YLSPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSK 117 (171)
Q Consensus 77 yLspry--lNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elsk 117 (171)
|-| +...+..|.+...++||..+=.|.-...-++.|.+
T Consensus 375 ---PPr~g~~~~~~~l~~~~~~~ivyvSCnp~tlaRDl~~L~~ 414 (443)
T PRK13168 375 ---PPRAGAAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVE 414 (443)
T ss_pred ---cCCcChHHHHHHHHhcCCCeEEEEEeChHHhhccHHHHhh
Confidence 222 45566777788889988888899887655666644
No 78
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=94.25 E-value=0.083 Score=47.27 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=78.7
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHH-HHHHhH-hcceeee--eecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADAR-CKSLVH-KGIVRVA--DIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~-CksLv~-kG~VRva--dikfpLPYR~KSFslVivSDaLdy 77 (171)
++|||||+++++--=+|+..+-..+.||||+..--..-. ++.++. +-.+..- .| -.||- ..+||+||.-=+|=|
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~-~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPN-LGAFDTVFSMGVLYH 194 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccc-cCCcCEEEEeeehhc
Confidence 589999999999999999999999999999987644322 244442 2222222 11 23566 789999999999988
Q ss_pred cChhhhhchhhhhhhh-ccCc-eEEEec-CCCcchhhhhhhhhcCCCccccc
Q 030814 78 LSPKYLNKTLPDLARV-ASDG-VLIFAG-YPGQQRAKVAELSKFGRPAKMRS 126 (171)
Q Consensus 78 LsprylNkTlPeLaRv-s~dg-iVif~g-~pgq~~ak~~elskfgr~ak~Rs 126 (171)
+..-. .+|-+|... -..| +|+-|- .+|-+. .-|-=-+|-||||+
T Consensus 195 rr~Pl--~~L~~Lk~~L~~gGeLvLETlvi~g~~~---~~L~P~~rYa~m~n 241 (315)
T PF08003_consen 195 RRSPL--DHLKQLKDSLRPGGELVLETLVIDGDEN---TVLVPEDRYAKMRN 241 (315)
T ss_pred cCCHH--HHHHHHHHhhCCCCEEEEEEeeecCCCc---eEEccCCcccCCCc
Confidence 75332 244555442 2333 444444 566553 23556689999998
No 79
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.18 E-value=0.24 Score=40.98 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=43.9
Q ss_pred ccceeecCCchhHhHhhhhcc-ccccccccccc--ccchhHHHHHHhHhc--ceeeeeecCCCCCCCCcccEEEE
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIV 71 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd--~~d~d~~CksLv~kG--~VRvadikfpLPYR~KSFslViv 71 (171)
.+||++|.||+.+.-.|.++. ..+..|||.++ ++-+..|++.+--.+ .+..+|+--++ ..++||+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL--AGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC--cCCCccEEEE
Confidence 369999999999888888664 36788888765 444556655432112 23456663333 3458998776
No 80
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=93.97 E-value=0.21 Score=39.25 Aligned_cols=96 Identities=16% Similarity=0.045 Sum_probs=55.4
Q ss_pred ccceeecCCchhHhHhhhhc-ccccccccccccc--cchhHHHHHHhHhc-ceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDI--EDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke-e~teAWGVEPyd~--~d~d~~CksLv~kG-~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
.+||++|.||..+--.|... ......|||+..- +-+..+++.+=-.. .+..+|+. .++. ..+||+|+ |+++.+
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~-~~~~-~~~fD~I~-s~~~~~ 120 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE-DFQH-EEQFDVIT-SRALAS 120 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchh-hccc-cCCccEEE-ehhhhC
Confidence 47999999999654444322 3467999998852 22455555431111 23446663 3443 57899775 566433
Q ss_pred cChhhhhchhhhhhh-hccCceEEEecCC
Q 030814 78 LSPKYLNKTLPDLAR-VASDGVLIFAGYP 105 (171)
Q Consensus 78 LsprylNkTlPeLaR-vs~dgiVif~g~p 105 (171)
+...+..+.| +..+|++++.-.|
T Consensus 121 -----~~~~~~~~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 121 -----LNVLLELTLNLLKVGGYFLAYKGK 144 (181)
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEcCC
Confidence 2334445455 4677777765433
No 81
>PRK03612 spermidine synthase; Provisional
Probab=93.89 E-value=0.16 Score=46.24 Aligned_cols=98 Identities=26% Similarity=0.255 Sum_probs=57.1
Q ss_pred ccceeecCCchhHhHhhhhccc-ccccccccccccchhHHHHH---H-------hHhcc--eeeeeecCCCCCCCCcccE
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEE-TEAWGVEPYDIEDADARCKS---L-------VHKGI--VRVADIKFPLPYRAKSFPL 68 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~-teAWGVEPyd~~d~d~~Cks---L-------v~kG~--VRvadikfpLPYR~KSFsl 68 (171)
++||++|.|++.+...+++..+ .+..+||..+- +-.-|+. + ..... +.++|..--+.-.+++||+
T Consensus 299 ~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~--vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 299 RRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA--MTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH--HHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 4799999999999999998654 67777775332 1222332 1 00112 4566764445555679999
Q ss_pred EEEcccccccChhhhhc-----hhhhh-hhhccCceEEEec
Q 030814 69 VIVSDALDYLSPKYLNK-----TLPDL-ARVASDGVLIFAG 103 (171)
Q Consensus 69 VivSDaLdyLsprylNk-----TlPeL-aRvs~dgiVif~g 103 (171)
||+ |.-|.-.|. .++ -+..+ .++..+|+++...
T Consensus 377 Ii~-D~~~~~~~~-~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIV-DLPDPSNPA-LGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEE-eCCCCCCcc-hhccchHHHHHHHHHhcCCCeEEEEec
Confidence 987 544322221 111 11222 3567888888754
No 82
>PHA03411 putative methyltransferase; Provisional
Probab=93.87 E-value=0.11 Score=45.53 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=51.3
Q ss_pred ccceeecCCchhHhHhhhhcc-cccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccCh
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 80 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLsp 80 (171)
.+||++|.|++.+...+++.. +.+..|||... ++-..|+.....--++.+|+ +.++ +..+||+||+-.-.-++.+
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp--~al~~Ar~n~~~v~~v~~D~-~e~~-~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP--EFARIGKRLLPEAEWITSDV-FEFE-SNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHhCcCCEEEECch-hhhc-ccCCCcEEEEcCCccccCc
Confidence 479999999997766666543 56889998875 34445555444455778888 3433 3568999998665554443
No 83
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=93.83 E-value=0.12 Score=44.61 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=78.5
Q ss_pred ccceeecCCch--hHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccC
Q 030814 2 HKVLHVGPDTC--SVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 2 ~kVLHvGP~tC--~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLs 79 (171)
++||+.|.|+. +|++.+.--.+--+=++.|+-+...+-|.++=. |-+.=+...+=.-+.-||+|+++|.. -.
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g~~~~~Dl~LagDlf--y~ 154 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIGSPPAFDLLLAGDLF--YN 154 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccCCCcceeEEEeecee--cC
Confidence 57999877765 455555543344445778888887777776543 55554444555578899999999984 46
Q ss_pred hhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhh
Q 030814 80 PKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELS 116 (171)
Q Consensus 80 prylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~els 116 (171)
+....+++|=+.|+...|..+++|-||-..--...|.
T Consensus 155 ~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~~l~ 191 (218)
T COG3897 155 HTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKKRLE 191 (218)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEeCCCCCCCchhhhh
Confidence 6678889999999999999999999996544444443
No 84
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=93.61 E-value=0.27 Score=41.14 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=62.1
Q ss_pred cceeecCCchhHhHhhhhcc--cccccccccccccchhHHHHHHhHhc-ce----eeeeecCCCCCCCC---cccEEEEc
Q 030814 3 KVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYDIEDADARCKSLVHKG-IV----RVADIKFPLPYRAK---SFPLVIVS 72 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee--~teAWGVEPyd~~d~d~~CksLv~kG-~V----RvadikfpLPYR~K---SFslVivS 72 (171)
+||++|.|||.....|++.- +....||+.++-- +...++.|.... -+ -.+|+--++++-.+ +..+++.+
T Consensus 66 ~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~m-L~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 66 ELVELGSGSSRKTRLLLDALRQPARYVPIDISADA-LKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred eEEecCCCcchhHHHHHHhhccCCeEEEEECCHHH-HHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 69999999999999998654 4566666555321 222233343322 12 35787433333222 24555555
Q ss_pred c-cccccChhhhhchhhhhhhhccCceEEEec
Q 030814 73 D-ALDYLSPKYLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 73 D-aLdyLsprylNkTlPeLaRvs~dgiVif~g 103 (171)
+ .+-+++|......|.++.++-..|=.+++|
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 678889999999999999886654344444
No 85
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.60 E-value=0.16 Score=41.52 Aligned_cols=94 Identities=23% Similarity=0.240 Sum_probs=57.9
Q ss_pred ccceeecCCchhH---hHhhhhcccccccccccccc--cchhHHHHHHhHhc-ceeeeeecCCCCCCCCcccEEEEcccc
Q 030814 2 HKVLHVGPDTCSV---VSTLLKEEETEAWGVEPYDI--EDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 2 ~kVLHvGP~tC~v---Vs~llkee~teAWGVEPyd~--~d~d~~CksLv~kG-~VRvadikfpLPYR~KSFslVivSDaL 75 (171)
.+||+||.||++. ++.|. ...+..-+||.++- +-+.+++..+-... .+.++|....+|=.. .||.||++=+.
T Consensus 74 ~~VLeIGtGsGY~aAlla~lv-g~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a-pfD~I~v~~a~ 151 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLV-GPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA-PFDRIIVTAAV 151 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHH-STTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG--SEEEEEESSBB
T ss_pred CEEEEecCCCcHHHHHHHHhc-CccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC-CcCEEEEeecc
Confidence 4799999998764 44554 33446679997763 23444444443333 368899888877544 69999999999
Q ss_pred cccChhhhhchhhhhhhhccCceEEE-ecC
Q 030814 76 DYLSPKYLNKTLPDLARVASDGVLIF-AGY 104 (171)
Q Consensus 76 dyLsprylNkTlPeLaRvs~dgiVif-~g~ 104 (171)
+-+.+.++.. +...|..|+ .+.
T Consensus 152 ~~ip~~l~~q-------L~~gGrLV~pi~~ 174 (209)
T PF01135_consen 152 PEIPEALLEQ-------LKPGGRLVAPIGQ 174 (209)
T ss_dssp SS--HHHHHT-------EEEEEEEEEEESS
T ss_pred chHHHHHHHh-------cCCCcEEEEEEcc
Confidence 8877665543 456666655 454
No 86
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=93.57 E-value=0.45 Score=39.17 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=42.5
Q ss_pred cceeecCCchhHhHhhhhcc-ccccccccccc--ccchhHHHHHHhHhcceeeeeecCCCCCC-CCcccEEEE
Q 030814 3 KVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYR-AKSFPLVIV 71 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee-~teAWGVEPyd--~~d~d~~CksLv~kG~VRvadikfpLPYR-~KSFslViv 71 (171)
+||++|.|++.+--.|.+.- +.+.+|||.+. ++.+..|++.. ..-+..+|+.-.+|-. ..+||+||+
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~--~~~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA--GGTVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred EEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCEEEEeechhhcchhcCCCEeEEEE
Confidence 69999999988877776543 45788888653 33345555432 1246778875445421 257998764
No 87
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=93.52 E-value=0.096 Score=45.42 Aligned_cols=107 Identities=16% Similarity=0.066 Sum_probs=72.2
Q ss_pred ccceeecCCchhHhHhhhhcccccccccc--cccccchhHHHHHHh-HhcceeeeeecCCCCCCCCcccEEEEccccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVE--PYDIEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 78 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVE--Pyd~~d~d~~CksLv-~kG~VRvadikfpLPYR~KSFslVivSDaLdyL 78 (171)
.+|||+|-|++.+--.|. ....+.+||| |.-++++..|.+.+= .+--+..+|+.-.++-..++||+||+ |
T Consensus 235 ~~vLDL~cG~G~~~l~la-~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~-D----- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA-GPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV-N----- 307 (374)
T ss_pred CEEEEccCCccHHHHHHh-hcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE-C-----
Confidence 369999999998877777 4557899998 445666676765541 11225666774334433457998765 4
Q ss_pred Chhh--hhchhhhhhhhccCceEEEecCCCcchhhhhhh
Q 030814 79 SPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL 115 (171)
Q Consensus 79 spry--lNkTlPeLaRvs~dgiVif~g~pgq~~ak~~el 115 (171)
.||- ..+++..|.+.+.++||..+-.|+..-.-+..|
T Consensus 308 PPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 308 PPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred CCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh
Confidence 6653 345667788888889999888999874444444
No 88
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=93.38 E-value=0.44 Score=39.89 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=42.0
Q ss_pred cceeecCCchhHhHhhhhcc-ccccccccccc--ccchhHHHHHHhHhc--ceeeeeecCCCCCCCCcccEEEE
Q 030814 3 KVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIV 71 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee-~teAWGVEPyd--~~d~d~~CksLv~kG--~VRvadikfpLPYR~KSFslViv 71 (171)
+||++|.|++.+.-.|.+.. +....|||.++ ++-+..|++..--.. .+..+|+--++ +..+||+||+
T Consensus 124 ~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~--~~~~fD~Iv~ 195 (284)
T TIGR03533 124 RILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL--PGRKYDLIVS 195 (284)
T ss_pred EEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc--CCCCccEEEE
Confidence 69999999999888887653 45778887653 233444444321011 24557763344 3568999986
No 89
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.25 E-value=0.37 Score=37.15 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=54.5
Q ss_pred cceeecCCchhHhHhhhhc-cccccccccccc--ccchhHHHHHHhHhc-ceeeeeecCCCCCCCCcccEEEEccccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDYL 78 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke-e~teAWGVEPyd--~~d~d~~CksLv~kG-~VRvadikfpLPYR~KSFslVivSDaLdyL 78 (171)
.||++|.|++.+-..+.+. .+.+..|||+.. ++-+..+|+.+--.. .+..+|+...++.-...|+.|+. |.
T Consensus 43 ~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~-~~---- 117 (196)
T PRK07402 43 VLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCI-EG---- 117 (196)
T ss_pred EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEE-EC----
Confidence 6899999999986666543 457899999864 344566666442111 12234553223322234566544 22
Q ss_pred ChhhhhchhhhhhhhccCc-eEEEe
Q 030814 79 SPKYLNKTLPDLARVASDG-VLIFA 102 (171)
Q Consensus 79 sprylNkTlPeLaRvs~dg-iVif~ 102 (171)
.+++.+.+.++.|+-+.| .+++.
T Consensus 118 -~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 118 -GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred -CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 245667788888765554 44433
No 90
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=93.25 E-value=0.33 Score=39.27 Aligned_cols=80 Identities=25% Similarity=0.287 Sum_probs=49.6
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhH-hc--ceeeeeecCCCCCCCCccc--EEEEcccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVH-KG--IVRVADIKFPLPYRAKSFP--LVIVSDALDY 77 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~-kG--~VRvadikfpLPYR~KSFs--lVivSDaLdy 77 (171)
.||++|||++.+-..|++. .....|||+.+-- ++ ..+.... .+ -+..+|+ ..+|+. +|+ .+|+|+.--+
T Consensus 32 ~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~-~~-~l~~~~~~~~~v~v~~~D~-~~~~~~--~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 32 VVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRL-AE-ILRKLLSLYERLEVIEGDA-LKVDLP--DFPKQLKVVSNLPYN 105 (253)
T ss_pred EEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHH-HH-HHHHHhCcCCcEEEEECch-hcCChh--HcCCcceEEEcCChh
Confidence 6999999999998888854 4668888875411 11 1222111 12 2345676 344443 455 6778887767
Q ss_pred cChhhhhchhh
Q 030814 78 LSPKYLNKTLP 88 (171)
Q Consensus 78 LsprylNkTlP 88 (171)
++..-+.+.+.
T Consensus 106 i~~~il~~ll~ 116 (253)
T TIGR00755 106 ISSPLIFKLLE 116 (253)
T ss_pred hHHHHHHHHhc
Confidence 77777777764
No 91
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=93.14 E-value=0.26 Score=41.41 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=68.4
Q ss_pred ccceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHhHhcc----eeeeeecCCCCCCCCcccEEEEcccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv~kG~----VRvadikfpLPYR~KSFslVivSDaL 75 (171)
.+|||+|-|++.+--.|.+ .+.+..|||.+. ++.+..|++. .|+ +..+|+.--++-..++||+||+ |
T Consensus 175 ~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~~n~~~---~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~-d-- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAKQSAAE---LGLTNVQFQALDSTQFATAQGEVPDLVLV-N-- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHH---cCCCceEEEEcCHHHHHHhcCCCCeEEEE-C--
Confidence 3699999999887766664 567899999764 3444555543 243 4566763222212357998875 4
Q ss_pred cccChhh--hhchhhhhhhhccCceEEEecCCCcchhhhhhh
Q 030814 76 DYLSPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL 115 (171)
Q Consensus 76 dyLspry--lNkTlPeLaRvs~dgiVif~g~pgq~~ak~~el 115 (171)
.||. .+..+.-|.+...+.||..+..|.-.-.-++.|
T Consensus 248 ---PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 248 ---PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred ---CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence 5655 345557778888889998888998775544444
No 92
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.08 E-value=0.29 Score=38.02 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=60.8
Q ss_pred cceeecCCchhHhHhhhhc--cccccccccccc--ccchhHHHHHHhHhcc--eeeeeecCCCCCCCCcccEEEEccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke--e~teAWGVEPyd--~~d~d~~CksLv~kG~--VRvadikfpLPYR~KSFslVivSDaLd 76 (171)
.||++|.||+.+-..+.+. .+....|||..+ ++-+..+++.+--... +..+|..-.+|....+||+||+.-.
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~-- 120 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG-- 120 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC--
Confidence 6899999998776665543 346788988764 3334555554310011 2334553224554568999998321
Q ss_pred ccChhhhhchhhhhhhh-ccCceEEE-ecCCCcchhhhhhhhhcCC
Q 030814 77 YLSPKYLNKTLPDLARV-ASDGVLIF-AGYPGQQRAKVAELSKFGR 120 (171)
Q Consensus 77 yLsprylNkTlPeLaRv-s~dgiVif-~g~pgq~~ak~~elskfgr 120 (171)
...+...+.++.|+ ...|.+++ +-...+.+.-...|.+.|.
T Consensus 121 ---~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 121 ---SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF 163 (198)
T ss_pred ---cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence 11233456666554 45566554 2234443333334445554
No 93
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.07 E-value=0.33 Score=44.29 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=42.4
Q ss_pred cceeecCCchhHhHhhhhc-cccccccccccc--ccchhHHHHHHhHhcce--eeeeecCCCCCCCCcccEEEE
Q 030814 3 KVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKGIV--RVADIKFPLPYRAKSFPLVIV 71 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke-e~teAWGVEPyd--~~d~d~~CksLv~kG~V--RvadikfpLPYR~KSFslViv 71 (171)
+||++|.||+.+.-.|+++ .+.+..|||.++ ++-+..|++..--.+.| ..+|+--++ ...+||+||+
T Consensus 141 ~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~--~~~~fDlIvs 212 (506)
T PRK01544 141 NILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--EKQKFDFIVS 212 (506)
T ss_pred EEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC--cCCCccEEEE
Confidence 6999999999888777755 456888888764 44455554432111223 345653233 3468999886
No 94
>PLN02823 spermine synthase
Probab=93.03 E-value=0.19 Score=44.11 Aligned_cols=94 Identities=18% Similarity=0.327 Sum_probs=55.5
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhc-------------ceeeeeecCCCCCCCCcccE
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKG-------------IVRVADIKFPLPYRAKSFPL 68 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG-------------~VRvadikfpLPYR~KSFsl 68 (171)
++||.+|-|.|++...+++.. +++--++.|.|...-.+.|+= -|.++|----|.-..++||+
T Consensus 105 k~VLiiGgG~G~~~re~l~~~-----~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHK-----TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CEEEEECCCchHHHHHHHhCC-----CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 579999999999999999743 233333444455444444432 14455543334444678999
Q ss_pred EEEccccccc---------ChhhhhchhhhhhhhccCceEEEec
Q 030814 69 VIVSDALDYL---------SPKYLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 69 VivSDaLdyL---------sprylNkTlPeLaRvs~dgiVif~g 103 (171)
|| .|+-|-. +.+++.+.+ ..+++.+||++.-.
T Consensus 180 Ii-~D~~dp~~~~~~~~Lyt~eF~~~~~--~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 180 II-GDLADPVEGGPCYQLYTKSFYERIV--KPKLNPGGIFVTQA 220 (336)
T ss_pred EE-ecCCCccccCcchhhccHHHHHHHH--HHhcCCCcEEEEec
Confidence 88 4554421 233332111 24688999987654
No 95
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.95 E-value=0.48 Score=40.40 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=42.5
Q ss_pred cceeecCCchhHhHhhhhcc-ccccccccccc--ccchhHHHHHHhHhcc--eeeeeecCCCCCCCCcccEEEEc
Q 030814 3 KVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVS 72 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee-~teAWGVEPyd--~~d~d~~CksLv~kG~--VRvadikfpLPYR~KSFslVivS 72 (171)
+||++|.|++.+--.|.+.. .....|+|.++ ++-+..|++.+--... +..+|+--++| ..+||+||+.
T Consensus 136 ~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsN 208 (307)
T PRK11805 136 RILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSN 208 (307)
T ss_pred EEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEEC
Confidence 69999999999877777653 45677776543 3445555544311111 34567643555 4589999873
No 96
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=92.56 E-value=0.25 Score=40.07 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=54.9
Q ss_pred cceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHH-hHhcceeeeeecCCCCCCCCcccEEEEcccccccC
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSL-VHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksL-v~kG~VRvadikfpLPYR~KSFslVivSDaLdyLs 79 (171)
+||++|-||+++--.++.....++-|||... ++.+..|.+.+ +.+--+..+|+.-.|+....+||+||+ .
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~-------D 128 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFV-------D 128 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEE-------C
Confidence 6999999998776555655567788887543 22333444333 112235557774445544557998863 3
Q ss_pred hhh----hhchhhhhhh---hccCceEEEec
Q 030814 80 PKY----LNKTLPDLAR---VASDGVLIFAG 103 (171)
Q Consensus 80 pry----lNkTlPeLaR---vs~dgiVif~g 103 (171)
|-| .+.++.-|.. +..++||+..-
T Consensus 129 PPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 129 PPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 333 3334444444 46778777553
No 97
>PRK04457 spermidine synthase; Provisional
Probab=92.55 E-value=0.26 Score=40.93 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=54.4
Q ss_pred ccceeecCCchhHhHhhhhcc-cccccccccccccchhHHHHHHhH-h---c--ceeeeeecCCCCCCCCcccEEEEccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVH-K---G--IVRVADIKFPLPYRAKSFPLVIVSDA 74 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~~d~d~~CksLv~-k---G--~VRvadikfpLPYR~KSFslVivSDa 74 (171)
++||++|.|++++...|.+.. +....+||..+- +-..|+.... . . -|.++|..--++=-..+||+||+ |+
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~--vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~-D~ 144 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQ--VIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV-DG 144 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHH--HHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE-eC
Confidence 579999999999888776543 456777776432 2334444322 1 1 24557753223322468999986 55
Q ss_pred cccc-Chhhhh--chhhhh-hhhccCceEEE
Q 030814 75 LDYL-SPKYLN--KTLPDL-ARVASDGVLIF 101 (171)
Q Consensus 75 LdyL-sprylN--kTlPeL-aRvs~dgiVif 101 (171)
.+-- .|..++ ..+.++ .+++.+|++++
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 3311 121222 222333 34778898887
No 98
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=92.16 E-value=0.71 Score=41.14 Aligned_cols=98 Identities=15% Similarity=0.322 Sum_probs=57.2
Q ss_pred ccceeecCCchhHhHhhhhc--cccccccccccc--ccchhHHHHHHhHhcc----eeeeeecCCCC-CCCCcccEEEE-
Q 030814 2 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGI----VRVADIKFPLP-YRAKSFPLVIV- 71 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke--e~teAWGVEPyd--~~d~d~~CksLv~kG~----VRvadikfpLP-YR~KSFslViv- 71 (171)
.+|||+|-|+++.-..+... .+.+..++|.++ ++-+..+++ +.|+ +..+|.. .+| +...+||.|++
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~---r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAK---RLKLSSIEIKIADAE-RLTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH---HcCCCeEEEEECchh-hhhhhhhccCCEEEEC
Confidence 36999999998766555532 345677776653 333444544 3453 4557763 344 55678999996
Q ss_pred ---c---------ccccccChhhhhch-------hhhhhhhc-cCceEEEec
Q 030814 72 ---S---------DALDYLSPKYLNKT-------LPDLARVA-SDGVLIFAG 103 (171)
Q Consensus 72 ---S---------DaLdyLsprylNkT-------lPeLaRvs-~dgiVif~g 103 (171)
| |+..+.+|+.+++. |...+++- ..|+++++-
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 33445555554322 44445543 456666654
No 99
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=92.09 E-value=0.32 Score=42.93 Aligned_cols=105 Identities=25% Similarity=0.275 Sum_probs=59.9
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhccee--e-eeecCCCCCCC-CcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVR--V-ADIKFPLPYRA-KSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VR--v-adikfpLPYR~-KSFslVivSDaLdy 77 (171)
++|||+|.||+-.-=...|.+-.++-|++--++ |=..++.=.++.-|. + +-.--++.-.. +.||+|+ +++|-
T Consensus 164 ~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~--AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIV-ANILA- 239 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQ--AVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIV-ANILA- 239 (300)
T ss_pred CEEEEecCChhHHHHHHHHcCCceEEEecCCHH--HHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEE-ehhhH-
Confidence 579999999986655666667777888654333 233344333333333 1 11112233344 4888764 44432
Q ss_pred cChhhhhchhhhhhhhcc-CceEEEec-CCCcchhhhhh
Q 030814 78 LSPKYLNKTLPDLARVAS-DGVLIFAG-YPGQQRAKVAE 114 (171)
Q Consensus 78 LsprylNkTlPeLaRvs~-dgiVif~g-~pgq~~ak~~e 114 (171)
+=|.+-.|++.|.-+ .|.+|++| +-.| ...|.+
T Consensus 240 ---~vl~~La~~~~~~lkpgg~lIlSGIl~~q-~~~V~~ 274 (300)
T COG2264 240 ---EVLVELAPDIKRLLKPGGRLILSGILEDQ-AESVAE 274 (300)
T ss_pred ---HHHHHHHHHHHHHcCCCceEEEEeehHhH-HHHHHH
Confidence 334456666666554 69999999 5555 444443
No 100
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=91.97 E-value=0.33 Score=39.55 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=53.7
Q ss_pred ccceeecCCchhHhHhhhh--cccccccccccccccchhHHHHHHh-Hhcc-----eeeeeecCCCCC-----CCCcccE
Q 030814 2 HKVLHVGPDTCSVVSTLLK--EEETEAWGVEPYDIEDADARCKSLV-HKGI-----VRVADIKFPLPY-----RAKSFPL 68 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llk--ee~teAWGVEPyd~~d~d~~CksLv-~kG~-----VRvadikfpLPY-----R~KSFsl 68 (171)
++||.+|.++++..-.|.. -+++...++|..+ +.-..++.-+ +.|+ +..+|..--||- -.++||+
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 5799999999874333332 3456888888765 2333444333 3343 445565332321 1468999
Q ss_pred EEEcccccccChhhhhchhhhhhhhccCceEEEec
Q 030814 69 VIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 69 VivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g 103 (171)
|+. |+-.---+.|+...++ .+...|+||+-.
