BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030815
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 176 bits (446), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 114/166 (68%)
Query: 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEP 64
K+ KHFVLVHG+ HG W WYK+KP LEAAGH+VTALDL ASG D++KI+++ + Y+Y P
Sbjct: 2 KEGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLP 61
Query: 65 LLEILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVER 124
L E+ SLSADEKV++VGH EK+P KI A+FL AF PD+ H S+V+E+
Sbjct: 62 LXELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQ 121
Query: 125 FFERIPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQLSPPE 170
+ ER P+ WLDTQF S + FFG FL KLYQL PE
Sbjct: 122 YNERTPAENWLDTQFLPYGSPEEPLTSXFFGPKFLAHKLYQLCSPE 167
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 176 bits (445), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 114/166 (68%)
Query: 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEP 64
K+ KHFVLVHG+ HG W WYK+KP LEAAGH+VTALDL ASG D++KI+++ + Y+Y P
Sbjct: 2 KEGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLP 61
Query: 65 LLEILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVER 124
L E+ SLSADEKV++VGH EK+P KI A+FL AF PD+ H S+V+E+
Sbjct: 62 LXELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDSVHNSSFVLEQ 121
Query: 125 FFERIPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQLSPPE 170
+ ER P+ WLDTQF S + FFG FL KLYQL PE
Sbjct: 122 YNERTPAENWLDTQFLPYGSPEEPLTSXFFGPKFLAHKLYQLCSPE 167
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 114/164 (69%)
Query: 2 AEAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEY 61
A AK+QKHFVLVHG GAW WYK+KP LE+AGH+VTA+DL+A+GI+ +++ ++H+F +Y
Sbjct: 5 ANAKQQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDY 64
Query: 62 NEPLLEILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYV 121
+EPL+E++AS+ DEKVV++GH E +P KISVA+F++A MPD H +Y
Sbjct: 65 SEPLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYP 124
Query: 122 VERFFERIPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQ 165
E++ E+ P+ LD+QFS + ++ G F+ LK++Q
Sbjct: 125 FEKYNEKCPADMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQ 168
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 172 bits (436), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 114/164 (69%)
Query: 2 AEAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEY 61
A AK+QKHFVLVHG GAW WYK+KP LE+AGH+VTA+DL+A+GI+ +++ ++H+F +Y
Sbjct: 5 ANAKQQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDY 64
Query: 62 NEPLLEILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYV 121
+EPL+E++AS+ DEKVV++GH E +P KISVA+F++A MPD H +Y
Sbjct: 65 SEPLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYP 124
Query: 122 VERFFERIPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQ 165
E++ E+ P+ LD+QFS + ++ G F+ LK++Q
Sbjct: 125 FEKYNEKCPADMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQ 168
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 172 bits (436), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 114/164 (69%)
Query: 2 AEAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEY 61
A AK+QKHFVLVHG GAW WYK+KP LE+AGH+VTA+DL+A+GI+ +++ ++H+F +Y
Sbjct: 5 ANAKQQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDY 64
Query: 62 NEPLLEILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYV 121
+EPL+E++AS+ DEKVV++GH E +P KISVA+F++A MPD H +Y
Sbjct: 65 SEPLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYP 124
Query: 122 VERFFERIPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQ 165
E++ E+ P+ LD+QFS + ++ G F+ LK++Q
Sbjct: 125 FEKYNEKCPADMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQ 168
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 113/162 (69%)
Query: 4 AKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNE 63
AK+QKHFVLVHG GAW WYK+KP LE+AGH+VTA+DL+A+GI+ +++ ++H+F +Y+E
Sbjct: 1 AKQQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSE 60
Query: 64 PLLEILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVE 123
PL+E++AS+ DEKVV++GH E +P KISVA+F++A MPD H +Y E
Sbjct: 61 PLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFE 120
Query: 124 RFFERIPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQ 165
++ E+ P+ LD+QFS + ++ G F+ LK++Q
Sbjct: 121 KYNEKCPADMMLDSQFSTYGNPENPGMSMILGPQFMALKMFQ 162
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 149 bits (376), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 108/166 (65%), Gaps = 2/166 (1%)
Query: 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEP 64
+++ HFVLVH + HGAW WYK+KP LE+AGHRVTA++L ASGID + IQ V + EY++P
Sbjct: 2 ERKHHFVLVHNAYHGAWIWYKLKPLLESAGHRVTAVELAASGIDPRPIQAVETVDEYSKP 61
Query: 65 LLEILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVER 124
L+E L SL +E+V++VG + FP KI V +FL AF+PDT H PS+V+++
Sbjct: 62 LIETLKSLPENEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDK 121
