Query 030815
Match_columns 171
No_of_seqs 141 out of 2059
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:59:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02211 methyl indole-3-aceta 99.9 4.8E-23 1E-27 153.2 16.9 114 2-115 13-126 (273)
2 PLN02965 Probable pheophorbida 99.9 1.8E-22 3.9E-27 148.7 16.3 104 8-112 4-108 (255)
3 PRK00870 haloalkane dehalogena 99.9 1.2E-21 2.7E-26 147.5 15.3 106 6-112 45-151 (302)
4 PLN02824 hydrolase, alpha/beta 99.9 8E-22 1.7E-26 147.9 13.5 104 6-111 28-137 (294)
5 TIGR02240 PHA_depoly_arom poly 99.9 1.3E-21 2.9E-26 145.5 11.6 104 6-112 24-127 (276)
6 PRK03592 haloalkane dehalogena 99.9 3.5E-21 7.6E-26 144.5 13.7 104 5-111 25-128 (295)
7 PF12697 Abhydrolase_6: Alpha/ 99.9 1.2E-20 2.7E-25 134.4 13.8 101 10-112 1-102 (228)
8 PLN02385 hydrolase; alpha/beta 99.9 6.4E-21 1.4E-25 146.4 12.2 107 6-112 86-198 (349)
9 PLN02679 hydrolase, alpha/beta 99.9 1.1E-20 2.3E-25 145.7 13.1 104 6-111 87-191 (360)
10 PRK11126 2-succinyl-6-hydroxy- 99.9 1.5E-20 3.1E-25 137.0 12.8 100 7-111 2-102 (242)
11 TIGR03611 RutD pyrimidine util 99.8 1.5E-20 3.1E-25 137.2 11.6 106 5-112 11-116 (257)
12 PHA02857 monoglyceride lipase; 99.8 2.6E-20 5.6E-25 138.5 12.8 107 6-112 24-133 (276)
13 COG2267 PldB Lysophospholipase 99.8 9.8E-20 2.1E-24 136.8 15.5 108 8-115 35-146 (298)
14 PRK10673 acyl-CoA esterase; Pr 99.8 4.1E-20 8.8E-25 135.6 13.0 102 5-110 14-115 (255)
15 PRK03204 haloalkane dehalogena 99.8 5.2E-20 1.1E-24 137.8 12.9 105 5-111 32-136 (286)
16 TIGR03343 biphenyl_bphD 2-hydr 99.8 5.8E-20 1.3E-24 136.7 12.3 105 5-110 28-135 (282)
17 PLN03087 BODYGUARD 1 domain co 99.8 2.1E-19 4.6E-24 142.0 15.8 104 7-111 201-309 (481)
18 TIGR03056 bchO_mg_che_rel puta 99.8 8.7E-20 1.9E-24 135.1 12.9 105 6-112 27-131 (278)
19 PLN02298 hydrolase, alpha/beta 99.8 6.3E-20 1.4E-24 139.8 12.3 107 6-112 58-170 (330)
20 PRK10749 lysophospholipase L2; 99.8 2.4E-19 5.2E-24 136.7 15.1 107 6-112 53-167 (330)
21 KOG4178 Soluble epoxide hydrol 99.8 1.6E-19 3.5E-24 133.5 13.3 107 5-112 42-149 (322)
22 PLN02578 hydrolase 99.8 1E-19 2.2E-24 140.1 12.7 104 5-111 84-187 (354)
23 PLN03084 alpha/beta hydrolase 99.8 3.2E-19 6.9E-24 138.1 14.4 105 6-112 126-233 (383)
24 PRK10349 carboxylesterase BioH 99.8 2.2E-19 4.7E-24 132.1 12.3 95 8-110 14-108 (256)
25 TIGR03695 menH_SHCHC 2-succiny 99.8 2.4E-19 5.2E-24 129.5 12.3 103 7-111 1-105 (251)
26 TIGR02427 protocat_pcaD 3-oxoa 99.8 1.2E-19 2.6E-24 131.4 9.6 103 6-111 12-114 (251)
27 PRK06489 hypothetical protein; 99.8 2.6E-19 5.7E-24 138.1 11.9 103 7-110 69-188 (360)
28 TIGR03101 hydr2_PEP hydrolase, 99.8 7E-19 1.5E-23 129.8 13.5 105 7-112 25-135 (266)
29 TIGR01250 pro_imino_pep_2 prol 99.8 1.5E-18 3.3E-23 128.2 13.5 105 6-111 24-131 (288)
30 KOG4409 Predicted hydrolase/ac 99.8 4.5E-19 9.8E-24 131.9 10.1 110 5-116 88-200 (365)
31 COG1647 Esterase/lipase [Gener 99.8 1E-18 2.2E-23 122.4 10.5 104 6-112 14-119 (243)
32 PLN02652 hydrolase; alpha/beta 99.8 2.6E-18 5.6E-23 133.7 13.1 106 6-112 135-246 (395)
33 KOG1455 Lysophospholipase [Lip 99.8 3.2E-18 7E-23 125.2 12.6 111 7-117 54-170 (313)
34 TIGR01738 bioH putative pimelo 99.8 2.5E-18 5.3E-23 124.2 10.0 97 7-111 4-100 (245)
35 PLN02894 hydrolase, alpha/beta 99.8 1E-17 2.3E-22 130.8 14.0 106 5-112 103-212 (402)
36 PRK14875 acetoin dehydrogenase 99.8 2E-17 4.3E-22 127.7 13.0 104 5-111 129-232 (371)
37 PRK08775 homoserine O-acetyltr 99.8 5.2E-18 1.1E-22 130.0 9.4 101 7-111 57-173 (343)
38 TIGR01249 pro_imino_pep_1 prol 99.7 2E-17 4.4E-22 124.9 11.2 104 7-112 27-131 (306)
39 KOG1454 Predicted hydrolase/ac 99.7 1.9E-17 4.1E-22 125.7 10.9 112 5-117 56-172 (326)
40 TIGR01392 homoserO_Ac_trn homo 99.7 3E-17 6.4E-22 126.3 10.0 105 7-112 31-163 (351)
41 PLN02511 hydrolase 99.7 1.1E-16 2.4E-21 124.5 12.7 106 5-111 98-210 (388)
42 PRK07581 hypothetical protein; 99.7 2.4E-17 5.1E-22 126.1 8.3 104 7-111 41-159 (339)
43 TIGR01607 PST-A Plasmodium sub 99.7 6.3E-17 1.4E-21 123.5 10.2 106 6-111 20-185 (332)
44 PLN02980 2-oxoglutarate decarb 99.7 1.7E-16 3.7E-21 140.9 13.0 103 6-110 1370-1479(1655)
45 KOG2564 Predicted acetyltransf 99.7 1.9E-16 4.1E-21 114.6 9.9 105 4-109 71-180 (343)
46 PRK00175 metX homoserine O-ace 99.7 2E-16 4.3E-21 122.9 10.5 105 7-112 48-183 (379)
47 TIGR03100 hydr1_PEP hydrolase, 99.7 1.6E-15 3.5E-20 113.0 14.4 105 6-114 25-137 (274)
48 PRK10985 putative hydrolase; P 99.7 1.7E-15 3.6E-20 115.4 13.3 106 6-112 57-169 (324)
49 PRK05855 short chain dehydroge 99.7 4.2E-16 9.1E-21 126.6 10.6 103 6-109 24-129 (582)
50 PRK13604 luxD acyl transferase 99.7 1.2E-15 2.5E-20 113.9 11.9 104 6-112 36-142 (307)
51 TIGR03230 lipo_lipase lipoprot 99.7 1.7E-15 3.6E-20 118.3 12.6 109 5-114 39-157 (442)
52 PF12695 Abhydrolase_5: Alpha/ 99.7 2.2E-15 4.8E-20 101.4 11.3 94 9-110 1-94 (145)
53 PRK05077 frsA fermentation/res 99.7 3.2E-15 7E-20 117.1 13.5 106 6-112 193-301 (414)
54 cd00707 Pancreat_lipase_like P 99.6 2E-15 4.3E-20 112.4 10.9 109 5-114 34-150 (275)
55 PRK10566 esterase; Provisional 99.6 7.7E-15 1.7E-19 107.5 12.4 103 6-108 26-139 (249)
56 PRK11071 esterase YqiA; Provis 99.6 6E-15 1.3E-19 104.2 11.3 89 8-112 2-94 (190)
57 PLN00021 chlorophyllase 99.6 2.5E-14 5.5E-19 108.1 11.8 108 4-112 49-167 (313)
58 TIGR01836 PHA_synth_III_C poly 99.6 1.7E-14 3.7E-19 111.0 10.6 103 7-113 62-173 (350)
59 TIGR01840 esterase_phb esteras 99.6 1E-13 2.2E-18 99.5 12.4 108 5-112 11-131 (212)
60 KOG2382 Predicted alpha/beta h 99.6 9.4E-14 2E-18 103.1 12.0 105 5-111 50-159 (315)
61 PF00561 Abhydrolase_1: alpha/ 99.5 8.9E-14 1.9E-18 99.9 9.4 75 35-110 1-78 (230)
62 PF00975 Thioesterase: Thioest 99.5 2.7E-13 5.7E-18 98.2 11.5 104 8-114 1-107 (229)
63 PLN02872 triacylglycerol lipas 99.5 2.8E-14 6E-19 111.0 6.4 107 6-113 73-199 (395)
64 PF07819 PGAP1: PGAP1-like pro 99.5 1E-12 2.2E-17 95.1 13.4 116 6-122 3-134 (225)
65 COG0596 MhpC Predicted hydrola 99.5 6.3E-13 1.4E-17 95.8 11.5 102 7-112 21-124 (282)
66 PF06342 DUF1057: Alpha/beta h 99.5 1.4E-12 3E-17 95.3 12.3 107 8-116 36-142 (297)
67 TIGR03502 lipase_Pla1_cef extr 99.5 7.3E-13 1.6E-17 109.5 11.9 90 7-96 449-575 (792)
68 PF12146 Hydrolase_4: Putative 99.5 3E-13 6.6E-18 81.9 6.9 65 6-70 15-79 (79)
69 TIGR02821 fghA_ester_D S-formy 99.5 2.3E-12 5.1E-17 96.0 13.0 108 6-113 41-175 (275)
70 PRK06765 homoserine O-acetyltr 99.4 1.3E-12 2.8E-17 101.6 11.0 107 5-112 54-197 (389)
71 PRK11460 putative hydrolase; P 99.4 3.2E-12 7E-17 93.0 11.7 107 5-111 14-138 (232)
72 TIGR00976 /NonD putative hydro 99.4 1.4E-12 3E-17 105.9 10.4 106 5-112 20-133 (550)
73 TIGR01838 PHA_synth_I poly(R)- 99.4 2.9E-12 6.3E-17 102.7 11.4 107 6-113 187-304 (532)
74 PF10230 DUF2305: Uncharacteri 99.4 1.3E-11 2.7E-16 91.6 13.3 112 7-118 2-129 (266)
75 PLN02442 S-formylglutathione h 99.4 1E-11 2.2E-16 93.0 12.7 107 5-112 45-179 (283)
76 KOG4391 Predicted alpha/beta h 99.4 2.1E-12 4.5E-17 90.8 7.4 111 3-114 74-187 (300)
77 KOG1552 Predicted alpha/beta h 99.4 8.8E-12 1.9E-16 89.9 10.2 104 7-113 60-165 (258)
78 PRK07868 acyl-CoA synthetase; 99.4 7.5E-12 1.6E-16 107.8 11.5 104 5-111 65-177 (994)
79 COG3571 Predicted hydrolase of 99.3 2.2E-11 4.8E-16 81.8 10.9 135 8-143 15-156 (213)
80 COG0429 Predicted hydrolase of 99.3 2.9E-11 6.3E-16 90.1 10.8 106 4-109 72-183 (345)
81 PF06821 Ser_hydrolase: Serine 99.3 2.8E-11 6.2E-16 84.0 9.8 91 10-113 1-93 (171)
82 PF12740 Chlorophyllase2: Chlo 99.3 2.8E-11 6E-16 88.3 10.0 108 3-111 13-131 (259)
83 PF01674 Lipase_2: Lipase (cla 99.3 1.5E-11 3.2E-16 88.3 7.9 104 7-112 1-124 (219)
84 KOG1838 Alpha/beta hydrolase [ 99.3 7E-11 1.5E-15 90.8 12.0 107 5-111 123-236 (409)
85 PRK10162 acetyl esterase; Prov 99.3 6.5E-11 1.4E-15 90.1 11.4 104 6-113 80-197 (318)
86 COG3319 Thioesterase domains o 99.3 7.1E-11 1.5E-15 86.6 10.7 101 8-112 1-104 (257)
87 PF02230 Abhydrolase_2: Phosph 99.2 1.1E-10 2.4E-15 84.1 9.6 113 4-116 11-145 (216)
88 COG3208 GrsT Predicted thioest 99.2 8.2E-11 1.8E-15 84.4 8.7 106 5-112 5-113 (244)
89 PRK10252 entF enterobactin syn 99.2 2.7E-10 5.9E-15 100.6 12.1 102 6-111 1067-1171(1296)
90 PF05990 DUF900: Alpha/beta hy 99.2 3.6E-10 7.7E-15 82.3 9.7 110 3-112 14-138 (233)
91 PF06500 DUF1100: Alpha/beta h 99.2 1.6E-10 3.5E-15 89.3 8.1 107 6-113 189-298 (411)
92 PLN02733 phosphatidylcholine-s 99.1 3.7E-10 7.9E-15 88.9 9.3 94 19-116 106-206 (440)
93 KOG4667 Predicted esterase [Li 99.1 9E-10 2E-14 77.6 10.0 104 5-110 31-138 (269)
94 PF00151 Lipase: Lipase; Inte 99.1 2E-10 4.3E-15 87.6 7.1 112 5-117 69-193 (331)
95 PF01738 DLH: Dienelactone hyd 99.1 8.8E-10 1.9E-14 79.4 10.0 104 5-109 12-130 (218)
96 COG0400 Predicted esterase [Ge 99.1 7.5E-10 1.6E-14 78.9 9.1 109 5-115 16-138 (207)
97 TIGR01839 PHA_synth_II poly(R) 99.1 1.1E-09 2.3E-14 87.8 10.5 106 5-114 213-331 (560)
98 PF07859 Abhydrolase_3: alpha/ 99.1 8.5E-10 1.8E-14 78.9 8.3 100 10-113 1-112 (211)
99 COG2945 Predicted hydrolase of 99.1 3.1E-09 6.8E-14 73.6 10.5 106 5-111 26-137 (210)
100 COG2021 MET2 Homoserine acetyl 99.0 1.6E-09 3.4E-14 82.1 9.3 108 6-114 50-185 (368)
101 COG3545 Predicted esterase of 99.0 3E-09 6.4E-14 72.7 9.5 96 7-115 2-98 (181)
102 PF03403 PAF-AH_p_II: Platelet 99.0 1.2E-09 2.7E-14 84.8 8.5 109 5-114 98-265 (379)
103 PF07224 Chlorophyllase: Chlor 99.0 1.4E-09 3.1E-14 78.7 8.0 111 3-114 42-160 (307)
104 PF06028 DUF915: Alpha/beta hy 99.0 3.2E-09 7E-14 78.0 10.1 109 6-114 10-146 (255)
105 PF05728 UPF0227: Uncharacteri 99.0 6.5E-09 1.4E-13 73.1 10.9 87 10-112 2-92 (187)
106 PF05057 DUF676: Putative seri 99.0 6.5E-09 1.4E-13 75.0 10.8 111 5-117 2-131 (217)
107 COG0412 Dienelactone hydrolase 99.0 1.3E-08 2.9E-13 74.2 12.0 105 7-112 27-147 (236)
108 PF00326 Peptidase_S9: Prolyl 99.0 2.8E-09 6E-14 76.5 8.3 94 23-116 3-104 (213)
109 PF08538 DUF1749: Protein of u 98.9 1.2E-08 2.7E-13 76.0 10.5 103 6-116 32-153 (303)
110 PF10503 Esterase_phd: Esteras 98.9 5.3E-08 1.1E-12 70.1 12.6 109 6-114 15-135 (220)