T Consensus 148 Vfi-Da~k~~y~~~~~~~~~---ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFV-DADKPNYVHFHEQLLK---LVKVGGIIAFDN 178 (234)
T ss_pred EEE-CCCHHHHHHHHHHHHH---hcCCCeEEEEEc
Confidence 976 5543333345544432 345677877643
No 101
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=91.94 E-value=0.82 Score=40.47 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=57.7
Q ss_pred ccceeecCCchhHhHhhhh--cccccccccccccccchhHHHHHHhHhcc----eeeeeecCCCCCCCCcccEEEE----
Q 030814 2 HKVLHVGPDTCSVVSTLLK--EEETEAWGVEPYDIEDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIV---- 71 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llk--ee~teAWGVEPyd~~d~d~~CksLv~kG~----VRvadikfpLPYR~KSFslViv---- 71 (171)
.+||++|-|+++.-..|.+ ..+...+|+|.++-- .+.-.+.+-+.|+ +..+|.. .++ ...+||.|++
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~-l~~~~~~~~~~g~~~v~~~~~Da~-~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQK-LEKIRSHASALGITIIETIEGDAR-SFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHH-HHHHHHHHHHhCCCeEEEEeCccc-ccc-cCCCCCEEEEcCCC
Confidence 3699999999975433332 234588898887643 2222233334454 3445663 333 3468999985
Q ss_pred ---------cccccccChhhhh-------chhhhhhhh-ccCceEEEec
Q 030814 72 ---------SDALDYLSPKYLN-------KTLPDLARV-ASDGVLIFAG 103 (171)
Q Consensus 72 ---------SDaLdyLsprylN-------kTlPeLaRv-s~dgiVif~g 103 (171)
-|+.-.++|+.++ +.|-+..|+ ...|+++++-
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 1333456666655 345555554 5678888865
No 102
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=91.70 E-value=0.65 Score=40.24 Aligned_cols=104 Identities=23% Similarity=0.333 Sum_probs=56.3
Q ss_pred ccceeecCCchh--HhHhhhhcccccccccc--cccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCS--VVSTLLKEEETEAWGVE--PYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~--vVs~llkee~teAWGVE--Pyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
++|||||.||.- |.+.+| +-..+.|++ |.-++.+..|++-===...+++. .....-...||+|++ +++--
T Consensus 163 ~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~---~~~~~~~~~~dlvvA-NI~~~ 236 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS---LSEDLVEGKFDLVVA-NILAD 236 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES---CTSCTCCS-EEEEEE-ES-HH
T ss_pred CEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE---EecccccccCCEEEE-CCCHH
Confidence 479999999984 455555 445555554 43334333333211011134432 222233489999863 43322
Q ss_pred cChhhhhchhhhhhhhc-cCceEEEecCCCcchhhhhhh
Q 030814 78 LSPKYLNKTLPDLARVA-SDGVLIFAGYPGQQRAKVAEL 115 (171)
Q Consensus 78 LsprylNkTlPeLaRvs-~dgiVif~g~pgq~~ak~~el 115 (171)
=|=.-.|++.++- .+|.+|++|.-..|+..+.+.
T Consensus 237 ----vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a 271 (295)
T PF06325_consen 237 ----VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEA 271 (295)
T ss_dssp ----HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred ----HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHH
Confidence 2234567776654 478999999777776776654
No 103
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=91.66 E-value=0.44 Score=36.99 Aligned_cols=71 Identities=23% Similarity=0.264 Sum_probs=29.2
Q ss_pred ccceeecCCch--hHhHhhhhcccccccccccccccchhHHHHHHh------HhcceeeeeecCCCC-----CCCCcccE
Q 030814 2 HKVLHVGPDTC--SVVSTLLKEEETEAWGVEPYDIEDADARCKSLV------HKGIVRVADIKFPLP-----YRAKSFPL 68 (171)
Q Consensus 2 ~kVLHvGP~tC--~vVs~llkee~teAWGVEPyd~~d~d~~CksLv------~kG~VRvadikfpLP-----YR~KSFsl 68 (171)
++||.+|-|++ +++...+. .+--|---|.+++-..|+.=+ ..+-|.+.-+...-+ ....+||+
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~~----~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKLF----GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT-----T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred ceEEEECCccchhHHHHHhcc----CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 46888887743 44444440 111232333333333333222 245666665543221 13458999
Q ss_pred EEEccccc
Q 030814 69 VIVSDALD 76 (171)
Q Consensus 69 VivSDaLd 76 (171)
||+||.+=
T Consensus 123 IlasDv~Y 130 (173)
T PF10294_consen 123 ILASDVLY 130 (173)
T ss_dssp EEEES--S
T ss_pred EEEecccc
Confidence 99999983
No 104
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=91.50 E-value=1.1 Score=36.47 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=67.1
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcc-------------------eeeeeecCCCCC-
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-------------------VRVADIKFPLPY- 61 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~-------------------VRvadikfpLPY- 61 (171)
.+||++|-|++-=..-|. +.+-+..|||+++-- .+ .|. -+.|+ +.++|+ |.++-
T Consensus 39 ~rvL~~gCG~G~da~~LA-~~G~~V~avD~s~~A-i~-~~~--~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~-~~l~~~ 112 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLA-EQGHEVLGVELSELA-VE-QFF--AENGLTPQTRQSGEFEHYQAGEITIYCGDF-FALTAA 112 (218)
T ss_pred CeEEEeCCCChHhHHHHH-hCCCeEEEEccCHHH-HH-HHH--HHcCCCccccccccccccccCceEEEECcc-cCCCcc
Confidence 379999999998777776 788899999987542 11 221 23333 257898 66632
Q ss_pred CCCcccEEEEcccccccChhhhhchhhhhhhhccCc
Q 030814 62 RAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDG 97 (171)
Q Consensus 62 R~KSFslVivSDaLdyLsprylNkTlPeLaRvs~dg 97 (171)
-...||+|+-+-++=+|.|..-++.+..|.++-+.|
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 235899999999999999999999999999966555
No 105
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=91.44 E-value=0.33 Score=42.18 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=69.9
Q ss_pred cceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHh-HhcceeeeeecCC---CCCCCCcccEEEEccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFP---LPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv-~kG~VRvadikfp---LPYR~KSFslVivSDaLd 76 (171)
.||++|-|++.+--.|.+ ...+..|||..+ ++++..|++..- ..=-+..+|+.-. ++....+||+||+
T Consensus 295 ~vLDl~cG~G~~sl~la~-~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~----- 368 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAK-QAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL----- 368 (431)
T ss_pred EEEEcCCCcCHHHHHHHH-hCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE-----
Confidence 699999999988777664 456899999753 555666665431 1112455666322 3345678999985
Q ss_pred ccChhh---hhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcC
Q 030814 77 YLSPKY---LNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFG 119 (171)
Q Consensus 77 yLspry---lNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfg 119 (171)
.|-+ ....+..|.++..++||.++-.|.-..--+..|.+-|
T Consensus 369 --dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~tlard~~~l~~~g 412 (431)
T TIGR00479 369 --DPPRKGCAAEVLRTIIELKPERIVYVSCNPATLARDLEFLCKEG 412 (431)
T ss_pred --CcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHHCC
Confidence 3322 2355567778888898887778876644455554433
No 106
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=91.44 E-value=0.32 Score=36.96 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=39.4
Q ss_pred eeeeeecCCCCCCCCcccEEEEcccccccChhhhhchhhhhhhhccCc
Q 030814 50 VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDG 97 (171)
Q Consensus 50 VRvadikfpLPYR~KSFslVivSDaLdyLsprylNkTlPeLaRvs~dg 97 (171)
+.++|+ ..||+.+.+||+|+.+.+|.++. ...+.|-|+.||-+.|
T Consensus 30 ~~~~d~-~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 30 WIEGDA-IDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPG 74 (160)
T ss_pred EEEech-hhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcC
Confidence 567898 68999999999999999999885 4578999999998876
No 107
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=91.18 E-value=2.1 Score=25.63 Aligned_cols=95 Identities=32% Similarity=0.299 Sum_probs=55.3
Q ss_pred ceeecCCchhHh--HhhhhcccccccccccccccchhHHHHHHhHhc----ceeeeeecC-CCCCCC-CcccEEEEcccc
Q 030814 4 VLHVGPDTCSVV--STLLKEEETEAWGVEPYDIEDADARCKSLVHKG----IVRVADIKF-PLPYRA-KSFPLVIVSDAL 75 (171)
Q Consensus 4 VLHvGP~tC~vV--s~llkee~teAWGVEPyd~~d~d~~CksLv~kG----~VRvadikf-pLPYR~-KSFslVivSDaL 75 (171)
+|++|-++.... ..+..+ .....|+++....-....+.... .+ .+..+|..- .+|+.. ..||+++....+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGR-GAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCC-CceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 789999998853 333321 13566766655321122222222 22 355666633 378777 599999555555
Q ss_pred cccChhhhhchhhhhhhhcc-CceEEEec
Q 030814 76 DYLSPKYLNKTLPDLARVAS-DGVLIFAG 103 (171)
Q Consensus 76 dyLsprylNkTlPeLaRvs~-dgiVif~g 103 (171)
.+.. ..+.+.++.|+-. .|.+++..
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEe
Confidence 5555 7777888888775 46665554
No 108
>PLN03075 nicotianamine synthase; Provisional
Probab=90.98 E-value=0.53 Score=41.24 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=65.3
Q ss_pred ccceeecCCchhHhHhhhh---cccccccccccccccchhHHHHHHhH--hcc-----eeeeeecCCCCCCCCcccEEEE
Q 030814 2 HKVLHVGPDTCSVVSTLLK---EEETEAWGVEPYDIEDADARCKSLVH--KGI-----VRVADIKFPLPYRAKSFPLVIV 71 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llk---ee~teAWGVEPyd~~d~d~~CksLv~--kG~-----VRvadikfpLPYR~KSFslViv 71 (171)
++||+||-|....-+-++. -.++..-|+|... ++-...+.+++ .|+ .+++|+. .++.....||+|++
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~--~ai~~Ar~~~~~~~gL~~rV~F~~~Da~-~~~~~l~~FDlVF~ 201 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP--SANDVARRLVSSDPDLSKRMFFHTADVM-DVTESLKEYDVVFL 201 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHhhhccCccCCcEEEECchh-hcccccCCcCEEEE
Confidence 5799999996644444332 3556677877654 23445555663 232 3446763 34434678999999
Q ss_pred cccccccChhhhhchhhhhhhhccCceEEEecC
Q 030814 72 SDALDYLSPKYLNKTLPDLARVASDGVLIFAGY 104 (171)
Q Consensus 72 SDaLdyLsprylNkTlPeLaRvs~dgiVif~g~ 104 (171)
- ||=|++++.=.+.|..++|.-+.|=+++.|.
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 8 9999987777889999999666666666664
No 109
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=90.88 E-value=0.26 Score=40.31 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=44.3
Q ss_pred ccceeecCCchhHhHhhhhccccccccccccc-ccc-hhHHHHHHhHhcc--eeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD-IED-ADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd-~~d-~d~~CksLv~kG~--VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
..||++|||++.+-..|.+. ..+..|||..+ +-+ +..+++. .+. +..+|+ ..+|+. +|++||+ +.-=|
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~-~~~~~~--~~d~Vv~-NlPy~ 102 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDA-LKVDLP--EFNKVVS-NLPYQ 102 (258)
T ss_pred CeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecc-ccCCch--hceEEEE-cCCcc
Confidence 36999999999999888866 66888888764 111 2222221 132 345677 445543 4776654 54434
Q ss_pred cChhhhhc
Q 030814 78 LSPKYLNK 85 (171)
Q Consensus 78 LsprylNk 85 (171)
++...+.+
T Consensus 103 i~s~~~~~ 110 (258)
T PRK14896 103 ISSPITFK 110 (258)
T ss_pred cCcHHHHH
Confidence 44333333
No 110
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.79 E-value=0.72 Score=40.18 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=50.7
Q ss_pred ccceeecCCchhHhHhhhhccc--ccccccccccc--cchhHHHHHHhHhcc----eeeeeecCCCCCCCCcccEEEEcc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEE--TEAWGVEPYDI--EDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVSD 73 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~--teAWGVEPyd~--~d~d~~CksLv~kG~----VRvadikfpLPYR~KSFslVivSD 73 (171)
.+||++|.||..+...|.+.-+ ....|||..+- +.+..+.+ +.|+ +..+|..-.+| ..++||+||++-
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~---~~g~~nV~~i~gD~~~~~~-~~~~fD~Ii~~~ 157 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVR---RLGIENVIFVCGDGYYGVP-EFAPYDVIFVTV 157 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH---HcCCCcEEEEeCChhhccc-ccCCccEEEECC
Confidence 3799999999776666654332 35788887752 11222222 2343 23456533333 346899999987
Q ss_pred cccccChhhhhchhhhhhhhccCceEEE
Q 030814 74 ALDYLSPKYLNKTLPDLARVASDGVLIF 101 (171)
Q Consensus 74 aLdyLsprylNkTlPeLaRvs~dgiVif 101 (171)
+++.+.. .+ +..+..+|.+++
T Consensus 158 g~~~ip~-~~------~~~LkpgG~Lvv 178 (322)
T PRK13943 158 GVDEVPE-TW------FTQLKEGGRVIV 178 (322)
T ss_pred chHHhHH-HH------HHhcCCCCEEEE
Confidence 7665532 22 123456776555
No 111
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.61 E-value=0.23 Score=44.45 Aligned_cols=39 Identities=33% Similarity=0.639 Sum_probs=34.9
Q ss_pred CCcccEEEEcccccccChhhhhchhhhhhhhccCc-eEEE
Q 030814 63 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDG-VLIF 101 (171)
Q Consensus 63 ~KSFslVivSDaLdyLsprylNkTlPeLaRvs~dg-iVif 101 (171)
+.|||.++.||+.|||+|..+|...-+|.|+++.| -|++
T Consensus 293 ~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 293 PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67899999999999999999999999999998765 5555
No 112
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=90.48 E-value=0.42 Score=42.42 Aligned_cols=71 Identities=25% Similarity=0.322 Sum_probs=51.2
Q ss_pred ceeecCCchhHhHhhhhcccccccccccc--cccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccC
Q 030814 4 VLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 4 VLHvGP~tC~vVs~llkee~teAWGVEPy--d~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLs 79 (171)
+||||=||.-.-+-|. +++-.--||+-+ -++-+-. ..+. |-+-..|.-.+||+|+.+||-||+--|+.+|-
T Consensus 54 iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~---~e~e-gdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 54 ILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVE---RELE-GDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred EEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHH---hhhh-cCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 7999999976555444 666544476544 3443222 4455 77778899999999999999999988888773
No 113
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=90.31 E-value=1.3 Score=38.55 Aligned_cols=112 Identities=22% Similarity=0.350 Sum_probs=75.3
Q ss_pred cceeecCCchhHhHhhhhccccc-ccccccccccchhHHHHHHhH-hcc-----eeeeeecCCCCCCCCcccEEEEcccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETE-AWGVEPYDIEDADARCKSLVH-KGI-----VRVADIKFPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~te-AWGVEPyd~~d~d~~CksLv~-kG~-----VRvadikfpLPYR~KSFslVivSDaL 75 (171)
+||+.|.|+..+.-+|.+|+=+. -=||+-++-- ++ -++.+-+ .|. -.++||--| -+-+++||+|+==-++
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~A-V~-LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKA-VE-LAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTL 146 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHH-HH-HHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCce
Confidence 79999999999999999988666 5677655422 11 1333332 232 358999777 8999999999987777
Q ss_pred ccc--Chhhhhchh-------hhhhhhccCceEEEecCCCcchhhhhhhhhcC
Q 030814 76 DYL--SPKYLNKTL-------PDLARVASDGVLIFAGYPGQQRAKVAELSKFG 119 (171)
Q Consensus 76 dyL--sprylNkTl-------PeLaRvs~dgiVif~g~pgq~~ak~~elskfg 119 (171)
|-+ +|.-+|+-+ .-| ++++||.++++--=.+-.-+.+..++|
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~l--l~~~gifvItSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKL--LSPGGIFVITSCNFTKDELVEEFENFN 197 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhc--cCCCcEEEEEecCccHHHHHHHHhcCC
Confidence 764 565555442 222 468999888883333335556665555
No 114
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=90.14 E-value=0.72 Score=43.56 Aligned_cols=118 Identities=17% Similarity=0.112 Sum_probs=65.4
Q ss_pred ccceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHH-hH--hcceeeeeecCCCCCCCCcccEEEEc----
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSL-VH--KGIVRVADIKFPLPYRAKSFPLVIVS---- 72 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksL-v~--kG~VRvadikfpLPYR~KSFslVivS---- 72 (171)
++||++|-+||++--.+.+.+..+.-|||.+. ++-+..|.+.. +. +-.+..+|+--.|.-..++||+||+-
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f 619 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTF 619 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCC
Confidence 47999999999998888876556788888654 33344444322 00 11234577622232125689999862
Q ss_pred -------ccccccC-hhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcCCC
Q 030814 73 -------DALDYLS-PKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRP 121 (171)
Q Consensus 73 -------DaLdyLs-prylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfgr~ 121 (171)
+..+... -+-|+..... .+...|++++.+.+.+.....+.+.+.|+.
T Consensus 620 ~~~~~~~~~~~~~~~y~~l~~~a~~--lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~ 674 (702)
T PRK11783 620 SNSKRMEDSFDVQRDHVALIKDAKR--LLRPGGTLYFSNNKRGFKMDEEGLAKLGLK 674 (702)
T ss_pred CCCCccchhhhHHHHHHHHHHHHHH--HcCCCCEEEEEeCCccCChhHHHHHhCCCe
Confidence 1111000 0112222222 356789998888776654444444444443
No 115
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=90.11 E-value=1.7 Score=35.29 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=67.3
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcc-------------------eeeeeecCCCCCC-
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-------------------VRVADIKFPLPYR- 62 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~-------------------VRvadikfpLPYR- 62 (171)
+||++|=|+.-=+.-|- +.+-+..|||.++.- ++. ..-+.|+ +.++|+ |.++--
T Consensus 37 rvLd~GCG~G~da~~LA-~~G~~V~gvD~S~~A-i~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~-~~~~~~~ 110 (213)
T TIGR03840 37 RVFVPLCGKSLDLAWLA-EQGHRVLGVELSEIA-VEQ---FFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF-FALTAAD 110 (213)
T ss_pred eEEEeCCCchhHHHHHH-hCCCeEEEEeCCHHH-HHH---HHHHcCCCcceeccccceeeecCceEEEEccC-CCCCccc
Confidence 69999999887666665 788899999977643 111 1112222 258898 666532
Q ss_pred CCcccEEEEcccccccChhhhhchhhhhhhhccC-ceEEEec
Q 030814 63 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVASD-GVLIFAG 103 (171)
Q Consensus 63 ~KSFslVivSDaLdyLsprylNkTlPeLaRvs~d-giVif~g 103 (171)
...||.|+-.-++-+|.|..-.+.+..+.|+-+. |++++.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 3479999999989999999888888888887665 5555554
No 116
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=89.36 E-value=1.7 Score=38.16 Aligned_cols=66 Identities=9% Similarity=0.129 Sum_probs=40.6
Q ss_pred ccceeecCCchhHhHhhhhcc-cccccccccccc--cchhHHHHHHhHhcc---e--eeeeecCCCCC--CCCcccEEEE
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDI--EDADARCKSLVHKGI---V--RVADIKFPLPY--RAKSFPLVIV 71 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~--~d~d~~CksLv~kG~---V--RvadikfpLPY--R~KSFslViv 71 (171)
.+||++|-|+++.-..+.+.- .+..+|+|.++- +-+..+++ +.|+ + ..+|. +.++. ...+||.||+
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~---r~g~~~~v~~~~~d~-~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLK---RLGLTIKAETKDGDG-RGPSQWAENEQFDRILL 315 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEecccc-ccccccccccccCEEEE
Confidence 369999999997776666432 468889888653 22334443 3453 3 22444 22333 4678999985
No 117
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=89.26 E-value=0.68 Score=39.17 Aligned_cols=73 Identities=25% Similarity=0.430 Sum_probs=46.1
Q ss_pred cceeecCCchhHhHhhhhcccc-ccccccccc--ccchhHHHHHHhHhcceeeeeecC--CCCCCCCcccEEEEcccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEET-EAWGVEPYD--IEDADARCKSLVHKGIVRVADIKF--PLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~t-eAWGVEPyd--~~d~d~~CksLv~kG~VRvadikf--pLPYR~KSFslVivSDaLdy 77 (171)
+||++|.||+.|.-.|.++... +.+|++-+. ++=|..|++. .|++++-.+.- =-|.|. .||++++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~---~~l~~~~~~~~dlf~~~~~-~fDlIVs------ 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER---NGLVRVLVVQSDLFEPLRG-KFDLIVS------ 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH---cCCccEEEEeeecccccCC-ceeEEEe------
Confidence 5999999999999999988764 777766543 3334444443 34333333322 234555 8998764
Q ss_pred cChhhhhch
Q 030814 78 LSPKYLNKT 86 (171)
Q Consensus 78 LsprylNkT 86 (171)
.|-|+...
T Consensus 183 -NPPYip~~ 190 (280)
T COG2890 183 -NPPYIPAE 190 (280)
T ss_pred -CCCCCCCc
Confidence 46677665
No 118
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=88.49 E-value=1.2 Score=33.91 Aligned_cols=68 Identities=22% Similarity=0.236 Sum_probs=39.0
Q ss_pred ccceeecCCchhHhHhhhhccccc--cccccccc--ccchhHHHHHHhHh-cceeeeeecCCCCCCCCcccEEEEc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETE--AWGVEPYD--IEDADARCKSLVHK-GIVRVADIKFPLPYRAKSFPLVIVS 72 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~te--AWGVEPyd--~~d~d~~CksLv~k-G~VRvadikfpLPYR~KSFslVivS 72 (171)
.+||++|.|+. +++-.+...... ..++|-.. ++-+..|++..--. --+..+|+.-++| .++||+||.-
T Consensus 33 ~~vLDlG~G~G-~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~N 105 (170)
T PF05175_consen 33 GRVLDLGCGSG-VISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSN 105 (170)
T ss_dssp CEEEEETSTTS-HHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE-
T ss_pred CeEEEecCChH-HHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEc
Confidence 47999999986 556555554433 66665542 22233333322111 1234567755555 8999998873
No 119
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=88.34 E-value=1.6 Score=38.12 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=56.2
Q ss_pred cceeecCCchhHhHhhhhcc-ccccccccccc--ccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccc--
Q 030814 3 KVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY-- 77 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee-~teAWGVEPyd--~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdy-- 77 (171)
+|||+|-|++.+-..+.+.. +.+..|||... ++.+..+++.---.+.+..+|+ +. .-..+||+||+.-.+-+
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~-~~--~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNV-FS--DIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccc-cc--ccCCCccEEEECCCccCCc
Confidence 69999999998887777653 35788888764 2223333332111234556676 22 22578999998643321
Q ss_pred -cChhhhhchhhhhhh-hccCceEEEec
Q 030814 78 -LSPKYLNKTLPDLAR-VASDGVLIFAG 103 (171)
Q Consensus 78 -LsprylNkTlPeLaR-vs~dgiVif~g 103 (171)
.+..-.-+.+.+..| +..+|.++++.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 111222233444444 46677776665
No 120
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=88.03 E-value=1.3 Score=37.06 Aligned_cols=100 Identities=19% Similarity=0.152 Sum_probs=54.1
Q ss_pred ccceeecCCchhHhHhhhhc--ccccccccccccccchhHHHHHHhHhcceeeeee-------cCCCCCCCCcccEEEEc
Q 030814 2 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVHKGIVRVADI-------KFPLPYRAKSFPLVIVS 72 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~~d~d~~CksLv~kG~VRvadi-------kfpLPYR~KSFslVivS 72 (171)
++|||+|-|+...+=..... .-.+.-.||+++- +-.-++.|++.+-- .... .-.++.... ||||+|
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~--~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~--DLvi~s 109 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPE--MLELAKRLLRAGPN-NRNAEWRRVLYRDFLPFPPD--DLVIAS 109 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHH--HHHHHHHHHhcccc-cccchhhhhhhcccccCCCC--cEEEEe
Confidence 46899987765544333210 2223334444321 23445666665431 1111 011233223 999999
Q ss_pred ccccccChhhhhchhhhhhhhccCceE-EEecCCC
Q 030814 73 DALDYLSPKYLNKTLPDLARVASDGVL-IFAGYPG 106 (171)
Q Consensus 73 DaLdyLsprylNkTlPeLaRvs~dgiV-if~g~pg 106 (171)
.+|.-|.+......+-.|-+..++.|| |--|.|.
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~~LVlVEpGt~~ 144 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAPVLVLVEPGTPA 144 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccCcEEEEcCCChH
Confidence 999999997777777777555555333 3345443
No 121
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=88.02 E-value=0.64 Score=37.94 Aligned_cols=102 Identities=25% Similarity=0.312 Sum_probs=62.4
Q ss_pred ccceeecCCchhHhHhhhhc--ccccccccccccccchhHHHHHHhHhcc-----eeeeeecCCCCC-----CCCcccEE
Q 030814 2 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVHKGI-----VRVADIKFPLPY-----RAKSFPLV 69 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~~d~d~~CksLv~kG~-----VRvadikfpLPY-----R~KSFslV 69 (171)
++||.+|+.+++---.|.+. +++.-+-||+.+ +-++---+.+-+.|+ ++++|-.--||- ....||+|
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~-~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP-ERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH-HHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcH-HHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 58999999998876666643 467888998865 324333333444454 444554333341 23479999
Q ss_pred EEcccccccChhhhhchhhhhhhhccCceEEEec--CCCcc
Q 030814 70 IVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG--YPGQQ 108 (171)
Q Consensus 70 ivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g--~pgq~ 108 (171)
+. |+=.---+.|++..+| .+...|+||+-. ++|..