Query: 125 FFERIPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQLSPPE 170
+ E +P G D +FS ++ N + L G F+ +LYQ P E
Sbjct: 122 YME-MPGG-LGDCEFSSHETRNGTMSLLKMGPKFMKARLYQNCPIE 165
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 144 bits (362), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEI 68
HFVL+H HGAW W+K+KP LEA GH+VTALDL ASG+D ++I+++ SF EY+EPLL
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 69 LASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFFER 128
L +L EKV++VG +K+ KI+ A+F + +PDT+H PSYVV++ E
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 129 IPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQLSPPE 170
P +W DT + L G++ L LY L PE
Sbjct: 125 FP--DWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPE 164
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 144 bits (362), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEI 68
HFVL+H HGAW W+K+KP LEA GH+VTALDL ASG+D ++I+++ SF EY+EPLL
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 69 LASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFFER 128
L +L EKV++VG +K+ KI+ A+F + +PDT+H PSYVV++ E
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 129 IPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQLSPPE 170
P +W DT + L G++ L LY L PE
Sbjct: 125 FP--DWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPE 164
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 144 bits (362), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEI 68
HFVL+H HGAW W+K+KP LEA GH+VTALDL ASG+D ++I+++ SF EY+EPLL
Sbjct: 4 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 63
Query: 69 LASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFFER 128
L +L EKV++VG +K+ KI+ A+F + +PDT+H PSYVV++ E
Sbjct: 64 LEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 123
Query: 129 IPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQLSPPE 170
P +W DT + L G++ L LY L PE
Sbjct: 124 FP--DWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPE 163
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 144 bits (362), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Query: 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEI 68
HFVL+H HGAW W+K+KP LEA GH+VTALDL ASG+D ++I+++ SF EY+EPLL
Sbjct: 5 HFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLLTF 64
Query: 69 LASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFFER 128
L +L EKV++VG +K+ KI+ A+F + +PDT+H PSYVV++ E
Sbjct: 65 LEALPPGEKVILVGESCGGLNIAIAADKYXEKIAAAVFHNSVLPDTEHCPSYVVDKLMEV 124
Query: 129 IPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQLSPPE 170
P +W DT + L G++ L LY L PE
Sbjct: 125 FP--DWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPE 164
>pdb|3RKS|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
Length = 258
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEI 68
HFVL+H HGAW W+K+KP LE AGH+VTALD+ ASGID ++I+ ++SF EY+EPLL
Sbjct: 5 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 64
Query: 69 LASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFFER 128
L L EKV+IVG +++ KI+ +F + +PDT H PSY VE+ E
Sbjct: 65 LEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 124
Query: 129 IPSGEWLDTQ-FSVIDSSNPSRKTLFFGYSFLTLKLY 164
P +W DT+ F+ + + + T+ G+ L L+
Sbjct: 125 FP--DWRDTEYFTFTNITGETITTMKLGFVLLRENLF 159
>pdb|1E89|A Chain A, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E89|B Chain B, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E8D|A Chain A, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
pdb|1E8D|B Chain B, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
Length = 262
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEI 68
HFVL+H HGAW W+K+KP LE AGH+VTALD+ ASGID ++I+ ++SF EY+EPLL
Sbjct: 9 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 68
Query: 69 LASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFFER 128
L L EKV+IVG +++ KI+ +F + +PDT H PSY VE+ E
Sbjct: 69 LEKLPQGEKVIIVGEACAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 128
Query: 129 IPSGEWLDTQ-FSVIDSSNPSRKTLFFGYSFLTLKLY 164
P +W DT+ F+ + + + T+ G+ L L+
Sbjct: 129 FP--DWRDTEYFTFTNITGETITTMKLGFVLLRENLF 163
>pdb|1DWQ|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWQ|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
Length = 262
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 3/157 (1%)
Query: 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEI 68
HFVL+H HGAW W+K+KP LE AGH+VTALD+ ASGID ++I+ ++SF EY+EPLL
Sbjct: 9 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 68
Query: 69 LASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFFER 128
L L EKV+IVG +++ KI+ +F + +PDT H PSY VE+ E
Sbjct: 69 LEKLPQGEKVIIVGESXAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 128
Query: 129 IPSGEWLDTQ-FSVIDSSNPSRKTLFFGYSFLTLKLY 164
P +W DT+ F+ + + + T+ G+ L L+
Sbjct: 129 FP--DWRDTEYFTFTNITGETITTMKLGFVLLRENLF 163