111 COG1506 DAP2 Dipeptidyl aminop 98.9 2.3E-09 5E-14 88.4 6.2 101 8-110 395-506 (620)
112 COG0657 Aes Esterase/lipase [L 98.9 3E-08 6.4E-13 75.3 11.2 107 5-115 77-195 (312)
113 KOG1515 Arylacetamide deacetyl 98.9 5.5E-08 1.2E-12 74.1 12.3 111 5-119 88-215 (336)
114 COG1075 LipA Predicted acetylt 98.9 1.2E-08 2.6E-13 78.1 8.3 106 7-116 59-169 (336)
115 PF02129 Peptidase_S15: X-Pro 98.9 2.9E-08 6.3E-13 73.9 9.8 109 4-114 17-139 (272)
116 PRK10115 protease 2; Provision 98.8 1.5E-08 3.3E-13 84.3 8.3 108 5-112 443-560 (686)
117 COG4782 Uncharacterized protei 98.8 4.2E-08 9E-13 74.2 9.8 107 5-111 114-234 (377)
118 KOG2984 Predicted hydrolase [G 98.8 3.3E-09 7.1E-14 74.2 3.6 108 6-114 41-152 (277)
119 KOG2931 Differentiation-relate 98.8 1.5E-07 3.2E-12 69.4 11.8 118 6-126 45-171 (326)
120 PF06057 VirJ: Bacterial virul 98.8 3.5E-08 7.6E-13 68.7 8.2 99 8-112 3-108 (192)
121 KOG2624 Triglyceride lipase-ch 98.8 8.8E-09 1.9E-13 80.0 5.7 108 5-112 71-200 (403)
122 PF03096 Ndr: Ndr family; Int 98.8 8.8E-08 1.9E-12 70.8 10.5 105 6-112 22-135 (283)
123 smart00824 PKS_TE Thioesterase 98.8 1.2E-07 2.6E-12 67.1 10.9 98 12-113 2-104 (212)
124 KOG2565 Predicted hydrolases o 98.7 5E-08 1.1E-12 74.0 8.0 99 7-106 152-259 (469)
125 KOG3847 Phospholipase A2 (plat 98.7 4.4E-08 9.5E-13 72.7 5.8 111 6-117 117-281 (399)
126 TIGR01849 PHB_depoly_PhaZ poly 98.7 4.8E-07 1E-11 70.6 11.2 104 8-115 103-212 (406)
127 PF12715 Abhydrolase_7: Abhydr 98.7 1.7E-07 3.7E-12 71.8 8.4 104 5-109 113-258 (390)
128 PF05677 DUF818: Chlamydia CHL 98.7 2.6E-07 5.6E-12 69.6 9.2 100 5-108 135-251 (365)
129 PF05448 AXE1: Acetyl xylan es 98.7 4.8E-07 1E-11 68.9 10.9 107 4-112 80-210 (320)
130 COG4814 Uncharacterized protei 98.6 4E-07 8.6E-12 65.8 9.0 106 7-112 45-177 (288)
131 PF02450 LCAT: Lecithin:choles 98.6 2.8E-07 6E-12 72.1 8.9 88 22-118 66-167 (389)
132 COG3509 LpqC Poly(3-hydroxybut 98.6 7.6E-07 1.7E-11 65.8 10.2 119 6-125 60-194 (312)
133 KOG3975 Uncharacterized conser 98.6 2.9E-06 6.2E-11 61.4 11.9 107 5-111 27-147 (301)
134 PRK04940 hypothetical protein; 98.6 6.8E-07 1.5E-11 62.1 8.5 86 10-113 2-94 (180)
135 PF10340 DUF2424: Protein of u 98.5 1.4E-06 3E-11 67.0 9.9 106 6-114 121-238 (374)
136 COG4188 Predicted dienelactone 98.5 8E-07 1.7E-11 67.7 8.2 91 6-96 70-179 (365)
137 PRK10439 enterobactin/ferric e 98.5 2.6E-06 5.7E-11 67.0 11.4 106 6-111 208-323 (411)
138 KOG1553 Predicted alpha/beta h 98.5 9.6E-07 2.1E-11 66.7 8.4 103 6-111 242-345 (517)
139 COG4757 Predicted alpha/beta h 98.5 6.2E-07 1.4E-11 64.1 7.0 87 10-96 33-125 (281)
140 KOG4627 Kynurenine formamidase 98.5 3.7E-07 8.1E-12 64.2 5.7 104 5-111 65-172 (270)
141 PF00756 Esterase: Putative es 98.5 5.6E-07 1.2E-11 66.0 6.8 52 61-112 98-151 (251)
142 COG4099 Predicted peptidase [G 98.4 8.6E-07 1.9E-11 65.6 7.2 102 8-111 192-304 (387)
143 KOG2112 Lysophospholipase [Lip 98.4 1.1E-06 2.4E-11 61.8 7.4 106 7-112 3-129 (206)
144 PLN02606 palmitoyl-protein thi 98.4 6.6E-06 1.4E-10 61.5 11.6 105 6-114 25-135 (306)
145 KOG3724 Negative regulator of 98.4 2.8E-06 6.1E-11 70.0 10.2 111 6-120 88-229 (973)
146 PF02273 Acyl_transf_2: Acyl t 98.4 3.9E-06 8.3E-11 60.7 9.8 100 6-108 29-131 (294)
147 COG2272 PnbA Carboxylesterase 98.4 1E-06 2.2E-11 69.3 6.9 128 5-132 92-240 (491)
148 PF05577 Peptidase_S28: Serine 98.4 3.8E-06 8.2E-11 66.7 10.1 107 7-114 29-151 (434)
149 cd00312 Esterase_lipase Estera 98.4 2.6E-06 5.6E-11 68.6 9.0 106 5-112 93-214 (493)
150 PRK05371 x-prolyl-dipeptidyl a 98.3 4.4E-06 9.5E-11 70.5 10.1 84 25-110 270-372 (767)
151 PF09752 DUF2048: Uncharacteri 98.3 1.2E-05 2.5E-10 61.2 10.9 107 5-112 90-211 (348)
152 COG3150 Predicted esterase [Ge 98.3 4.9E-06 1.1E-10 56.7 7.9 89 10-112 2-92 (191)
153 PF02089 Palm_thioest: Palmito 98.3 3.4E-06 7.5E-11 62.4 7.1 109 5-114 3-119 (279)
154 PF03959 FSH1: Serine hydrolas 98.3 5.6E-06 1.2E-10 59.5 8.1 107 5-113 2-147 (212)
155 PLN02633 palmitoyl protein thi 98.3 2.7E-05 5.9E-10 58.4 11.4 105 5-113 23-133 (314)
156 COG3243 PhaC Poly(3-hydroxyalk 98.3 5.2E-06 1.1E-10 64.3 7.8 103 6-112 106-218 (445)
157 PLN02517 phosphatidylcholine-s 98.2 2.8E-06 6.1E-11 68.5 6.3 94 22-117 157-269 (642)
158 PF12048 DUF3530: Protein of u 98.2 6.3E-05 1.4E-09 57.2 13.2 110 7-116 87-234 (310)
159 KOG2541 Palmitoyl protein thio 98.2 1.9E-05 4.1E-10 57.8 9.4 103 8-114 24-131 (296)
160 COG3458 Acetyl esterase (deace 98.2 2E-06 4.3E-11 62.9 4.4 107 5-113 81-212 (321)
161 PF00135 COesterase: Carboxyle 98.1 1.9E-05 4.2E-10 63.9 9.6 126 6-131 124-268 (535)
162 KOG4840 Predicted hydrolases o 98.1 5.8E-06 1.3E-10 58.9 5.6 104 7-114 36-147 (299)
163 PTZ00472 serine carboxypeptida 98.1 3.6E-05 7.7E-10 61.6 10.3 108 5-113 75-218 (462)
164 KOG2281 Dipeptidyl aminopeptid 98.0 3.1E-05 6.8E-10 62.9 8.5 104 6-109 641-760 (867)
165 KOG2100 Dipeptidyl aminopeptid 98.0 5.7E-05 1.2E-09 63.8 10.1 107 6-112 525-645 (755)
166 KOG3967 Uncharacterized conser 97.9 0.00036 7.8E-09 49.7 11.0 105 7-111 101-227 (297)
167 KOG2369 Lecithin:cholesterol a 97.9 1.6E-05 3.4E-10 62.4 4.3 88 21-114 124-228 (473)
168 COG2936 Predicted acyl esteras 97.9 6.4E-05 1.4E-09 60.7 7.3 109 4-112 42-160 (563)
169 COG0627 Predicted esterase [Ge 97.8 0.00018 3.8E-09 54.8 8.3 109 6-114 53-190 (316)
170 cd00741 Lipase Lipase. Lipase 97.8 0.00012 2.7E-09 49.7 6.8 41 74-114 26-70 (153)
171 COG3946 VirJ Type IV secretory 97.7 0.00025 5.4E-09 54.9 8.0 86 7-98 260-348 (456)
172 KOG1202 Animal-type fatty acid 97.6 0.00029 6.3E-09 61.2 8.3 96 5-110 2121-2218(2376)
173 PF01764 Lipase_3: Lipase (cla 97.6 0.00028 6.1E-09 47.0 6.1 36 61-97 50-85 (140)
174 PF01083 Cutinase: Cutinase; 97.6 0.00056 1.2E-08 47.9 7.7 105 9-114 7-125 (179)
175 KOG3101 Esterase D [General fu 97.6 0.00018 3.9E-09 51.1 5.1 113 5-117 42-182 (283)
176 PF03583 LIP: Secretory lipase 97.5 0.0009 1.9E-08 50.5 9.1 79 26-110 18-112 (290)
177 PF06259 Abhydrolase_8: Alpha/ 97.5 0.0038 8.2E-08 43.6 11.5 109 6-114 18-147 (177)
178 KOG2183 Prolylcarboxypeptidase 97.5 0.00059 1.3E-08 53.1 7.7 104 8-111 81-202 (492)
179 KOG3043 Predicted hydrolase re 97.4 0.0004 8.6E-09 49.7 5.0 102 8-110 40-153 (242)
180 PF07082 DUF1350: Protein of u 97.4 0.0037 8.1E-08 45.7 10.0 83 21-109 34-123 (250)
181 KOG2182 Hydrolytic enzymes of 97.3 0.0032 7E-08 50.1 9.9 108 5-112 84-208 (514)
182 PF11339 DUF3141: Protein of u 97.3 0.0025 5.4E-08 51.1 9.3 102 5-113 66-177 (581)
183 PF08840 BAAT_C: BAAT / Acyl-C 97.3 0.0012 2.7E-08 47.4 6.9 52 62-114 6-59 (213)
184 PF11187 DUF2974: Protein of u 97.3 0.0018 4E-08 46.9 7.5 39 75-113 83-125 (224)
185 cd00519 Lipase_3 Lipase (class 97.3 0.0008 1.7E-08 48.8 5.7 25 74-98 126-150 (229)
186 PF11288 DUF3089: Protein of u 97.2 0.001 2.2E-08 47.5 5.6 63 35-97 46-116 (207)
187 PF00450 Peptidase_S10: Serine 97.2 0.01 2.3E-07 46.7 11.9 108 5-113 38-183 (415)
188 PF04301 DUF452: Protein of un 97.2 0.0035 7.7E-08 45.0 8.3 99 6-130 10-112 (213)
189 COG2819 Predicted hydrolase of 97.1 0.0012 2.5E-08 48.7 5.4 53 62-114 121-175 (264)
190 PF05277 DUF726: Protein of un 97.1 0.0014 3E-08 50.4 6.0 45 74-118 218-267 (345)
191 COG2382 Fes Enterochelin ester 97.1 0.0013 2.9E-08 49.1 5.7 57 58-114 155-215 (299)
192 PF11144 DUF2920: Protein of u 97.0 0.016 3.5E-07 45.4 10.9 37 76-112 184-220 (403)
193 KOG2237 Predicted serine prote 97.0 0.00052 1.1E-08 55.9 2.4 110 4-113 467-586 (712)
194 PLN00413 triacylglycerol lipas 96.7 0.009 1.9E-07 47.6 7.3 51 60-111 269-327 (479)
195 PLN02162 triacylglycerol lipas 96.6 0.0097 2.1E-07 47.4 7.1 49 62-111 265-321 (475)
196 KOG1516 Carboxylesterase and r 96.6 0.011 2.4E-07 48.4 7.8 105 7-111 112-232 (545)
197 KOG4372 Predicted alpha/beta h 96.6 0.0016 3.6E-08 50.5 2.6 90 5-97 78-171 (405)
198 KOG2551 Phospholipase/carboxyh 96.5 0.078 1.7E-06 38.2 10.3 107 5-114 3-150 (230)
199 PLN02454 triacylglycerol lipas 96.5 0.0082 1.8E-07 47.2 5.7 21 77-97 229-249 (414)
200 PLN02571 triacylglycerol lipas 96.3 0.0099 2.2E-07 46.8 5.5 38 59-96 208-246 (413)
201 COG1770 PtrB Protease II [Amin 96.2 0.018 3.9E-07 47.5 6.4 110 5-114 446-565 (682)
202 PF08237 PE-PPE: PE-PPE domain 96.1 0.076 1.6E-06 38.6 8.8 80 34-113 2-91 (225)
203 PLN02310 triacylglycerol lipas 95.9 0.032 7E-07 43.9 6.6 37 61-97 191-230 (405)
204 PLN02408 phospholipase A1 95.8 0.018 3.8E-07 44.7 4.8 37 61-97 184-221 (365)
205 PLN02209 serine carboxypeptida 95.8 0.07 1.5E-06 42.7 8.3 109 5-113 66-214 (437)
206 PLN02934 triacylglycerol lipas 95.7 0.019 4.2E-07 46.2 4.8 35 60-95 306-340 (515)
207 KOG3253 Predicted alpha/beta h 95.7 0.063 1.4E-06 44.1 7.6 103 6-116 175-291 (784)
208 COG2939 Carboxypeptidase C (ca 95.7 0.066 1.4E-06 43.0 7.5 110 6-115 100-240 (498)
209 PLN03016 sinapoylglucose-malat 95.7 0.072 1.6E-06 42.6 7.7 109 5-113 64-212 (433)
210 KOG2029 Uncharacterized conser 95.6 0.038 8.3E-07 45.2 5.9 56 57-112 505-573 (697)
211 PLN02324 triacylglycerol lipas 95.5 0.027 6E-07 44.3 4.9 36 61-96 199-235 (415)
212 PLN03037 lipase class 3 family 95.3 0.034 7.4E-07 44.9 4.8 37 60-96 299-338 (525)
213 PLN02802 triacylglycerol lipas 95.3 0.04 8.7E-07 44.4 5.2 36 62-97 315-351 (509)
214 KOG4388 Hormone-sensitive lipa 95.3 0.35 7.6E-06 39.9 10.3 96 9-111 398-508 (880)
215 PLN02753 triacylglycerol lipas 95.1 0.044 9.5E-07 44.4 4.9 36 61-96 293-332 (531)
216 PLN02847 triacylglycerol lipas 94.7 0.065 1.4E-06 44.1 5.0 24 74-97 249-272 (633)
217 KOG2385 Uncharacterized conser 94.7 0.035 7.6E-07 44.7 3.3 63 73-135 444-515 (633)
218 PLN02719 triacylglycerol lipas 94.7 0.071 1.5E-06 43.1 5.0 36 62-97 280-319 (518)
219 PF04083 Abhydro_lipase: Parti 94.5 0.036 7.8E-07 31.8 2.3 21 4-24 40-60 (63)
220 PLN02761 lipase class 3 family 94.5 0.078 1.7E-06 42.9 4.8 21 76-96 294-314 (527)
221 KOG4569 Predicted lipase [Lipi 93.8 0.14 3E-06 39.6 4.9 38 59-97 155-192 (336)