T Consensus 126 Fi-Da~K~~y~~y~~~~~~---ll~~ggvii~DN~l~~G~V 162 (205)
T PF01596_consen 126 FI-DADKRNYLEYFEKALP---LLRPGGVIIADNVLWRGSV 162 (205)
T ss_dssp EE-ESTGGGHHHHHHHHHH---HEEEEEEEEEETTTGGGGG
T ss_pred EE-cccccchhhHHHHHhh---hccCCeEEEEcccccccee
Confidence 86 3333333467777765 566788888765 55543
No 122
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=86.71 E-value=2.9 Score=38.58 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=40.3
Q ss_pred cceeecCCchhHhHhhhhc-ccccccccccccc--cchhHHHHHHhHhcc---eeeeeecC-CCCCCCCcccEEEE
Q 030814 3 KVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDI--EDADARCKSLVHKGI---VRVADIKF-PLPYRAKSFPLVIV 71 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke-e~teAWGVEPyd~--~d~d~~CksLv~kG~---VRvadikf-pLPYR~KSFslViv 71 (171)
+|||+|.||+.+-..|.++ .+.+..|+|.++- +-+..|++ +.|. +..+|+-- .+| ...+||+||+
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~---~~g~rV~fi~gDl~e~~l~-~~~~FDLIVS 325 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA---DLGARVEFAHGSWFDTDMP-SEGKWDIIVS 325 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCcEEEEEcchhccccc-cCCCccEEEE
Confidence 6999999999887777755 3567888887642 22333433 2342 34466621 233 2357999886
No 123
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=86.51 E-value=1.1 Score=37.13 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=47.5
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhc--ceeeeeecCCCCCCCCcccEEEEcccccccCh
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 80 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG--~VRvadikfpLPYR~KSFslVivSDaLdyLsp 80 (171)
.||++|||++.+-..|++. ..+..|||..+ +.-..++.....+ -+..+|+ ..+|+..-. ..+|+++.==|++.
T Consensus 45 ~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~--~~~~~~~~~~~~~~v~~i~~D~-~~~~~~~~~-~~~vv~NlPY~iss 119 (272)
T PRK00274 45 NVLEIGPGLGALTEPLLER-AAKVTAVEIDR--DLAPILAETFAEDNLTIIEGDA-LKVDLSELQ-PLKVVANLPYNITT 119 (272)
T ss_pred eEEEeCCCccHHHHHHHHh-CCcEEEEECCH--HHHHHHHHhhccCceEEEEChh-hcCCHHHcC-cceEEEeCCccchH
Confidence 6999999999888888865 45788888764 2222333322212 2456776 344543211 45566765555555
Q ss_pred hhhhchhh
Q 030814 81 KYLNKTLP 88 (171)
Q Consensus 81 rylNkTlP 88 (171)
..+.+.|.
T Consensus 120 ~ii~~~l~ 127 (272)
T PRK00274 120 PLLFHLLE 127 (272)
T ss_pred HHHHHHHh
Confidence 55655553
No 124
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.43 E-value=3.3 Score=35.04 Aligned_cols=99 Identities=21% Similarity=0.261 Sum_probs=66.7
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcc----eeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~----VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
.+||+||.|+.+-..-|=+- -...+.||-+.-= ++.-=+.|.+-|+ |+++|-...+|=. -.||.++|+=+-+.
T Consensus 74 ~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L-~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~-aPyD~I~Vtaaa~~ 150 (209)
T COG2518 74 DRVLEIGTGSGYQAAVLARL-VGRVVSIERIEEL-AEQARRNLETLGYENVTVRHGDGSKGWPEE-APYDRIIVTAAAPE 150 (209)
T ss_pred CeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHH-HHHHHHHHHHcCCCceEEEECCcccCCCCC-CCcCEEEEeeccCC
Confidence 47999999998754433322 2388888876532 3333344888888 7888988887743 36999999999987
Q ss_pred cChhhhhchhhhhhhhccCc-eEEEecCCCcchh
Q 030814 78 LSPKYLNKTLPDLARVASDG-VLIFAGYPGQQRA 110 (171)
Q Consensus 78 LsprylNkTlPeLaRvs~dg-iVif~g~pgq~~a 110 (171)
+.+.-++ -+...| +||-+|.++.|+.
T Consensus 151 vP~~Ll~-------QL~~gGrlv~PvG~~~~q~l 177 (209)
T COG2518 151 VPEALLD-------QLKPGGRLVIPVGSGPAQRL 177 (209)
T ss_pred CCHHHHH-------hcccCCEEEEEEccCCcEEE
Confidence 7665443 344455 5677886665543
No 125
>PLN02366 spermidine synthase
Probab=86.38 E-value=1.7 Score=37.64 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=51.5
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccc-hhHHHHHHhHh---c----c--eeeeeecCCCC-CCCCcccEEE
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED-ADARCKSLVHK---G----I--VRVADIKFPLP-YRAKSFPLVI 70 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d-~d~~CksLv~k---G----~--VRvadikfpLP-YR~KSFslVi 70 (171)
++||++|-|++++++.+++-.. ...|.--||+. +-.-|+..... | . +.++|-.--+. ...++||+||
T Consensus 93 krVLiIGgG~G~~~rellk~~~--v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 93 KKVLVVGGGDGGVLREIARHSS--VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CeEEEEcCCccHHHHHHHhCCC--CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 5799999999999999997532 22232233332 33455554321 2 2 34466311111 1146899998
Q ss_pred EcccccccCh-------hhhhchhhhhhhhccCceEEE
Q 030814 71 VSDALDYLSP-------KYLNKTLPDLARVASDGVLIF 101 (171)
Q Consensus 71 vSDaLdyLsp-------rylNkTlPeLaRvs~dgiVif 101 (171)
+ |+-|-..| +++... ..++..+|+++.
T Consensus 171 ~-D~~dp~~~~~~L~t~ef~~~~---~~~L~pgGvlv~ 204 (308)
T PLN02366 171 V-DSSDPVGPAQELFEKPFFESV---ARALRPGGVVCT 204 (308)
T ss_pred E-cCCCCCCchhhhhHHHHHHHH---HHhcCCCcEEEE
Confidence 6 76654333 222211 135778898865
No 126
>PHA03412 putative methyltransferase; Provisional
Probab=86.32 E-value=1 Score=38.83 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=42.6
Q ss_pred cceeecCCchhHhHhhhhc----ccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEE
Q 030814 3 KVLHVGPDTCSVVSTLLKE----EETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIV 71 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke----e~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslViv 71 (171)
+||++|-||+.+--.+.++ ...+..|||..+. +-.-|+..+..--+..+|+.. .+. ..+||+||+
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~--Al~~Ar~n~~~~~~~~~D~~~-~~~-~~~FDlIIs 120 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT--YYKLGKRIVPEATWINADALT-TEF-DTLFDMAIS 120 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH--HHHHHHhhccCCEEEEcchhc-ccc-cCCccEEEE
Confidence 7999999999887766643 3456777765433 334444444445577788843 233 468999986
No 127
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=86.21 E-value=4.9 Score=36.62 Aligned_cols=136 Identities=13% Similarity=0.062 Sum_probs=81.2
Q ss_pred cceeecCCchhHhHhhhhcc-cccccccccccccchhHHHHHHhHhcc----eeeeeecC-CCCCCCCcccEEEEccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKGI----VRVADIKF-PLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~~d~d~~CksLv~kG~----VRvadikf-pLPYR~KSFslVivSDaLd 76 (171)
.+|+||.|++...-.|-+.. +....|||.+.-- +..-.+...+.|+ +..+|... .-+..+.|||.|++.=-.-
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~-i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdP 203 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPS-IEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVP 203 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHH-HHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCC
Confidence 58999999999988887654 5788999998632 2233333344553 34556642 2245688999998641111
Q ss_pred ccChhh----hhchhhhhhhhcc-CceEEEec-CCCcchhhhhhhhhcCCC-------ccccchhHHHHHHHHhcc
Q 030814 77 YLSPKY----LNKTLPDLARVAS-DGVLIFAG-YPGQQRAKVAELSKFGRP-------AKMRSSSWWIRYFVQTSL 139 (171)
Q Consensus 77 yLspry----lNkTlPeLaRvs~-dgiVif~g-~pgq~~ak~~elskfgr~-------ak~RsssWW~r~F~q~~l 139 (171)
+...+. .-..|-+++|+=+ +|.+.+.. .+.+-.--..++..++.. .-.+-.|++++.|...|.
T Consensus 204 W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~~~~~~~~i~TkyE~r~~~~G~ 279 (390)
T PRK14121 204 WDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEIKKNAQLEVSSKYEDRWKKQNK 279 (390)
T ss_pred ccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeecccCCCCCCCCHHHHHHHHCCC
Confidence 211121 1245667778754 56555543 555554444455444321 123557999999998885
No 128
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=85.55 E-value=1.3 Score=42.18 Aligned_cols=105 Identities=25% Similarity=0.376 Sum_probs=82.2
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeee--cCCCCCCCCcccEEEEcccccccC
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADI--KFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadi--kfpLPYR~KSFslVivSDaLdyLs 79 (171)
+.+||||=|+.+--..|+ +.+--+-.+.|+|.- ...++--+++|+--+-.+ ..-|||=+.+||+|=.|..+.-=.
T Consensus 119 R~~LDvGcG~aSF~a~l~-~r~V~t~s~a~~d~~--~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~ 195 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLL-ERNVTTMSFAPNDEH--EAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWH 195 (506)
T ss_pred EEEEeccceeehhHHHHh-hCCceEEEcccccCC--chhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccch
Confidence 679999999999999999 777778888888654 455666678897655433 568999999999999998876554
Q ss_pred hhhhhchhhhhhhhc-cCceEEEecCCCcchh
Q 030814 80 PKYLNKTLPDLARVA-SDGVLIFAGYPGQQRA 110 (171)
Q Consensus 80 prylNkTlPeLaRvs-~dgiVif~g~pgq~~a 110 (171)
+.. -..|-|+-||= ..|..+.+|-|-++|.
T Consensus 196 ~~~-g~~l~evdRvLRpGGyfv~S~ppv~~r~ 226 (506)
T PF03141_consen 196 PND-GFLLFEVDRVLRPGGYFVLSGPPVYQRT 226 (506)
T ss_pred hcc-cceeehhhhhhccCceEEecCCcccccc
Confidence 443 35778888875 5789999999988543
No 129
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=84.27 E-value=1.5 Score=38.67 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=44.8
Q ss_pred cceeecCCchhHhHhhhhccc-cccccccccc--ccchhHHHHHHhHhcceeeeeecCCCC-CCCCcccEEEE
Q 030814 3 KVLHVGPDTCSVVSTLLKEEE-TEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLP-YRAKSFPLVIV 71 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~-teAWGVEPyd--~~d~d~~CksLv~kG~VRvadikfpLP-YR~KSFslViv 71 (171)
+||++|.|+++.-..|.+... ...+|+|... ++.+..+++.+--.-.+..+|..-+.+ +...+||.|++
T Consensus 247 ~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 247 RVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred EEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEE
Confidence 699999999998877775543 5788888765 344555554431111356678754333 34678999983
No 130
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=83.81 E-value=1.7 Score=37.30 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=46.4
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHH-HhHhc---c--eeeeeecCCCCCCCCcccEEEEccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKS-LVHKG---I--VRVADIKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~Cks-Lv~kG---~--VRvadikfpLPYR~KSFslVivSDaLd 76 (171)
.||+||||++.+-..|++. ..+.+|||..+- .-..++. +-..| - +..+|+ ...++ .+||.|| ++.==
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~--li~~l~~~~~~~~~~~~v~ii~~Da-l~~~~--~~~d~Vv-aNlPY 111 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPR--MVAELKKRFQNSPLASKLEVIEGDA-LKTEF--PYFDVCV-ANVPY 111 (294)
T ss_pred EEEEecCchHHHHHHHHHh-CCcEEEEECCHH--HHHHHHHHHHhcCCCCcEEEEECCH-hhhcc--cccCEEE-ecCCc
Confidence 6999999999999998854 567888876531 1112222 21222 2 445666 22232 2688554 67666
Q ss_pred ccChhhhhchh
Q 030814 77 YLSPKYLNKTL 87 (171)
Q Consensus 77 yLsprylNkTl 87 (171)
|++..-+-+.|
T Consensus 112 ~Istpil~~ll 122 (294)
T PTZ00338 112 QISSPLVFKLL 122 (294)
T ss_pred ccCcHHHHHHH
Confidence 66665555555
No 131
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=83.51 E-value=0.64 Score=38.76 Aligned_cols=99 Identities=22% Similarity=0.266 Sum_probs=57.0
Q ss_pred ccceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHhHhcce---eeeeecC----CCCCCCCcccEEEEc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIV---RVADIKF----PLPYRAKSFPLVIVS 72 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv~kG~V---Rvadikf----pLPYR~KSFslVivS 72 (171)
+.|||+|-+|++.-.-|++..-....||++.. |.. .|-..-.| ...||+. .++-.--.||++|.|
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~------~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS 150 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE------KLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFIS 150 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH------HHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEee
Confidence 36999999999999988876567788888876 331 22222221 2223331 011011256666666
Q ss_pred ccccccChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhh
Q 030814 73 DALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSK 117 (171)
Q Consensus 73 DaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elsk 117 (171)
-.+ .||++.+..++|.+|+-=-| |=.+.-.++.|
T Consensus 151 ~~~----------~l~~i~~~l~~~~~~~L~KP-qFE~~~~~~~~ 184 (228)
T TIGR00478 151 LIS----------ILPELDLLLNPNDLTLLFKP-QFEAGREKKNK 184 (228)
T ss_pred hHh----------HHHHHHHHhCcCeEEEEcCh-HhhhcHhhcCc
Confidence 433 48888887776544433333 44354455655
No 132
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=83.43 E-value=1.2 Score=36.92 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=58.7
Q ss_pred ccceeecCCchhHhHhhhhcc-cccccccccccccchhHHHHHHhH---hc------ceeeeeecCCCCCCCC-cccEEE
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVH---KG------IVRVADIKFPLPYRAK-SFPLVI 70 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~~d~d~~CksLv~---kG------~VRvadikfpLPYR~K-SFslVi 70 (171)
++||-+|-|.+++++.|++.. ..+...||.-+. +-.-|+.... .+ -|.++|-.-=|-=..+ .||+||
T Consensus 78 ~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~--Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 78 KRVLIIGGGDGGTARELLKHPPVESITVVEIDPE--VVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp -EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HH--HHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CceEEEcCCChhhhhhhhhcCCcceEEEEecChH--HHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 589999999999999999876 345666665432 2334554432 22 2344443211211223 899887
Q ss_pred Eccccc-------ccChhhhhchhhhhhhhccCceEEEec-CCCcchhhhhhh
Q 030814 71 VSDALD-------YLSPKYLNKTLPDLARVASDGVLIFAG-YPGQQRAKVAEL 115 (171)
Q Consensus 71 vSDaLd-------yLsprylNkTlPeLaRvs~dgiVif~g-~pgq~~ak~~el 115 (171)
+ |+.| ..+.+++... -.+++.|||++.-+ .|..+..-+..+
T Consensus 156 ~-D~~dp~~~~~~l~t~ef~~~~---~~~L~~~Gv~v~~~~~~~~~~~~~~~i 204 (246)
T PF01564_consen 156 V-DLTDPDGPAPNLFTREFYQLC---KRRLKPDGVLVLQAGSPFLHPELFKSI 204 (246)
T ss_dssp E-ESSSTTSCGGGGSSHHHHHHH---HHHEEEEEEEEEEEEETTTTHHHHHHH
T ss_pred E-eCCCCCCCcccccCHHHHHHH---HhhcCCCcEEEEEccCcccchHHHHHH
Confidence 6 6665 2233333221 13678899988644 454444444443
No 133
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=83.33 E-value=2 Score=38.40 Aligned_cols=100 Identities=16% Similarity=0.219 Sum_probs=53.6
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHH-HHhHhcc------eeeeeecCCCC-C--CCCcccEEEE
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCK-SLVHKGI------VRVADIKFPLP-Y--RAKSFPLVIV 71 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~Ck-sLv~kG~------VRvadikfpLP-Y--R~KSFslViv 71 (171)
++||++|.+||++--..+..+..+..+||.++-- + ..++ .+-..|+ +..+|+.-.|+ + +..+||+||
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~a-l-~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi- 298 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEA-L-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV- 298 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHH-H-HHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE-
Confidence 4799999999996433344556688999876432 1 1222 2222343 34578733332 2 245899998
Q ss_pred cccccccChh-hh---hchhhhh-----hhhccCceEEEecC
Q 030814 72 SDALDYLSPK-YL---NKTLPDL-----ARVASDGVLIFAGY 104 (171)
Q Consensus 72 SDaLdyLspr-yl---NkTlPeL-----aRvs~dgiVif~g~ 104 (171)
.|-=-+...+ .+ .+.+.+| -.+...|+++..+.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4432222111 01 1123332 34567888887553
No 134
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=82.91 E-value=2.7 Score=34.64 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=38.5
Q ss_pred cceeecCCchhHhHhhhhc--ccccccccccccc--cchhHHHHHHhHhcc----eeeeeecCCCCCCCCcccEEEE
Q 030814 3 KVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDI--EDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIV 71 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~--~d~d~~CksLv~kG~----VRvadikfpLPYR~KSFslViv 71 (171)
+|||+|-++++.-..|.+. ......++|.+.- +.+..+++ +.|+ +..+|.. .+|....+||.||+
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~---~~g~~~v~~~~~D~~-~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN---RCGVLNVAVTNFDGR-VFGAAVPKFDAILL 146 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH---HcCCCcEEEecCCHH-HhhhhccCCCEEEE
Confidence 6999999888866544332 2347888887653 33344443 3453 3445652 23434557999886
No 135
>PRK01581 speE spermidine synthase; Validated
Probab=82.71 E-value=3.1 Score=37.99 Aligned_cols=95 Identities=22% Similarity=0.289 Sum_probs=52.2
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHh---------c-----c--eeeeeecCCCCCCCCc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK---------G-----I--VRVADIKFPLPYRAKS 65 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~k---------G-----~--VRvadikfpLPYR~KS 65 (171)
++||.+|-|++++++.+|+.. +++--++.|.|..--.+.++ | . +.++|..--|+-...+
T Consensus 152 krVLIIGgGdG~tlrelLk~~-----~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 152 KRVLILGGGDGLALREVLKYE-----TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CEEEEECCCHHHHHHHHHhcC-----CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 589999999999999999743 23333333333332222221 1 2 3457764435555678
Q ss_pred ccEEEEcccccccCh----hhhhchhhh-hhhhccCceEEEe
Q 030814 66 FPLVIVSDALDYLSP----KYLNKTLPD-LARVASDGVLIFA 102 (171)
Q Consensus 66 FslVivSDaLdyLsp----rylNkTlPe-LaRvs~dgiVif~ 102 (171)
||+||+ |+-|-..+ -|--.-+-. ..++..+|+++..
T Consensus 227 YDVIIv-Dl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 227 YDVIII-DFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ccEEEE-cCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999885 55443221 111111112 2357888986554
No 136
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=82.22 E-value=5 Score=35.37 Aligned_cols=96 Identities=23% Similarity=0.249 Sum_probs=63.2
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccc-cCh
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY-LSP 80 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdy-Lsp 80 (171)
+++||+|-|.+.|-.+|-.-=+. -|--|---.-++.|-+||+ +|-|+ ....=...+||+|..-+.||- -.|
T Consensus 96 ~~lLDlGAGdG~VT~~l~~~f~~------v~aTE~S~~Mr~rL~~kg~-~vl~~-~~w~~~~~~fDvIscLNvLDRc~~P 167 (265)
T PF05219_consen 96 KSLLDLGAGDGEVTERLAPLFKE------VYATEASPPMRWRLSKKGF-TVLDI-DDWQQTDFKFDVISCLNVLDRCDRP 167 (265)
T ss_pred CceEEecCCCcHHHHHHHhhcce------EEeecCCHHHHHHHHhCCC-eEEeh-hhhhccCCceEEEeehhhhhccCCH
Confidence 47999999999998888532221 2222222345788999998 44444 223334568999999999995 467
Q ss_pred hhhhchhhhhhhhccCceEEEec-CCCc
Q 030814 81 KYLNKTLPDLARVASDGVLIFAG-YPGQ 107 (171)
Q Consensus 81 rylNkTlPeLaRvs~dgiVif~g-~pgq 107 (171)
.-|=+.+-. .+..+|++|.+= +|=.
T Consensus 168 ~~LL~~i~~--~l~p~G~lilAvVlP~~ 193 (265)
T PF05219_consen 168 LTLLRDIRR--ALKPNGRLILAVVLPFR 193 (265)
T ss_pred HHHHHHHHH--HhCCCCEEEEEEEeccc
Confidence 776665555 445588777654 5543
No 137
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=80.55 E-value=0.93 Score=40.41 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=49.7
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHH---HHhHhcc----ee--eeeecCCCCCCCCcccEEEEc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCK---SLVHKGI----VR--VADIKFPLPYRAKSFPLVIVS 72 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~Ck---sLv~kG~----VR--vadikfpLPYR~KSFslVivS 72 (171)
++|||||=|++-+=-.|- -.+...=||++.+.-=.-++|+ +=+..|- ++ ..|.+=. ...||.|++|
T Consensus 91 ~~ilDvGCGgGLLSepLA-rlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----~~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLA-RLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----TGKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhH-hhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----ccccceeeeH
Confidence 469999999876665665 5568889999987543344444 2233331 11 1111111 1229999999
Q ss_pred cccccc--Chhhhhc
Q 030814 73 DALDYL--SPKYLNK 85 (171)
Q Consensus 73 DaLdyL--sprylNk 85 (171)
++|+|. .+..||.
T Consensus 166 evleHV~dp~~~l~~ 180 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNC 180 (282)
T ss_pred HHHHHHhCHHHHHHH
Confidence 999998 6666665
No 138
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=80.16 E-value=3.4 Score=34.92 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=58.0
Q ss_pred ccceeecCCchhHhHhhhh--cccccccccccccccchhHHHHHHh-Hhcc---e--eeeeecCCCCC------CCCccc
Q 030814 2 HKVLHVGPDTCSVVSTLLK--EEETEAWGVEPYDIEDADARCKSLV-HKGI---V--RVADIKFPLPY------RAKSFP 67 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llk--ee~teAWGVEPyd~~d~d~~CksLv-~kG~---V--RvadikfpLPY------R~KSFs 67 (171)
++||.+|+.+++---.|.. .+++.-+.+|..+ + .-..++..+ +.|+ | +++|-.--||- ...+||
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~-~-~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINR-E-NYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCH-H-HHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 5799999988864333322 2466788888854 2 233444444 4553 2 23333222332 136899
Q ss_pred EEEEcccccccChhhhhchhhhhhhhccCceEEEe
Q 030814 68 LVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFA 102 (171)
Q Consensus 68 lVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~ 102 (171)
+|+. |+=.-.-+.|++..+| .+...|+||+=
T Consensus 159 ~iFi-DadK~~Y~~y~~~~l~---ll~~GGviv~D 189 (247)
T PLN02589 159 FIFV-DADKDNYINYHKRLID---LVKVGGVIGYD 189 (247)
T ss_pred EEEe-cCCHHHhHHHHHHHHH---hcCCCeEEEEc
Confidence 9987 5556666888988876 56678888764
No 139
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=80.06 E-value=5.2 Score=32.94 Aligned_cols=96 Identities=17% Similarity=0.297 Sum_probs=55.1
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccc-hhHHHHHHhHh-cc---eeeeeecCCCCCCCCcccEEEEccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED-ADARCKSLVHK-GI---VRVADIKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d-~d~~CksLv~k-G~---VRvadikfpLPYR~KSFslVivSDaLd 76 (171)
-++|++|=|++-----|- +.+-+ |.-.|+.+ +=...+.+.++ |+ .+++||.- ..+ +..||+|+++-++.
T Consensus 32 g~~LDlgcG~GRNalyLA-~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~-~~~-~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLA-SQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADLND-FDF-PEEYDFIVSTVVFM 105 (192)
T ss_dssp SEEEEES-TTSHHHHHHH-HTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC-BS--TTTEEEEEEESSGG
T ss_pred CcEEEcCCCCcHHHHHHH-HCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecchh-ccc-cCCcCEEEEEEEec
Confidence 378999988886544444 44333 33333333 22234555443 33 36778832 233 36799999889999
Q ss_pred ccChhhhhchhhhhhh-hccCceEEEec
Q 030814 77 YLSPKYLNKTLPDLAR-VASDGVLIFAG 103 (171)
Q Consensus 77 yLsprylNkTlPeLaR-vs~dgiVif~g 103 (171)
||.|+...+.+-.+.. +...|+.++..
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 9999988777776644 44556766533
No 140
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=79.56 E-value=8.9 Score=34.45 Aligned_cols=99 Identities=11% Similarity=0.134 Sum_probs=56.1
Q ss_pred cceeecCCchhHhHhhhhcc-ccccccccccccc--chhHHHHHHhHhc----ceeeeeecCCCCCCCCcccEEEEc---
Q 030814 3 KVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIE--DADARCKSLVHKG----IVRVADIKFPLPYRAKSFPLVIVS--- 72 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee-~teAWGVEPyd~~--d~d~~CksLv~kG----~VRvadikfpLPYR~KSFslVivS--- 72 (171)
+|||+|-||+.+--.|.+.. +.+..|||.+.+- -+..|.+...-.+ -+.+.|.--.+ ...+||+|+.-
T Consensus 231 ~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~--~~~~fDlIlsNPPf 308 (378)
T PRK15001 231 EIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV--EPFRFNAVLCNPPF 308 (378)
T ss_pred eEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC--CCCCEEEEEECcCc
Confidence 69999999976655555443 5688999988532 1222332221111 22345552222 34689999883
Q ss_pred ccccccChhhhhchhhhhhhh-ccCceEEEec
Q 030814 73 DALDYLSPKYLNKTLPDLARV-ASDGVLIFAG 103 (171)
Q Consensus 73 DaLdyLsprylNkTlPeLaRv-s~dgiVif~g 103 (171)
....+++..-..+.+-+..|+ ...|.+++.+
T Consensus 309 h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 309 HQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 222334444444555555544 6678887776
No 141
>PLN02476 O-methyltransferase
Probab=76.30 E-value=3.9 Score=35.46 Aligned_cols=96 Identities=19% Similarity=0.177 Sum_probs=55.9
Q ss_pred ccceeecCCchhHhHhhhh--cccccccccccccccchhHHHHHHh-Hhcc-----eeeeeecCCCCC-----CCCcccE
Q 030814 2 HKVLHVGPDTCSVVSTLLK--EEETEAWGVEPYDIEDADARCKSLV-HKGI-----VRVADIKFPLPY-----RAKSFPL 68 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llk--ee~teAWGVEPyd~~d~d~~CksLv-~kG~-----VRvadikfpLPY-----R~KSFsl 68 (171)
++||.+|+++.+.--.|.+ .+++....+|..+ + .-..++..+ +.|+ ++++|..--||= ...+||+
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~-e-~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERDS-N-SLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH-H-HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 5799999999876555543 1344567777665 1 223443333 3343 233444222331 2368999
Q ss_pred EEEcccccccChhhhhchhhhhhhhccCceEEEec
Q 030814 69 VIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 69 VivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g 103 (171)
||+ |+=.---+.|++..+| .+...|++|+-.