>pdb|1DWO|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWO|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWP|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
pdb|1DWP|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
Length = 262
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEI 68
HFVL+H HGAW W+K+KP LE AGH+VTALD+ ASGID ++I+ ++SF EY+EPLL
Sbjct: 9 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 68
Query: 69 LASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFFER 128
L L EKV+IVG +++ KI+ +F + +PDT H PSY VE+ E
Sbjct: 69 LEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 128
Query: 129 IPSGEWLDTQ-FSVIDSSNPSRKTLFFGYSFLTLKLY 164
P +W DT+ F+ + + + T+ G+ L L+
Sbjct: 129 FP--DWRDTEYFTFTNITGETITTMKLGFVLLRENLF 163
>pdb|3RKT|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|E Chain E, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|F Chain F, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|G Chain G, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|H Chain H, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
Length = 258
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEI 68
HFVL+H HGAW W+K+KP LE AGH+VTALD+ ASGID ++I+ ++SF EY+EPLL
Sbjct: 5 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 64
Query: 69 LASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFFER 128
L L EKV+IVG +++ KI+ +F + +PDT H PSY VE+ E
Sbjct: 65 LEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 124
Query: 129 IPSGEWLDTQ-FSVIDSSNPSRKTLFFGYSFLTLKLY 164
P +W DT+ F+ + + + T+ G+ L L+
Sbjct: 125 FP--DWRDTEYFTFTNITGETITTMKLGFVLLRENLF 159
>pdb|1EB8|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB8|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
Length = 262
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 94/157 (59%), Gaps = 3/157 (1%)
Query: 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEI 68
HFVL+H HGAW W+K+KP LE AGH+VTALD+ ASGID ++I+ ++SF EY+EPLL
Sbjct: 9 HFVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTF 68
Query: 69 LASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFFER 128
L L EKV+IVG +++ KI+ +F + +PDT H PSY VE+ E
Sbjct: 69 LEKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVFHNSLLPDTVHSPSYTVEKLLES 128
Query: 129 IPSGEWLDTQ-FSVIDSSNPSRKTLFFGYSFLTLKLY 164
P DT+ F+ + + + T+ G+ L L+
Sbjct: 129 FPDAR--DTEYFTFTNITGETITTMKLGFVLLRENLF 163
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 92/164 (56%), Gaps = 2/164 (1%)
Query: 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLL 66
+KHFVLVH + HGAWCWYK+ + ++GH VTALDL ASGI+ K+ + +F +Y PL+
Sbjct: 12 KKHFVLVHAAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFF 126
E +ASL A+EK+++VGH E FP KISVA+FL+ MP + V +
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAG 131
Query: 127 ERIPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQLSPPE 170
+ LD + + TL G FL +Y LSP E
Sbjct: 132 SAVLG--QLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIE 173
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 92/164 (56%), Gaps = 2/164 (1%)
Query: 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLL 66
+KHFVLVH + HGAWCWYK+ + ++GH VTALDL ASGI+ K+ + +F +Y PL+
Sbjct: 12 KKHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFF 126
E +ASL A+EK+++VGH E FP KISVA+FL+ MP + V +
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAG 131
Query: 127 ERIPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQLSPPE 170
+ LD + + TL G FL +Y LSP E
Sbjct: 132 SAVLG--QLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIE 173
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 129 bits (325), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 92/164 (56%), Gaps = 2/164 (1%)
Query: 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLL 66
+KHFVLVH + HGAWCWYK+ + ++GH VTALDL ASGI+ K+ + +F +Y PL+
Sbjct: 12 KKHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLM 71
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERFF 126
E +ASL A+EK+++VGH E FP KISVA+FL+ MP + V +
Sbjct: 72 EFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAG 131
Query: 127 ERIPSGEWLDTQFSVIDSSNPSRKTLFFGYSFLTLKLYQLSPPE 170
+ LD + + TL G FL +Y LSP E
Sbjct: 132 SAVLG--QLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIE 173
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 11 VLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMK-----KIQDVHSFYEYNEPL 65
+ +HG+ ++ W + P + AAG+R A DL G K ++QD H Y
Sbjct: 33 LFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPDIEYRLQD-HVAYXDG--- 88
Query: 66 LEILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSY 120
+ +L D+ V+++ H P +++ F A +P PSY
Sbjct: 89 --FIDALGLDDXVLVI-HDWGSVIGXRHARLNPDRVAAVAFXEALVPPALPXPSY 140
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 11 VLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMK-KIQDVHSFYEYNEPLLEIL 69