222 COG4947 Uncharacterized protei 93.8 0.27 5.9E-06 34.2 5.7 37 75-111 100-136 (227)
223 PF09949 DUF2183: Uncharacteri 93.7 1.1 2.4E-05 28.3 8.9 83 23-106 13-97 (100)
224 PLN02213 sinapoylglucose-malat 93.5 0.4 8.6E-06 36.8 6.9 78 36-113 3-98 (319)
225 KOG4540 Putative lipase essent 93.4 0.18 3.8E-06 37.9 4.6 45 64-110 264-308 (425)
226 COG5153 CVT17 Putative lipase 93.4 0.18 3.8E-06 37.9 4.6 45 64-110 264-308 (425)
227 PF05576 Peptidase_S37: PS-10 93.1 0.27 5.8E-06 38.8 5.4 105 5-112 61-170 (448)
228 KOG1551 Uncharacterized conser 92.5 0.2 4.4E-06 37.2 3.9 82 26-108 133-227 (371)
229 PF07519 Tannase: Tannase and 91.4 0.42 9.2E-06 38.7 5.0 39 74-112 113-151 (474)
230 PRK12467 peptide synthase; Pro 91.4 1.9 4.2E-05 43.8 10.1 98 8-109 3693-3793(3956)
231 PF05705 DUF829: Eukaryotic pr 91.3 4.4 9.5E-05 29.5 10.7 102 9-114 1-115 (240)
232 KOG1283 Serine carboxypeptidas 91.2 1.5 3.2E-05 33.8 7.1 111 5-116 29-171 (414)
233 KOG1282 Serine carboxypeptidas 91.0 1.8 4E-05 34.9 8.0 107 5-112 71-214 (454)
234 COG1505 Serine proteases of th 90.9 0.088 1.9E-06 43.2 0.6 90 22-111 438-535 (648)
235 COG0529 CysC Adenylylsulfate k 89.8 4.7 0.0001 28.4 8.2 75 5-82 20-101 (197)
236 COG1448 TyrB Aspartate/tyrosin 88.9 5.9 0.00013 31.2 9.0 85 7-108 171-262 (396)
237 COG4553 DepA Poly-beta-hydroxy 88.7 9.2 0.0002 29.3 12.0 107 7-117 103-215 (415)
238 KOG2521 Uncharacterized conser 88.5 4.5 9.8E-05 31.5 8.2 104 9-112 40-153 (350)
239 PF09994 DUF2235: Uncharacteri 85.8 12 0.00027 28.1 9.2 91 7-97 1-113 (277)
240 TIGR03712 acc_sec_asp2 accesso 84.0 7.3 0.00016 31.7 7.4 100 6-111 288-390 (511)
241 PF06309 Torsin: Torsin; Inte 83.5 5.6 0.00012 26.2 5.6 32 4-35 49-82 (127)
242 PF00326 Peptidase_S9: Prolyl 81.4 6.2 0.00014 27.9 5.9 64 6-72 143-209 (213)
243 cd01714 ETF_beta The electron 79.4 15 0.00033 26.2 7.2 70 28-107 70-145 (202)
244 COG2830 Uncharacterized protei 77.4 2.3 4.9E-05 29.4 2.3 103 7-135 11-117 (214)
245 PF10081 Abhydrolase_9: Alpha/ 76.6 7.3 0.00016 29.4 5.0 55 58-112 89-148 (289)
246 PRK05579 bifunctional phosphop 74.8 42 0.0009 26.8 10.0 74 7-83 116-196 (399)
247 COG1073 Hydrolases of the alph 73.8 5.2 0.00011 29.3 3.8 37 6-42 48-84 (299)
248 PF01583 APS_kinase: Adenylyls 72.3 21 0.00047 24.4 6.1 35 7-41 1-37 (156)
249 COG2240 PdxK Pyridoxal/pyridox 71.4 20 0.00044 27.1 6.2 96 13-116 11-118 (281)
250 COG1506 DAP2 Dipeptidyl aminop 70.4 22 0.00049 30.0 7.0 43 6-48 550-595 (620)
251 cd03818 GT1_ExpC_like This fam 70.2 48 0.001 25.9 8.5 34 10-45 2-35 (396)
252 PF14253 AbiH: Bacteriophage a 66.4 7.1 0.00015 28.9 3.1 22 67-88 226-247 (270)
253 TIGR03709 PPK2_rel_1 polyphosp 66.2 27 0.00059 26.2 6.0 72 5-88 53-126 (264)
254 COG3673 Uncharacterized conser 65.6 63 0.0014 25.2 8.8 94 3-96 27-142 (423)
255 PF03610 EIIA-man: PTS system 64.5 34 0.00074 21.7 8.3 76 9-96 2-78 (116)
256 KOG0781 Signal recognition par 64.2 32 0.0007 28.3 6.3 88 11-108 442-539 (587)
257 TIGR03131 malonate_mdcH malona 63.6 12 0.00026 28.1 3.9 29 66-95 67-95 (295)
258 TIGR00521 coaBC_dfp phosphopan 63.5 75 0.0016 25.3 9.3 73 8-83 113-193 (390)
259 smart00827 PKS_AT Acyl transfe 63.3 12 0.00026 28.1 3.8 28 67-95 74-101 (298)
260 TIGR03707 PPK2_P_aer polyphosp 63.3 42 0.0009 24.6 6.4 71 6-89 29-102 (230)
261 KOG2872 Uroporphyrinogen decar 60.6 51 0.0011 25.2 6.4 70 8-84 253-336 (359)
262 PF06792 UPF0261: Uncharacteri 60.3 88 0.0019 25.1 10.8 96 11-106 4-125 (403)
263 PF02230 Abhydrolase_2: Phosph 60.2 37 0.0008 24.1 5.8 56 7-70 155-213 (216)
264 PF00698 Acyl_transf_1: Acyl t 60.1 7.4 0.00016 29.7 2.2 30 65-95 74-103 (318)
265 COG0541 Ffh Signal recognition 59.9 76 0.0017 25.8 7.7 49 59-108 198-248 (451)
266 KOG2170 ATPase of the AAA+ sup 58.2 24 0.00053 27.1 4.5 33 4-36 106-140 (344)
267 TIGR00128 fabD malonyl CoA-acy 57.8 16 0.00034 27.2 3.6 29 67-95 74-102 (290)
268 COG0218 Predicted GTPase [Gene 57.8 21 0.00046 25.5 3.9 42 37-81 72-113 (200)
269 KOG3086 Predicted dioxygenase 56.1 59 0.0013 24.2 6.0 64 44-111 9-79 (296)
270 COG4850 Uncharacterized conser 55.5 98 0.0021 24.2 7.8 48 62-110 265-314 (373)
271 PF00448 SRP54: SRP54-type pro 54.9 74 0.0016 22.5 7.3 73 26-108 75-149 (196)
272 cd07207 Pat_ExoU_VipD_like Exo 54.4 26 0.00056 24.4 4.1 31 66-97 18-48 (194)
273 COG3933 Transcriptional antite 54.2 1.2E+02 0.0026 24.8 8.0 70 7-91 109-180 (470)
274 COG1752 RssA Predicted esteras 53.7 24 0.00052 26.8 4.0 32 65-97 29-60 (306)
275 PRK09936 hypothetical protein; 53.6 60 0.0013 24.8 5.9 37 12-48 25-65 (296)
276 cd07198 Patatin Patatin-like p 53.5 27 0.00059 23.9 4.0 32 66-98 17-48 (172)
277 cd00006 PTS_IIA_man PTS_IIA, P 53.0 59 0.0013 20.9 7.6 73 9-93 3-75 (122)
278 PF08484 Methyltransf_14: C-me 52.6 36 0.00077 23.4 4.4 52 58-109 50-102 (160)
279 TIGR03708 poly_P_AMP_trns poly 52.4 71 0.0015 26.4 6.6 73 5-90 37-112 (493)
280 PRK10279 hypothetical protein; 52.3 27 0.00058 26.7 4.1 31 66-97 24-54 (300)
281 PF14359 DUF4406: Domain of un 52.3 54 0.0012 20.2 6.9 69 21-99 16-87 (92)
282 TIGR03586 PseI pseudaminic aci 52.3 1.1E+02 0.0024 23.8 8.5 96 6-111 133-229 (327)
283 PF08433 KTI12: Chromatin asso 51.2 51 0.0011 24.8 5.3 73 9-81 2-76 (270)
284 cd07225 Pat_PNPLA6_PNPLA7 Pata 51.1 29 0.00063 26.5 4.1 32 65-97 33-64 (306)
285 PF14488 DUF4434: Domain of un 50.9 72 0.0016 22.0 5.7 54 19-72 18-77 (166)
286 COG3727 Vsr DNA G:T-mismatch r 49.5 47 0.001 22.2 4.2 15 26-40 100-114 (150)
287 PRK14457 ribosomal RNA large s 49.4 1.3E+02 0.0027 23.6 8.1 77 10-93 260-336 (345)
288 PF04084 ORC2: Origin recognit 49.4 79 0.0017 24.5 6.2 79 11-89 57-150 (326)
289 cd07210 Pat_hypo_W_succinogene 48.3 41 0.00089 24.3 4.4 24 74-97 26-49 (221)
290 PF04244 DPRP: Deoxyribodipyri 48.0 56 0.0012 23.8 5.0 49 22-81 50-98 (224)
291 cd07227 Pat_Fungal_NTE1 Fungal 47.6 36 0.00077 25.6 4.0 32 65-97 28-59 (269)
292 cd07209 Pat_hypo_Ecoli_Z1214_l 47.5 36 0.00078 24.4 4.0 32 66-98 17-48 (215)
293 PF03033 Glyco_transf_28: Glyc 47.3 22 0.00047 23.1 2.6 31 10-40 2-32 (139)
294 PF03976 PPK2: Polyphosphate k 47.1 18 0.00039 26.5 2.3 72 6-90 29-103 (228)
295 PF03283 PAE: Pectinacetyleste 47.0 49 0.0011 26.0 4.9 24 72-95 152-175 (361)
296 PF03853 YjeF_N: YjeF-related 46.8 36 0.00077 23.5 3.7 36 5-40 23-58 (169)
297 KOG4389 Acetylcholinesterase/B 46.8 63 0.0014 26.8 5.4 103 6-111 134-255 (601)
298 PHA02114 hypothetical protein 46.6 36 0.00077 21.4 3.2 32 10-41 85-116 (127)
299 TIGR03708 poly_P_AMP_trns poly 46.2 81 0.0018 26.1 6.1 72 5-89 296-370 (493)
300 TIGR01361 DAHP_synth_Bsub phos 46.1 1.2E+02 0.0027 22.6 7.7 96 5-109 130-231 (260)
301 cd04951 GT1_WbdM_like This fam 45.7 1.3E+02 0.0028 22.6 8.5 35 9-43 2-38 (360)
302 COG3887 Predicted signaling pr 45.2 2E+02 0.0042 24.6 9.0 104 5-111 256-378 (655)
303 TIGR01425 SRP54_euk signal rec 45.1 1.7E+02 0.0036 23.8 7.7 68 30-107 178-247 (429)
304 PRK09444 pntB pyridine nucleot 45.1 80 0.0017 25.7 5.7 44 8-51 307-354 (462)
305 KOG1252 Cystathionine beta-syn 43.9 1.6E+02 0.0034 23.2 7.1 37 6-43 210-248 (362)
306 PF02502 LacAB_rpiB: Ribose/Ga 43.8 98 0.0021 20.8 6.6 59 24-90 15-73 (140)
307 TIGR03569 NeuB_NnaB N-acetylne 43.4 1.6E+02 0.0034 23.0 7.6 96 6-111 132-230 (329)
308 cd07205 Pat_PNPLA6_PNPLA7_NTE1 42.8 60 0.0013 22.2 4.4 30 67-97 20-49 (175)
309 cd07228 Pat_NTE_like_bacteria 42.8 50 0.0011 22.7 4.0 23 75-97 27-49 (175)
310 PRK11460 putative hydrolase; P 42.4 1E+02 0.0022 22.3 5.7 41 6-46 147-190 (232)
311 TIGR00632 vsr DNA mismatch end 42.1 56 0.0012 21.3 3.8 15 26-40 99-113 (117)
312 PF10686 DUF2493: Protein of u 42.0 37 0.00081 19.8 2.7 30 7-39 31-62 (71)
313 PF10561 UPF0565: Uncharacteri 41.6 32 0.00068 26.4 2.9 53 75-127 192-263 (303)
314 PRK00726 murG undecaprenyldiph 41.4 1.4E+02 0.0031 22.8 6.7 34 9-42 4-37 (357)
315 TIGR00689 rpiB_lacA_lacB sugar 40.8 1.1E+02 0.0025 20.6 7.3 59 24-90 14-72 (144)
316 PF06415 iPGM_N: BPG-independe 40.5 1.1E+02 0.0024 22.4 5.4 62 18-83 43-104 (223)
317 COG2326 Uncharacterized conser 40.3 1.2E+02 0.0027 22.7 5.7 68 5-85 71-141 (270)
318 cd07212 Pat_PNPLA9 Patatin-lik 39.6 28 0.0006 26.7 2.5 20 78-97 34-53 (312)
319 COG1282 PntB NAD/NADP transhyd 39.5 1.7E+02 0.0037 23.4 6.5 45 6-50 307-355 (463)
320 PRK02399 hypothetical protein; 39.0 2.1E+02 0.0045 23.1 11.0 96 11-106 6-127 (406)
321 cd06570 GH20_chitobiase-like_1 38.8 1E+02 0.0022 23.7 5.4 31 18-48 65-96 (311)
322 PRK05571 ribose-5-phosphate is 38.5 1.3E+02 0.0027 20.5 7.2 60 24-90 16-75 (148)
323 PF00091 Tubulin: Tubulin/FtsZ 38.0 1E+02 0.0022 22.1 5.1 48 62-110 111-166 (216)
324 PF14606 Lipase_GDSL_3: GDSL-l 37.9 1.1E+02 0.0023 21.6 4.9 13 34-46 33-45 (178)
325 PRK08622 galactose-6-phosphate 37.8 1.4E+02 0.0031 20.9 7.2 59 24-90 16-74 (171)
326 PLN02410 UDP-glucoronosyl/UDP- 37.8 82 0.0018 25.6 5.0 41 1-41 1-42 (451)
327 PRK06490 glutamine amidotransf 37.6 1.6E+02 0.0036 21.5 8.1 84 7-94 8-103 (239)
328 PLN02748 tRNA dimethylallyltra 36.9 2.2E+02 0.0047 23.5 7.1 75 6-82 20-118 (468)
329 PRK09273 hypothetical protein; 36.4 1.7E+02 0.0036 21.3 7.3 63 22-90 18-80 (211)
330 TIGR02816 pfaB_fam PfaB family 36.2 52 0.0011 27.5 3.6 30 67-97 256-286 (538)
331 PF12112 DUF3579: Protein of u 36.1 34 0.00074 21.2 2.0 36 6-42 3-40 (92)
332 COG1926 Predicted phosphoribos 35.9 1.5E+02 0.0032 21.6 5.4 48 58-105 7-55 (220)
333 TIGR01120 rpiB ribose 5-phosph 35.5 1.4E+02 0.003 20.1 7.4 59 24-90 15-73 (143)
334 PF09370 TIM-br_sig_trns: TIM- 35.4 73 0.0016 24.0 3.9 80 26-108 162-247 (268)
335 TIGR01119 lacB galactose-6-pho 35.0 1.6E+02 0.0034 20.6 7.2 59 24-90 16-74 (171)
336 cd07208 Pat_hypo_Ecoli_yjju_li 34.3 78 0.0017 23.4 4.1 22 77-98 28-49 (266)
337 PRK00091 miaA tRNA delta(2)-is 34.2 2.2E+02 0.0047 21.9 6.6 73 7-81 3-99 (307)
338 PF06792 UPF0261: Uncharacteri 34.2 1.1E+02 0.0024 24.5 5.0 43 6-48 183-225 (403)
339 cd07025 Peptidase_S66 LD-Carbo 33.6 2.1E+02 0.0045 21.6 7.3 55 12-70 4-59 (282)
340 PRK05282 (alpha)-aspartyl dipe 33.5 1.9E+02 0.0042 21.2 6.4 87 6-93 30-129 (233)