T Consensus 198 VFI-Da~K~~Y~~y~e~~l~---lL~~GGvIV~DN 228 (278)
T PLN02476 198 AFV-DADKRMYQDYFELLLQ---LVRVGGVIVMDN 228 (278)
T ss_pred EEE-CCCHHHHHHHHHHHHH---hcCCCcEEEEec
Confidence 886 5544444667777765 456788888754
No 142
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=75.33 E-value=4.4 Score=35.33 Aligned_cols=93 Identities=23% Similarity=0.298 Sum_probs=53.4
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccc--cchhHHHHHHhHhcce----eeeeecCCCCCCCCcccEEEEcccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDI--EDADARCKSLVHKGIV----RVADIKFPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~--~d~d~~CksLv~kG~V----RvadikfpLPYR~KSFslVivSDaL 75 (171)
.+|||||=|-+.+-..|- ..+-+.-|++..+- +-+..+. + .+-| |.+.+ ..|--...+||+|+.-++|
T Consensus 61 ~~vLDvGCGgG~Lse~mA-r~Ga~VtgiD~se~~I~~Ak~ha--~--e~gv~i~y~~~~~-edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 61 LRVLDVGCGGGILSEPLA-RLGASVTGIDASEKPIEVAKLHA--L--ESGVNIDYRQATV-EDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CeEEEecCCccHhhHHHH-HCCCeeEEecCChHHHHHHHHhh--h--hccccccchhhhH-HHHHhcCCCccEEEEhhHH
Confidence 379999999886666665 55688888876542 2121111 1 1111 12222 2233333799999999999
Q ss_pred cccC-hhhhhchhhhhhhhcc-CceEEEec
Q 030814 76 DYLS-PKYLNKTLPDLARVAS-DGVLIFAG 103 (171)
Q Consensus 76 dyLs-prylNkTlPeLaRvs~-dgiVif~g 103 (171)
+|+. |+. .+-++++.-+ +|+++++-
T Consensus 135 EHv~dp~~---~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 135 EHVPDPES---FLRACAKLVKPGGILFLST 161 (243)
T ss_pred HccCCHHH---HHHHHHHHcCCCcEEEEec
Confidence 9996 444 3334554444 45554443
No 143
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=75.15 E-value=3.1 Score=37.60 Aligned_cols=77 Identities=25% Similarity=0.336 Sum_probs=56.3
Q ss_pred ccEEEEcccccccChhh-hhchhhhhhh-hccCceEEEecCCCcchhh--hhhh--hhcCCCccccchhH--HHHHHHHh
Q 030814 66 FPLVIVSDALDYLSPKY-LNKTLPDLAR-VASDGVLIFAGYPGQQRAK--VAEL--SKFGRPAKMRSSSW--WIRYFVQT 137 (171)
Q Consensus 66 FslVivSDaLdyLspry-lNkTlPeLaR-vs~dgiVif~g~pgq~~ak--~~el--skfgr~ak~RsssW--W~r~F~q~ 137 (171)
-+|+|||-..|+.+-.- ++.+|--|++ +..+|.+|+||+|=...-+ ..-| -+-|.|=-||-+|= =.+.|+.+
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAA 289 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHc
Confidence 48999999999999955 7888999999 8999999999988543222 2223 24677877877763 23566677
Q ss_pred ccccc
Q 030814 138 SLEEN 142 (171)
Q Consensus 138 ~leeN 142 (171)
|++..
T Consensus 290 GF~K~ 294 (311)
T PF12147_consen 290 GFEKI 294 (311)
T ss_pred CCchh
Confidence 76643
No 144
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=74.89 E-value=24 Score=27.86 Aligned_cols=121 Identities=20% Similarity=0.258 Sum_probs=75.0
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcceee--eeecCCCCCCCCcccEEEEcccccccC
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRV--ADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRv--adikfpLPYR~KSFslVivSDaLdyLs 79 (171)
++|||||=|+......+++.-.. .=+--+|+..+-..++. ...|+. +|+--|+|- +|+|+.+.+|...+
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~--l~~~v~Dlp~v~~~~~~---~~rv~~~~gd~f~~~P~----~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPN--LRATVFDLPEVIEQAKE---ADRVEFVPGDFFDPLPV----ADVYLLRHVLHDWS 172 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTT--SEEEEEE-HHHHCCHHH---TTTEEEEES-TTTCCSS----ESEEEEESSGGGS-
T ss_pred cEEEeccCcchHHHHHHHHHCCC--CcceeeccHhhhhcccc---ccccccccccHHhhhcc----ccceeeehhhhhcc
Confidence 57999999999999998855432 23455666665555555 666665 455335554 99999999999999
Q ss_pred hhhhhchhhhhhhhccC---ceEEEec--CCCcchhhhhh----------hhhcCCCccccchhHHHHH
Q 030814 80 PKYLNKTLPDLARVASD---GVLIFAG--YPGQQRAKVAE----------LSKFGRPAKMRSSSWWIRY 133 (171)
Q Consensus 80 prylNkTlPeLaRvs~d---giVif~g--~pgq~~ak~~e----------lskfgr~ak~RsssWW~r~ 133 (171)
++..=+-|-..++.-.. |.||..- .|-+....... +.-+| .|-|+.+=|.+.
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~--G~~rt~~e~~~l 239 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG--GKERTEEEWEAL 239 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS--SS-EEHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC--CCCcCHHHHHHH
Confidence 99987777777776653 4555444 33333322222 33444 666766666554
No 145
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=73.95 E-value=5.7 Score=34.98 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=34.8
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccc-hhHHHHHHhHhc-----ceee---e---eecCCCCCCCCcccEEE
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED-ADARCKSLVHKG-----IVRV---A---DIKFPLPYRAKSFPLVI 70 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d-~d~~CksLv~kG-----~VRv---a---dikfpLPYR~KSFslVi 70 (171)
++||||.|++.|..-|..... .|-+---||+. +-..|+.-++.- .|++ . +|-.++-.....||+|+
T Consensus 117 ~vLDIGtGag~I~~lLa~~~~--~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 117 RVLDIGVGANCIYPLIGVHEY--GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred eEEEecCCccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 689999999887777654321 24333334432 333344434332 2333 1 22112222356899887
Q ss_pred E
Q 030814 71 V 71 (171)
Q Consensus 71 v 71 (171)
.
T Consensus 195 c 195 (321)
T PRK11727 195 C 195 (321)
T ss_pred e
Confidence 5
No 146
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=73.49 E-value=6.9 Score=34.53 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=41.7
Q ss_pred ccceeecCCchhHhHhhhhc--ccccccccccccc--cchhHHHHHHhHhcc----eeeeeecCCCCCCCCcccEEEE
Q 030814 2 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDI--EDADARCKSLVHKGI----VRVADIKFPLPYRAKSFPLVIV 71 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llke--e~teAWGVEPyd~--~d~d~~CksLv~kG~----VRvadikfpLPYR~KSFslViv 71 (171)
.+||++|-|+++.-..+.+. ......|||..+- +.+..|++ +.|+ +..+|....++.=..+||+||+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~---~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 326 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAK---RLGLTNIETKALDARKVHEKFAEKFDKILV 326 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEeCCcccccchhcccCCEEEE
Confidence 46999999999887777654 3568888887642 22344443 3343 4457764322211278999984
No 147
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=70.07 E-value=11 Score=31.23 Aligned_cols=66 Identities=24% Similarity=0.540 Sum_probs=41.0
Q ss_pred HHHHHHhHhcceeeeeecCCCCCCCCcc--cEEEEcccccccChhhhhchhhhhhhhccCceEEEecCCCcchhh
Q 030814 39 ARCKSLVHKGIVRVADIKFPLPYRAKSF--PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAK 111 (171)
Q Consensus 39 ~~CksLv~kG~VRvadikfpLPYR~KSF--slVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak 111 (171)
..-..|+.+|.|++.++.| .|-.+| ++||+-+ -.-++|.++-.. |-|+..+.=+|++|-|.|+-.+
T Consensus 94 ~~~~~~~~~~~Ie~~~~~~---iRGrt~~~~~iIvDE-aQN~t~~~~k~i---lTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 94 EKLEELIQNGKIEIEPLAF---IRGRTFDNAFIIVDE-AQNLTPEELKMI---LTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp TCHHHHHHTTSEEEEEGGG---GTT--B-SEEEEE-S-GGG--HHHHHHH---HTTB-TT-EEEEEE--------
T ss_pred HhHHHHhhcCeEEEEehhh---hcCccccceEEEEec-ccCCCHHHHHHH---HcccCCCcEEEEecCceeecCC
Confidence 3456788999999999877 588888 6666654 467889888665 7899999999999999998555
No 148
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=68.83 E-value=11 Score=33.48 Aligned_cols=65 Identities=14% Similarity=0.283 Sum_probs=41.1
Q ss_pred cceeecCCchhHhHhhhhc--cccccccccccc--ccchhHHHHHHhHhcc--e--eeeeecCCCC----CCCCcccEEE
Q 030814 3 KVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGI--V--RVADIKFPLP----YRAKSFPLVI 70 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke--e~teAWGVEPyd--~~d~d~~CksLv~kG~--V--RvadikfpLP----YR~KSFslVi 70 (171)
+||++|-|+++.-..|.+. ...+..++|.++ ++.+..+++ +.|+ | ..+|.. .+| +...+||.|+
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~---r~g~~~v~~~~~D~~-~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQ---RLGLKSIKILAADSR-NLLELKPQWRGYFDRIL 330 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHH---HcCCCeEEEEeCChh-hcccccccccccCCEEE
Confidence 6999999998877666543 234677777654 344555554 3453 3 345663 233 5567899999
Q ss_pred E
Q 030814 71 V 71 (171)
Q Consensus 71 v 71 (171)
+
T Consensus 331 ~ 331 (434)
T PRK14901 331 L 331 (434)
T ss_pred E
Confidence 6
No 149
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=67.28 E-value=11 Score=33.63 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=56.6
Q ss_pred cceeecCCchhHhHhhhhccc-cccccccccc--ccchhHHHHHHhHhcc-eeeeeecCCCCCCCCcccEEEEccccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEE-TEAWGVEPYD--IEDADARCKSLVHKGI-VRVADIKFPLPYRAKSFPLVIVSDALDYL 78 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~-teAWGVEPyd--~~d~d~~CksLv~kG~-VRvadikfpLPYR~KSFslVivSDaLdyL 78 (171)
+|||.+-|++..--.+.++.+ .+.|++|-.. ++.+..|.+..--... +..+|...-|+- .++||+|++ |- |=
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~l-DP--~G 135 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDI-DP--FG 135 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEE-CC--CC
Confidence 699999999888777766644 4788887543 3444444433211112 677887554533 567999887 64 22
Q ss_pred C-hhhhhchhhhhhhhccCceEEEe
Q 030814 79 S-PKYLNKTLPDLARVASDGVLIFA 102 (171)
Q Consensus 79 s-prylNkTlPeLaRvs~dgiVif~ 102 (171)
+ ..+|+.. +..+..+|+|.+|
T Consensus 136 s~~~~l~~a---l~~~~~~gilyvS 157 (382)
T PRK04338 136 SPAPFLDSA---IRSVKRGGLLCVT 157 (382)
T ss_pred CcHHHHHHH---HHHhcCCCEEEEE
Confidence 2 2444433 4455667887776
No 150
>PRK04148 hypothetical protein; Provisional
Probab=67.24 E-value=9.5 Score=30.13 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=57.2
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcc-eeeeeecCCCCCCCCcccEEEEcccccccChh
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPLPYRAKSFPLVIVSDALDYLSPK 81 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~-VRvadikfpLPYR~KSFslVivSDaLdyLspr 81 (171)
++|.||-|++.-|+..|.+.+.+.-||+-.+- + +....+.|. +.++|+--|=+=--+.+|+|.+. -.|+
T Consensus 19 kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~--a---V~~a~~~~~~~v~dDlf~p~~~~y~~a~liysi-----rpp~ 88 (134)
T PRK04148 19 KIVELGIGFYFKVAKKLKESGFDVIVIDINEK--A---VEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSI-----RPPR 88 (134)
T ss_pred EEEEEEecCCHHHHHHHHHCCCEEEEEECCHH--H---HHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEe-----CCCH
Confidence 59999999876577777788888888765432 2 333333444 88899955555456788888765 4677
Q ss_pred hhhchhhhhhh-hccCc
Q 030814 82 YLNKTLPDLAR-VASDG 97 (171)
Q Consensus 82 ylNkTlPeLaR-vs~dg 97 (171)
-|-.-+=+||+ |.+|-
T Consensus 89 el~~~~~~la~~~~~~~ 105 (134)
T PRK04148 89 DLQPFILELAKKINVPL 105 (134)
T ss_pred HHHHHHHHHHHHcCCCE
Confidence 77777777775 33443
No 151
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=66.76 E-value=3.1 Score=29.92 Aligned_cols=15 Identities=27% Similarity=0.773 Sum_probs=12.4
Q ss_pred ccchhHHHHHHHHhc
Q 030814 124 MRSSSWWIRYFVQTS 138 (171)
Q Consensus 124 ~RsssWW~r~F~q~~ 138 (171)
+-+..||..||+|++
T Consensus 45 ~~~~~fwk~fFe~sA 59 (66)
T PF08655_consen 45 WDSAKFWKQFFEQSA 59 (66)
T ss_pred HHHHhHHHHHHHhhh
Confidence 446789999999975
No 152
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=65.93 E-value=3.6 Score=37.37 Aligned_cols=155 Identities=26% Similarity=0.321 Sum_probs=91.3
Q ss_pred ccceeecCCchhHhHhhhhcccccccccc--cccccchhHHHHHHhHhcc--eeeee-ecCCCCCCCCcccEEEEccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVE--PYDIEDADARCKSLVHKGI--VRVAD-IKFPLPYRAKSFPLVIVSDALD 76 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVE--Pyd~~d~d~~CksLv~kG~--VRvad-ikfpLPYR~KSFslVivSDaLd 76 (171)
+.||.|||||++.--+|| |-+...--+| |-=+..+.+.-+..=..|- |-++| +|.+||| ||.||. +.==
T Consensus 60 D~VLEvGPGTGnLT~~lL-e~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~----fd~cVs-NlPy 133 (315)
T KOG0820|consen 60 DVVLEVGPGTGNLTVKLL-EAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR----FDGCVS-NLPY 133 (315)
T ss_pred CEEEEeCCCCCHHHHHHH-HhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc----cceeec-cCCc
Confidence 469999999999999999 6666655544 3333334443333332233 33455 6888887 666653 3333
Q ss_pred ccChhhhhchhh----------hhhhhccCceEEEecCCC--------cchhhhhhhhhcCC-----Cccccch------
Q 030814 77 YLSPKYLNKTLP----------DLARVASDGVLIFAGYPG--------QQRAKVAELSKFGR-----PAKMRSS------ 127 (171)
Q Consensus 77 yLsprylNkTlP----------eLaRvs~dgiVif~g~pg--------q~~ak~~elskfgr-----~ak~Rss------ 127 (171)
-+|...+=|-|+ -+-|..+.-+|.--|-+- |--|++..+-|+|| |-|.-|+
T Consensus 134 qISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrlsin~q~~a~v~~i~KVgknnFrPpPkVessvVriep 213 (315)
T KOG0820|consen 134 QISSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLSINVQLLARVTHIMKVGKNNFRPPPKVESSVVRIEP 213 (315)
T ss_pred cccCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceeehhhHHhhcchhheeecccccCCCCccccceeEeec
Confidence 344444444332 134555555543333332 44467788899999 4444333
Q ss_pred ---------hHHHHHHHHhccccchHHHHHHHHHHhh----ccCCCCc
Q 030814 128 ---------SWWIRYFVQTSLEENEPAVKKFEQAASK----KSYKPNC 162 (171)
Q Consensus 128 ---------sWW~r~F~q~~leeNea~~kkfeqa~~k----~sy~p~c 162 (171)
+=|..+--+.=++-|.+..-.|.+.+.- +.|++-|
T Consensus 214 k~P~pp~~~~ewdg~lri~F~rkNktl~a~fk~~~v~~~ie~n~~~~~ 261 (315)
T KOG0820|consen 214 KNPRPPVDFHEWDGLLRICFLRKNKTLMAPFKSSSVLQKIEKNYKKRE 261 (315)
T ss_pred CCCCCccchHHHHHHHHHHHHHHhHHhhcchhhhHHHHHhhhcccccc
Confidence 4577777777788888888888766532 3455544
No 153
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=64.08 E-value=12 Score=32.28 Aligned_cols=96 Identities=36% Similarity=0.450 Sum_probs=54.3
Q ss_pred cceeecCCchhHhHhhhh-ccccccccccccc-ccc----hhHHHHHHhHhc-ceeee--------eecCCCCCCCCccc
Q 030814 3 KVLHVGPDTCSVVSTLLK-EEETEAWGVEPYD-IED----ADARCKSLVHKG-IVRVA--------DIKFPLPYRAKSFP 67 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llk-ee~teAWGVEPyd-~~d----~d~~CksLv~kG-~VRva--------dikfpLPYR~KSFs 67 (171)
+||..|-||. +|..+-- ....+.+==.+-+ +++ .+.+-.+|-.-| -|-|+ |.++-+|-+ ||
T Consensus 89 ~vlELGsGtg-lvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~---~D 164 (248)
T KOG2793|consen 89 NVLELGSGTG-LVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP---FD 164 (248)
T ss_pred eEEEecCCcc-HHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc---cc
Confidence 6899998876 5444332 2334433222222 222 222223344423 34443 334555555 99
Q ss_pred EEEEcccc-cccChhhhhchhhhhhhhccCceEEEecCC
Q 030814 68 LVIVSDAL-DYLSPKYLNKTLPDLARVASDGVLIFAGYP 105 (171)
Q Consensus 68 lVivSDaL-dyLsprylNkTlPeLaRvs~dgiVif~g~p 105 (171)
++|+||.. +==++..|-+||-.| +.+++ +||..+|
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~l--l~~~~-~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFL--LAKDG-TIFLAYP 200 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHH--HhcCC-eEEEEEe
Confidence 99999975 334678888998777 45666 7777765
No 154
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=63.53 E-value=7.2 Score=33.67 Aligned_cols=69 Identities=26% Similarity=0.253 Sum_probs=46.3
Q ss_pred ccceeecCCchhHhHhhhhcc--ccccccccccccc--chhHHHHH--HhHhcceeeeeecCCCCCCCCc-ccEEEE
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYDIE--DADARCKS--LVHKGIVRVADIKFPLPYRAKS-FPLVIV 71 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee--~teAWGVEPyd~~--d~d~~Cks--Lv~kG~VRvadikfpLPYR~KS-FslViv 71 (171)
.+|||+|.|++ +++-||..+ +-+.-|||--+.- -|.+|=+- |-.+--|-.+||+--.+.+..+ ||+||+
T Consensus 46 ~~IlDlGaG~G-~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 46 GRILDLGAGNG-ALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred CeEEEecCCcC-HHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 47999999965 566666554 2566787754422 24444443 4555567778998877777776 999986
No 155
>PF05157 T2SE_Nter: Type II secretion system (T2SS), protein E, N-terminal domain; InterPro: IPR007831 This domain is found at the N terminus of members of the general secretory system II protein E. Proteins in this subfamily are typically involved in Type IV pilus biogenesis (e.g. Q9X4G8 from SWISSPROT), though some are involved in other processes; for instance aggregation in Myxococcus xanthus (e.g. Q9RF11 from SWISSPROT) [].; GO: 0005524 ATP binding, 0006810 transport; PDB: 2D27_A 2D28_C.
Probab=62.86 E-value=2.2 Score=28.95 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=33.2
Q ss_pred CCCCCCCCcccEEEEcccccccChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhh-cCC-Ccc
Q 030814 57 FPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSK-FGR-PAK 123 (171)
Q Consensus 57 fpLPYR~KSFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elsk-fgr-~ak 123 (171)
+.+|| -.--.+.+-.+.++.++.+++++..==-.+.+.+.++|.+..|-.. ....+|.. +|+ +++
T Consensus 20 ~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lPl~~~~~~l~va~~dP~~~-~~~~~l~~~~~~~~i~ 86 (109)
T PF05157_consen 20 LGLPF-VDLDELPVDPELLDRLPLEFARRNRVLPLRQDDGTLVVAVADPLDP-EALDELEFLLGKYPIE 86 (109)
T ss_dssp HT--B---GGGS-SS-----G--HHHHHHHTEEEEEECTTCEEEEES-TT-H-HHHHHHHHHH-S--EE
T ss_pred hCCCe-echhhcCCCHHHHHhhHHHHHHHcCEEEEEEECCEEEEEEcCCCCH-HHHHHHHHHcCCCCeE
Confidence 66676 3334455666778889999986654333677888999999999774 55666644 366 555
No 156
>PRK00536 speE spermidine synthase; Provisional
Probab=62.04 E-value=45 Score=28.71 Aligned_cols=99 Identities=20% Similarity=0.154 Sum_probs=55.3
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccc-hhHHHHHHhH-------hcceeeeeecCCCCC-CCCcccEEEEc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED-ADARCKSLVH-------KGIVRVADIKFPLPY-RAKSFPLVIVS 72 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d-~d~~CksLv~-------kG~VRvadikfpLPY-R~KSFslVivS 72 (171)
++||=+|-|.|++++-+||-.+ + |.-=||+. +=.-||.-.- --.|++- .+ +.- ..++||+|| .
T Consensus 74 k~VLIiGGGDGg~~REvLkh~~-~---v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~--~~-~~~~~~~~fDVII-v 145 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFKYDT-H---VDFVQADEKILDSFISFFPHFHEVKNNKNFTHA--KQ-LLDLDIKKYDLII-C 145 (262)
T ss_pred CeEEEEcCCchHHHHHHHCcCC-e---eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEe--eh-hhhccCCcCCEEE-E
Confidence 6899999999999999999863 3 33333433 3445655221 1223322 11 111 237899988 5
Q ss_pred ccccccChhhhhchhhhhhhhccCceEEE-ecCCCcchhhhh
Q 030814 73 DALDYLSPKYLNKTLPDLARVASDGVLIF-AGYPGQQRAKVA 113 (171)
Q Consensus 73 DaLdyLsprylNkTlPeLaRvs~dgiVif-~g~pgq~~ak~~ 113 (171)
|.+ -+|.+... + -.+++.+||++. +|-|.-++.-..
T Consensus 146 Ds~--~~~~fy~~-~--~~~L~~~Gi~v~Qs~sp~~~~~~~~ 182 (262)
T PRK00536 146 LQE--PDIHKIDG-L--KRMLKEDGVFISVAKHPLLEHVSMQ 182 (262)
T ss_pred cCC--CChHHHHH-H--HHhcCCCcEEEECCCCcccCHHHHH
Confidence 644 23333311 1 234677888776 456765544333
No 157
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=60.32 E-value=17 Score=31.35 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=43.2
Q ss_pred ecCCCCCCCCcccEEEEcccccccChhhhhchhhhhhhhccCceEEEecC
Q 030814 55 IKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGY 104 (171)
Q Consensus 55 ikfpLPYR~KSFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~ 104 (171)
+-.+-| ..+-||+|+.=|+|=|++...=.+.+..++..-++|=++|+|.
T Consensus 193 Ll~~~~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 193 LLDDSP-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred CCCCcc-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 333444 7888999999999999999999999999999999999999994
No 158
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=59.75 E-value=10 Score=32.84 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=38.0
Q ss_pred CCcccEEEEcccccccChhhhhchhhhhhhhccCceEEEecC
Q 030814 63 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGY 104 (171)
Q Consensus 63 ~KSFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~ 104 (171)
...||+|+.-++|=|+++..-.+.+..|++.-+.|=+++.|.
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 578999999999999999999999999999877777888885
No 159
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=56.47 E-value=24 Score=29.01 Aligned_cols=121 Identities=23% Similarity=0.244 Sum_probs=63.2
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccChhh
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKY 82 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLspry 82 (171)
.||.+|||++.+-..|++.. .....||... .-|+.|-++-. ....| -||-.|++++=.+..
T Consensus 33 ~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~-----~~~~~L~~~~~------------~~~~~-~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 33 TVLEIGPGPGALTRELLKRG-KRVIAVEIDP-----DLAKHLKERFA------------SNPNV-EVINGDFLKWDLYDL 93 (262)
T ss_dssp EEEEESSTTSCCHHHHHHHS-SEEEEEESSH-----HHHHHHHHHCT------------TCSSE-EEEES-TTTSCGGGH
T ss_pred EEEEeCCCCccchhhHhccc-CcceeecCcH-----hHHHHHHHHhh------------hcccc-eeeecchhccccHHh
Confidence 69999999999999998555 7778877652 33444444211 11222 234566666555544
Q ss_pred hhchhhhhhhhccCceEEEecCCCcch----hhhhhhhhcCC--CccccchhHHHHHHHHhccccchHHHHHHHHHH
Q 030814 83 LNKTLPDLARVASDGVLIFAGYPGQQR----AKVAELSKFGR--PAKMRSSSWWIRYFVQTSLEENEPAVKKFEQAA 153 (171)
Q Consensus 83 lNkTlPeLaRvs~dgiVif~g~pgq~~----ak~~elskfgr--~ak~RsssWW~r~F~q~~leeNea~~kkfeqa~ 153 (171)
+ ..+-+.|+...|-+-- .++-++.++|+ -.=|=...++.|...+-|- .+....--+-|+.
T Consensus 94 ~----------~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a~pg~-~~~~~lsv~~q~~ 159 (262)
T PF00398_consen 94 L----------KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLAKPGS-KRYSRLSVLAQAF 159 (262)
T ss_dssp C----------SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHTSTTS-TTCSHHHHHHHHH
T ss_pred h----------cCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccCCCCC-Cccchhhhhhhhh
Confidence 4 2333344444553221 22333445543 2334556667776665553 3333333444443
No 160
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=55.74 E-value=11 Score=33.57 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=59.6
Q ss_pred cceeecCCchhHhHhhhhc--cccccccccccc--ccchhHHHHHHhHh-cceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHK-GIVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llke--e~teAWGVEPyd--~~d~d~~CksLv~k-G~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
+||+..-||+..-=..++| +-.++|++|-.. ++.+..|.+..--. =.|...|...-|....+.||+|+. |- |
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl-DP--f 123 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI-DP--F 123 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe-CC--C
Confidence 5899988888888888877 347888887543 33344555433111 124445665556655678998877 77 5
Q ss_pred cCh-hhhhchhhhhhhhccCceEEEe
Q 030814 78 LSP-KYLNKTLPDLARVASDGVLIFA 102 (171)
Q Consensus 78 Lsp-rylNkTlPeLaRvs~dgiVif~ 102 (171)
=+| .+|+..+. .+..+|++.+|
T Consensus 124 Gs~~~fld~al~---~~~~~glL~vT 146 (374)
T TIGR00308 124 GTPAPFVDSAIQ---ASAERGLLLVT 146 (374)
T ss_pred CCcHHHHHHHHH---hcccCCEEEEE
Confidence 454 66665543 34567788888
No 161
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=55.69 E-value=11 Score=29.36 Aligned_cols=39 Identities=26% Similarity=0.540 Sum_probs=32.3
Q ss_pred CcccEEEEcccccccChhhhhchhhhhhhhccCceEEEecCC
Q 030814 64 KSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYP 105 (171)
Q Consensus 64 KSFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~p 105 (171)
-..|+|+.+|+==.++|.||...+.+|+. ...|+| |++|
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~vglV--t~~~ 68 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLAD-PGVGLV--TGLP 68 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhC-CCCcEE--Eecc
Confidence 67899999999889999999999999987 455555 6655
No 162
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=52.00 E-value=77 Score=25.36 Aligned_cols=91 Identities=10% Similarity=0.116 Sum_probs=49.5
Q ss_pred CCCCCcccEEEEcccccccChhhhhchhhhhhhhccCceEEEecC-CCcchh---hhhhhhhcCCCccccchhHHHHHHH
Q 030814 60 PYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGY-PGQQRA---KVAELSKFGRPAKMRSSSWWIRYFV 135 (171)
Q Consensus 60 PYR~KSFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~-pgq~~a---k~~elskfgr~ak~RsssWW~r~F~ 135 (171)
|+......+||+-+ .|+|++...+.-+.-+-..+....+||++. +..--. +-...-.|..+-.---..|..+++.