VL+HG + W P L AG+RV A+D G K ++Q + E ++ +L
Sbjct: 37 VLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVL 96
Query: 70 ASLSADEKVVIVGH 83
S A E+ +VGH
Sbjct: 97 DSYGA-EQAFVVGH 109
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 11 VLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMK-KIQDVHSFYEYNEPLLEIL 69
VL+HG + W P L AG+RV A+D G K ++Q + E ++ +L
Sbjct: 31 VLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVL 90
Query: 70 ASLSADEKVVIVGH 83
S A E+ +VGH
Sbjct: 91 DSYGA-EQAFVVGH 103
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 10 FVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQD-VHSFYEYNEPLLEI 68
F+ +HG ++ + K+ P AAG RV A DL G K D V++F + LL
Sbjct: 49 FLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVYTFGFHRRSLLAF 108
Query: 69 LASLSADEKVVIV 81
L +L E+V +V
Sbjct: 109 LDALQL-ERVTLV 120
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 3 EAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMK---KIQDVHSFY 59
+ K V HG+ ++ W + P LE G R+ A DL G K D +S+
Sbjct: 24 DEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGASDKLSPSGPDRYSYG 82
Query: 60 EYNEPLLEILASLSADEKVVIVGH 83
E + L + +L + VV+V H
Sbjct: 83 EQRDFLFALWDALDLGDHVVLVLH 106
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 3 EAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMK---KIQDVHSFY 59
+ K V HG+ ++ W + P LE G R+ A DL G K D +S+
Sbjct: 26 DEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGASDKLSPSGPDRYSYG 84
Query: 60 EYNEPLLEILASLSADEKVVIVGH 83
E + L + +L + VV+V H
Sbjct: 85 EQRDFLFALWDALDLGDHVVLVLH 108
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 10 FVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEIL 69
L HG + W P L AG RV A IDMK D S E E +E+L
Sbjct: 259 LCLCHGFPESWFSWRYQIPALAQAGFRVLA-------IDMKGYGDSSSPPEIEEYAMELL 311
Query: 70 ASLSAD-------EKVVIVGHXXXXXXXXXXXEKFPHKI-SVAIFLTAFM-PDTKHQPSY 120
+ V +GH +P ++ +VA T FM PD P
Sbjct: 312 CKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTPFMPPDPDVSPMK 371
Query: 121 VV 122
V+
Sbjct: 372 VI 373
>pdb|1FJH|A Chain A, The Crystal Structure Of 3-Alpha-Hydroxysteroid
Dehydrogenase From Comamonas Testosteroni, A Member Of
The Short Chain DehydrogenaseREDUCTASE FAMILY
pdb|1FJH|B Chain B, The Crystal Structure Of 3-Alpha-Hydroxysteroid
Dehydrogenase From Comamonas Testosteroni, A Member Of
The Short Chain DehydrogenaseREDUCTASE FAMILY
pdb|1FK8|A Chain A, The Crystal Structure Of The Binary Complex With Nad Of 3-
Alpha-Hydroxysteroid Dehydrogenase From Comamonas
Testosteroni, A Member Of The Short Chain
DehydrogenaseREDUCTASE FAMILY
pdb|1FK8|B Chain B, The Crystal Structure Of The Binary Complex With Nad Of 3-
Alpha-Hydroxysteroid Dehydrogenase From Comamonas
Testosteroni, A Member Of The Short Chain
DehydrogenaseREDUCTASE FAMILY
Length = 257
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 30 LEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS--ADEKVVIVGHXXXX 87
LEAAGH++ +D+ D + I D+ + + + ++LA S D V+ G
Sbjct: 21 LEAAGHQIVGIDIR----DAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAG----- 71
Query: 88 XXXXXXXEKFPHKISVAIF-----LTAFMPDTK--HQPSYVV 122
+ + +SV F + AF+P K HQP+ VV
Sbjct: 72 --LGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVV 111
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 11 VLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASG----IDMKKIQDVHSFYEYNEPLL 66
+ +HG W +V L A G+RV A DL G ++M +F + ++
Sbjct: 30 LCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQIDRVI 89
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLTAFMPDTKHQPSYVVERF 125
+ L D+ +++VGH P KI I + +P + + V +
Sbjct: 90 QEL----PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQL 144
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLE 67
+ +L HG N A W + L AG+RV A+D K +SF +
Sbjct: 47 RTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHA 106
Query: 68 ILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVAIFLT 108
+L L + ++GH +P ++ + +
Sbjct: 107 LLERLGV-ARASVIGHSXGGXLATRYALLYPRQVERLVLVN 146
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 11 VLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYN---EPLLE 67
VL+HG W + +L A G+RV D G K V++ Y+Y+ L
Sbjct: 27 VLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSK----VNTGYDYDTFAADLHT 82
Query: 68 ILASLSADEKVVIVGHXXXXXXXXXXXEKFPH----KISVAIFLTAFMPDTKHQPSYVVE 123
+L +L VV+VG ++ H K++ L F+ P V +
Sbjct: 83 VLETLDL-RDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQ 141
Query: 124 RFFERIPS 131
F+ I +
Sbjct: 142 EVFDGIEA 149
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 2 AEAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEY 61
+E + + +HG+ ++ W V P +E R DL G K + ++
Sbjct: 38 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDH 96
Query: 62 NEPLLEILASLSADEKVVIVGH 83
+ L L+ +K++ VGH
Sbjct: 97 YKYLTAWFELLNLPKKIIFVGH 118