341 cd03784 GT1_Gtf_like This fami 33.3 82 0.0018 24.6 4.3 34 8-41 2-35 (401)
342 COG0279 GmhA Phosphoheptose is 33.3 56 0.0012 22.8 2.8 74 10-88 43-121 (176)
343 PLN02840 tRNA dimethylallyltra 33.1 2.7E+02 0.0058 22.6 7.3 75 6-82 19-117 (421)
344 COG1092 Predicted SAM-dependen 33.0 1.7E+02 0.0036 23.5 5.8 56 26-84 280-337 (393)
345 PRK02399 hypothetical protein; 33.0 1.3E+02 0.0029 24.1 5.2 43 6-48 184-226 (406)
346 PF05724 TPMT: Thiopurine S-me 32.9 1.1E+02 0.0023 22.2 4.5 31 7-42 37-67 (218)
347 PRK08621 galactose-6-phosphate 32.4 1.6E+02 0.0035 19.9 6.2 56 24-89 16-71 (142)
348 KOG1969 DNA replication checkp 32.4 3.5E+02 0.0075 24.0 7.7 32 9-42 327-359 (877)
349 PRK13938 phosphoheptose isomer 32.3 1.5E+02 0.0033 21.0 5.1 26 73-98 43-68 (196)
350 PRK14974 cell division protein 32.2 2.5E+02 0.0053 22.0 8.1 70 29-108 217-288 (336)
351 COG0331 FabD (acyl-carrier-pro 32.1 61 0.0013 25.0 3.2 22 74-95 83-104 (310)
352 PF03808 Glyco_tran_WecB: Glyc 31.6 1.7E+02 0.0038 20.1 5.9 48 60-111 88-137 (172)
353 PLN02735 carbamoyl-phosphate s 31.4 2.1E+02 0.0045 26.5 6.8 69 24-96 598-668 (1102)
354 PRK11168 glpC sn-glycerol-3-ph 31.3 2.6E+02 0.0056 22.0 7.4 64 7-70 161-227 (396)
355 PF13207 AAA_17: AAA domain; P 30.9 1.1E+02 0.0024 19.1 3.9 31 10-42 1-32 (121)
356 PF01075 Glyco_transf_9: Glyco 30.6 83 0.0018 22.7 3.7 35 6-40 104-143 (247)
357 PRK14456 ribosomal RNA large s 30.1 2.8E+02 0.0061 22.0 7.5 77 10-93 283-359 (368)
358 cd07230 Pat_TGL4-5_like Triacy 30.1 60 0.0013 26.2 3.0 25 75-99 100-124 (421)
359 PRK14729 miaA tRNA delta(2)-is 29.9 2.6E+02 0.0056 21.5 7.8 72 9-82 5-99 (300)
360 PTZ00215 ribose 5-phosphate is 29.9 1.8E+02 0.004 19.8 7.2 59 24-90 18-78 (151)
361 PLN02555 limonoid glucosyltran 29.7 1.4E+02 0.003 24.6 5.1 40 1-40 1-41 (480)
362 PRK05665 amidotransferase; Pro 29.7 81 0.0018 23.2 3.5 37 57-94 72-108 (240)
363 PLN03050 pyridoxine (pyridoxam 29.2 1.4E+02 0.0031 22.0 4.7 34 8-41 61-94 (246)
364 PRK14194 bifunctional 5,10-met 29.1 1.2E+02 0.0026 23.3 4.3 34 64-97 145-183 (301)
365 PRK06193 hypothetical protein; 29.0 1.1E+02 0.0024 22.0 4.0 29 57-85 136-165 (206)
366 PLN02752 [acyl-carrier protein 28.9 47 0.001 25.7 2.2 18 78-95 126-143 (343)
367 PF03205 MobB: Molybdopterin g 28.9 1.4E+02 0.0031 19.8 4.3 40 9-48 1-42 (140)
368 COG1066 Sms Predicted ATP-depe 28.9 3.1E+02 0.0068 22.4 6.6 60 23-84 157-219 (456)
369 PF00148 Oxidored_nitro: Nitro 28.8 1.9E+02 0.0042 22.7 5.7 62 20-86 90-156 (398)
370 PF08386 Abhydrolase_4: TAP-li 28.7 1.5E+02 0.0033 18.4 4.9 42 7-48 34-76 (103)
371 cd05009 SIS_GlmS_GlmD_2 SIS (S 28.4 1.3E+02 0.0029 19.6 4.2 38 6-43 61-98 (153)
372 TIGR03702 lip_kinase_YegS lipi 28.2 2.6E+02 0.0057 21.0 6.4 31 9-39 2-32 (293)
373 PRK11613 folP dihydropteroate 28.0 2.7E+02 0.0059 21.2 7.0 57 24-89 166-224 (282)
374 PF01734 Patatin: Patatin-like 27.8 62 0.0013 21.7 2.5 23 74-96 25-47 (204)
375 PRK13256 thiopurine S-methyltr 27.7 79 0.0017 23.1 3.1 29 10-43 46-74 (226)
376 TIGR03127 RuMP_HxlB 6-phospho 27.6 1.4E+02 0.003 20.5 4.2 33 65-97 20-52 (179)
377 PF01118 Semialdhyde_dh: Semia 27.6 1.4E+02 0.0029 19.1 3.9 31 77-108 1-32 (121)
378 KOG4231 Intracellular membrane 27.5 70 0.0015 26.7 2.9 53 32-97 414-471 (763)
379 PRK02842 light-independent pro 27.5 2.7E+02 0.0058 22.4 6.3 76 7-87 97-178 (427)
380 cd07229 Pat_TGL3_like Triacylg 27.4 1.1E+02 0.0024 24.4 4.0 25 74-98 109-133 (391)
381 PRK06849 hypothetical protein; 27.1 3.1E+02 0.0067 21.5 7.2 59 24-84 18-85 (389)
382 PF06838 Met_gamma_lyase: Meth 27.0 3.3E+02 0.0072 21.8 6.4 63 19-88 140-202 (403)
383 PRK06731 flhF flagellar biosyn 27.0 2.8E+02 0.006 20.9 8.5 72 27-108 146-220 (270)
384 cd07211 Pat_PNPLA8 Patatin-lik 26.7 58 0.0013 24.7 2.4 17 79-95 44-60 (308)
385 cd03805 GT1_ALG2_like This fam 26.6 1.1E+02 0.0023 23.6 3.9 32 10-41 3-37 (392)
386 PLN02204 diacylglycerol kinase 26.5 4.1E+02 0.009 22.7 7.4 36 4-39 157-195 (601)
387 COG3340 PepE Peptidase E [Amin 26.5 2.4E+02 0.0051 20.7 5.1 36 7-42 32-70 (224)
388 PF01972 SDH_sah: Serine dehyd 26.4 3E+02 0.0064 21.0 8.1 78 26-104 39-124 (285)
389 TIGR01118 lacA galactose-6-pho 26.3 2.1E+02 0.0046 19.3 6.5 56 24-89 16-71 (141)
390 cd07232 Pat_PLPL Patain-like p 26.3 1.2E+02 0.0025 24.4 4.0 28 74-101 93-120 (407)
391 PRK12615 galactose-6-phosphate 26.3 2.3E+02 0.0051 19.8 7.1 59 24-90 16-74 (171)
392 TIGR02113 coaC_strep phosphopa 26.2 2.3E+02 0.005 19.7 5.9 37 6-42 111-150 (177)
393 PRK14188 bifunctional 5,10-met 26.2 1.5E+02 0.0034 22.6 4.5 34 63-96 143-181 (296)
394 PRK10964 ADP-heptose:LPS hepto 26.1 1.6E+02 0.0035 22.3 4.7 33 7-39 178-215 (322)
395 cd07224 Pat_like Patatin-like 25.6 1.4E+02 0.003 21.8 4.1 22 77-98 30-51 (233)
396 cd01406 SIR2-like Sir2-like: P 25.6 99 0.0021 22.5 3.3 30 65-94 169-198 (242)
397 cd01819 Patatin_and_cPLA2 Pata 25.5 1.4E+02 0.003 20.1 3.8 19 76-94 28-46 (155)
398 TIGR03379 glycerol3P_GlpC glyc 25.5 3.4E+02 0.0074 21.4 7.8 63 8-70 162-228 (397)
399 COG2820 Udp Uridine phosphoryl 25.5 1.5E+02 0.0032 22.0 4.1 32 5-38 56-87 (248)
400 COG1763 MobB Molybdopterin-gua 25.5 1.8E+02 0.0039 20.1 4.3 38 9-46 3-42 (161)
401 PF01012 ETF: Electron transfe 25.5 2.2E+02 0.0047 19.2 6.0 63 26-98 50-114 (164)
402 cd03816 GT1_ALG1_like This fam 25.3 1.8E+02 0.0039 23.1 5.0 41 6-46 3-43 (415)
403 TIGR00322 diphth2_R diphthamid 25.0 2.2E+02 0.0048 22.2 5.2 57 24-93 8-65 (332)
404 cd00842 MPP_ASMase acid sphing 24.9 1.8E+02 0.0039 21.7 4.7 26 58-83 195-221 (296)
405 PRK14179 bifunctional 5,10-met 24.8 1.5E+02 0.0032 22.6 4.1 34 64-97 144-182 (284)
406 PF00070 Pyr_redox: Pyridine n 24.6 1.5E+02 0.0033 17.1 3.5 12 77-88 1-12 (80)
407 PF00289 CPSase_L_chain: Carba 24.5 61 0.0013 20.6 1.8 14 24-37 64-77 (110)
408 cd07231 Pat_SDP1-like Sugar-De 24.5 1.4E+02 0.0031 23.2 4.0 23 74-96 94-116 (323)
409 COG0859 RfaF ADP-heptose:LPS h 24.4 1.7E+02 0.0037 22.5 4.6 35 7-41 175-215 (334)
410 PF04816 DUF633: Family of unk 24.2 95 0.0021 22.3 2.9 33 75-110 67-102 (205)
411 cd07213 Pat17_PNPLA8_PNPLA9_li 24.1 78 0.0017 23.8 2.6 20 78-97 36-55 (288)
412 COG4874 Uncharacterized protei 24.0 1.7E+02 0.0036 21.9 4.1 27 23-49 59-85 (318)
413 PRK07933 thymidylate kinase; V 24.0 2.6E+02 0.0056 20.0 5.2 38 10-47 2-41 (213)
414 cd05005 SIS_PHI Hexulose-6-pho 23.9 1.6E+02 0.0036 20.1 4.0 33 65-97 23-55 (179)
415 COG4100 Cystathionine beta-lya 23.7 3.6E+02 0.0078 21.1 6.1 61 22-89 154-214 (416)
416 PF12242 Eno-Rase_NADH_b: NAD( 23.7 1.8E+02 0.0038 17.5 4.3 41 57-97 18-61 (78)
417 cd07217 Pat17_PNPLA8_PNPLA9_li 23.6 79 0.0017 24.7 2.6 18 79-96 44-61 (344)
418 PRK03846 adenylylsulfate kinas 23.6 2.2E+02 0.0048 19.9 4.7 37 5-41 21-59 (198)
419 cd01477 vWA_F09G8-8_type VWA F 23.5 2.1E+02 0.0045 20.2 4.6 34 9-42 135-169 (193)
420 PF01656 CbiA: CobQ/CobB/MinD/ 23.4 1.8E+02 0.0039 19.8 4.2 33 11-43 2-36 (195)
421 KOG1209 1-Acyl dihydroxyaceton 23.3 2.1E+02 0.0046 21.2 4.4 37 6-43 5-41 (289)
422 PF13439 Glyco_transf_4: Glyco 23.3 63 0.0014 21.2 1.8 27 17-43 12-38 (177)
423 COG2376 DAK1 Dihydroxyacetone 23.1 2.1E+02 0.0045 22.3 4.7 33 7-39 248-285 (323)
424 COG2201 CheB Chemotaxis respon 23.0 1.2E+02 0.0025 23.9 3.4 34 75-108 156-190 (350)
425 cd00423 Pterin_binding Pterin 23.0 3.2E+02 0.0069 20.2 6.5 24 23-47 152-177 (258)
426 PF03721 UDPG_MGDP_dh_N: UDP-g 22.9 1.4E+02 0.003 20.9 3.5 30 11-43 3-32 (185)
427 PRK07313 phosphopantothenoylcy 22.9 2.7E+02 0.006 19.4 7.0 62 6-70 112-179 (182)
428 COG0813 DeoD Purine-nucleoside 22.8 2E+02 0.0044 21.1 4.2 38 74-111 54-93 (236)
429 cd06564 GH20_DspB_LnbB-like Gl 22.7 3.6E+02 0.0078 20.7 6.0 30 19-48 80-110 (326)
430 cd04962 GT1_like_5 This family 22.6 1.6E+02 0.0035 22.3 4.2 34 9-42 4-37 (371)
431 PRK12613 galactose-6-phosphate 22.6 2.5E+02 0.0055 18.9 6.5 56 24-90 16-71 (141)
432 cd07206 Pat_TGL3-4-5_SDP1 Tria 22.6 1.5E+02 0.0032 22.8 3.8 22 75-96 96-117 (298)
433 KOG0736 Peroxisome assembly fa 22.6 5.6E+02 0.012 23.0 7.4 90 35-130 765-861 (953)
434 PF03698 UPF0180: Uncharacteri 22.4 1.1E+02 0.0024 18.4 2.5 19 23-41 10-28 (80)
435 PF07521 RMMBL: RNA-metabolisi 22.3 81 0.0018 16.2 1.7 9 7-15 32-40 (43)
436 PRK03094 hypothetical protein; 22.2 1.2E+02 0.0026 18.3 2.6 19 23-41 10-28 (80)
437 PRK06696 uridine kinase; Valid 22.1 3E+02 0.0064 19.7 5.2 36 5-40 19-56 (223)
438 PRK01710 murD UDP-N-acetylmura 22.1 2.1E+02 0.0046 23.1 4.9 35 63-98 3-37 (458)
439 cd07204 Pat_PNPLA_like Patatin 22.1 1.8E+02 0.004 21.3 4.2 21 78-98 33-53 (243)
440 cd00401 AdoHcyase S-adenosyl-L 22.0 4.3E+02 0.0093 21.4 6.9 43 57-102 95-137 (413)
441 PRK13398 3-deoxy-7-phosphohept 21.9 3.5E+02 0.0076 20.3 10.7 97 5-111 132-235 (266)
442 PRK14581 hmsF outer membrane N 21.7 1.4E+02 0.0031 25.8 3.8 37 5-41 46-92 (672)
443 KOG1532 GTPase XAB1, interacts 21.6 1.6E+02 0.0034 22.7 3.6 36 5-40 16-53 (366)
444 PLN02496 probable phosphopanto 21.6 3.2E+02 0.007 19.8 6.8 63 7-71 132-199 (209)
445 PF02882 THF_DHG_CYH_C: Tetrah 21.5 2.5E+02 0.0055 19.2 4.5 34 63-96 21-59 (160)
446 PRK13982 bifunctional SbtC-lik 21.3 4.8E+02 0.01 21.6 9.3 61 7-69 180-246 (475)
447 PF07555 NAGidase: beta-N-acet 21.3 3.9E+02 0.0085 20.6 6.9 75 12-90 3-83 (306)
448 KOG2486 Predicted GTPase [Gene 21.2 2.7E+02 0.0057 21.5 4.7 62 34-97 182-247 (320)
449 TIGR00176 mobB molybdopterin-g 21.0 2.3E+02 0.0051 19.1 4.2 36 11-46 2-39 (155)
450 TIGR02133 RPI_actino ribose 5- 21.0 2.8E+02 0.0061 18.8 5.3 57 24-87 16-72 (148)
451 KOG3062 RNA polymerase II elon 20.9 3.7E+02 0.008 20.1 7.9 39 9-47 2-44 (281)
452 PF13241 NAD_binding_7: Putati 20.9 1.7E+02 0.0037 18.0 3.3 35 74-111 6-40 (103)
453 TIGR02363 dhaK1 dihydroxyaceto 20.9 3.1E+02 0.0067 21.4 5.2 36 5-40 251-291 (329)
454 cd00286 Tubulin_FtsZ Tubulin/F 20.9 3.9E+02 0.0085 20.5 6.0 23 64-87 78-100 (328)
455 PF02670 DXP_reductoisom: 1-de 20.8 2.2E+02 0.0047 18.8 3.9 18 87-104 11-28 (129)