T Consensus 97 ~~~~~~~~vviiDe-~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~ 175 (319)
T PRK00440 97 PVGGAPFKIIFLDE-ADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAE 175 (319)
T ss_pred CCCCCCceEEEEeC-cccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHH
Confidence 44433456777776 599988776655555555566778888773 221100 0111112222222222567777887
Q ss_pred HhccccchHHHHHHHH
Q 030814 136 QTSLEENEPAVKKFEQ 151 (171)
Q Consensus 136 q~~leeNea~~kkfeq 151 (171)
+.|++=.+++...+-+
T Consensus 176 ~~~~~i~~~al~~l~~ 191 (319)
T PRK00440 176 NEGIEITDDALEAIYY 191 (319)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 8888666665555433
No 163
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=49.52 E-value=39 Score=29.87 Aligned_cols=96 Identities=13% Similarity=0.202 Sum_probs=64.1
Q ss_pred ccceeecCCchhHhHhhhhcccccccccccccccchhHHHHH-HhHhcc-----eeeeeecCCCCCCCCcccEEEEcccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKS-LVHKGI-----VRVADIKFPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~Cks-Lv~kG~-----VRvadikfpLPYR~KSFslVivSDaL 75 (171)
.+||++|=|=++..-.+-++-+...-||..++-- -..++. ....|+ |+.+|.... ...||=|++-.+.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q--~~~~~~r~~~~gl~~~v~v~l~d~rd~----~e~fDrIvSvgmf 147 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQ--LAYAEKRIAARGLEDNVEVRLQDYRDF----EEPFDRIVSVGMF 147 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHH--HHHHHHHHHHcCCCcccEEEecccccc----ccccceeeehhhH
Confidence 3799999999999999998888999999877532 223333 444555 445555332 2229999999999
Q ss_pred cccChhhhhchhhhhhhh-ccCceEEEec
Q 030814 76 DYLSPKYLNKTLPDLARV-ASDGVLIFAG 103 (171)
Q Consensus 76 dyLsprylNkTlPeLaRv-s~dgiVif~g 103 (171)
+|+.+++...-+--.-++ ..+|+++.-.
T Consensus 148 Ehvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 148 EHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred HHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 999986554433333332 3566665433
No 164
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=49.01 E-value=19 Score=27.06 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=30.0
Q ss_pred ecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeee
Q 030814 7 VGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVAD 54 (171)
Q Consensus 7 vGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvad 54 (171)
+|||.-..+++.+ + .+++++..-|+.|.+.|+|+--+
T Consensus 19 ~~~Dy~k~ia~~l--------~---~~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 19 AGPDYAKSIARRL--------K---IPLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HCCCcHHHHHHHH--------C---CCHHHHHHHHHHHHHCCCeEEec
Confidence 6899988888876 3 46677889999999999997544
No 165
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.77 E-value=48 Score=29.23 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=56.7
Q ss_pred ccceeecCCchhH-hHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccCh
Q 030814 2 HKVLHVGPDTCSV-VSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 80 (171)
Q Consensus 2 ~kVLHvGP~tC~v-Vs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLsp 80 (171)
++|+=+|-|.++. +.++|+..+-+.-|.+..+-++.+.-...|-+.|+.-.-.- .+ |=--+.||+||+|=++..-.|
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~-~~-~~~~~~~dlVV~Spgi~~~~p 92 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGE-NY-LDKLDGFDVIFKTPSMRIDSP 92 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCC-CC-hHHhccCCEEEECCCCCCCch
Confidence 5788888888865 22366666666666554443333333344666686443221 11 111156999999988876555
Q ss_pred hhh-----h-chhh--hh-hhhccCceEEEecCCC
Q 030814 81 KYL-----N-KTLP--DL-ARVASDGVLIFAGYPG 106 (171)
Q Consensus 81 ryl-----N-kTlP--eL-aRvs~dgiVif~g~pg 106 (171)
... | ..+. |+ .|....-+|..||--|
T Consensus 93 ~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnG 127 (458)
T PRK01710 93 ELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDG 127 (458)
T ss_pred HHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCC
Confidence 432 1 1111 22 2443334788888555
No 166
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=47.90 E-value=30 Score=28.15 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=34.0
Q ss_pred CCCCCcccEEEEcccccccChhhhhchhhhhhhhccCceEEEecC
Q 030814 60 PYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGY 104 (171)
Q Consensus 60 PYR~KSFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~ 104 (171)
+-....||+|+.-++|=|++++.-.+++--|.+.=+.|=.+|+|.
T Consensus 131 ~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 131 DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp ------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 445678999999999999999999999999999988888899984
No 167
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=46.61 E-value=69 Score=25.42 Aligned_cols=32 Identities=16% Similarity=0.011 Sum_probs=25.3
Q ss_pred ccceeecCCchhHhHhhhhccccccccccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD 33 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEPyd 33 (171)
..|||.+-||+++--.++......+-+||-..
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~ 82 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDR 82 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCH
Confidence 36899999999888888866666888888653
No 168
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=46.53 E-value=21 Score=33.48 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=36.2
Q ss_pred CCcccEEEEcccccccChhhhhchhhhhhhhc-cCceEEEec
Q 030814 63 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAG 103 (171)
Q Consensus 63 ~KSFslVivSDaLdyLsprylNkTlPeLaRvs-~dgiVif~g 103 (171)
..+-+.+|-+|+=|+|+--+||..+.|+.|-+ +...|||-+
T Consensus 325 ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRt 366 (414)
T COG5379 325 AGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred CCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEec
Confidence 56789999999999999999999999999965 556788876
No 169
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=45.55 E-value=45 Score=29.03 Aligned_cols=81 Identities=26% Similarity=0.340 Sum_probs=48.0
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcc------eeeee-ecCCCCCCCCcccEEEEcccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI------VRVAD-IKFPLPYRAKSFPLVIVSDAL 75 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~------VRvad-ikfpLPYR~KSFslVivSDaL 75 (171)
.||.||||.+.+-..|++. ....-.|| ++ .+-|..|-++-- |-.+| +|+++|==. -...|||+.=
T Consensus 33 ~VlEIGpG~GaLT~~Ll~~-~~~v~aiE---iD--~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~--~~~~vVaNlP 104 (259)
T COG0030 33 NVLEIGPGLGALTEPLLER-AARVTAIE---ID--RRLAEVLKERFAPYDNLTVINGDALKFDFPSLA--QPYKVVANLP 104 (259)
T ss_pred eEEEECCCCCHHHHHHHhh-cCeEEEEE---eC--HHHHHHHHHhcccccceEEEeCchhcCcchhhc--CCCEEEEcCC
Confidence 6999999999999999944 44444443 33 233444444421 33334 455555111 2245677777
Q ss_pred cccChhhhhchhhhhh
Q 030814 76 DYLSPKYLNKTLPDLA 91 (171)
Q Consensus 76 dyLsprylNkTlPeLa 91 (171)
=|+|..-+.|.+-+=-
T Consensus 105 Y~Isspii~kll~~~~ 120 (259)
T COG0030 105 YNISSPILFKLLEEKF 120 (259)
T ss_pred CcccHHHHHHHHhccC
Confidence 7788777777765533
No 170
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=45.45 E-value=47 Score=27.18 Aligned_cols=73 Identities=25% Similarity=0.224 Sum_probs=50.4
Q ss_pred chhHHHHHHhHhcceeeeee--cCCCC-CCCC----------------------cccEEEEcccccccChhhhhchhhhh
Q 030814 36 DADARCKSLVHKGIVRVADI--KFPLP-YRAK----------------------SFPLVIVSDALDYLSPKYLNKTLPDL 90 (171)
Q Consensus 36 d~d~~CksLv~kG~VRvadi--kfpLP-YR~K----------------------SFslVivSDaLdyLsprylNkTlPeL 90 (171)
..++.+|....++|..++-- -.++| ||+| .+|+||..-.-- -|+|..|.-|
T Consensus 50 ~~~~~~k~~~~~~i~~~at~~~~~~~~d~~~ky~~~~~~~~l~~p~w~g~~g~g~~Dl~iFiGv~~----yya~~~Ls~L 125 (167)
T PF02552_consen 50 NEEAIEKAIAKKNIPIAATGFNIIGMPDYRPKYPKIEPENELNDPHWNGTDGHGNYDLVIFIGVHC----YYANQVLSIL 125 (167)
T ss_dssp HHHHHHHHHHCCTSEEEEETCCHCCHCSSGCCE-HHHHHHHCCSTT--TTTSS---SEEEEES--H----HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcceeecccccccccccccccccccHHHhcCCCCCCccccCCcccEEEEecchH----HHHHHHHHHH
Confidence 35667888888998888653 45666 8877 788888877654 4899999999
Q ss_pred hhhccCceEEEecCCCcchhhh
Q 030814 91 ARVASDGVLIFAGYPGQQRAKV 112 (171)
Q Consensus 91 aRvs~dgiVif~g~pgq~~ak~ 112 (171)
---|.+-.+++.+.=||++|..
T Consensus 126 K~ftp~~~t~~~~~~yhpnA~~ 147 (167)
T PF02552_consen 126 KHFTPCLKTISCDRYYHPNADM 147 (167)
T ss_dssp HHH-TT-EEEE-SSS--TTSSE
T ss_pred hccCCceEEEEeccccCCCcce
Confidence 8888888999999889988754
No 171
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=45.03 E-value=7.9 Score=26.66 Aligned_cols=90 Identities=24% Similarity=0.306 Sum_probs=25.9
Q ss_pred CchhHhHhhhhcccccccccccccc-cchhHHHHHHhHhcceeeeeecCC--CCCC-CCcccEEEEcccccccChhhhhc
Q 030814 10 DTCSVVSTLLKEEETEAWGVEPYDI-EDADARCKSLVHKGIVRVADIKFP--LPYR-AKSFPLVIVSDALDYLSPKYLNK 85 (171)
Q Consensus 10 ~tC~vVs~llkee~teAWGVEPyd~-~d~d~~CksLv~kG~VRvadikfp--LPYR-~KSFslVivSDaLdyLsprylNk 85 (171)
-||.+.+.+.........+|++++- +.+....+..--.+.|++-.=.++ +|-- ..+|+++++ |+ +|-.+..++-
T Consensus 10 st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i-Dg-~H~~~~~~~d 87 (106)
T PF13578_consen 10 STLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI-DG-DHSYEAVLRD 87 (106)
T ss_dssp -----------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE-ES----HHHHHHH
T ss_pred ccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE-CC-CCCHHHHHHH
Confidence 3555555555433358899999984 234444444333344444221111 2111 467777765 43 2222222221
Q ss_pred hhhhhhhhccCceEEE
Q 030814 86 TLPDLARVASDGVLIF 101 (171)
Q Consensus 86 TlPeLaRvs~dgiVif 101 (171)
..==+-+++.+|||+|
T Consensus 88 l~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 88 LENALPRLAPGGVIVF 103 (106)
T ss_dssp HHHHGGGEEEEEEEEE
T ss_pred HHHHHHHcCCCeEEEE
Confidence 1111225667788776
No 172
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=43.02 E-value=12 Score=33.52 Aligned_cols=70 Identities=30% Similarity=0.438 Sum_probs=50.6
Q ss_pred cccccccccchhHHHHHHh----Hhcc--eeeeeecCCCCCCCCcccEEEEcccccccChhhhhc-hhhhhhhhccCc
Q 030814 27 WGVEPYDIEDADARCKSLV----HKGI--VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNK-TLPDLARVASDG 97 (171)
Q Consensus 27 WGVEPyd~~d~d~~CksLv----~kG~--VRvadikfpLPYR~KSFslVivSDaLdyLsprylNk-TlPeLaRvs~dg 97 (171)
.|+.|-...=--.-|.-|+ ++|. +-+||+ .-+|+|.-|||..|++-.+-||+-+-.-+ ++-|+.|+-..|
T Consensus 60 ~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~-l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpg 136 (293)
T KOG1331|consen 60 LGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADA-LKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPG 136 (293)
T ss_pred CcCCCcceeeecchhhhhccccccCCCceeehhhh-hcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence 3444522222233444444 4565 889999 99999999999999999999999987764 567888876654
No 173
>PF03815 LCCL: LCCL domain; InterPro: IPR004043 The LCCL domain has been named after the best characterised proteins that were found to contain it, namely Limulus factor C, Coch-5b2 and Lgl1. It is an about 100 amino acids domain whose C-terminal part contains a highly conserved histidine in a conserved motif YxxxSxxCxAAVHxGVI. The LCCL module is thought to be an autonomously folding domain that has been used for the construction of various modular proteins through exon-shuffling. It has been found in various metazoan proteins in association with complement B-type domains, C-type lectin domains, von Willebrand type A domains, CUB domains, discoidin lectin domains or CAP domains. It has been proposed that the LCCL domain could be involved in lipopolysaccharide (LPS) binding [, ]. Secondary structure prediction suggests that the LCCL domain contains six beta strands and two alpha helices []. Some proteins known to contain a LCCL domain include Limulus factor C, a LPS endotoxin-sensitive trypsin type serine protease which serves to protect the organism from bacterial infection; vertebrate cochlear protein cochlin or coch-5b2 (Cochlin is probably a secreted protein, mutations affecting the LCCL domain of coch-5b2 cause the deafness disorder DFNA9 in humans); and mammalian late gestation lung protein Lgl1, contains two tandem copies of the LCCL domain [].; PDB: 1JBI_A.
Probab=42.31 E-value=14 Score=27.22 Aligned_cols=28 Identities=21% Similarity=0.716 Sum_probs=22.3
Q ss_pred cccccccccccccccchhHHHHHHhHhcce
Q 030814 21 EEETEAWGVEPYDIEDADARCKSLVHKGIV 50 (171)
Q Consensus 21 ee~teAWGVEPyd~~d~d~~CksLv~kG~V 50 (171)
+.....||-.+|..+ ++-|++-|+.|++
T Consensus 31 ~~~~~v~Gt~~Y~~~--SsIC~AAIHaGvi 58 (96)
T PF03815_consen 31 DSKGTVYGTDVYSAD--SSICKAAIHAGVI 58 (96)
T ss_dssp SSS--EESSSSEETT--SBHHHHHHHHTSS
T ss_pred CCCCeEECCccccCC--CHHHHHHHhCCEE
Confidence 344889999999865 7899999999998
No 174
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=41.05 E-value=9.6 Score=30.49 Aligned_cols=52 Identities=19% Similarity=0.377 Sum_probs=30.1
Q ss_pred eeecCCCCCCCCcccEEE-EcccccccChhhhhchhhhhhhhccCceEEEecCCCcchhhhh
Q 030814 53 ADIKFPLPYRAKSFPLVI-VSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVA 113 (171)
Q Consensus 53 adikfpLPYR~KSFslVi-vSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~ 113 (171)
.++-+.--||+++|+=++ -+++++.|.. +.+-.....++|+|-||.=+.-++
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~---------~i~~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKS---------YVKEKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHH---------HHhCCCCCeEEEECCCCCCHHHHH
Confidence 345556679999998544 3334433321 221111224799999999875444
No 175
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=39.80 E-value=1.5e+02 Score=24.45 Aligned_cols=141 Identities=16% Similarity=0.208 Sum_probs=75.0
Q ss_pred CccceeecCCchhH-------hHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcc
Q 030814 1 MHKVLHVGPDTCSV-------VSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSD 73 (171)
Q Consensus 1 m~kVLHvGP~tC~v-------Vs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSD 73 (171)
|.-.|=.|++.-.+ +.+++ .++.+..-+.-+|..|.+. -..++ +.+ --+|+= -..-+|++-|
T Consensus 1 ~~~yll~G~e~~l~~~~~~~l~~~~~-~~~~~~fn~~~~d~~~~~~-~~~~~-------~~~-~t~pff-~~~rlVvv~~ 69 (326)
T PRK07452 1 MPIYLYWGEDDFALNQAIEKLIDQVV-DPEWKSFNYSRLDGDDADQ-AIQAL-------NEA-MTPPFG-SGGRLVWLKN 69 (326)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHhC-CchhhhcchhhcCCccchH-HHHHH-------HHh-cCCCCC-CCceEEEEeC
Confidence 33455567777322 23333 3445566666666665542 11221 111 112332 1245788887
Q ss_pred cccc---cChhhhhchhhhhhhhccCceEEEec--CCCcchhhhhhhhhcCCCcccc-----c----hhHHHHHHHHhcc
Q 030814 74 ALDY---LSPKYLNKTLPDLARVASDGVLIFAG--YPGQQRAKVAELSKFGRPAKMR-----S----SSWWIRYFVQTSL 139 (171)
Q Consensus 74 aLdy---LsprylNkTlPeLaRvs~dgiVif~g--~pgq~~ak~~elskfgr~ak~R-----s----ssWW~r~F~q~~l 139 (171)
+ ++ .+.+-.|.-..-|.+...+.++||+. -+...+.....+.|+|...... . ..|=...|.+.|+
T Consensus 70 ~-~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~ 148 (326)
T PRK07452 70 S-PLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGV 148 (326)
T ss_pred c-hhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCC
Confidence 6 33 33444444444455667788888853 2222223334566666533221 1 3566778888999
Q ss_pred ccchHHHHHHHHHH
Q 030814 140 EENEPAVKKFEQAA 153 (171)
Q Consensus 140 eeNea~~kkfeqa~ 153 (171)
.-+.++...+-+..
T Consensus 149 ~i~~~a~~~L~~~~ 162 (326)
T PRK07452 149 KLTPEAAELLAEAV 162 (326)
T ss_pred CCCHHHHHHHHHHh
Confidence 98888887776554
No 176
>smart00603 LCCL LCCL domain.
Probab=39.75 E-value=23 Score=25.89 Aligned_cols=29 Identities=24% Similarity=0.546 Sum_probs=24.6
Q ss_pred cccccccccccccccchhHHHHHHhHhccee
Q 030814 21 EEETEAWGVEPYDIEDADARCKSLVHKGIVR 51 (171)
Q Consensus 21 ee~teAWGVEPyd~~d~d~~CksLv~kG~VR 51 (171)
+.....||-..|..+ ++-|++-|+.|++.
T Consensus 29 ~~~~~V~Gt~~Y~~d--S~iC~AAiHaGvi~ 57 (85)
T smart00603 29 LEKAKVFGTIVYASL--SSICRAAVHAGVIS 57 (85)
T ss_pred cCCCeEEeccccCCC--CHHHHHhhhCCEEc
Confidence 344889999999875 78999999999984
No 177
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.65 E-value=25 Score=26.09 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.3
Q ss_pred hhHHHHHHHHhccccchHHHHH
Q 030814 127 SSWWIRYFVQTSLEENEPAVKK 148 (171)
Q Consensus 127 ssWW~r~F~q~~leeNea~~kk 148 (171)
-+-|.+||.+-||-+|+--.+.
T Consensus 11 ~~~wk~F~R~LGLsdn~Ie~~E 32 (77)
T cd08815 11 ARRWKEFVRTLGLREAEIEAVE 32 (77)
T ss_pred hHHHHHHHHHcCCcHhHHHHHH
Confidence 3569999999999999943333
No 178
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=39.58 E-value=21 Score=25.40 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=22.5
Q ss_pred cceeecCCchhHhHhhhhccc-cccccccccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEE-TEAWGVEPYD 33 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~-teAWGVEPyd 33 (171)
.|||||-+++..--.+++... ...++|||-.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~ 32 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP 32 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence 479999999988665554432 2699999874
No 179
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=39.10 E-value=21 Score=28.33 Aligned_cols=29 Identities=41% Similarity=0.628 Sum_probs=24.6
Q ss_pred hhhhchhhhhhh----------hccCceEEEecCCCcch
Q 030814 81 KYLNKTLPDLAR----------VASDGVLIFAGYPGQQR 109 (171)
Q Consensus 81 rylNkTlPeLaR----------vs~dgiVif~g~pgq~~ 109 (171)
.-++.+|-+|.| ||+||++|-...|+..-
T Consensus 3 ~~l~~vL~~l~~~v~gv~ga~Ivs~DGL~ia~~~p~~~d 41 (119)
T COG2018 3 NMLDEVLLDLNRNVPGVRGALVVSKDGLPIAAELPGNVD 41 (119)
T ss_pred hHHHHHHHHHHhhccCceEEEEEccCCceEeecCCCccc
Confidence 456778888888 89999999999999875
No 180
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=39.07 E-value=14 Score=26.81 Aligned_cols=15 Identities=53% Similarity=0.968 Sum_probs=12.9
Q ss_pred hcCCCccccchhHHH
Q 030814 117 KFGRPAKMRSSSWWI 131 (171)
Q Consensus 117 kfgr~ak~RsssWW~ 131 (171)
-|||.+|||+-+|=.
T Consensus 38 Gfgrs~r~R~y~W~~ 52 (61)
T COG2126 38 GFGRSARMRSYNWQA 52 (61)
T ss_pred CCCCccccccchhhh
Confidence 499999999999844
No 181
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=38.87 E-value=42 Score=25.48 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=48.6
Q ss_pred hHhHhhhhcccccccccccccccchhHHHHHHhHhc----ceeeeeecCCCCCCCCcccEEEEcccccccChhhhhchhh
Q 030814 13 SVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKG----IVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLP 88 (171)
Q Consensus 13 ~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG----~VRvadikfpLPYR~KSFslVivSDaLdyLsprylNkTlP 88 (171)
.++.+.+.+++..+.+.+-|..+ +|=| -||++|=.-...++...+|++|+.|. ..+++.+
T Consensus 10 ~ila~a~~~~G~~v~~~~~ygs~---------~rGG~~~~~vris~~~~~~~~~~~~~Dilv~l~~------~~~~~~~- 73 (173)
T PF01558_consen 10 KILARAAAREGYYVQSTPEYGSE---------IRGGPVVSHVRISDEPIIPSPPVGEADILVALDP------EALERHL- 73 (173)
T ss_dssp HHHHHHHHHTTSEEEEEEEEESS---------SSSSCEEEEEEEESS--SSSS-TSSESEEEESSH------HHHHHCG-
T ss_pred HHHHHHHHHcCCCEEEEeCCChh---------hcCCeEEEEEEEecCcCccCcccCCCCEEEEcCH------HHHHHHh-
Confidence 35566667888888888888877 3333 36788731344555589999999875 3344333
Q ss_pred hhhhhccCceEEEecC
Q 030814 89 DLARVASDGVLIFAGY 104 (171)
Q Consensus 89 eLaRvs~dgiVif~g~ 104 (171)
..+..+|+||.-..
T Consensus 74 --~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 74 --KGLKPGGVVIINSS 87 (173)
T ss_dssp --TTCETTEEEEEETT
T ss_pred --cCcCcCeEEEEECC
Confidence 34778899998774
No 182
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=38.84 E-value=28 Score=25.89 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=52.3
Q ss_pred cEEEEcccccccChhhhhchhhhhhhh--ccCceEEEecCCCcc--hhhhhhhhhcCCCccccchhHHHHHHHHhccccc
Q 030814 67 PLVIVSDALDYLSPKYLNKTLPDLARV--ASDGVLIFAGYPGQQ--RAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEEN 142 (171)
Q Consensus 67 slVivSDaLdyLsprylNkTlPeLaRv--s~dgiVif~g~pgq~--~ak~~elskfgr~ak~RsssWW~r~F~q~~leeN 142 (171)
-+|+|-|+-+.-+-..+...+-++.+- -.+..++.+|..--. +....++.++.+-+++....| .|..++-.++
T Consensus 79 ~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~---~~~~~SAk~g 155 (168)
T cd04149 79 GLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNW---YVQPSCATSG 155 (168)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcE---EEEEeeCCCC
Confidence 378899999876665555555454431 234556666654322 234566767666666665555 4567788888
Q ss_pred hHHHHHHHHHH
Q 030814 143 EPAVKKFEQAA 153 (171)
Q Consensus 143 ea~~kkfeqa~ 153 (171)
+-....|+..+
T Consensus 156 ~gv~~~~~~l~ 166 (168)
T cd04149 156 DGLYEGLTWLS 166 (168)
T ss_pred CChHHHHHHHh
Confidence 88777777654
No 183
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=37.24 E-value=14 Score=26.76 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=20.0
Q ss_pred cccccccccccchh--------HHHHHHhHhcceeeeee
Q 030814 25 EAWGVEPYDIEDAD--------ARCKSLVHKGIVRVADI 55 (171)
Q Consensus 25 eAWGVEPyd~~d~d--------~~CksLv~kG~VRvadi 55 (171)
=.|||.|+-+++.+ .-++.+.++|++.-+|.
T Consensus 57 l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~ 95 (117)
T PF02887_consen 57 LYWGVYPVLIEEFDKDTEELIAEALEYAKERGLLKPGDK 95 (117)
T ss_dssp GSTTEEEEECSSHSHSHHHHHHHHHHHHHHTTSS-TTSE
T ss_pred cccceEEEEeccccccHHHHHHHHHHHHHHcCCCCCCCE
Confidence 46999996544433 34556677888777664
No 184
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=37.11 E-value=95 Score=26.16 Aligned_cols=97 Identities=16% Similarity=0.096 Sum_probs=63.1
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhH--------------HHHHHhHhc--ceeeeeecCCCCCCC---
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADA--------------RCKSLVHKG--IVRVADIKFPLPYRA--- 63 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~--------------~CksLv~kG--~VRvadikfpLPYR~--- 63 (171)
+||..|=|...=+.-|. +.+-..-|||.++.- ++. .+....+.+ -+.++|+ |.||--+
T Consensus 46 rvLvPgCGkg~D~~~LA-~~G~~V~GvDlS~~A-i~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~-f~l~~~~~~~ 122 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFL-SKGVKVIGIELSEKA-VLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI-FNLPKIANNL 122 (226)
T ss_pred eEEEeCCCChHHHHHHH-hCCCcEEEEecCHHH-HHHHHHHcCCCcceecccccceeccCceEEEEccC-cCCCcccccc
Confidence 67778877777666666 667778898877653 111 122222333 5678999 9997532
Q ss_pred CcccEEEEcccccccChhhhhchhhhhhh-hccCceEEEe
Q 030814 64 KSFPLVIVSDALDYLSPKYLNKTLPDLAR-VASDGVLIFA 102 (171)
Q Consensus 64 KSFslVivSDaLdyLsprylNkTlPeLaR-vs~dgiVif~ 102 (171)
..||+|+-.=+|=.|.|.-=.+-.--|.+ +...|.++.+
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 47999999999999988766665555666 3333433333
No 185
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=37.08 E-value=1.6e+02 Score=23.92 Aligned_cols=84 Identities=7% Similarity=0.073 Sum_probs=48.9
Q ss_pred cccEEEEcccccccChhhhhchhhhhhhhccCceEEEec-CCCcchhhhhhhhhcCCCccc------cchhHHHHHHHHh
Q 030814 65 SFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG-YPGQQRAKVAELSKFGRPAKM------RSSSWWIRYFVQT 137 (171)
Q Consensus 65 SFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g-~pgq~~ak~~elskfgr~ak~------RsssWW~r~F~q~ 137 (171)
...+||+-|+ |.|++.-.|.-+.-|.....+..+|+++ .|... ...|.+-+..+.+ --..|-.+.+.+.