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 2 AEAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEY 61
+E + + +HG+ ++ W V P +E R DL G K + ++
Sbjct: 39 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDH 97
Query: 62 NEPLLEILASLSADEKVVIVGH 83
+ L L+ +K++ VGH
Sbjct: 98 YKYLTAWFELLNLPKKIIFVGH 119
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 2 AEAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEY 61
+E + + +HG+ ++ W V P +E R DL G K + ++
Sbjct: 39 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDH 97
Query: 62 NEPLLEILASLSADEKVVIVGH 83
+ L L+ +K++ VGH
Sbjct: 98 YKYLTAWFELLNLPKKIIFVGH 119
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 2 AEAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEY 61
+E + + +HG+ ++ W V P +E R DL G K + ++
Sbjct: 38 SEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGNGSYRLLDH 96
Query: 62 NEPLLEILASLSADEKVVIVGH 83
+ L L+ +K++ VGH
Sbjct: 97 YKYLTAWFELLNLPKKIIFVGH 118
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 11 VLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASG 46
L HG + W P L AG+RV A+D+ G
Sbjct: 43 CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG 78
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 11 VLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASG 46
L HG + W P L AG+RV A+D+ G
Sbjct: 262 CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG 297
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole
Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole
Inhibitor
Length = 344
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 11 VLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASG 46
L HG + W P L AG+RV A+D+ G
Sbjct: 58 CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG 93
>pdb|3GU1|A Chain A, Y97w Mutant In Organophosphorus Hydrolase From Deinococcus
Radiodurans
Length = 337
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVA 104
E+L SL AD +++GH E H +S+A
Sbjct: 202 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 239
>pdb|3GTF|A Chain A, D71gE101GV235L MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVA 104
E+L SL AD +++GH E H +S+A
Sbjct: 202 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 239
>pdb|3GTI|A Chain A, D71gE101GM234L MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVA 104
E+L SL AD +++GH E H +S+A
Sbjct: 202 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 239
>pdb|3GTX|A Chain A, D71gE101G MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM
DEINOCO Radiodurans
Length = 339
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVA 104
E+L SL AD +++GH E H +S+A
Sbjct: 204 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 241
>pdb|3GTH|A Chain A, D71gE101GM234I MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVA 104
E+L SL AD +++GH E H +S+A
Sbjct: 202 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 239
>pdb|3GU2|A Chain A, Y97lG100-E101- Mutant In Organophosphorus Hydrolase
Length = 336
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVA 104
E+L SL AD +++GH E H +S+A
Sbjct: 201 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 238
>pdb|2ZC1|A Chain A, Organophosphorus Hydrolase From Deinococcus Radiodurans
Length = 333
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVA 104
E+L SL AD +++GH E H +S+A
Sbjct: 198 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 235
>pdb|3GU9|A Chain A, R228a Mutation In Organophosphorus Hydrolase From
Deinococcu Radiodurans
Length = 331
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVA 104
E+L SL AD +++GH E H +S+A
Sbjct: 196 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 233
>pdb|3HTW|A Chain A, Organophosphorus Hydrolase From Deinococcus Radiodurans
With Cacodylate Bound
Length = 328
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVA 104
E+L SL AD +++GH E H +S+A
Sbjct: 193 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 230
>pdb|3FDK|A Chain A, Crystal Structure Of Hydrolase Dr0930 With Promiscuous
Catalytic Activity
Length = 323
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 67 EILASLSADEKVVIVGHXXXXXXXXXXXEKFPHKISVA 104
E+L SL AD +++GH E H +S+A
Sbjct: 188 ELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIA 225
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Drosophila Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Drosophila Heat Shock Transcription Factor
Length = 106
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 29 QLEAAG-HRVTALDLTASGIDMKKIQDVHSFYEYNEPLL 66
QL G H++T++D D +I+ H F++ N P L
Sbjct: 61 QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFL 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,602,472
Number of Sequences: 62578
Number of extensions: 158317
Number of successful extensions: 402
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 60
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)