456 PF02233 PNTB: NAD(P) transhyd 20.7 1.4E+02 0.003 24.5 3.4 43 8-50 308-354 (463)
457 cd06562 GH20_HexA_HexB-like Be 20.6 90 0.0019 24.4 2.4 30 19-48 68-98 (348)
458 COG3007 Uncharacterized paraqu 20.6 2.8E+02 0.0061 21.5 4.8 56 56-111 18-79 (398)
459 PF04763 DUF562: Protein of un 20.5 2.8E+02 0.0061 18.7 4.4 33 6-38 16-52 (146)
460 COG4598 HisP ABC-type histidin 20.5 3.4E+02 0.0074 19.6 5.7 57 19-86 156-213 (256)
461 PF14252 DUF4347: Domain of un 20.5 2.2E+02 0.0047 19.7 4.0 51 21-87 10-60 (165)
462 PRK13397 3-deoxy-7-phosphohept 20.5 3.7E+02 0.0081 20.1 7.8 41 5-45 120-160 (250)
463 PF08496 Peptidase_S49_N: Pept 20.4 2.4E+02 0.0053 19.3 4.2 49 34-89 97-145 (155)
464 COG0698 RpiB Ribose 5-phosphat 20.4 3E+02 0.0064 18.9 7.3 61 24-91 16-76 (151)
465 cd01523 RHOD_Lact_B Member of 20.4 1.9E+02 0.004 17.4 3.4 13 25-37 76-88 (100)
466 PRK11557 putative DNA-binding 20.3 2E+02 0.0043 21.3 4.1 33 65-97 118-150 (278)
467 PRK04148 hypothetical protein; 20.2 2.8E+02 0.006 18.5 5.0 23 74-96 16-38 (134)
468 PF09757 Arb2: Arb2 domain; I 20.1 34 0.00075 23.8 0.0 38 5-43 97-148 (178)
469 cd07216 Pat17_PNPLA8_PNPLA9_li 20.1 78 0.0017 24.1 1.9 17 79-95 45-61 (309)
470 PF01494 FAD_binding_3: FAD bi 20.1 1.8E+02 0.0039 21.8 3.9 22 77-98 3-24 (356)
471 PF07283 TrbH: Conjugal transf 20.0 1.2E+02 0.0025 19.9 2.4 23 23-45 38-60 (121)
No 1
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.91 E-value=4.8e-23 Score=153.25 Aligned_cols=114 Identities=44% Similarity=0.872 Sum_probs=98.7
Q ss_pred ccccCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEE
Q 030815 2 AEAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIV 81 (171)
Q Consensus 2 ~~~~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lv 81 (171)
+.++++|+|||+||++.+.+.|..+++.|.+.||+|+++|+||||.|........+++++++++.++++.+...++++||
T Consensus 13 ~~~~~~p~vvliHG~~~~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i~~l~~~~~v~lv 92 (273)
T PLN02211 13 KPNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSLPENEKVILV 92 (273)
T ss_pred cccCCCCeEEEECCCCCCcCcHHHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 34466789999999999999999999999888999999999999987554433468999999999999988435899999
Q ss_pred EeChhHHHHHHHHHhCCcceeEEEEeccccCCCC
Q 030815 82 GHSLGGLSLALAAEKFPHKISVAIFLTAFMPDTK 115 (171)
Q Consensus 82 G~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (171)
||||||.++..++.++|++++++|++++.....+
T Consensus 93 GhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g 126 (273)
T PLN02211 93 GHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLG 126 (273)
T ss_pred EECchHHHHHHHHHhChhheeEEEEeccccCCCC
Confidence 9999999999999999999999999988665433
No 2
>PLN02965 Probable pheophorbidase
Probab=99.90 E-value=1.8e-22 Score=148.68 Aligned_cols=104 Identities=49% Similarity=0.867 Sum_probs=93.6
Q ss_pred CeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCC-CcEEEEEeChh
Q 030815 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSAD-EKVVIVGHSLG 86 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~lvG~S~G 86 (171)
..|||+||++.+...|+.+++.|.+.||+|+++|+||||.|..+....++++++++++.++++.+ +. ++++++|||||
T Consensus 4 ~~vvllHG~~~~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l-~~~~~~~lvGhSmG 82 (255)
T PLN02965 4 IHFVFVHGASHGAWCWYKLATLLDAAGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDL-PPDHKVILVGHSIG 82 (255)
T ss_pred eEEEEECCCCCCcCcHHHHHHHHhhCCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhc-CCCCCEEEEecCcc
Confidence 35999999999999999999999877899999999999999765434568999999999999998 44 59999999999
Q ss_pred HHHHHHHHHhCCcceeEEEEeccccC
Q 030815 87 GLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 87 g~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
|.++..++.++|++|+++|++++...
T Consensus 83 G~ia~~~a~~~p~~v~~lvl~~~~~~ 108 (255)
T PLN02965 83 GGSVTEALCKFTDKISMAIYVAAAMV 108 (255)
T ss_pred hHHHHHHHHhCchheeEEEEEccccC
Confidence 99999999999999999999998654
No 3
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.88 E-value=1.2e-21 Score=147.51 Aligned_cols=106 Identities=25% Similarity=0.322 Sum_probs=95.3
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCcccc-ccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQ-DVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
.+++|||+||++.+...|..+++.|.+.||+|+++|+||||.|..+.. ..++++++++++.++++++ +.++++++|||
T Consensus 45 ~~~~lvliHG~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l-~~~~v~lvGhS 123 (302)
T PRK00870 45 DGPPVLLLHGEPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL-DLTDVTLVCQD 123 (302)
T ss_pred CCCEEEEECCCCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc-CCCCEEEEEEC
Confidence 368999999999999999999999987799999999999999976532 2468999999999999998 67899999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
|||.++..++.++|+++.++|++++..+
T Consensus 124 ~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 151 (302)
T PRK00870 124 WGGLIGLRLAAEHPDRFARLVVANTGLP 151 (302)
T ss_pred hHHHHHHHHHHhChhheeEEEEeCCCCC
Confidence 9999999999999999999999987543
No 4
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.88 E-value=8e-22 Score=147.90 Aligned_cols=104 Identities=26% Similarity=0.380 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccc------cccccHHHhHHHHHHHHHhcCCCCcEE
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKI------QDVHSFYEYNEPLLEILASLSADEKVV 79 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~ 79 (171)
.+++|||+||++++...|..+++.|.+. ++|+++|+||+|.|..+. ...++++++++++.++++.+ ..++++
T Consensus 28 ~~~~vlllHG~~~~~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l-~~~~~~ 105 (294)
T PLN02824 28 SGPALVLVHGFGGNADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDV-VGDPAF 105 (294)
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHHh-cCCCeE
Confidence 3589999999999999999999999886 899999999999997653 13468999999999999999 679999
Q ss_pred EEEeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 80 IVGHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 80 lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
|+||||||.+++.++.++|++++++|++++..
T Consensus 106 lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~ 137 (294)
T PLN02824 106 VICNSVGGVVGLQAAVDAPELVRGVMLINISL 137 (294)
T ss_pred EEEeCHHHHHHHHHHHhChhheeEEEEECCCc
Confidence 99999999999999999999999999999764
No 5
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.87 E-value=1.3e-21 Score=145.53 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=94.0
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSL 85 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~ 85 (171)
++++|||+||++++...|..+++.|.+ +|+|+++|+||||.|..+. ..++.+++++++.++++.+ +.++++|+||||
T Consensus 24 ~~~plvllHG~~~~~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~-~~~~~~~~~~~~~~~i~~l-~~~~~~LvG~S~ 100 (276)
T TIGR02240 24 GLTPLLIFNGIGANLELVFPFIEALDP-DLEVIAFDVPGVGGSSTPR-HPYRFPGLAKLAARMLDYL-DYGQVNAIGVSW 100 (276)
T ss_pred CCCcEEEEeCCCcchHHHHHHHHHhcc-CceEEEECCCCCCCCCCCC-CcCcHHHHHHHHHHHHHHh-CcCceEEEEECH
Confidence 347999999999999999999999976 5999999999999997654 3468999999999999999 678999999999
Q ss_pred hHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 86 GGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 86 Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
||.+++.++.++|++++++|++++...
T Consensus 101 GG~va~~~a~~~p~~v~~lvl~~~~~~ 127 (276)
T TIGR02240 101 GGALAQQFAHDYPERCKKLILAATAAG 127 (276)
T ss_pred HHHHHHHHHHHCHHHhhheEEeccCCc
Confidence 999999999999999999999998753
No 6
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.87 E-value=3.5e-21 Score=144.49 Aligned_cols=104 Identities=24% Similarity=0.340 Sum_probs=95.3
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
+.+++|||+||++++...|+.+++.|.+. ++|+++|+||+|.|+.+.. .++.+++++++..+++.+ +.++++++|||
T Consensus 25 G~g~~vvllHG~~~~~~~w~~~~~~L~~~-~~via~D~~G~G~S~~~~~-~~~~~~~a~dl~~ll~~l-~~~~~~lvGhS 101 (295)
T PRK03592 25 GEGDPIVFLHGNPTSSYLWRNIIPHLAGL-GRCLAPDLIGMGASDKPDI-DYTFADHARYLDAWFDAL-GLDDVVLVGHD 101 (295)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhhC-CEEEEEcCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHh-CCCCeEEEEEC
Confidence 45789999999999999999999999887 6999999999999987653 468999999999999999 77899999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
|||.+++.++.++|++++++|++++..
T Consensus 102 ~Gg~ia~~~a~~~p~~v~~lil~~~~~ 128 (295)
T PRK03592 102 WGSALGFDWAARHPDRVRGIAFMEAIV 128 (295)
T ss_pred HHHHHHHHHHHhChhheeEEEEECCCC
Confidence 999999999999999999999999744
No 7
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.86 E-value=1.2e-20 Score=134.42 Aligned_cols=101 Identities=31% Similarity=0.503 Sum_probs=91.8
Q ss_pred EEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCcccc-ccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHH
Q 030815 10 FVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQ-DVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGL 88 (171)
Q Consensus 10 vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~ 88 (171)
|||+||++++...|..+++.|+ +||+|+++|+||+|.|..... ...+.+++++++.++++.+ ..++++++|||+||.
T Consensus 1 vv~~hG~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lvG~S~Gg~ 78 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDPLAEALA-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDAL-GIKKVILVGHSMGGM 78 (228)
T ss_dssp EEEE-STTTTGGGGHHHHHHHH-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHT-TTSSEEEEEETHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHh-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccc-ccccccccccccccc
Confidence 7999999999999999999995 699999999999999987653 3468999999999999999 668999999999999
Q ss_pred HHHHHHHhCCcceeEEEEeccccC
Q 030815 89 SLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 89 ~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
+++.++.++|++++++|++++...