T Consensus 125 ~~~vlilDe~-~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~---~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 125 DYKTILLDNA-EALREDAQQALRRIMEQYSRTCRFIIATRQPSKL---IPPIRSRCLPLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred CCcEEEEeCc-ccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC---chhhcCCceEEEecCCCHHHHHHHHHHHHHHc
Confidence 3467777776 9998876665444444556667777776 44321 2234333444433 2245666777777
Q ss_pred ccccchHHHHHHHHH
Q 030814 138 SLEENEPAVKKFEQA 152 (171)
Q Consensus 138 ~leeNea~~kkfeqa 152 (171)
|++-.+++...+.+.
T Consensus 201 ~~~~~~~al~~l~~~ 215 (337)
T PRK12402 201 GVDYDDDGLELIAYY 215 (337)
T ss_pred CCCCCHHHHHHHHHH
Confidence 877666666555443
No 186
>PF08346 AntA: AntA/AntB antirepressor; InterPro: IPR013557 In Escherichia coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the Bacteriophage 933W.
Probab=36.86 E-value=25 Score=25.10 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=27.3
Q ss_pred hhhhhhcCCCccccchhHHHHHHHHhccccchHHH
Q 030814 112 VAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPAV 146 (171)
Q Consensus 112 ~~elskfgr~ak~RsssWW~r~F~q~~leeNea~~ 146 (171)
+++|-+|.-- |-|-++|+.+-..+.|+.||+.-.
T Consensus 3 AR~Lh~~L~v-~~~Fs~Wik~ri~~y~f~e~~Df~ 36 (71)
T PF08346_consen 3 ARDLHEFLEV-KKRFSTWIKRRIEEYGFVENVDFI 36 (71)
T ss_pred HHHHHHHHcC-CCcHHHHHHHHhhhcCcccCCCce
Confidence 4566666654 889999999999999999998643
No 187
>PF14035 YlzJ: YlzJ-like protein
Probab=36.25 E-value=13 Score=26.09 Aligned_cols=15 Identities=33% Similarity=0.837 Sum_probs=13.4
Q ss_pred EEEcccccccChhhh
Q 030814 69 VIVSDALDYLSPKYL 83 (171)
Q Consensus 69 VivSDaLdyLspryl 83 (171)
+|++|--|||.|+|.
T Consensus 46 llStnP~dYLnp~~~ 60 (66)
T PF14035_consen 46 LLSTNPQDYLNPDYQ 60 (66)
T ss_pred EecCChHHHcCccCC
Confidence 689999999999984
No 188
>PRK06223 malate dehydrogenase; Reviewed
Probab=36.15 E-value=1e+02 Score=25.44 Aligned_cols=110 Identities=17% Similarity=0.279 Sum_probs=62.3
Q ss_pred CccceeecCCc-hhHhHhhhhcccc-cccccccccccc--hhHHHHHHhHhcceee--eeecCCCCCC-CCcccEEEEcc
Q 030814 1 MHKVLHVGPDT-CSVVSTLLKEEET-EAWGVEPYDIED--ADARCKSLVHKGIVRV--ADIKFPLPYR-AKSFPLVIVSD 73 (171)
Q Consensus 1 m~kVLHvGP~t-C~vVs~llkee~t-eAWGVEPyd~~d--~d~~CksLv~kG~VRv--adikfpLPYR-~KSFslVivSD 73 (171)
|.||-=+|-|+ .+.+..++...+. |..- ||+.. +.+...+|.+.....- .-|.+.-.|. .+.=|+||.+-
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L---~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~ 78 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVL---FDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITA 78 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEE---EECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECC
Confidence 67888888887 5556665544332 4444 44422 3344444444332221 1222222232 25567888763
Q ss_pred cc---------cc--cChhhhhchhhhhhhhccCceEEEecCCCcchhhhh
Q 030814 74 AL---------DY--LSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVA 113 (171)
Q Consensus 74 aL---------dy--LsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~ 113 (171)
-. |. -.-+++....+++.+...++++|.+++|--.-+.+.
T Consensus 79 ~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~ 129 (307)
T PRK06223 79 GVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA 129 (307)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH
Confidence 21 11 122567778889999999999999999976655444
No 189
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=35.15 E-value=17 Score=22.81 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=19.7
Q ss_pred cccccccccccchhHHHHHHhHhcceeee
Q 030814 25 EAWGVEPYDIEDADARCKSLVHKGIVRVA 53 (171)
Q Consensus 25 eAWGVEPyd~~d~d~~CksLv~kG~VRva 53 (171)
+.+|+++.- +.+..+.|.++|+|+-.
T Consensus 29 ~~l~~~~~~---vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 29 ERLGISKST---VSRIVKRLEKKGLVERE 54 (62)
T ss_dssp HHHTS-HHH---HHHHHHHHHHTTSEEEE
T ss_pred HHHCcCHHH---HHHHHHHHHHCCCEEEe
Confidence 567777754 56889999999999854
No 190
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=34.35 E-value=20 Score=26.37 Aligned_cols=16 Identities=38% Similarity=0.964 Sum_probs=13.0
Q ss_pred hccCc-eEEEecCCCcc
Q 030814 93 VASDG-VLIFAGYPGQQ 108 (171)
Q Consensus 93 vs~dg-iVif~g~pgq~ 108 (171)
+++|| |.||-|.|+..
T Consensus 15 i~~dG~LslF~G~P~~~ 31 (75)
T PF08955_consen 15 ISEDGVLSLFEGPPGEE 31 (75)
T ss_dssp EETTTEEEEBSSS-STT
T ss_pred EcCCCcEEEEecCCCCC
Confidence 57788 89999999987
No 191
>PF03221 HTH_Tnp_Tc5: Tc5 transposase DNA-binding domain; InterPro: IPR006600 This entry represents a DNA-binding helix-turn-helix domain found in the pogo family of transposable elements, the centromere protein Cenp-B, and yeast PCD2. There is extensive sequence similarity between Cenp-B and transposase proteins encoded by the pogo superfamily of transposable elements, which includes the human Tigger and Jerky elements []. The HTH domain is composed of three alpha-helices, with the second and third helices connected via a turn comprise the helix-turn-helix motif. Helix 3 is termed the recognition helix as it binds the DNA major groove, as in other HTHs []. This conserved DNA-binding domain is found in the following proteins: Cenp-B (major centromere autoantigen B or centromere protein B), which appears to organise arrays of centromere satellite DNA into a higher order structure that then direct centromere formation and kinetochore assembly in mammalian chromosomes. The N terminus of Cenp-B contains two DNA-binding HTH domains, which bind to adjacent major grooves of DNA: a psq-type HTH domain followed by a CenpB-type HTH domain, which together bind specifically to the Cenp-B box, which occurs in alpha-satellite DNA in human centromeres []. Pogo family transposable elements includes both Tigger and Jerky elements []. Pogo contains two open reading frames flanked by inverted repeats. The N-terminal region of pogo transposase contains a Cenp-B-type HTH DNA-binding domain []. Mammalian jerky protein, involved in epileptic seizures in mice []. PDC2 (Pyruvate DeCarboxylase 2), which is a transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes. PDC2 may be important for a high basal level of PDC gene expression or play a positive role in the autoregulation control of PDC1 and PDC5 [, ]. ; PDB: 1HLV_A 1IUF_A.
Probab=34.35 E-value=44 Score=21.14 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=21.4
Q ss_pred Ccchhhhhhh----hhcCCCccccchhHHHHHHHHhccc
Q 030814 106 GQQRAKVAEL----SKFGRPAKMRSSSWWIRYFVQTSLE 140 (171)
Q Consensus 106 gq~~ak~~el----skfgr~ak~RsssWW~r~F~q~~le 140 (171)
..-+.++.++ ..-+.+...-|..|+.+|...++|.
T Consensus 25 ~~i~~~A~~i~~~~~~~~~~~~~~s~~W~~~F~~Rh~i~ 63 (66)
T PF03221_consen 25 EMIREKAKEIAELAKSPGPPEFKASKGWLDRFKKRHGIK 63 (66)
T ss_dssp HHHHHHHHHHHH-SCCCT-TT-S--CHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHhhcccccCcCCcccHHHHHHHHHcCCC
Confidence 3456677777 3455666778899999999988774
No 192
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=34.33 E-value=35 Score=26.20 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=29.6
Q ss_pred ceeeeeecCCCCCCCCcccEEEEcccccccChhhhhchhhhhhhhccCceEEEec
Q 030814 49 IVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 49 ~VRvadikfpLPYR~KSFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g 103 (171)
|+.+.|+++.- +...+...+++++.++-+... .+||++|
T Consensus 3 i~~isD~H~~~---------------~~~~~~~~~~~~~~~i~~~~~-D~~v~tG 41 (301)
T COG1409 3 IAHISDLHLGA---------------LGVDSEELLEALLAAIEQLKP-DLLVVTG 41 (301)
T ss_pred EEEEecCcccc---------------cccchHHHHHHHHHHHhcCCC-CEEEEcc
Confidence 66777887765 677888889998888876666 5667788
No 193
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=34.24 E-value=21 Score=32.29 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=24.7
Q ss_pred ccccccChhhhhchhhhhhhhccCceEEEec
Q 030814 73 DALDYLSPKYLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 73 DaLdyLsprylNkTlPeLaRvs~dgiVif~g 103 (171)
...+|||-..|..|+-|.+..-++||||--+
T Consensus 274 ~~~~fLs~~DL~~TigesaalGa~GvViWG~ 304 (337)
T PF01630_consen 274 STDEFLSQEDLVNTIGESAALGAAGVVIWGS 304 (337)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT-SEEEEE--
T ss_pred CccccchhhHHHHHHHHHHHcCCCeEEEeec
Confidence 4689999999999999999999999999876
No 194
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=33.33 E-value=66 Score=25.29 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=42.3
Q ss_pred hhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccChhhhhchhhhhhhhccC
Q 030814 17 TLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASD 96 (171)
Q Consensus 17 ~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLsprylNkTlPeLaRvs~d 96 (171)
.....++-.+-+.+-|-.+---... .--||++|+.-|++.+ ...|++|+-|...+. +.++ .+..+
T Consensus 22 ~aa~~~G~~v~~~~~yg~~~RGG~~-----~s~vris~i~sp~~~~-~~~Dilvald~~~~~------~~~~---~l~~~ 86 (189)
T TIGR03334 22 EAALKAGLPVRAAETHGMAQRGGSV-----INHIRIGEVYGSMIPE-GGADLLLAFEPLEAL------RYLP---YLSEG 86 (189)
T ss_pred HHHHHcCCCeEeeeccCccccCCeE-----EEEEEEccccCCccCC-CCCCEEEEeCHHHHH------HHHH---hcCCC
Confidence 3444566666666666655111111 1157888865565554 567999998876542 3333 45677
Q ss_pred ceEEEec
Q 030814 97 GVLIFAG 103 (171)
Q Consensus 97 giVif~g 103 (171)
|+||.-.
T Consensus 87 g~ii~n~ 93 (189)
T TIGR03334 87 GEVILNT 93 (189)
T ss_pred cEEEEeC
Confidence 8887654
No 195
>PRK04195 replication factor C large subunit; Provisional
Probab=32.23 E-value=1.6e+02 Score=26.52 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=66.8
Q ss_pred cceeecCCchh---HhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccC
Q 030814 3 KVLHVGPDTCS---VVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 3 kVLHvGP~tC~---vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLs 79 (171)
.+|-.||--|+ ++..|.++- |.+..++.-.|..++..++.=+-..+... ++ -...+.+||+-| .|.|+
T Consensus 41 ~lLL~GppG~GKTtla~ala~el-----~~~~ielnasd~r~~~~i~~~i~~~~~~~-sl--~~~~~kvIiIDE-aD~L~ 111 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDY-----GWEVIELNASDQRTADVIERVAGEAATSG-SL--FGARRKLILLDE-VDGIH 111 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEcccccccHHHHHHHHHHhhccC-cc--cCCCCeEEEEec-Ccccc
Confidence 46667776654 666676654 44444443223223333332211122110 10 012345666544 68887
Q ss_pred hhh----hhchhhhhhhhccCceEEEecCCCcchhhhhhhhh------cCCCccccchhHHHHHHHHhccccchHHHHHH
Q 030814 80 PKY----LNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSK------FGRPAKMRSSSWWIRYFVQTSLEENEPAVKKF 149 (171)
Q Consensus 80 pry----lNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elsk------fgr~ak~RsssWW~r~F~q~~leeNea~~kkf 149 (171)
.+. ++. |=++..-+...+|+.+..|...+. ..|.. |.+|-.-.-..|..+.+.+.|++-++.+...+
T Consensus 112 ~~~d~~~~~a-L~~~l~~~~~~iIli~n~~~~~~~--k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~I 188 (482)
T PRK04195 112 GNEDRGGARA-ILELIKKAKQPIILTANDPYDPSL--RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEI 188 (482)
T ss_pred cccchhHHHH-HHHHHHcCCCCEEEeccCccccch--hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 632 222 112222233344444445543332 23433 45554445567888888888988777766665
Q ss_pred HH
Q 030814 150 EQ 151 (171)
Q Consensus 150 eq 151 (171)
-+
T Consensus 189 a~ 190 (482)
T PRK04195 189 AE 190 (482)
T ss_pred HH
Confidence 44
No 196
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=32.15 E-value=1.3e+02 Score=24.78 Aligned_cols=90 Identities=21% Similarity=0.296 Sum_probs=52.0
Q ss_pred cceeecCCch--hHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccCh
Q 030814 3 KVLHVGPDTC--SVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 80 (171)
Q Consensus 3 kVLHvGP~tC--~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLsp 80 (171)
+|.=||.|.. ++...| .+.+-+.+|+.+. ...+..+...|.+....-... -.+..|+||.+ +++
T Consensus 2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~-----~~~~~~a~~~g~~~~~~~~~~---~~~~aDlVila-----vp~ 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRR-----ESTCERAIERGLVDEASTDLS---LLKDCDLVILA-----LPI 67 (279)
T ss_pred eEEEEeecHHHHHHHHHH-HHCCCEEEEEECC-----HHHHHHHHHCCCcccccCCHh---HhcCCCEEEEc-----CCH
Confidence 4666888875 344444 4555566666542 234566677787643321111 13567899887 566
Q ss_pred hhhhchhhhhhhh-ccCceEEEec-CCC
Q 030814 81 KYLNKTLPDLARV-ASDGVLIFAG-YPG 106 (171)
Q Consensus 81 rylNkTlPeLaRv-s~dgiVif~g-~pg 106 (171)
.++-+.++++... ..+.+|+-+| .+.
T Consensus 68 ~~~~~~~~~l~~~l~~~~ii~d~~Svk~ 95 (279)
T PRK07417 68 GLLLPPSEQLIPALPPEAIVTDVGSVKA 95 (279)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCcchHH
Confidence 6777778888664 4455555444 443
No 197
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=31.95 E-value=50 Score=26.09 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=42.7
Q ss_pred cEEEEcccccccChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhh--------hhcCCCccccchhHHHH
Q 030814 67 PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL--------SKFGRPAKMRSSSWWIR 132 (171)
Q Consensus 67 slVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~el--------skfgr~ak~RsssWW~r 132 (171)
-+||++|..-. ++-.++.+.+-+-+++.+-.+.++|.++--+.-+..+ -++|++..++.-..+..
T Consensus 39 gvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls 111 (211)
T cd03756 39 GVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKIC 111 (211)
T ss_pred EEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 47888998865 5545567888899999999999999887653333222 13555555544444443
No 198
>CHL00181 cbbX CbbX; Provisional
Probab=31.81 E-value=1.2e+02 Score=25.82 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=37.0
Q ss_pred ccCceEEEecCCCcchhhh----hhhhhcCCCccccc------hhHHHHHHHHhccccchHHHHHHHHHHhhccCCC
Q 030814 94 ASDGVLIFAGYPGQQRAKV----AELSKFGRPAKMRS------SSWWIRYFVQTSLEENEPAVKKFEQAASKKSYKP 160 (171)
Q Consensus 94 s~dgiVif~g~pgq~~ak~----~elskfgr~ak~Rs------ssWW~r~F~q~~leeNea~~kkfeqa~~k~sy~p 160 (171)
..+.+||++|++..-..-. +=.+.|..-+++.+ ...|.+++.+.+..-.+.+.+.+-+...+.++.|
T Consensus 159 ~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~ 235 (287)
T CHL00181 159 RDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQP 235 (287)
T ss_pred CCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCC
Confidence 4567889999876421100 11222322222221 3578888888776666666666666655555543
No 199
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=31.73 E-value=61 Score=26.19 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=39.0
Q ss_pred cccEEEEcccccccChhhhhchhhhhhhhccCceEEE----ecCCCcchhhhhhhhhcCCCc
Q 030814 65 SFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIF----AGYPGQQRAKVAELSKFGRPA 122 (171)
Q Consensus 65 SFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif----~g~pgq~~ak~~elskfgr~a 122 (171)
.=.+||+||..|--.+..+-..+.+|.|=...-+.+- .+.|+.... ...+..++.++
T Consensus 150 ~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~~~~~~~~~~~~-~~~~~~~~~~v 210 (222)
T PF05762_consen 150 RTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPLPRAGWPGYDPV-ARGYRAALPYV 210 (222)
T ss_pred CcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCcccccCCCCChH-HHHHHHhCChh
Confidence 4468999999988888888777777777554433332 245677644 77777776653
No 200
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=31.64 E-value=1.1e+02 Score=25.36 Aligned_cols=52 Identities=10% Similarity=0.279 Sum_probs=26.7
Q ss_pred eeeeeecCCCCCCCCcccEEEEcccc-c-ccChhhhhchhhhhhhhccCceEEEec
Q 030814 50 VRVADIKFPLPYRAKSFPLVIVSDAL-D-YLSPKYLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 50 VRvadikfpLPYR~KSFslVivSDaL-d-yLsprylNkTlPeLaRvs~dgiVif~g 103 (171)
|+-.+|.+ +|=-.++|-+++.||.= . +.+++.+++.+-.+.+... .+|+++|
T Consensus 35 v~~~~i~~-~~~~~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~p-DlVli~G 88 (271)
T PRK11340 35 LIRHRLAF-FKDNAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKP-DLILLGG 88 (271)
T ss_pred EEEEEccC-CCCCCCCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCC-CEEEEcc
Confidence 44444531 44334568899999962 1 1123344443322222333 4788888
No 201
>PLN02672 methionine S-methyltransferase
Probab=31.00 E-value=40 Score=34.81 Aligned_cols=69 Identities=7% Similarity=-0.035 Sum_probs=41.9
Q ss_pred cceeecCCchhHhHhhhhccc-cccccccccc--ccchhHHHHHH-----------------hHhcceeeeeecCCCCCC
Q 030814 3 KVLHVGPDTCSVVSTLLKEEE-TEAWGVEPYD--IEDADARCKSL-----------------VHKGIVRVADIKFPLPYR 62 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~-teAWGVEPyd--~~d~d~~CksL-----------------v~kG~VRvadikfpLPYR 62 (171)
+||++|.||+.|--.|.++.. ....|||-++ ++-+..|.+.. ..+=-+..+|+--+++=.
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~ 200 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN 200 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcccc
Confidence 699999999998888877643 5677776554 34455555431 111233556874444211
Q ss_pred CCcccEEEE
Q 030814 63 AKSFPLVIV 71 (171)
Q Consensus 63 ~KSFslViv 71 (171)
...||+||+
T Consensus 201 ~~~fDlIVS 209 (1082)
T PLN02672 201 NIELDRIVG 209 (1082)
T ss_pred CCceEEEEE
Confidence 236998765
No 202
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=30.55 E-value=37 Score=26.32 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=21.5
Q ss_pred hhhhchhhhhhhhcc-CceEEEecCCC
Q 030814 81 KYLNKTLPDLARVAS-DGVLIFAGYPG 106 (171)
Q Consensus 81 rylNkTlPeLaRvs~-dgiVif~g~pg 106 (171)
--+|.|+++|.+.+. ...||+.|--.
T Consensus 72 TlvN~Ti~~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 72 TLVNGTIDDILELARNAREVILYGPSA 98 (147)
T ss_dssp HCCTTTHHHHHHHTTTSSEEEEESCCG
T ss_pred eeecCCHHHHHHhCccCCeEEEEecCc
Confidence 458999999999998 78888888433
No 203
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=30.27 E-value=53 Score=21.52 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=17.1
Q ss_pred hhHHHHHHhHhcceeeeeec
Q 030814 37 ADARCKSLVHKGIVRVADIK 56 (171)
Q Consensus 37 ~d~~CksLv~kG~VRvadik 56 (171)
+.+.-+.|.++|+|+.-.-+
T Consensus 39 v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 39 VYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEcCc
Confidence 56788999999999998854
No 204
>PRK04140 hypothetical protein; Provisional
Probab=30.06 E-value=50 Score=29.44 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=23.9
Q ss_pred hHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcc
Q 030814 38 DARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSD 73 (171)
Q Consensus 38 d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSD 73 (171)
=++|.+++.+.=-.|.+ +.+||++|||+|---+
T Consensus 6 i~~v~~~L~~~gf~vs~---~~~~~~~~fdi~a~~~ 38 (317)
T PRK04140 6 ISEVIALLEDAGFKVSD---RCPIRPSCFDLVARRG 38 (317)
T ss_pred HHHHHHHHHHCCCEEEe---eccCCCceEEEEEecC
Confidence 35677777666667777 3688999999985544
No 205
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=29.80 E-value=87 Score=24.38 Aligned_cols=64 Identities=14% Similarity=0.297 Sum_probs=42.1
Q ss_pred hhhhhccCceEEEecCCCcch-hhhhhhhhcCCCccccchhHHHHHHHHhccccchHHHHHHHHH
Q 030814 89 DLARVASDGVLIFAGYPGQQR-AKVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPAVKKFEQA 152 (171)
Q Consensus 89 eLaRvs~dgiVif~g~pgq~~-ak~~elskfgr~ak~RsssWW~r~F~q~~leeNea~~kkfeqa 152 (171)
.+..+.++..++.||-|-+.+ ..+..+-.|..|-.......|.+.|.....+........+...
T Consensus 156 ~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~ 220 (299)
T PF00176_consen 156 ALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLREL 220 (299)
T ss_dssp HHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHH
T ss_pred cccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccccccccc
Confidence 344456899999999998876 3466677888888888888999988554333333334444433
No 206
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=29.75 E-value=37 Score=29.23 Aligned_cols=96 Identities=25% Similarity=0.298 Sum_probs=53.8
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccc----hhHHHHHHhHhcceee-----eeecCCCCCC-CCcccEEEEc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED----ADARCKSLVHKGIVRV-----ADIKFPLPYR-AKSFPLVIVS 72 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d----~d~~CksLv~kG~VRv-----adikfpLPYR-~KSFslVivS 72 (171)
.||..||||+-+-.++| +-||.|.++.- .|=.|.-.-+.-=|++ -|+..-|-=+ .--||.||+.
T Consensus 51 pVlElGPGTGV~TkaIL------~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~ 124 (194)
T COG3963 51 PVLELGPGTGVITKAIL------SRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISG 124 (194)
T ss_pred eeEEEcCCccHhHHHHH------hcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEec
Confidence 58999999999999999 45787776643 3444543333322221 1111111112 2357888876
Q ss_pred ccccccChhhhhchhhh-hhhhccCceEEEecC
Q 030814 73 DALDYLSPKYLNKTLPD-LARVASDGVLIFAGY 104 (171)
Q Consensus 73 DaLdyLsprylNkTlPe-LaRvs~dgiVif~g~ 104 (171)
==+--++++.=|+-|-+ |.|+-..|.++-..|
T Consensus 125 lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 125 LPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred cccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 55555555544444433 356666666655544
No 207
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=29.71 E-value=34 Score=24.06 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHhccccch
Q 030814 125 RSSSWWIRYFVQTSLEENE 143 (171)
Q Consensus 125 RsssWW~r~F~q~~leeNe 143 (171)
-+.+||.++..+-||.+|+
T Consensus 9 v~~~~Wk~laR~LGls~~~ 27 (79)
T cd08784 9 VPFDQHKRFFRKLGLSDNE 27 (79)
T ss_pred CCHHHHHHHHHHcCCCHHH
Confidence 3678999999999998876
No 208
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=29.51 E-value=1.4e+02 Score=24.54 Aligned_cols=121 Identities=17% Similarity=0.286 Sum_probs=61.2
Q ss_pred ccceeecCCchh--HhHhhhhccccccccccccc--ccchhH-------HHHHHhHhcceeeee-------ecCCCCC-C
Q 030814 2 HKVLHVGPDTCS--VVSTLLKEEETEAWGVEPYD--IEDADA-------RCKSLVHKGIVRVAD-------IKFPLPY-R 62 (171)
Q Consensus 2 ~kVLHvGP~tC~--vVs~llkee~teAWGVEPyd--~~d~d~-------~CksLv~kG~VRvad-------ikfpLPY-R 62 (171)
++|.-+|-|+-+ +...|. ..+-+.+.+++.+ ++.+.. ....++++|.+..++ |++.-++ -
T Consensus 4 ~~I~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA-RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHH
Confidence 688888998654 444444 4555555544432 322211 234456666643211 2232222 2
Q ss_pred CCcccEEEEcccccccChhh---hhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcCCCccccchhHHH
Q 030814 63 AKSFPLVIVSDALDYLSPKY---LNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWI 131 (171)
Q Consensus 63 ~KSFslVivSDaLdyLspry---lNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfgr~ak~RsssWW~ 131 (171)
.+..|+||.+ + |.. ....+.+|.+...++-||.+.-.|---..+++. +++|-+.-.-+|+.
T Consensus 83 ~~~aDlViea-----v-~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~--~~~~~r~ig~hf~~ 146 (291)
T PRK06035 83 LSDADFIVEA-----V-PEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATA--LERKDRFIGMHWFN 146 (291)
T ss_pred hCCCCEEEEc-----C-cCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhh--cCCcccEEEEecCC
Confidence 3566888765 1 333 345667788776655555555555433334332 34555555555554
No 209
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=29.24 E-value=2.2e+02 Score=24.96 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=56.4
Q ss_pred eecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccChhhhhc
Q 030814 6 HVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNK 85 (171)
Q Consensus 6 HvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLsprylNk 85 (171)
-+|=--++-+.++|++.+-+.-|.+....+ ..+.|-+.|+.-.-+ +-+-.. +.+|+||+|-++..-.|.....