T Consensus 79 ~a~~~a~~~p~~v~~~vl~~~~~~ 102 (228)
T PF12697_consen 79 IALRLAARYPDRVKGLVLLSPPPP 102 (228)
T ss_dssp HHHHHHHHSGGGEEEEEEESESSS
T ss_pred cccccccccccccccceeeccccc
Confidence 999999999999999999998874
No 8
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.86 E-value=6.4e-21 Score=146.40 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=91.5
Q ss_pred CCCeEEEEcCCCCCchh-HHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC-----CCCcEE
Q 030815 6 KQKHFVLVHGSNHGAWC-WYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS-----ADEKVV 79 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~-~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~ 79 (171)
.+++|||+||++++... |+.+++.|.+.||+|+++|+||||.|........+++++++++.++++.+. ...+++
T Consensus 86 ~~~~iv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~ 165 (349)
T PLN02385 86 PKAAVCFCHGYGDTCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSF 165 (349)
T ss_pred CCeEEEEECCCCCccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 45789999999988654 688999998889999999999999997654334588899999998887762 234799
Q ss_pred EEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 80 IVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 80 lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
|+||||||.+++.++.++|++++++|+++|...
T Consensus 166 LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~ 198 (349)
T PLN02385 166 LFGQSMGGAVALKVHLKQPNAWDGAILVAPMCK 198 (349)
T ss_pred EEEeccchHHHHHHHHhCcchhhheeEeccccc
Confidence 999999999999999999999999999998754
No 9
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.85 E-value=1.1e-20 Score=145.72 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSL 85 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~ 85 (171)
.+++|||+||++++...|..+++.|.+ +|+|+.+|+||||.|..+....++++++++++.++++.+ ..++++|+||||
T Consensus 87 ~gp~lvllHG~~~~~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~l~~l-~~~~~~lvGhS~ 164 (360)
T PLN02679 87 SGPPVLLVHGFGASIPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPPGFSYTMETWAELILDFLEEV-VQKPTVLIGNSV 164 (360)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCCCccccHHHHHHHHHHHHHHh-cCCCeEEEEECH
Confidence 348999999999999999999999977 699999999999999876434568999999999999998 678999999999
Q ss_pred hHHHHHHHHH-hCCcceeEEEEecccc
Q 030815 86 GGLSLALAAE-KFPHKISVAIFLTAFM 111 (171)
Q Consensus 86 Gg~~a~~~~~-~~~~~~~~~v~~~~~~ 111 (171)
||.+++.++. .+|++|+++|++++..
T Consensus 165 Gg~ia~~~a~~~~P~rV~~LVLi~~~~ 191 (360)
T PLN02679 165 GSLACVIAASESTRDLVRGLVLLNCAG 191 (360)
T ss_pred HHHHHHHHHHhcChhhcCEEEEECCcc
Confidence 9999998886 4799999999999764
No 10
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.85 E-value=1.5e-20 Score=137.04 Aligned_cols=100 Identities=21% Similarity=0.121 Sum_probs=89.6
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChh
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLG 86 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~G 86 (171)
+|+|||+||++++...|+.+++.| + +|+|+++|+||+|.|..+.. .+++++++++.++++.+ +.++++++|||||
T Consensus 2 ~p~vvllHG~~~~~~~w~~~~~~l-~-~~~vi~~D~~G~G~S~~~~~--~~~~~~~~~l~~~l~~~-~~~~~~lvG~S~G 76 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQPVGEAL-P-DYPRLYIDLPGHGGSAAISV--DGFADVSRLLSQTLQSY-NILPYWLVGYSLG 76 (242)
T ss_pred CCEEEEECCCCCChHHHHHHHHHc-C-CCCEEEecCCCCCCCCCccc--cCHHHHHHHHHHHHHHc-CCCCeEEEEECHH
Confidence 578999999999999999999998 4 69999999999999976553 38999999999999998 7789999999999
Q ss_pred HHHHHHHHHhCCcc-eeEEEEecccc
Q 030815 87 GLSLALAAEKFPHK-ISVAIFLTAFM 111 (171)
Q Consensus 87 g~~a~~~~~~~~~~-~~~~v~~~~~~ 111 (171)
|.+++.++.++++. ++++|++++..
T Consensus 77 g~va~~~a~~~~~~~v~~lvl~~~~~ 102 (242)
T PRK11126 77 GRIAMYYACQGLAGGLCGLIVEGGNP 102 (242)
T ss_pred HHHHHHHHHhCCcccccEEEEeCCCC
Confidence 99999999999664 99999887654
No 11
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.85 E-value=1.5e-20 Score=137.18 Aligned_cols=106 Identities=22% Similarity=0.317 Sum_probs=95.2
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
.++|+||++||++++...|..+++.|.+ +|+|+++|+||+|.|.......++.+++++++.++++.+ +..+++++|||
T Consensus 11 ~~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~G~S 88 (257)
T TIGR03611 11 ADAPVVVLSSGLGGSGSYWAPQLDVLTQ-RFHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDAL-NIERFHFVGHA 88 (257)
T ss_pred CCCCEEEEEcCCCcchhHHHHHHHHHHh-ccEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHHh-CCCcEEEEEec
Confidence 3578999999999999999999998876 699999999999999766545578999999999999998 67889999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
|||.+++.++.++|++++++|+++++..
T Consensus 89 ~Gg~~a~~~a~~~~~~v~~~i~~~~~~~ 116 (257)
T TIGR03611 89 LGGLIGLQLALRYPERLLSLVLINAWSR 116 (257)
T ss_pred hhHHHHHHHHHHChHHhHHheeecCCCC
Confidence 9999999999999999999999997654
No 12
>PHA02857 monoglyceride lipase; Provisional
Probab=99.85 E-value=2.6e-20 Score=138.47 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=90.2
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc---CCCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL---SADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~lvG 82 (171)
.++.|+++||++.+...|..+++.|.+.||+|+++|+||||.|........++.++++++.+.++.+ ....+++++|
T Consensus 24 ~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~lvG 103 (276)
T PHA02857 24 PKALVFISHGAGEHSGRYEELAENISSLGILVFSHDHIGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTYPGVPVFLLG 103 (276)
T ss_pred CCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccCCCCCCCCCccCCcCCHHHHHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 3456777799999999999999999999999999999999999764433346677778887777654 1346899999
Q ss_pred eChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 83 HSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
|||||.+++.++.++|++++++|+++|...
T Consensus 104 ~S~GG~ia~~~a~~~p~~i~~lil~~p~~~ 133 (276)
T PHA02857 104 HSMGATISILAAYKNPNLFTAMILMSPLVN 133 (276)
T ss_pred cCchHHHHHHHHHhCccccceEEEeccccc
Confidence 999999999999999999999999998764
No 13
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.84 E-value=9.8e-20 Score=136.75 Aligned_cols=108 Identities=27% Similarity=0.388 Sum_probs=98.4
Q ss_pred CeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCC-ccccccccHHHhHHHHHHHHHhcC---CCCcEEEEEe
Q 030815 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDM-KKIQDVHSFYEYNEPLLEILASLS---ADEKVVIVGH 83 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~-~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~lvG~ 83 (171)
.+||++||++.+...|..+++.|...||.|+++|+||||.|. ....+..+++++.+|+..+++... ...+++++||
T Consensus 35 g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gH 114 (298)
T COG2267 35 GVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGH 114 (298)
T ss_pred cEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEe
Confidence 689999999999999999999999999999999999999998 555566679999999999998883 4689999999
Q ss_pred ChhHHHHHHHHHhCCcceeEEEEeccccCCCC
Q 030815 84 SLGGLSLALAAEKFPHKISVAIFLTAFMPDTK 115 (171)
Q Consensus 84 S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (171)
||||.+++.++.+++.+++++|+.+|+.....
T Consensus 115 SmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~ 146 (298)
T COG2267 115 SMGGLIALLYLARYPPRIDGLVLSSPALGLGG 146 (298)
T ss_pred CcHHHHHHHHHHhCCccccEEEEECccccCCh
Confidence 99999999999999999999999999986554
No 14
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.84 E-value=4.1e-20 Score=135.58 Aligned_cols=102 Identities=23% Similarity=0.333 Sum_probs=92.3
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
+++|+|||+||++++...|..++..|.+ +|+|+.+|+||||.|.... ..+++++++++.++++.+ ...+++++|||
T Consensus 14 ~~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~s~~~~--~~~~~~~~~d~~~~l~~l-~~~~~~lvGhS 89 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLDNLGVLARDLVN-DHDIIQVDMRNHGLSPRDP--VMNYPAMAQDLLDTLDAL-QIEKATFIGHS 89 (255)
T ss_pred CCCCCEEEECCCCCchhHHHHHHHHHhh-CCeEEEECCCCCCCCCCCC--CCCHHHHHHHHHHHHHHc-CCCceEEEEEC
Confidence 4678999999999999999999999976 5999999999999987654 258999999999999998 67789999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEeccc
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
|||.+++.++.++|++|+++|++++.
T Consensus 90 ~Gg~va~~~a~~~~~~v~~lvli~~~ 115 (255)
T PRK10673 90 MGGKAVMALTALAPDRIDKLVAIDIA 115 (255)
T ss_pred HHHHHHHHHHHhCHhhcceEEEEecC
Confidence 99999999999999999999998753
No 15
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.84 E-value=5.2e-20 Score=137.84 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=93.6
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
+.+++|||+||++.+...|+.+++.|.+ +|+|+++|+||+|.|+.+....++.+++++++.++++++ +..+++++|||
T Consensus 32 G~~~~iv~lHG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lvG~S 109 (286)
T PRK03204 32 GTGPPILLCHGNPTWSFLYRDIIVALRD-RFRCVAPDYLGFGLSERPSGFGYQIDEHARVIGEFVDHL-GLDRYLSMGQD 109 (286)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHhC-CcEEEEECCCCCCCCCCCCccccCHHHHHHHHHHHHHHh-CCCCEEEEEEC
Confidence 4568999999999888889999999976 599999999999999766543468899999999999998 67889999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
|||.++..++..+|++++++|++++..
T Consensus 110 ~Gg~va~~~a~~~p~~v~~lvl~~~~~ 136 (286)
T PRK03204 110 WGGPISMAVAVERADRVRGVVLGNTWF 136 (286)
T ss_pred ccHHHHHHHHHhChhheeEEEEECccc
Confidence 999999999999999999999988754
No 16
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.83 E-value=5.8e-20 Score=136.69 Aligned_cols=105 Identities=22% Similarity=0.283 Sum_probs=86.4
Q ss_pred cCCCeEEEEcCCCCCchhHHhh---HHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEE
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKV---KPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIV 81 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~---~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lv 81 (171)
+++++||++||++.+...|..+ +..+.+.||+|+++|+||||.|+............++++.++++.+ +.++++++
T Consensus 28 g~~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~lv 106 (282)
T TIGR03343 28 GNGEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL-DIEKAHLV 106 (282)
T ss_pred CCCCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCcccccchhHHHHHHHHHHc-CCCCeeEE
Confidence 4678999999999887777543 4456566899999999999999765322112225678899999998 78899999
Q ss_pred EeChhHHHHHHHHHhCCcceeEEEEeccc
Q 030815 82 GHSLGGLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 82 G~S~Gg~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
||||||.+++.++.++|++++++|++++.
T Consensus 107 G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 135 (282)
T TIGR03343 107 GNSMGGATALNFALEYPDRIGKLILMGPG 135 (282)
T ss_pred EECchHHHHHHHHHhChHhhceEEEECCC
Confidence 99999999999999999999999999875
No 17
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.83 E-value=2.1e-19 Score=141.99 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=90.2
Q ss_pred CCeEEEEcCCCCCchhHHh-hHHHHH---hCCCeEEEecCCCCCCCCccccccccHHHhHHHHH-HHHHhcCCCCcEEEE
Q 030815 7 QKHFVLVHGSNHGAWCWYK-VKPQLE---AAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLL-EILASLSADEKVVIV 81 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~-~~~~l~---~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~lv 81 (171)
+++|||+||++++...|.. +.+.|. +.+|+|+++|+||||.|+.+....++++++++++. .+++.+ +..+++++
T Consensus 201 k~~VVLlHG~~~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~~~ytl~~~a~~l~~~ll~~l-g~~k~~LV 279 (481)
T PLN03087 201 KEDVLFIHGFISSSAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPADSLYTLREHLEMIERSVLERY-KVKSFHIV 279 (481)
T ss_pred CCeEEEECCCCccHHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCCCcCCHHHHHHHHHHHHHHHc-CCCCEEEE
Confidence 5799999999999999975 446654 35899999999999999876545578999999985 788888 78899999
Q ss_pred EeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 82 GHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 82 G~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
||||||.+++.++.++|++++++|+++++.
T Consensus 280 GhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~ 309 (481)
T PLN03087 280 AHSLGCILALALAVKHPGAVKSLTLLAPPY 309 (481)
T ss_pred EECHHHHHHHHHHHhChHhccEEEEECCCc
Confidence 999999999999999999999999999754
No 18
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.83 E-value=8.7e-20 Score=135.05 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSL 85 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~ 85 (171)
.+++|||+||++++...|..+++.|.+ +|+|+++|+||+|.|..+....++++++++++.++++.+ ..++++|+||||
T Consensus 27 ~~~~vv~~hG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~lvG~S~ 104 (278)
T TIGR03056 27 AGPLLLLLHGTGASTHSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFRFRFTLPSMAEDLSALCAAE-GLSPDGVIGHSA 104 (278)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhh-CcEEEeecCCCCCCCCCccccCCCHHHHHHHHHHHHHHc-CCCCceEEEECc
Confidence 368999999999999999999999976 599999999999999776544568999999999999988 668899999999
Q ss_pred hHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 86 GGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 86 Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
||.+++.++.++|++++++|++++...
T Consensus 105 Gg~~a~~~a~~~p~~v~~~v~~~~~~~ 131 (278)
T TIGR03056 105 GAAIALRLALDGPVTPRMVVGINAALM 131 (278)
T ss_pred cHHHHHHHHHhCCcccceEEEEcCccc
Confidence 999999999999999999999987653
No 19
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.83 E-value=6.3e-20 Score=139.82 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCCCCc-hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC-----CCCcEE
Q 030815 6 KQKHFVLVHGSNHGA-WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS-----ADEKVV 79 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~ 79 (171)
.+++|||+||++.+. ..|..+++.|.+.||+|+++|+||||.|........+.+.+++|+..+++.+. ...+++
T Consensus 58 ~~~~VvllHG~~~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~ 137 (330)
T PLN02298 58 PRALIFMVHGYGNDISWTFQSTAIFLAQMGFACFALDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRF 137 (330)
T ss_pred CceEEEEEcCCCCCcceehhHHHHHHHhCCCEEEEecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEE
Confidence 356799999998654 45777888898889999999999999997544334578888999998888762 134799
Q ss_pred EEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 80 IVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 80 lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
|+||||||.+++.++.++|++++++|+++|+..