T Consensus 6 GiggsGm~~la~~L~~~G~~v~~~D~~~~~----~~~~l~~~gi~~~~g-~~~~~~--~~~d~vV~spgi~~~~p~~~~a 78 (448)
T TIGR01082 6 GIGGIGMSGIAEILLNRGYQVSGSDIAENA----TTKRLEALGIPIYIG-HSAENL--DDADVVVVSAAIKDDNPEIVEA 78 (448)
T ss_pred EECHHHHHHHHHHHHHCCCeEEEECCCcch----HHHHHHHCcCEEeCC-CCHHHC--CCCCEEEECCCCCCCCHHHHHH
Confidence 344333444788888888888886655432 344566667644322 111112 3599999999998877765432
Q ss_pred --------hhhhhh-hhcc-CceEEEecCCC
Q 030814 86 --------TLPDLA-RVAS-DGVLIFAGYPG 106 (171)
Q Consensus 86 --------TlPeLa-Rvs~-dgiVif~g~pg 106 (171)
+-+||+ +... .-+|..||--|
T Consensus 79 ~~~~i~v~~~~el~~~~~~~~~~IaITGTnG 109 (448)
T TIGR01082 79 KERGIPVIRRAEMLAELMRFRHSIAVAGTHG 109 (448)
T ss_pred HHcCCceEeHHHHHHHHHhcCcEEEEECCCC
Confidence 234554 5542 34788888544
No 210
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=28.07 E-value=17 Score=27.50 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=28.2
Q ss_pred ccceeecCCchhHhHhhhhcc--ccccccccccccc
Q 030814 2 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYDIE 35 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee--~teAWGVEPyd~~ 35 (171)
.+|||+|=.+++-..-+++.. ....+||++-.+.
T Consensus 25 ~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~ 60 (181)
T PF01728_consen 25 FTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD 60 (181)
T ss_dssp EEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG
T ss_pred cEEEEcCCcccceeeeeeecccccceEEEEeccccc
Confidence 368999999999999998766 6899999998883
No 211
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=28.06 E-value=2.1e+02 Score=20.94 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=46.3
Q ss_pred cEEEEccc---ccccChhhhhchhhhhhhhccCceEEEecC-CCcchhh-hhhhhh------cCCCccccchhHHHHHHH
Q 030814 67 PLVIVSDA---LDYLSPKYLNKTLPDLARVASDGVLIFAGY-PGQQRAK-VAELSK------FGRPAKMRSSSWWIRYFV 135 (171)
Q Consensus 67 slVivSDa---LdyLsprylNkTlPeLaRvs~dgiVif~g~-pgq~~ak-~~elsk------fgr~ak~RsssWW~r~F~ 135 (171)
.+||+-|+ -+-.+...++.-..-|.....+-++|+... ..-.+.| ...+.| |..|-.-.-..|=.++|.
T Consensus 59 klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 138 (172)
T PF06144_consen 59 KLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAK 138 (172)
T ss_dssp EEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHH
T ss_pred eEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHH
Confidence 48999888 456666777776777777777776666665 3333333 222222 222322223345566888
Q ss_pred HhccccchHHHHHHHHHH
Q 030814 136 QTSLEENEPAVKKFEQAA 153 (171)
Q Consensus 136 q~~leeNea~~kkfeqa~ 153 (171)
+.|++=+..+...|-+..
T Consensus 139 ~~g~~i~~~a~~~L~~~~ 156 (172)
T PF06144_consen 139 KNGLKIDPDAAQYLIERV 156 (172)
T ss_dssp HTT-EE-HHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHh
Confidence 899999999988876554
No 212
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=27.53 E-value=73 Score=29.25 Aligned_cols=63 Identities=30% Similarity=0.511 Sum_probs=41.8
Q ss_pred ccceeecCCchhHhHhh-hhcccccccccccccccchhHHHHHHhHh----cce-----eeeeecCCCCCCCCcccEEEE
Q 030814 2 HKVLHVGPDTCSVVSTL-LKEEETEAWGVEPYDIEDADARCKSLVHK----GIV-----RVADIKFPLPYRAKSFPLVIV 71 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~l-lkee~teAWGVEPyd~~d~d~~CksLv~k----G~V-----RvadikfpLPYR~KSFslViv 71 (171)
+.|||||-||. |.|-+ .|-+-....+||-++|- ..|.++++. .+| +|-|| -|| ...-|. |+
T Consensus 62 K~VlDVGcGtG-ILS~F~akAGA~~V~aVe~S~ia---~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP--~eKVDi-Iv 132 (346)
T KOG1499|consen 62 KTVLDVGCGTG-ILSMFAAKAGARKVYAVEASSIA---DFARKIVKDNGLEDVITVIKGKVEDI--ELP--VEKVDI-IV 132 (346)
T ss_pred CEEEEcCCCcc-HHHHHHHHhCcceEEEEechHHH---HHHHHHHHhcCccceEEEeecceEEE--ecC--ccceeE-Ee
Confidence 56999999986 44444 45556667888888876 456777764 334 35677 677 666664 45
Q ss_pred cc
Q 030814 72 SD 73 (171)
Q Consensus 72 SD 73 (171)
|.
T Consensus 133 SE 134 (346)
T KOG1499|consen 133 SE 134 (346)
T ss_pred eh
Confidence 54
No 213
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=27.45 E-value=47 Score=21.49 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=20.1
Q ss_pred hhhhhhcCCCccccchhHHHHHHHHh
Q 030814 112 VAELSKFGRPAKMRSSSWWIRYFVQT 137 (171)
Q Consensus 112 ~~elskfgr~ak~RsssWW~r~F~q~ 137 (171)
+.++-+---|.+|-....|.|||...
T Consensus 22 l~~~~~~lVP~~~se~~FW~ryF~~~ 47 (51)
T smart00751 22 LKKLYNELVPKVLSEEEFWARYFYLL 47 (51)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 44454556799999999999999754
No 214
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=27.32 E-value=80 Score=19.33 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=17.6
Q ss_pred hHHHHHHhHhcceeeeeecCC
Q 030814 38 DARCKSLVHKGIVRVADIKFP 58 (171)
Q Consensus 38 d~~CksLv~kG~VRvadikfp 58 (171)
-+.|+.|++.|.|+|.+-...
T Consensus 16 r~~a~~~I~~g~V~VNg~~v~ 36 (48)
T PF01479_consen 16 RSEARRLIKQGRVKVNGKVVK 36 (48)
T ss_dssp HHHHHHHHHTTTEEETTEEES
T ss_pred HHHHHHhcCCCEEEECCEEEc
Confidence 567999999999999887544
No 215
>PRK05629 hypothetical protein; Validated
Probab=27.03 E-value=3.7e+02 Score=22.52 Aligned_cols=84 Identities=12% Similarity=0.193 Sum_probs=53.4
Q ss_pred cEEEEcccccccChhhhhchhhhhhhhccCceEEEecCCCcchhh-hhhhhhcCCCccc---cc---hhHHHHHHHHhcc
Q 030814 67 PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAK-VAELSKFGRPAKM---RS---SSWWIRYFVQTSL 139 (171)
Q Consensus 67 slVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak-~~elskfgr~ak~---Rs---ssWW~r~F~q~~l 139 (171)
-+|++.|+-+ ...+..+.-+.-+.....+.++||+....-.|.| +..|.|.|--+.. .. ..|=.+.|.+.|+
T Consensus 66 rlV~v~~~~~-~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~ 144 (318)
T PRK05629 66 RVIVLTNMEQ-AGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGV 144 (318)
T ss_pred eEEEEeChHh-cChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 5888888644 5555555566666666677677777643333333 2457777743322 12 4677888999999
Q ss_pred ccchHHHHHHHH
Q 030814 140 EENEPAVKKFEQ 151 (171)
Q Consensus 140 eeNea~~kkfeq 151 (171)
.=+.++..-|-.
T Consensus 145 ~i~~~A~~~L~~ 156 (318)
T PRK05629 145 RPTPDVVHALLE 156 (318)
T ss_pred CCCHHHHHHHHH
Confidence 988887765544
No 216
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=26.98 E-value=94 Score=27.12 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=59.6
Q ss_pred cceeecCCchhHhHhhhhccccccccccccc--ccchhHHHHHHhHhcc----eeeeeecCCCCC--------C------
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI----VRVADIKFPLPY--------R------ 62 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd--~~d~d~~CksLv~kG~----VRvadikfpLPY--------R------ 62 (171)
+||+++-|++.+--.|- ..-.+..|||... ++++..|.+.. |+ +..+|+.--|+- |
T Consensus 209 ~vLDl~~G~G~~sl~la-~~~~~v~~vE~~~~ai~~a~~N~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 209 DLLELYCGNGNFTLALA-RNFRRVLATEISKPSVAAAQYNIAAN---GIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred eEEEEeccccHHHHHHH-hhCCEEEEEECCHHHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 58999888887665555 4456899999654 34444444332 43 344555322321 1
Q ss_pred -CCcccEEEEcccccccChhh--hhchhhhhhhhccCceEEEecCCCcchhhhhhhhh
Q 030814 63 -AKSFPLVIVSDALDYLSPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSK 117 (171)
Q Consensus 63 -~KSFslVivSDaLdyLspry--lNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elsk 117 (171)
...||+||+ | .||. -++++..|++ .++||..+=.|...-.-++.|.+
T Consensus 285 ~~~~~D~v~l-D-----PPR~G~~~~~l~~l~~--~~~ivyvSC~p~tlarDl~~L~~ 334 (362)
T PRK05031 285 KSYNFSTIFV-D-----PPRAGLDDETLKLVQA--YERILYISCNPETLCENLETLSQ 334 (362)
T ss_pred cCCCCCEEEE-C-----CCCCCCcHHHHHHHHc--cCCEEEEEeCHHHHHHHHHHHcC
Confidence 125888875 3 3331 2456666666 47777777799665444555543
No 217
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=26.66 E-value=88 Score=24.65 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=49.2
Q ss_pred CccceeecCCchhHhH------hhhhcccccccccccccccchhHHHHHHhHhc----ceeeeeecCCCCCCCCcccEEE
Q 030814 1 MHKVLHVGPDTCSVVS------TLLKEEETEAWGVEPYDIEDADARCKSLVHKG----IVRVADIKFPLPYRAKSFPLVI 70 (171)
Q Consensus 1 m~kVLHvGP~tC~vVs------~llkee~teAWGVEPyd~~d~d~~CksLv~kG----~VRvadikfpLPYR~KSFslVi 70 (171)
|-.++=.|.|-=+|++ +.+..++-.+-+.+-|..+ +|=| -||++|-....|+...+.|+++
T Consensus 1 ~~~i~i~G~GGqGv~tag~iLa~a~~~~G~~v~~~~~ygs~---------~RGG~~~~~vRis~~~i~~~~~~~~~Dilv 71 (185)
T PRK14029 1 MIEIRFHGRGGQGAVTAANILAEAAFLEGKYVQAFPFFGVE---------RRGAPVTAFTRIDEKPIRIKTQIYEPDVVV 71 (185)
T ss_pred CEEEEEEEECcchHHHHHHHHHHHHHhcCCeEEEeeccChh---------hcCCcEEEEEEEcCCcccCccccCCCCEEE
Confidence 4455556665544443 3334566666666666655 2323 4677775555566677888888
Q ss_pred EcccccccChhhhhch--hhhhhhhccCceEEEec
Q 030814 71 VSDALDYLSPKYLNKT--LPDLARVASDGVLIFAG 103 (171)
Q Consensus 71 vSDaLdyLsprylNkT--lPeLaRvs~dgiVif~g 103 (171)
+-|. +.+++. ++ ++..+|+||.-.
T Consensus 72 a~~~------~~~~~~~~~~---~l~~~g~vi~n~ 97 (185)
T PRK14029 72 VLDP------SLLDTVDVTA---GLKDGGIVIVNT 97 (185)
T ss_pred EcCH------HHhhhchHhh---CcCCCcEEEEEC
Confidence 8765 223221 33 356778877765
No 218
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=26.57 E-value=45 Score=28.61 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=26.7
Q ss_pred ccceeecCCchhHhHhhhhccccccccccc--ccccchhHHHHH
Q 030814 2 HKVLHVGPDTCSVVSTLLKEEETEAWGVEP--YDIEDADARCKS 43 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llkee~teAWGVEP--yd~~d~d~~Cks 43 (171)
+.|||.|-|||..-=...-.+-....|||+ --++-+.+||+.
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh
Confidence 359999999996543333245566677664 344556667776
No 219
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=26.49 E-value=89 Score=25.70 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=47.8
Q ss_pred cceeecCCchhHhHhhhhccccc-cccccccccc-chhHHHHHHhHh---------cceeeeeecC-CCCCCC---Cccc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETE-AWGVEPYDIE-DADARCKSLVHK---------GIVRVADIKF-PLPYRA---KSFP 67 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~te-AWGVEPyd~~-d~d~~CksLv~k---------G~VRvadikf-pLPYR~---KSFs 67 (171)
..+|+|-|.+.+|-..--.-+-+ ++|||.-+-- +....++...++ +-|.+....| ..+... ++=+
T Consensus 45 vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~Ad 124 (205)
T PF08123_consen 45 VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDAD 124 (205)
T ss_dssp EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-S
T ss_pred EEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcCCC
Confidence 46899999988875433334455 9999976532 122222222222 2222222111 112211 2347
Q ss_pred EEEEcccccccChhhhhchhhhhhhhccCceEEEec
Q 030814 68 LVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 68 lVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g 103 (171)
+|++-+.+ =+.-||.-|-+++.--++|-.|.+.
T Consensus 125 vVf~Nn~~---F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 125 VVFVNNTC---FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp EEEE--TT---T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred EEEEeccc---cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 88887764 2445888888777777888777766
No 220
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=25.99 E-value=89 Score=26.42 Aligned_cols=88 Identities=14% Similarity=0.224 Sum_probs=50.7
Q ss_pred cceeecCCchhHhHh--hh----hcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcc--c
Q 030814 3 KVLHVGPDTCSVVST--LL----KEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSD--A 74 (171)
Q Consensus 3 kVLHvGP~tC~vVs~--ll----kee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSD--a 74 (171)
.++=.|.|-=++|+. +| ..++-.+-+.+-|..+---+... --||++|-...-||.....|+|++-| +
T Consensus 4 ei~~~G~GGqG~~ta~~ila~a~~~~G~~v~~~~~ygs~~RGg~~~-----~~vRis~~pi~~~~~~~~~D~lv~~~~~~ 78 (312)
T PRK14028 4 ETVWLGRGGQGIVTATYIIANAAVIDGFYAIANPEFGAERRGAPVK-----AFLTISKNPIEDQEPVKTPDVAVIFDDKL 78 (312)
T ss_pred EEEEeccCCCcHHHHHHHHHHHHHhcCceEEeccccCchhcCCceE-----EEEEecCcccccccccCCCCEEEEeChhh
Confidence 455567766565543 33 33566666667777662111111 14677775555567778899999987 4
Q ss_pred ccccChhhhhchhhhhhhhccCceEEEec
Q 030814 75 LDYLSPKYLNKTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 75 LdyLsprylNkTlPeLaRvs~dgiVif~g 103 (171)
++.+. | =+.++..+|+||.-.
T Consensus 79 ~~~~~--~------~~~~l~~gg~vi~n~ 99 (312)
T PRK14028 79 IDPMR--F------AIDAVKPGGYVILNT 99 (312)
T ss_pred hcccc--H------HhcCcCCCeEEEEeC
Confidence 44211 1 033566778777765
No 221
>PF01232 Mannitol_dh: Mannitol dehydrogenase Rossmann domain; InterPro: IPR013131 Mannitol-1-phosphate 5-dehydrogenase catalyses the NAD-dependent reduction of mannitol-1-phosphate to fructose-6-phosphate [] as part of the phosphoenolpyruvate-dependent phosphotransferase system (PTS). The PTS facilitates the vectorial translocation of metabolisable carbohydrates to form the corresponding sugar phosphates, which are then converted to glycolytic intermediates []. Mannitol 2-dehydrogenase catalyses the NAD-dependent reduction of mannitol to fructose []. Several dehydrogenases have been shown [] to be evolutionary related, including mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) (gene mtlD), mannitol 2-dehydrogenase (1.1.1.67 from EC) (gene mtlK); mannonate oxidoreductase (1.1.1.57 from EC) (fructuronate reductase) (gene uxuB); Escherichia coli hypothetical proteins ydfI and yeiQ; and yeast hypothetical protein YEL070w. This domain has a Rossmann-type fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1M2W_A 1LJ8_A 3H2Z_A.
Probab=25.98 E-value=2.4e+02 Score=21.49 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=56.8
Q ss_pred cceeecCCch--h---HhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccc
Q 030814 3 KVLHVGPDTC--S---VVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 77 (171)
Q Consensus 3 kVLHvGP~tC--~---vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdy 77 (171)
++||.|.|+= + .+..|+.+ +..-|||---+..+.+. ...|-+.+-..+-=+. + ..+-...++..+-++
T Consensus 2 ~ivhfG~Gnf~Rgh~a~i~~ll~~-~~~~~gi~~V~~~~~~~-~~~L~~qd~~y~~~~~-~----~~~~~~~~I~~i~~~ 74 (151)
T PF01232_consen 2 KIVHFGAGNFHRGHQAFIDELLNQ-GGFDWGIVDVNPRSVDA-IDALNEQDGLYTLVTR-G----EGVEEVRVITSISAV 74 (151)
T ss_dssp EEEEES-SHHHHHTHHCHHHHHCC-TTTCEEEEECEHCCCHH-HHHHHCCTCEEEEEES-S----SSSEEEEEEESEEEE
T ss_pred cEEEECCcHHHHHHHHHHHHHHhc-cCCceEEEEEEecCchH-HHHhhcCCCeEEEEEe-c----CCCcEEEEEeEEeee
Confidence 6899999973 3 67888855 77789987777776666 7888777665553332 2 555666666666666
Q ss_pred cChhh-hhchhhhhhhhccCceEEEecCCC
Q 030814 78 LSPKY-LNKTLPDLARVASDGVLIFAGYPG 106 (171)
Q Consensus 78 Lspry-lNkTlPeLaRvs~dgiVif~g~pg 106 (171)
+++.- .++.+--++.=+.+-|+.-++-.|
T Consensus 75 ~~~~~d~~~l~~~~~~p~~~iIt~tvTE~G 104 (151)
T PF01232_consen 75 LSADEDWEALLELAADPSLDIITSTVTEKG 104 (151)
T ss_dssp ECCCCHHHHHHHHHTTTT-SEEEE---CTT
T ss_pred cccccCHHHHHHHHhCCCccEEEEeccccc
Confidence 65531 222222222223445555555655
No 222
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=25.78 E-value=16 Score=25.49 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=25.8
Q ss_pred hhchhhhhhhhccCceEEEecCCCcchhhh
Q 030814 83 LNKTLPDLARVASDGVLIFAGYPGQQRAKV 112 (171)
Q Consensus 83 lNkTlPeLaRvs~dgiVif~g~pgq~~ak~ 112 (171)
||+..++-+++-.+|..+|.|.+|..+.+.
T Consensus 37 L~~~~~~~v~l~v~g~~~~~g~lg~~~~~~ 66 (77)
T TIGR02480 37 LDKLAGEPLDILVNGRLIARGEVVVVEDKF 66 (77)
T ss_pred cCCCCCCcEEEEECCEEEEEEEEEEECCEE
Confidence 578888889999999999999999887553
No 223
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=25.59 E-value=1.6e+02 Score=17.52 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=24.4
Q ss_pred hhHHHHHHhHhcceeeeeecC-CCCCCCCcccEEEE
Q 030814 37 ADARCKSLVHKGIVRVADIKF-PLPYRAKSFPLVIV 71 (171)
Q Consensus 37 ~d~~CksLv~kG~VRvadikf-pLPYR~KSFslViv 71 (171)
..+.++.++++|.|++.+-.. ..-++-+..+.|.+
T Consensus 15 sr~~~~~~i~~g~V~vn~~~~~~~~~~v~~~d~i~i 50 (70)
T cd00165 15 SRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEV 50 (70)
T ss_pred CHHHHHHHHHcCCEEECCEEccCCccCcCCCCEEEE
Confidence 467889999999999998765 44444444454443
No 224
>PRK03980 flap endonuclease-1; Provisional
Probab=25.29 E-value=53 Score=28.49 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=24.7
Q ss_pred eecCCchhHhHhhhhccccccccccccccc-chhHHHHHHhHhcce
Q 030814 6 HVGPDTCSVVSTLLKEEETEAWGVEPYDIE-DADARCKSLVHKGIV 50 (171)
Q Consensus 6 HvGP~tC~vVs~llkee~teAWGVEPyd~~-d~d~~CksLv~kG~V 50 (171)
++-|+...-+..||+ +.||+-.+.. .|++.|-.|.+.|+|
T Consensus 79 ~vt~~~~~~~k~lL~-----~~GIp~i~AP~EAEAq~A~L~~~g~v 119 (292)
T PRK03980 79 RLTDEIVEDSKKLLD-----LMGIPYVQAPSEGEAQAAYMAKKGDA 119 (292)
T ss_pred cCCHHHHHHHHHHHH-----HCCCCEEecCchHHHHHHHHHHCCCe
Confidence 344555555666773 4455433332 256779999999987
No 225
>PRK10536 hypothetical protein; Provisional
Probab=25.06 E-value=83 Score=27.57 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=45.3
Q ss_pred HhcceeeeeecCCCCCCCCcc--cEEEEcccccccChhhhhchhhhhhhhccCceEEEecCCCcch
Q 030814 46 HKGIVRVADIKFPLPYRAKSF--PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQR 109 (171)
Q Consensus 46 ~kG~VRvadikfpLPYR~KSF--slVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ 109 (171)
..|.|++.++.| -|-.+| ++||+-. -.-++|.++...| .|+..+.-+|++|-|.|--
T Consensus 158 ~~~~Iei~~l~y---mRGrtl~~~~vIvDE-aqn~~~~~~k~~l---tR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 158 EIGKVEIAPFAY---MRGRTFENAVVILDE-AQNVTAAQMKMFL---TRLGENVTVIVNGDITQCD 216 (262)
T ss_pred ccCcEEEecHHH---hcCCcccCCEEEEec-hhcCCHHHHHHHH---hhcCCCCEEEEeCChhhcc
Confidence 469999987755 366777 6677644 4778999988876 8999999999999999873
No 226
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=25.00 E-value=1.3e+02 Score=27.74 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=59.7
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHHhHhcceee---eeecCCCCCCCCcccEEEEcccccccC
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRV---ADIKFPLPYRAKSFPLVIVSDALDYLS 79 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRv---adikfpLPYR~KSFslVivSDaLdyLs 79 (171)
.+||+|-.+++--..|++. +....+|+.-+|. .+|...|.|.. .++++. | +.+.+|+ +|+|+.++
T Consensus 214 ~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l~------~~L~~~~~V~h~~~d~fr~~-p-~~~~vDw-vVcDmve~-- 281 (357)
T PRK11760 214 RAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPMA------QSLMDTGQVEHLRADGFKFR-P-PRKNVDW-LVCDMVEK-- 281 (357)
T ss_pred EEEEeCCCCcHHHHHHHHc-CCEEEEEechhcC------HhhhCCCCEEEEeccCcccC-C-CCCCCCE-EEEecccC--
Confidence 6899999999999999855 5589999877776 34677777754 344442 2 2567886 57899876
Q ss_pred hhhhhchhhhhhh-hccCceEEEecCCCcchh
Q 030814 80 PKYLNKTLPDLAR-VASDGVLIFAGYPGQQRA 110 (171)
Q Consensus 80 prylNkTlPeLaR-vs~dgiVif~g~pgq~~a 110 (171)
|.-+=..+-+... --....|.-.-+|+..|-
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~ 313 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNLKLPMKKRY 313 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEEEcCCCCCH
Confidence 4433233333222 112233333347777653
No 227
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=24.62 E-value=3.7e+02 Score=21.61 Aligned_cols=88 Identities=25% Similarity=0.364 Sum_probs=47.0
Q ss_pred cceeecCCchhH-hHhhhhcccccccccccccccchhHHHHHHhHhcceeee----eecCCCCC-----C-CCcccEEEE
Q 030814 3 KVLHVGPDTCSV-VSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVA----DIKFPLPY-----R-AKSFPLVIV 71 (171)
Q Consensus 3 kVLHvGP~tC~v-Vs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRva----dikfpLPY-----R-~KSFslViv 71 (171)
+|+=+|.|..+. ....|.+.+.+...+.. +.+...+-+.|+ ++. +...+.+. . .+.+|+||+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r------~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR------PKRAKALRERGL-VIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec------HHHHHHHHhCCe-EEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 477788887654 55566555555444432 344555556664 332 22222211 1 266787776
Q ss_pred cccccccChhhhhchhhhhhhh-ccCceEEEe
Q 030814 72 SDALDYLSPKYLNKTLPDLARV-ASDGVLIFA 102 (171)
Q Consensus 72 SDaLdyLsprylNkTlPeLaRv-s~dgiVif~ 102 (171)
+ ..+.+++.++.+|+.. ..+.+||+.
T Consensus 75 a-----vk~~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 75 A-----VKAYQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred E-----ecccCHHHHHHHHHhhcCCCCEEEEe
Confidence 5 2233566677777653 445566655
No 228
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=24.52 E-value=60 Score=20.80 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=29.1
Q ss_pred eEEEecCCCcchhhhhhhhhcCCCccccchhHHHHHHHHhccccchHHHHHHHHHHhh
Q 030814 98 VLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEPAVKKFEQAASK 155 (171)
Q Consensus 98 iVif~g~pgq~~ak~~elskfgr~ak~RsssWW~r~F~q~~leeNea~~kkfeqa~~k 155 (171)
+|.|+|+++.+|..+..+-...-.. .+..+ .+ ..|=|=-++...+|++.|...
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg~--~~~~l-t~--~~THLI~~~~~~~K~~~A~~~ 54 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGGK--YSKDL-TK--KTTHLICSSPEGKKYRKAKEW 54 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT-E--EESSS-ST--T-SEEEEES--HHHHHHHHHC
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCE--Eeccc-cC--CceEEEEeCCCcHHHHHHHHC
Confidence 5789999999999988875543221 00111 11 334444567778888887653
No 229
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=24.35 E-value=30 Score=30.34 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=22.3
Q ss_pred cChhhhhchhhhhhhhccCceEEEec--CCCcc
Q 030814 78 LSPKYLNKTLPDLARVASDGVLIFAG--YPGQQ 108 (171)
Q Consensus 78 LsprylNkTlPeLaRvs~dgiVif~g--~pgq~ 108 (171)
+.|+|.|..+.||+||++.-=-...+ -|+|-
T Consensus 41 ~d~kYaaa~~~D~~rVasrln~~a~~v~~Pe~I 73 (227)
T PF12060_consen 41 GDPKYAAAVWSDMARVASRLNFFACEVDTPEQI 73 (227)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 57999999999999999764322222 45554
No 230
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=24.32 E-value=65 Score=21.04 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=26.2
Q ss_pred ccccchhHHHHHHhHhcceeeeeecCCCCCCCCccc
Q 030814 32 YDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFP 67 (171)
Q Consensus 32 yd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFs 67 (171)
+.++|+++-++.|...|+--+.++ ..-||..++|-
T Consensus 62 ~~v~dv~~~~~~l~~~G~~~~~~~-~~~~~g~~~~~ 96 (108)
T PF12681_consen 62 FEVEDVDALYERLKELGAEIVTEP-RDDPWGQRSFY 96 (108)
T ss_dssp EEESHHHHHHHHHHHTTSEEEEEE-EEETTSEEEEE
T ss_pred EEEcCHHHHHHHHHHCCCeEeeCC-EEcCCCeEEEE
Confidence 355899999999999997667777 44667655553
No 231
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.04 E-value=54 Score=25.57 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=29.2
Q ss_pred ChhhhhchhhhhhhhccCceEEEecCCCcchhhh
Q 030814 79 SPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKV 112 (171)
Q Consensus 79 sprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~ 112 (171)
++....+.+-++....+|-|++-.|.|.|++=-.