T Consensus 138 l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~ 170 (330)
T PLN02298 138 LYGESMGGAICLLIHLANPEGFDGAVLVAPMCK 170 (330)
T ss_pred EEEecchhHHHHHHHhcCcccceeEEEeccccc
Confidence 999999999999999999999999999998753
No 20
>PRK10749 lysophospholipase L2; Provisional
Probab=99.83 E-value=2.4e-19 Score=136.74 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCcccc-----ccccHHHhHHHHHHHHHhcC---CCCc
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQ-----DVHSFYEYNEPLLEILASLS---ADEK 77 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~-----~~~~~~~~~~~~~~~i~~~~---~~~~ 77 (171)
.+++||++||++++...|..++..+.+.||+|+++|+||||.|..... ...+++++++++..+++.+. +..+
T Consensus 53 ~~~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 132 (330)
T PRK10749 53 HDRVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQPGPYRK 132 (330)
T ss_pred CCcEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhcCCCCC
Confidence 457899999999998889999999988999999999999999975421 22478899999999887751 4578
Q ss_pred EEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 78 VVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
++++||||||.++..++.++|++++++|+++|...
T Consensus 133 ~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~ 167 (330)
T PRK10749 133 RYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFG 167 (330)
T ss_pred eEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhc
Confidence 99999999999999999999999999999998753
No 21
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.83 E-value=1.6e-19 Score=133.55 Aligned_cols=107 Identities=23% Similarity=0.342 Sum_probs=101.6
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCcccc-ccccHHHhHHHHHHHHHhcCCCCcEEEEEe
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQ-DVHSFYEYNEPLLEILASLSADEKVVIVGH 83 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~ 83 (171)
+.+|.|+++||+....-+|+..+..|+..||+|+++|+||+|.|+.+.. +.+++..++.++..+|+.+ ..++++++||
T Consensus 42 ~~gP~illlHGfPe~wyswr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~lld~L-g~~k~~lvgH 120 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESWYSWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTIDELVGDIVALLDHL-GLKKAFLVGH 120 (322)
T ss_pred CCCCEEEEEccCCccchhhhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeHHHHHHHHHHHHHHh-ccceeEEEec
Confidence 4689999999999999999999999999999999999999999998876 6789999999999999999 7999999999
Q ss_pred ChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 84 SLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 84 S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
++|+.+|+.++..+|++++++|+++.+..
T Consensus 121 DwGaivaw~la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 121 DWGAIVAWRLALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred cchhHHHHHHHHhChhhcceEEEecCCCC
Confidence 99999999999999999999999997776
No 22
>PLN02578 hydrolase
Probab=99.83 E-value=1e-19 Score=140.07 Aligned_cols=104 Identities=25% Similarity=0.374 Sum_probs=93.5
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
+++++||++||++++...|..+.+.|.+ +|+|+.+|++|+|.|..+. ..++.+.+++++.++++.+ ..++++++|||
T Consensus 84 g~g~~vvliHG~~~~~~~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~-~~~~~~~~a~~l~~~i~~~-~~~~~~lvG~S 160 (354)
T PLN02578 84 GEGLPIVLIHGFGASAFHWRYNIPELAK-KYKVYALDLLGFGWSDKAL-IEYDAMVWRDQVADFVKEV-VKEPAVLVGNS 160 (354)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCcc-cccCHHHHHHHHHHHHHHh-ccCCeEEEEEC
Confidence 4568899999999999999999999976 5999999999999998765 3468889999999999998 67899999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
+||.+++.++.++|++++++|++++..
T Consensus 161 ~Gg~ia~~~A~~~p~~v~~lvLv~~~~ 187 (354)
T PLN02578 161 LGGFTALSTAVGYPELVAGVALLNSAG 187 (354)
T ss_pred HHHHHHHHHHHhChHhcceEEEECCCc
Confidence 999999999999999999999998653
No 23
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.82 E-value=3.2e-19 Score=138.08 Aligned_cols=105 Identities=24% Similarity=0.285 Sum_probs=95.3
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCcccc---ccccHHHhHHHHHHHHHhcCCCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQ---DVHSFYEYNEPLLEILASLSADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~lvG 82 (171)
.+++|||+||++.+...|+.+++.|.+ +|+|+++|+||||.|..+.. ..++++++++++.++++.+ ...+++|+|
T Consensus 126 ~~~~ivllHG~~~~~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~l-~~~~~~LvG 203 (383)
T PLN03084 126 NNPPVLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVSSLESLIDEL-KSDKVSLVV 203 (383)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHh-CCCCceEEE
Confidence 468999999999999999999999976 69999999999999987642 2468999999999999999 678999999
Q ss_pred eChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 83 HSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
||+||.+++.++.++|+++.++|+++++..
T Consensus 204 ~s~GG~ia~~~a~~~P~~v~~lILi~~~~~ 233 (383)
T PLN03084 204 QGYFSPPVVKYASAHPDKIKKLILLNPPLT 233 (383)
T ss_pred ECHHHHHHHHHHHhChHhhcEEEEECCCCc
Confidence 999999999999999999999999998754
No 24
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.82 E-value=2.2e-19 Score=132.13 Aligned_cols=95 Identities=25% Similarity=0.373 Sum_probs=82.0
Q ss_pred CeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhH
Q 030815 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGG 87 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg 87 (171)
++|||+||++++...|..+++.|.+. |+|+++|+||||.|.... ..+.++.++++.+ + ..++++++||||||
T Consensus 14 ~~ivllHG~~~~~~~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~--~~~~~~~~~~l~~----~-~~~~~~lvGhS~Gg 85 (256)
T PRK10349 14 VHLVLLHGWGLNAEVWRCIDEELSSH-FTLHLVDLPGFGRSRGFG--ALSLADMAEAVLQ----Q-APDKAIWLGWSLGG 85 (256)
T ss_pred CeEEEECCCCCChhHHHHHHHHHhcC-CEEEEecCCCCCCCCCCC--CCCHHHHHHHHHh----c-CCCCeEEEEECHHH
Confidence 46999999999999999999999875 999999999999997543 3567777666553 3 35789999999999
Q ss_pred HHHHHHHHhCCcceeEEEEeccc
Q 030815 88 LSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 88 ~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
.+++.++.++|++++++|++++.
T Consensus 86 ~ia~~~a~~~p~~v~~lili~~~ 108 (256)
T PRK10349 86 LVASQIALTHPERVQALVTVASS 108 (256)
T ss_pred HHHHHHHHhChHhhheEEEecCc
Confidence 99999999999999999999874
No 25
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.82 E-value=2.4e-19 Score=129.51 Aligned_cols=103 Identities=23% Similarity=0.303 Sum_probs=90.1
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCcccc-ccccHHHhHHH-HHHHHHhcCCCCcEEEEEeC
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQ-DVHSFYEYNEP-LLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~-~~~~~~~~~~~-~~~~i~~~~~~~~~~lvG~S 84 (171)
+|+||++||++++...|..+++.|. .||+|+.+|+||+|.|..+.. ...++++.+++ +...++.+ +.++++++|||
T Consensus 1 ~~~vv~~hG~~~~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~S 78 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQALIELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQL-GIEPFFLVGYS 78 (251)
T ss_pred CCEEEEEcCCCCchhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHc-CCCeEEEEEec
Confidence 4789999999999999999999998 689999999999999976542 34578888888 66667777 67899999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
+||.+++.++.++|+++.+++++++..
T Consensus 79 ~Gg~ia~~~a~~~~~~v~~lil~~~~~ 105 (251)
T TIGR03695 79 MGGRIALYYALQYPERVQGLILESGSP 105 (251)
T ss_pred cHHHHHHHHHHhCchheeeeEEecCCC
Confidence 999999999999999999999998754
No 26
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.81 E-value=1.2e-19 Score=131.37 Aligned_cols=103 Identities=22% Similarity=0.318 Sum_probs=92.1
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSL 85 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~ 85 (171)
.+|++|++||++.+...|..+++.|.+ ||+|+++|+||+|.|.... ..++.+++++++.+.++.+ +.++++++|||+
T Consensus 12 ~~~~li~~hg~~~~~~~~~~~~~~l~~-~~~v~~~d~~G~G~s~~~~-~~~~~~~~~~~~~~~i~~~-~~~~v~liG~S~ 88 (251)
T TIGR02427 12 GAPVLVFINSLGTDLRMWDPVLPALTP-DFRVLRYDKRGHGLSDAPE-GPYSIEDLADDVLALLDHL-GIERAVFCGLSL 88 (251)
T ss_pred CCCeEEEEcCcccchhhHHHHHHHhhc-ccEEEEecCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCCceEEEEeCc
Confidence 568899999999999999999999965 7999999999999986554 3458999999999999998 678899999999
Q ss_pred hHHHHHHHHHhCCcceeEEEEecccc
Q 030815 86 GGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 86 Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
||.+++.++.++|++++++|++++..
T Consensus 89 Gg~~a~~~a~~~p~~v~~li~~~~~~ 114 (251)
T TIGR02427 89 GGLIAQGLAARRPDRVRALVLSNTAA 114 (251)
T ss_pred hHHHHHHHHHHCHHHhHHHhhccCcc
Confidence 99999999999999999999998654
No 27
>PRK06489 hypothetical protein; Provisional
Probab=99.81 E-value=2.6e-19 Score=138.06 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=85.0
Q ss_pred CCeEEEEcCCCCCchhHH--hhHHHHH-------hCCCeEEEecCCCCCCCCccccc------cccHHHhHHHHHHHH-H
Q 030815 7 QKHFVLVHGSNHGAWCWY--KVKPQLE-------AAGHRVTALDLTASGIDMKKIQD------VHSFYEYNEPLLEIL-A 70 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~--~~~~~l~-------~~g~~v~~~d~~g~g~s~~~~~~------~~~~~~~~~~~~~~i-~ 70 (171)
+|+|||+||++++...|. .+.+.|. .++|+|+++|+||||.|+.+... .++++++++++...+ +
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~ 148 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTE 148 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHH
Confidence 689999999999988886 5655551 34799999999999999765421 357889998888865 6
Q ss_pred hcCCCCcEE-EEEeChhHHHHHHHHHhCCcceeEEEEeccc
Q 030815 71 SLSADEKVV-IVGHSLGGLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 71 ~~~~~~~~~-lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
++ +.++++ ++||||||++++.++.++|++++++|++++.
T Consensus 149 ~l-gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~ 188 (360)
T PRK06489 149 GL-GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQ 188 (360)
T ss_pred hc-CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccC
Confidence 67 667775 8999999999999999999999999999875
No 28
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.81 E-value=7e-19 Score=129.79 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=86.0
Q ss_pred CCeEEEEcCCCCCc----hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc--CCCCcEEE
Q 030815 7 QKHFVLVHGSNHGA----WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL--SADEKVVI 80 (171)
Q Consensus 7 ~~~vv~lHG~~~~~----~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~l 80 (171)
+++||++||++.+. ..|..+++.|.+.||.|+.+|+||||.|..... ..+...+.+|+...++.+ ....++++
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~-~~~~~~~~~Dv~~ai~~L~~~~~~~v~L 103 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFA-AARWDVWKEDVAAAYRWLIEQGHPPVTL 103 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCccc-cCCHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 57899999998643 456778899998999999999999999976542 246777777776655444 24678999
Q ss_pred EEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 81 VGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
+||||||.+++.++.++|++++++|+++|...
T Consensus 104 vG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~ 135 (266)
T TIGR03101 104 WGLRLGALLALDAANPLAAKCNRLVLWQPVVS 135 (266)
T ss_pred EEECHHHHHHHHHHHhCccccceEEEeccccc
Confidence 99999999999999999999999999998765
No 29
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.80 E-value=1.5e-18 Score=128.20 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=88.4
Q ss_pred CCCeEEEEcCCCCCc-hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccc--cccHHHhHHHHHHHHHhcCCCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGA-WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQD--VHSFYEYNEPLLEILASLSADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~lvG 82 (171)
.+++|||+||+.++. ..|..+...+.+.||+|+++|+||+|.|..+... ..+.+++++++.++++.+ +..+++++|
T Consensus 24 ~~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liG 102 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVDELEEVREKL-GLDKFYLLG 102 (288)
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHHHHHHHHHHc-CCCcEEEEE
Confidence 368899999986555 4456677777766899999999999998765322 368899999999999988 677899999
Q ss_pred eChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 83 HSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
|||||.+++.++.++|++++++|++++..
T Consensus 103 ~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 103 HSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred eehHHHHHHHHHHhCccccceeeEecccc
Confidence 99999999999999999999999988754
No 30
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.80 E-value=4.5e-19 Score=131.87 Aligned_cols=110 Identities=25% Similarity=0.356 Sum_probs=89.9
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccc---cHHHhHHHHHHHHHhcCCCCcEEEE
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVH---SFYEYNEPLLEILASLSADEKVVIV 81 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~lv 81 (171)
..++++|++||+|.+...|..-.+.|++ .+.|+++|++|+|+|+.+..... .....++.+.+-.... +..+++|+
T Consensus 88 ~~~~plVliHGyGAg~g~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~-~L~Kmilv 165 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAGLGLFFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKM-GLEKMILV 165 (365)
T ss_pred cCCCcEEEEeccchhHHHHHHhhhhhhh-cCceEEecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHc-CCcceeEe
Confidence 5678999999999999999888889988 69999999999999988764321 2223344444444444 78899999
Q ss_pred EeChhHHHHHHHHHhCCcceeEEEEeccccCCCCC
Q 030815 82 GHSLGGLSLALAAEKFPHKISVAIFLTAFMPDTKH 116 (171)
Q Consensus 82 G~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (171)
|||+||+++..+|.++|++|+.+|+++|+......
T Consensus 166 GHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~ 200 (365)
T KOG4409|consen 166 GHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKP 200 (365)
T ss_pred eccchHHHHHHHHHhChHhhceEEEecccccccCC
Confidence 99999999999999999999999999998866533
No 31
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.79 E-value=1e-18 Score=122.43 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc--CCCCcEEEEEe
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL--SADEKVVIVGH 83 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~lvG~ 83 (171)
.+.+|+++||+.|+....+.+.+.|.++||.|.+|.+||||...+.. -..+..+|.+++.+..+++ .....|.++|.
T Consensus 14 G~~AVLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~f-l~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~Gl 92 (243)
T COG1647 14 GNRAVLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDF-LKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGL 92 (243)
T ss_pred CCEEEEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHH-hcCCHHHHHHHHHHHHHHHHHcCCCeEEEEee
Confidence 34899999999999999999999999999999999999999876554 2358899999999888887 36778999999
Q ss_pred ChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 84 SLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 84 S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
||||.+++.++.++| ++++|.++++..
T Consensus 93 SmGGv~alkla~~~p--~K~iv~m~a~~~ 119 (243)
T COG1647 93 SMGGVFALKLAYHYP--PKKIVPMCAPVN 119 (243)
T ss_pred cchhHHHHHHHhhCC--ccceeeecCCcc
Confidence 999999999999999 899999998775
No 32
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.79 E-value=2.6e-18 Score=133.66 Aligned_cols=106 Identities=22% Similarity=0.278 Sum_probs=88.7
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC---CCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS---ADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~lvG 82 (171)
.+++||++||++++...|..+++.|.+.||+|+++|++|||.|........+.+.+.+|+..+++.+. ...+++++|
T Consensus 135 ~~~~Vl~lHG~~~~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvG 214 (395)
T PLN02652 135 MRGILIIIHGLNEHSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSENPGVPCFLFG 214 (395)
T ss_pred CceEEEEECCchHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 35689999999999989999999999999999999999999997654334477788888888888762 235799999
Q ss_pred eChhHHHHHHHHHhCC---cceeEEEEeccccC
Q 030815 83 HSLGGLSLALAAEKFP---HKISVAIFLTAFMP 112 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~---~~~~~~v~~~~~~~ 112 (171)
|||||.+++.++. +| ++++++|+.+|+..