T Consensus 86 ~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~ 119 (172)
T PF03808_consen 86 DEEEEEAIINRINASGPDIVFVGLGAPKQERWIA 119 (172)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHH
Confidence 6778888888999999999999999999995433
No 232
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.96 E-value=1.2e+02 Score=23.08 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=20.1
Q ss_pred ChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcCCC
Q 030814 79 SPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRP 121 (171)
Q Consensus 79 sprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfgr~ 121 (171)
+|......+-.+..-.-||||+..+.+.....-+.++.+.|-|
T Consensus 40 ~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ip 82 (273)
T cd06305 40 DDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIP 82 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCC
Confidence 3433334444444445566666554444333334455555544
No 233
>PRK06033 hypothetical protein; Validated
Probab=23.93 E-value=17 Score=26.33 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=26.2
Q ss_pred hhchhhhhhhhccCceEEEecCCCcchhhh
Q 030814 83 LNKTLPDLARVASDGVLIFAGYPGQQRAKV 112 (171)
Q Consensus 83 lNkTlPeLaRvs~dgiVif~g~pgq~~ak~ 112 (171)
||+..+|-+.+-.+|.-+|.|-||..+.+.
T Consensus 36 L~~~~~~~v~v~V~~~~~f~g~~G~~~~~~ 65 (83)
T PRK06033 36 LDATEADEVWILANNHPIARGEVLIDRNRI 65 (83)
T ss_pred eCCCCCCcEEEEECCEEEEEEEEEEECCEE
Confidence 688888999999999999999999887653
No 234
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.18 E-value=61 Score=31.87 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=57.2
Q ss_pred CCCcccEEEEcccccccChhhhhchhhhhhhhccCceEEEec--CCCcchhhhhhhhhcCCCccccchhHHHHHHHHhcc
Q 030814 62 RAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG--YPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSL 139 (171)
Q Consensus 62 R~KSFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g--~pgq~~ak~~elskfgr~ak~RsssWW~r~F~q~~l 139 (171)
|..+||+|++--|=.--.-.-|=..|.-|.++..-..|||.| +-|. ..+.++.||-++..-++.+--+..|.=|-.
T Consensus 463 ~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~--dsv~q~~~fn~al~~~~~~r~id~~~ltk~ 540 (587)
T KOG0781|consen 463 RNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN--DSVDQLKKFNRALADHSTPRLIDGILLTKF 540 (587)
T ss_pred HhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc--HHHHHHHHHHHHHhcCCCccccceEEEEec
Confidence 678999999866665555666778889999999999999999 5665 478999999887766664444444444433
Q ss_pred c
Q 030814 140 E 140 (171)
Q Consensus 140 e 140 (171)
+
T Consensus 541 d 541 (587)
T KOG0781|consen 541 D 541 (587)
T ss_pred c
Confidence 3
No 235
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=23.13 E-value=51 Score=21.57 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=11.2
Q ss_pred cchhHHHHHHHHhcc
Q 030814 125 RSSSWWIRYFVQTSL 139 (171)
Q Consensus 125 RsssWW~r~F~q~~l 139 (171)
|---=|...|+|+|+
T Consensus 20 rv~kAWRNiFvqagI 34 (34)
T PF13137_consen 20 RVDKAWRNIFVQAGI 34 (34)
T ss_pred HHHHHHHHHHHHccC
Confidence 334459999999985
No 236
>PRK04011 peptide chain release factor 1; Provisional
Probab=22.69 E-value=26 Score=31.68 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=39.2
Q ss_pred cccccccChhh---------hhch---------hhhh---hhhccCceEEEecC-----CCcchhhhhhhhhcCCCcccc
Q 030814 72 SDALDYLSPKY---------LNKT---------LPDL---ARVASDGVLIFAGY-----PGQQRAKVAELSKFGRPAKMR 125 (171)
Q Consensus 72 SDaLdyLspry---------lNkT---------lPeL---aRvs~dgiVif~g~-----pgq~~ak~~elskfgr~ak~R 125 (171)
||+..+|.-+| +|+. +-.| -++-..|+|||+|. ||...----.+. -++|+..-
T Consensus 41 ~~~~~~l~~e~~~a~nik~~~~r~~v~~ai~~~~~rl~~~~~~p~nGl~~f~g~~~~~~~~~~~~~t~~i~-p~~~i~~~ 119 (411)
T PRK04011 41 SDVVNQLRQEYSQASNIKSKTTRKNVQSALESIIQRLKLYKKPPENGLVIFCGAVPIGGPGTEDMETYVIE-PPEPVPTF 119 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCeEEEEEeecccCCCCCceEEEEEEc-CCCccEEE
Confidence 57777777777 4432 2222 23348999999996 455433233343 56676665
Q ss_pred chhHHHHHHHH
Q 030814 126 SSSWWIRYFVQ 136 (171)
Q Consensus 126 sssWW~r~F~q 136 (171)
--.||..|+..
T Consensus 120 ~y~~d~~f~le 130 (411)
T PRK04011 120 FYRCDSEFHTE 130 (411)
T ss_pred EecCCcHHHHH
Confidence 56699988864
No 237
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=22.68 E-value=2.7e+02 Score=26.66 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=56.3
Q ss_pred ccEEEEcccccccChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcCCCccccc------hhHHHHHHHHhcc
Q 030814 66 FPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRS------SSWWIRYFVQTSL 139 (171)
Q Consensus 66 FslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfgr~ak~Rs------ssWW~r~F~q~~l 139 (171)
+-+||+-+ .|.|+....|.-|--|-.-..+.++||+. .+.+.....+.+-+....++. ..|-.+.+...|+
T Consensus 133 ~KVvIIDE-ad~Ls~~a~naLLKtLEePp~~~~fIl~t--te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi 209 (598)
T PRK09111 133 YKVYIIDE-VHMLSTAAFNALLKTLEEPPPHVKFIFAT--TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV 209 (598)
T ss_pred cEEEEEEC-hHhCCHHHHHHHHHHHHhCCCCeEEEEEe--CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 45666655 69999999999888888888898888886 222223334444444444443 4577777877888
Q ss_pred ccchHHHHHHHHH
Q 030814 140 EENEPAVKKFEQA 152 (171)
Q Consensus 140 eeNea~~kkfeqa 152 (171)
+-.+++...+-++
T Consensus 210 ~i~~eAl~lIa~~ 222 (598)
T PRK09111 210 EVEDEALALIARA 222 (598)
T ss_pred CCCHHHHHHHHHH
Confidence 7777766555443
No 238
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=22.57 E-value=84 Score=27.16 Aligned_cols=37 Identities=30% Similarity=0.570 Sum_probs=31.1
Q ss_pred HhcceeeeeecCCCCCCCC-cccEEEEcccccccC-hhh
Q 030814 46 HKGIVRVADIKFPLPYRAK-SFPLVIVSDALDYLS-PKY 82 (171)
Q Consensus 46 ~kG~VRvadikfpLPYR~K-SFslVivSDaLdyLs-pry 82 (171)
..||.++.=.++|||.... +|++|..|=+|.|.. |++
T Consensus 84 ~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~ 122 (219)
T PF11968_consen 84 HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQ 122 (219)
T ss_pred CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHH
Confidence 5688888888999997765 899999999999987 544
No 239
>PRK11325 scaffold protein; Provisional
Probab=22.35 E-value=19 Score=27.30 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=32.6
Q ss_pred ccccChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhh
Q 030814 75 LDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL 115 (171)
Q Consensus 75 LdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~el 115 (171)
-+.++-.-.+||+.|+..++.+.|.-+.|.| ..|.+-+.|
T Consensus 70 as~~~e~~~Gktl~ea~~i~~~~i~~~lg~p-~~r~~CA~l 109 (127)
T PRK11325 70 SSLVTEWVKGKTLDEALAIKNTDIAEELALP-PVKIHCSIL 109 (127)
T ss_pred HHHHHHHHcCCCHHHHHhcCHHHHHHHcCCC-cccchHHHH
Confidence 4566677789999999999999888888888 666777777
No 240
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=22.22 E-value=49 Score=29.59 Aligned_cols=13 Identities=38% Similarity=1.083 Sum_probs=10.9
Q ss_pred eEEEecCCCcchh
Q 030814 98 VLIFAGYPGQQRA 110 (171)
Q Consensus 98 iVif~g~pgq~~a 110 (171)
+||+|||||--+.
T Consensus 3 LiIlTGyPgsGKT 15 (261)
T COG4088 3 LIILTGYPGSGKT 15 (261)
T ss_pred eEEEecCCCCCch
Confidence 7999999997654
No 241
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=22.19 E-value=79 Score=29.03 Aligned_cols=81 Identities=26% Similarity=0.341 Sum_probs=40.1
Q ss_pred cceeecCCchhHhHhhhhcccccccccccccccchhHHHHHH---hHh----cceee--eee-cCCCCCCCCcccEEEEc
Q 030814 3 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSL---VHK----GIVRV--ADI-KFPLPYRAKSFPLVIVS 72 (171)
Q Consensus 3 kVLHvGP~tC~vVs~llkee~teAWGVEPyd~~d~d~~CksL---v~k----G~VRv--adi-kfpLPYR~KSFslVivS 72 (171)
.||+||.||+-+|..-++-.....=-+.-|-+|--..-+..| |++ +.|.| +|+ .+.+|- ..| ||||
T Consensus 189 vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe---kvD-IIVS 264 (448)
T PF05185_consen 189 VVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE---KVD-IIVS 264 (448)
T ss_dssp EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS----EE-EEEE
T ss_pred EEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC---cee-EEEE
Confidence 499999999999988776653222123444444211222222 232 45554 222 134444 334 6788
Q ss_pred ccccccChhhhhchhhhh
Q 030814 73 DALDYLSPKYLNKTLPDL 90 (171)
Q Consensus 73 DaLdyLsprylNkTlPeL 90 (171)
-.|.++- .|--+||.
T Consensus 265 ElLGsfg---~nEl~pE~ 279 (448)
T PF05185_consen 265 ELLGSFG---DNELSPEC 279 (448)
T ss_dssp ---BTTB---TTTSHHHH
T ss_pred eccCCcc---ccccCHHH
Confidence 8887644 45566664
No 242
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=21.77 E-value=1.6e+02 Score=18.83 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=10.0
Q ss_pred chhhhhhhhccCceEEEec
Q 030814 85 KTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 85 kTlPeLaRvs~dgiVif~g 103 (171)
+.+-+...-.....||++|
T Consensus 21 ~~~~~~~~~~~~d~ii~~G 39 (200)
T PF00149_consen 21 RKLDEIAAENKPDFIIFLG 39 (200)
T ss_dssp HHHHHHHHHTTTSEEEEES
T ss_pred HHHHHHhccCCCCEEEeec
Confidence 3344444444555666677
No 243
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.50 E-value=89 Score=21.90 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=9.4
Q ss_pred ceeecCCchhHhHhhh
Q 030814 4 VLHVGPDTCSVVSTLL 19 (171)
Q Consensus 4 VLHvGP~tC~vVs~ll 19 (171)
|.=+|-|++..+...+
T Consensus 3 I~i~G~G~S~~~a~~~ 18 (128)
T cd05014 3 VVVTGVGKSGHIARKI 18 (128)
T ss_pred EEEEeCcHhHHHHHHH
Confidence 4455666666665554
No 244
>PF14217 DUF4327: Domain of unknown function (DUF4327)
Probab=21.38 E-value=55 Score=23.91 Aligned_cols=20 Identities=35% Similarity=0.699 Sum_probs=17.8
Q ss_pred ccccchhHHHHHHhHhccee
Q 030814 32 YDIEDADARCKSLVHKGIVR 51 (171)
Q Consensus 32 yd~~d~d~~CksLv~kG~VR 51 (171)
|.|+.......+||++|+|.
T Consensus 2 ysi~~iq~ear~LV~~g~v~ 21 (68)
T PF14217_consen 2 YSIDKIQDEARSLVESGVVS 21 (68)
T ss_pred CcHHHHHHHHHHHHHcCCCC
Confidence 67888889999999999985
No 245
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.33 E-value=1.2e+02 Score=21.00 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=11.3
Q ss_pred hhhhccCceEEEecCCCcchh
Q 030814 90 LARVASDGVLIFAGYPGQQRA 110 (171)
Q Consensus 90 LaRvs~dgiVif~g~pgq~~a 110 (171)
+..+.++.+||+++++|..+.
T Consensus 48 ~~~~~~~d~vi~is~sg~~~~ 68 (131)
T PF01380_consen 48 LENLDPDDLVIIISYSGETRE 68 (131)
T ss_dssp GGGCSTTEEEEEEESSSTTHH
T ss_pred cccccccceeEeeeccccchh
Confidence 444555555555556555543
No 246
>smart00363 S4 S4 RNA-binding domain.
Probab=21.32 E-value=1.8e+02 Score=16.77 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=17.6
Q ss_pred hhHHHHHHhHhcceeeeeecC
Q 030814 37 ADARCKSLVHKGIVRVADIKF 57 (171)
Q Consensus 37 ~d~~CksLv~kG~VRvadikf 57 (171)
..+.++.+++.|.|+|.+-..
T Consensus 15 s~~~~~~~i~~g~i~vng~~~ 35 (60)
T smart00363 15 SRSQARKLIEQGRVKVNGKKV 35 (60)
T ss_pred CHHHHHHHHHcCCEEECCEEe
Confidence 367789999999999998754
No 247
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=20.82 E-value=2.1e+02 Score=24.09 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=30.4
Q ss_pred cEEEEcccccccChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcCCCcccc-chhHHHHHHHH
Q 030814 67 PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMR-SSSWWIRYFVQ 136 (171)
Q Consensus 67 slVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfgr~ak~R-sssWW~r~F~q 136 (171)
-+||.||-++|.. +.++. ..+.++|++. +..-.-..-+|.----+=.. +=|||..|+.+
T Consensus 208 ~f~ifSDD~~w~k-----~~l~~-----~~~~~~~~~~-~~~~~Dl~lms~C~~~IisnSTFswW~a~L~~ 267 (298)
T PF01531_consen 208 KFFIFSDDIEWCK-----ENLKF-----SNGDVYFSGN-NSPYEDLYLMSQCKHFIISNSTFSWWAAYLSK 267 (298)
T ss_pred EEEEEcCCHHHHH-----HHHhh-----cCCcEEEECC-CCHHHHHHHHHhCCcEEECCChHHHHHHHHCC
Confidence 5788999766653 22322 2345666665 22222333333332222222 33899999854
No 248
>TIGR01397 fliM_switch flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself.
Probab=20.80 E-value=24 Score=29.76 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=26.0
Q ss_pred hhchhhhhhhhccCceEEEecCCCcchhhh
Q 030814 83 LNKTLPDLARVASDGVLIFAGYPGQQRAKV 112 (171)
Q Consensus 83 lNkTlPeLaRvs~dgiVif~g~pgq~~ak~ 112 (171)
||++.++-++|..+|.-+|.|.||+.+.+.
T Consensus 282 L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~ 311 (320)
T TIGR01397 282 LNTDMPEEVSLRVGGRPKFRAQPGVRGGKL 311 (320)
T ss_pred eCCCCCCcEEEEECCEEEEEEEEEEECCEE
Confidence 578888889999999999999999987654
No 249
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=20.79 E-value=1.3e+02 Score=23.67 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=42.9
Q ss_pred EEEEcccccccChhhh-hchhhhhhhhccCceEEEecCCCcchhhhhhhh--------hcCCCccccchhHHHHHHH
Q 030814 68 LVIVSDALDYLSPKYL-NKTLPDLARVASDGVLIFAGYPGQQRAKVAELS--------KFGRPAKMRSSSWWIRYFV 135 (171)
Q Consensus 68 lVivSDaLdyLspryl-NkTlPeLaRvs~dgiVif~g~pgq~~ak~~els--------kfgr~ak~RsssWW~r~F~ 135 (171)
+||++|..-- ..++ +...+-+-+++.+-++.++|..+-.+.-...+. ++|++...+.-..|.+...
T Consensus 39 VvlaaD~~~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~ 113 (209)
T cd01911 39 VVLAVEKKVT--SKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLA 113 (209)
T ss_pred EEEEEEecCC--ccccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5777876643 2333 356777888999999999998876544332221 4677777766666666544
No 250
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=20.72 E-value=3.2e+02 Score=24.20 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=56.6
Q ss_pred ccceeecCCchhHhHhhhh--ccccccccccccc--ccchhHHHHHHhHhccee-----eeeecCCCCCCCCcccEEEEc
Q 030814 2 HKVLHVGPDTCSVVSTLLK--EEETEAWGVEPYD--IEDADARCKSLVHKGIVR-----VADIKFPLPYRAKSFPLVIVS 72 (171)
Q Consensus 2 ~kVLHvGP~tC~vVs~llk--ee~teAWGVEPyd--~~d~d~~CksLv~kG~VR-----vadikfpLPYR~KSFslVivS 72 (171)
.+||.+|.|+...-..|+. -..++.|.+|--+ ++-|-+|-+.. |+-. ..||+=.. =.+.||.|+
T Consensus 96 ~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~---~l~d~v~~~~~Dv~~~~--~~~~vDav~-- 168 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF---GLGDRVTLKLGDVREGI--DEEDVDAVF-- 168 (256)
T ss_pred CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh---ccccceEEEeccccccc--cccccCEEE--
Confidence 3699999999998888873 2345666655321 12233343332 5433 33432111 112677765
Q ss_pred ccccccChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcC
Q 030814 73 DALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFG 119 (171)
Q Consensus 73 DaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfg 119 (171)
||-..|--.=..+-++..-. -.+++|.-+=-|.+.-+..|.++|
T Consensus 169 --LDmp~PW~~le~~~~~Lkpg-g~~~~y~P~veQv~kt~~~l~~~g 212 (256)
T COG2519 169 --LDLPDPWNVLEHVSDALKPG-GVVVVYSPTVEQVEKTVEALRERG 212 (256)
T ss_pred --EcCCChHHHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHHHHhcC
Confidence 45444533222333333333 445666667777766666665543
No 251
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=20.71 E-value=33 Score=32.97 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=42.2
Q ss_pred EEEEcccccccChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcCCCccccchhHHHHHHHHhccccchH
Q 030814 68 LVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEP 144 (171)
Q Consensus 68 lVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfgr~ak~RsssWW~r~F~q~~leeNea 144 (171)
-+|-+|+|=|....|-++.+=|++-++..-.|.. | + |-.+-+-+|+||.+.|.++|-+..+-
T Consensus 361 RLiLADaL~Ya~~~~~~~~I~d~aTLTGa~~ial-G----------~----~~~gi~Tns~~l~k~~~~Ag~~tGD~ 422 (513)
T KOG2597|consen 361 RLVLADALLYAQETLKPKLIVDIATLTGAMRIAL-G----------E----GAAGIFTNSEELWKRLQKAGIETGDR 422 (513)
T ss_pred eEEeccHHHHhhhhcCCCEEEEeccchhhhHhhc-C----------c----cceEEEcChHHHHHHHHHHHHhhCCc
Confidence 4678899998887777777666666654322221 1 1 11233788899999999999988764
No 252
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=20.69 E-value=50 Score=28.79 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=17.4
Q ss_pred chhhhhhhhccCceEEEec
Q 030814 85 KTLPDLARVASDGVLIFAG 103 (171)
Q Consensus 85 kTlPeLaRvs~dgiVif~g 103 (171)
-|+|||+|...++++|.-|
T Consensus 54 iTV~El~~~NP~~LliSPG 72 (223)
T KOG0026|consen 54 LTVEELKRKNPRGLLISPG 72 (223)
T ss_pred ccHHHHhhcCCCeEEecCC
Confidence 3899999999999999877
No 253
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=20.63 E-value=1.2e+02 Score=27.57 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=52.1
Q ss_pred CcccEEEEcccccccChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcCCCccccc------hhHHHHHHHHh
Q 030814 64 KSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRS------SSWWIRYFVQT 137 (171)
Q Consensus 64 KSFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfgr~ak~Rs------ssWW~r~F~q~ 137 (171)
..+.+||+-+ .|.|++.-.|.-|.-|-.-....++||+. .+.+.-+..+.+-+....++. ..|-.+.+.+.
T Consensus 120 ~~~kvvIIde-ad~lt~~~~n~LLk~lEep~~~~~~Il~t--~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e 196 (451)
T PRK06305 120 SRYKIYIIDE-VHMLTKEAFNSLLKTLEEPPQHVKFFLAT--TEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE 196 (451)
T ss_pred CCCEEEEEec-HHhhCHHHHHHHHHHhhcCCCCceEEEEe--CChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3456777666 49999988887666666666677777776 222222233444343333322 34667777777
Q ss_pred ccccchHHHHHHHHHH
Q 030814 138 SLEENEPAVKKFEQAA 153 (171)
Q Consensus 138 ~leeNea~~kkfeqa~ 153 (171)
|++-.+++...+-..+
T Consensus 197 g~~i~~~al~~L~~~s 212 (451)
T PRK06305 197 GIETSREALLPIARAA 212 (451)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 8877776666554443
No 254
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=20.62 E-value=1.1e+02 Score=26.87 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=43.3
Q ss_pred cChhhhhchhhhhhhhccCceEEEecCC-CcchhhhhhhhhcCCCccccchhHHHHHHHHhccccchH
Q 030814 78 LSPKYLNKTLPDLARVASDGVLIFAGYP-GQQRAKVAELSKFGRPAKMRSSSWWIRYFVQTSLEENEP 144 (171)
Q Consensus 78 LsprylNkTlPeLaRvs~dgiVif~g~p-gq~~ak~~elskfgr~ak~RsssWW~r~F~q~~leeNea 144 (171)
.+|+=.=.-=-+|.||-+-||.|-.--| +..+....++ .-.+|.++|...|++-.+.
T Consensus 22 at~~AA~Ti~Ddl~~V~~~GI~I~~~~p~~~~~i~l~D~----------D~~~~~~~l~~fg~~~p~~ 79 (254)
T PF08735_consen 22 ATPDAALTIHDDLERVRAMGIEITEEPPAGAVPIELGDV----------DPEALRGALSAFGLELPFD 79 (254)
T ss_pred EcHHHHhhhccCHHHHHhCCeEEEeccCCCCcceeeccC----------CHHHHHHHHHHcCCCCCcc
Confidence 3444333333479999999999999888 7777777777 5679999999999987655
No 255
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=20.59 E-value=4.2e+02 Score=23.32 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=58.1
Q ss_pred cceeecCC--chhHhHhhhhcccccccccccccccchhHHHHHHhHhcceeeeeecCCCCCCCCcccEEEEcccccccCh
Q 030814 3 KVLHVGPD--TCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 80 (171)
Q Consensus 3 kVLHvGP~--tC~vVs~llkee~teAWGVEPyd~~d~d~~CksLv~kG~VRvadikfpLPYR~KSFslVivSDaLdyLsp 80 (171)
+|+=+|=| -.+.+.++|++.+-+..|.+..+.+ .. ..|-+.|+.-.-.- .+-.. ..+|+||+|-.+..-.|
T Consensus 9 ~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~---~~-~~l~~~gi~~~~~~-~~~~~--~~~d~vv~spgi~~~~~ 81 (461)
T PRK00421 9 RIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA---VT-QRLLELGAIIFIGH-DAENI--KDADVVVYSSAIPDDNP 81 (461)
T ss_pred EEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh---HH-HHHHHCCCEEeCCC-CHHHC--CCCCEEEECCCCCCCCH
Confidence 45555544 3344688999999888887665443 12 23656665322111 11111 36999999999987777
Q ss_pred hhhh--------chhhhhh-hhcc-CceEEEecCCC
Q 030814 81 KYLN--------KTLPDLA-RVAS-DGVLIFAGYPG 106 (171)
Q Consensus 81 rylN--------kTlPeLa-Rvs~-dgiVif~g~pg 106 (171)
.... -+-+||+ +... .-+|..||--|
T Consensus 82 ~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnG 117 (461)
T PRK00421 82 ELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHG 117 (461)
T ss_pred HHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCC
Confidence 6543 2456774 5543 35888888555
No 256
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.55 E-value=2.3e+02 Score=19.33 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=47.5
Q ss_pred cccEEEEcccccccChhhhhchhhhhhhhccCceEEEecCCCcchhhhhhhhhcCCCccccchhHHHHH--HHHh--ccc
Q 030814 65 SFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWIRY--FVQT--SLE 140 (171)
Q Consensus 65 SFslVivSDaLdyLsprylNkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfgr~ak~RsssWW~r~--F~q~--~le 140 (171)
..++++..|+=+.++|.++.+.+-.+.+-...++ +.+. +.-+..+-+++.|.+. |... ..-
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGI--VGPK-------------VSGAFLLVRREVFEEVGGFDEDFFLYY 138 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceE--EEcc-------------CceeeEeeeHHHHHHcCCCChhhhccc
Confidence 6789999998888999888777765444322222 2322 2223334444444321 1111 011
Q ss_pred cchHHHHHHHHHHhhccCCCCceeeec
Q 030814 141 ENEPAVKKFEQAASKKSYKPNCQVFHL 167 (171)
Q Consensus 141 eNea~~kkfeqa~~k~sy~p~cqifhl 167 (171)
|+-....++.+.-.+-.|-|...++|.
T Consensus 139 eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 139 EDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred cHHHHHHHHHHcCCeEEEccceEEEec
Confidence 233344455555555667777778875
No 257
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.26 E-value=2.5e+02 Score=22.90 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=64.3
Q ss_pred CccceeecCCc--hhHhHhhhhcccccccccccc--cccc----hhHHHHHHhHhcceeee-------eecCCCCCC-CC
Q 030814 1 MHKVLHVGPDT--CSVVSTLLKEEETEAWGVEPY--DIED----ADARCKSLVHKGIVRVA-------DIKFPLPYR-AK 64 (171)
Q Consensus 1 m~kVLHvGP~t--C~vVs~llkee~teAWGVEPy--d~~d----~d~~CksLv~kG~VRva-------dikfpLPYR-~K 64 (171)
|++|-=||.|+ +++...|++- +-+..++++. .++. .++....+++.|.+..+ .|++.-.|- .+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 45666677775 4556666543 4455444332 2221 12233467777744321 122222221 36
Q ss_pred cccEEEEcccccccChhhh---hchhhhhhhhccCceEEEecCCCcchhhhhhhhhcCCCccccchhHHH
Q 030814 65 SFPLVIVSDALDYLSPKYL---NKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPAKMRSSSWWI 131 (171)
Q Consensus 65 SFslVivSDaLdyLspryl---NkTlPeLaRvs~dgiVif~g~pgq~~ak~~elskfgr~ak~RsssWW~ 131 (171)
..|+||.+= |+.+ -..+.+|.+....+-+|.+.-.|-.-.++++. .++|-+.-.-+|+.
T Consensus 82 ~aDlVi~av------~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~--~~~~~r~ig~h~~~ 143 (282)
T PRK05808 82 DADLVIEAA------TENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAA--TKRPDKVIGMHFFN 143 (282)
T ss_pred cCCeeeecc------cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHh--hCCCcceEEeeccC
Confidence 678888762 2222 36778888877666666666666554555553 35555555555554
Done!