T Consensus 215 hSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~ 246 (395)
T PLN02652 215 HSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALR 246 (395)
T ss_pred ECHHHHHHHHHHh-ccCcccccceEEEECcccc
Confidence 9999999998775 44 47999999998764
No 33
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.79 E-value=3.2e-18 Score=125.18 Aligned_cols=111 Identities=22% Similarity=0.281 Sum_probs=98.2
Q ss_pred CCeEEEEcCCCCCc-hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc-----CCCCcEEE
Q 030815 7 QKHFVLVHGSNHGA-WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL-----SADEKVVI 80 (171)
Q Consensus 7 ~~~vv~lHG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~l 80 (171)
+..|+++||++.+. ..++.++..|...||.|+.+|++|||.|.+......++...++|+..+++.. ....+..|
T Consensus 54 r~lv~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL 133 (313)
T KOG1455|consen 54 RGLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFL 133 (313)
T ss_pred ceEEEEEcCCcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeee
Confidence 44688999999775 7899999999999999999999999999987766778999999999888864 46678999
Q ss_pred EEeChhHHHHHHHHHhCCcceeEEEEeccccCCCCCC
Q 030815 81 VGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDTKHQ 117 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~ 117 (171)
+||||||.|++.++.+.|+..+|+|+++|.+......
T Consensus 134 ~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~ 170 (313)
T KOG1455|consen 134 FGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDT 170 (313)
T ss_pred eecCcchHHHHHHHhhCCcccccceeeecccccCCcc
Confidence 9999999999999999999999999999998766554
No 34
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.77 E-value=2.5e-18 Score=124.18 Aligned_cols=97 Identities=22% Similarity=0.276 Sum_probs=82.2
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChh
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLG 86 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~G 86 (171)
+++|||+||++++...|..+++.|.+ +|+|+.+|+||+|.|.... ..+++++++++.+.+ ..+++++|||||
T Consensus 4 ~~~iv~~HG~~~~~~~~~~~~~~l~~-~~~vi~~d~~G~G~s~~~~--~~~~~~~~~~~~~~~-----~~~~~lvG~S~G 75 (245)
T TIGR01738 4 NVHLVLIHGWGMNAEVFRCLDEELSA-HFTLHLVDLPGHGRSRGFG--PLSLADAAEAIAAQA-----PDPAIWLGWSLG 75 (245)
T ss_pred CceEEEEcCCCCchhhHHHHHHhhcc-CeEEEEecCCcCccCCCCC--CcCHHHHHHHHHHhC-----CCCeEEEEEcHH
Confidence 47899999999999999999999976 5999999999999986543 246777766655432 368999999999
Q ss_pred HHHHHHHHHhCCcceeEEEEecccc
Q 030815 87 GLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 87 g~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
|.+++.++.++|+++.++|++++..
T Consensus 76 g~~a~~~a~~~p~~v~~~il~~~~~ 100 (245)
T TIGR01738 76 GLVALHIAATHPDRVRALVTVASSP 100 (245)
T ss_pred HHHHHHHHHHCHHhhheeeEecCCc
Confidence 9999999999999999999988654
No 35
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.77 E-value=1e-17 Score=130.79 Aligned_cols=106 Identities=21% Similarity=0.228 Sum_probs=86.5
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccH----HHhHHHHHHHHHhcCCCCcEEE
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSF----YEYNEPLLEILASLSADEKVVI 80 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~l 80 (171)
+.+|+||++||++.+...|...++.|.+. |+|+.+|+||+|.|..+.....+. +.+++++.+.++.+ +..++++
T Consensus 103 ~~~p~vvllHG~~~~~~~~~~~~~~L~~~-~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~~l-~~~~~~l 180 (402)
T PLN02894 103 EDAPTLVMVHGYGASQGFFFRNFDALASR-FRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAK-NLSNFIL 180 (402)
T ss_pred CCCCEEEEECCCCcchhHHHHHHHHHHhC-CEEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHc-CCCCeEE
Confidence 35689999999999888898888889774 999999999999997654221122 22456666777777 6679999
Q ss_pred EEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 81 VGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
+||||||.+++.++.++|++++++|+++|...
T Consensus 181 vGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~ 212 (402)
T PLN02894 181 LGHSFGGYVAAKYALKHPEHVQHLILVGPAGF 212 (402)
T ss_pred EEECHHHHHHHHHHHhCchhhcEEEEECCccc
Confidence 99999999999999999999999999987653
No 36
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.75 E-value=2e-17 Score=127.65 Aligned_cols=104 Identities=27% Similarity=0.387 Sum_probs=92.5
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
+++++|||+||++++...|..+.+.|.+. |+|+++|+||||.|.... ...+++++++++.++++.+ +..+++++|||
T Consensus 129 ~~~~~vl~~HG~~~~~~~~~~~~~~l~~~-~~v~~~d~~g~G~s~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~lvG~S 205 (371)
T PRK14875 129 GDGTPVVLIHGFGGDLNNWLFNHAALAAG-RPVIALDLPGHGASSKAV-GAGSLDELAAAVLAFLDAL-GIERAHLVGHS 205 (371)
T ss_pred CCCCeEEEECCCCCccchHHHHHHHHhcC-CEEEEEcCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhc-CCccEEEEeec
Confidence 34689999999999999999999999775 999999999999986543 2358899999999999998 66789999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
+||.+++.++.++|+++.++|+++++.
T Consensus 206 ~Gg~~a~~~a~~~~~~v~~lv~~~~~~ 232 (371)
T PRK14875 206 MGGAVALRLAARAPQRVASLTLIAPAG 232 (371)
T ss_pred hHHHHHHHHHHhCchheeEEEEECcCC
Confidence 999999999999999999999998764
No 37
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.75 E-value=5.2e-18 Score=130.04 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=81.9
Q ss_pred CCeEEEEcCCCCCch------------hHHhhHH---HHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHh
Q 030815 7 QKHFVLVHGSNHGAW------------CWYKVKP---QLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILAS 71 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~------------~~~~~~~---~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~ 71 (171)
++++||+||+.++.. .|..+++ .|...+|+|+++|+||+|.|... .++.+++++++.++++.
T Consensus 57 ~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~~---~~~~~~~a~dl~~ll~~ 133 (343)
T PRK08775 57 GAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSLDV---PIDTADQADAIALLLDA 133 (343)
T ss_pred CCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCCCC---CCCHHHHHHHHHHHHHH
Confidence 456777777665544 5777775 56434699999999999977432 24788999999999999
Q ss_pred cCCCCc-EEEEEeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 72 LSADEK-VVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 72 ~~~~~~-~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
+ +.++ ++++||||||++++.++.++|++++++|++++..
T Consensus 134 l-~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~~ 173 (343)
T PRK08775 134 L-GIARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGAH 173 (343)
T ss_pred c-CCCcceEEEEECHHHHHHHHHHHHChHhhheEEEECccc
Confidence 9 5555 5899999999999999999999999999999764
No 38
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.74 E-value=2e-17 Score=124.94 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=85.2
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCcccc-ccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQ-DVHSFYEYNEPLLEILASLSADEKVVIVGHSL 85 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~ 85 (171)
+++|||+||+.++...+ .+...+...+|+|+++|+||||.|..+.. ...+..+.++++..+++.+ +..+++++||||
T Consensus 27 ~~~lvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l-~~~~~~lvG~S~ 104 (306)
T TIGR01249 27 GKPVVFLHGGPGSGTDP-GCRRFFDPETYRIVLFDQRGCGKSTPHACLEENTTWDLVADIEKLREKL-GIKNWLVFGGSW 104 (306)
T ss_pred CCEEEEECCCCCCCCCH-HHHhccCccCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc-CCCCEEEEEECH
Confidence 67899999987665443 34445545689999999999999975532 2346788899999999988 678899999999
Q ss_pred hHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 86 GGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 86 Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
||.+++.++.++|++++++|+++++..
T Consensus 105 GG~ia~~~a~~~p~~v~~lvl~~~~~~ 131 (306)
T TIGR01249 105 GSTLALAYAQTHPEVVTGLVLRGIFLL 131 (306)
T ss_pred HHHHHHHHHHHChHhhhhheeeccccC
Confidence 999999999999999999999987653
No 39
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.74 E-value=1.9e-17 Score=125.74 Aligned_cols=112 Identities=29% Similarity=0.433 Sum_probs=95.7
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhC-CCeEEEecCCCCCC-CCccccccccHHHhHHHHHHHHHhcCCCCcEEEEE
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAA-GHRVTALDLTASGI-DMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVG 82 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~g~g~-s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG 82 (171)
+.+++||++||++++..+|+..+..|.+. |+.|+++|++|+|. |..+....++..++++.+..+.... ...++++||
T Consensus 56 ~~~~pvlllHGF~~~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~-~~~~~~lvg 134 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGASSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEV-FVEPVSLVG 134 (326)
T ss_pred CCCCcEEEeccccCCcccHhhhccccccccceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhh-cCcceEEEE
Confidence 46899999999999999999999988765 69999999999995 4555555689999999999998888 677799999
Q ss_pred eChhHHHHHHHHHhCCcceeEEE---EeccccCCCCCC
Q 030815 83 HSLGGLSLALAAEKFPHKISVAI---FLTAFMPDTKHQ 117 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~~~~~~~v---~~~~~~~~~~~~ 117 (171)
||+||.++..+|..+|+.|+++| ++++........
T Consensus 135 hS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~ 172 (326)
T KOG1454|consen 135 HSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKG 172 (326)
T ss_pred eCcHHHHHHHHHHhCcccccceeeecccccccccCCcc
Confidence 99999999999999999999999 666655444333
No 40
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.72 E-value=3e-17 Score=126.26 Aligned_cols=105 Identities=15% Similarity=0.210 Sum_probs=85.0
Q ss_pred CCeEEEEcCCCCCch-----------hHHhhH---HHHHhCCCeEEEecCCC--CCCCCcc----c-------cccccHH
Q 030815 7 QKHFVLVHGSNHGAW-----------CWYKVK---PQLEAAGHRVTALDLTA--SGIDMKK----I-------QDVHSFY 59 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~-----------~~~~~~---~~l~~~g~~v~~~d~~g--~g~s~~~----~-------~~~~~~~ 59 (171)
+++||++||++++.. .|..++ ..|.+.+|+|+++|+|| +|.|... . ...++++
T Consensus 31 ~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T TIGR01392 31 SNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIR 110 (351)
T ss_pred CCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHH
Confidence 578999999998653 366665 25545679999999999 5554321 0 1136899
Q ss_pred HhHHHHHHHHHhcCCCCc-EEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 60 EYNEPLLEILASLSADEK-VVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 60 ~~~~~~~~~i~~~~~~~~-~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
++++++.++++.+ +..+ ++++||||||.+++.++.++|++++++|++++...
T Consensus 111 ~~~~~~~~~~~~l-~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 163 (351)
T TIGR01392 111 DDVKAQKLLLDHL-GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSAR 163 (351)
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCc
Confidence 9999999999999 6777 99999999999999999999999999999997653
No 41
>PLN02511 hydrolase
Probab=99.72 E-value=1.1e-16 Score=124.51 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=81.1
Q ss_pred cCCCeEEEEcCCCCCchh-H-HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc---CCCCcEE
Q 030815 5 KKQKHFVLVHGSNHGAWC-W-YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL---SADEKVV 79 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~-~-~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~ 79 (171)
..+|+||++||++++... | ..++..+.+.||+|+++|+||||.|....... ....+.+|+.++++.+ ....+++
T Consensus 98 ~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~~~~-~~~~~~~Dl~~~i~~l~~~~~~~~~~ 176 (388)
T PLN02511 98 ADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVTTPQF-YSASFTGDLRQVVDHVAGRYPSANLY 176 (388)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCcCE-EcCCchHHHHHHHHHHHHHCCCCCEE
Confidence 356889999999776543 4 56777777789999999999999987543222 2345566666666665 2346899
Q ss_pred EEEeChhHHHHHHHHHhCCcc--eeEEEEecccc
Q 030815 80 IVGHSLGGLSLALAAEKFPHK--ISVAIFLTAFM 111 (171)
Q Consensus 80 lvG~S~Gg~~a~~~~~~~~~~--~~~~v~~~~~~ 111 (171)
++||||||.+++.++.+++++ +.++++++++.
T Consensus 177 lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~ 210 (388)
T PLN02511 177 AAGWSLGANILVNYLGEEGENCPLSGAVSLCNPF 210 (388)
T ss_pred EEEechhHHHHHHHHHhcCCCCCceEEEEECCCc
Confidence 999999999999999999887 88888887654
No 42
>PRK07581 hypothetical protein; Validated
Probab=99.72 E-value=2.4e-17 Score=126.15 Aligned_cols=104 Identities=10% Similarity=0.062 Sum_probs=75.0
Q ss_pred CCeEEEEcCCCCCchhHHhhH---HHHHhCCCeEEEecCCCCCCCCcccc--ccccHHH-----hHHHHHH----HHHhc
Q 030815 7 QKHFVLVHGSNHGAWCWYKVK---PQLEAAGHRVTALDLTASGIDMKKIQ--DVHSFYE-----YNEPLLE----ILASL 72 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~---~~l~~~g~~v~~~d~~g~g~s~~~~~--~~~~~~~-----~~~~~~~----~i~~~ 72 (171)
.|+||+.||++++...|..++ +.|...+|+|+++|+||||.|..+.. ..+++++ .++++.. +++.+
T Consensus 41 ~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 120 (339)
T PRK07581 41 DNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKF 120 (339)
T ss_pred CCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHh
Confidence 356777777776655554433 36655579999999999999975432 1223322 3344433 55667
Q ss_pred CCCCc-EEEEEeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 73 SADEK-VVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 73 ~~~~~-~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
+..+ ++||||||||++++.++.++|++|+++|++++..
T Consensus 121 -gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~ 159 (339)
T PRK07581 121 -GIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTA 159 (339)
T ss_pred -CCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCC
Confidence 6778 5899999999999999999999999999998654
No 43
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.71 E-value=6.3e-17 Score=123.55 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=84.8
Q ss_pred CCCeEEEEcCCCCCch-hH-------------------------HhhHHHHHhCCCeEEEecCCCCCCCCccc---cccc
Q 030815 6 KQKHFVLVHGSNHGAW-CW-------------------------YKVKPQLEAAGHRVTALDLTASGIDMKKI---QDVH 56 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~-~~-------------------------~~~~~~l~~~g~~v~~~d~~g~g~s~~~~---~~~~ 56 (171)
.+.+|+++||++++.. .+ ..+++.|.+.||.|+.+|+||||.|.... ....
T Consensus 20 ~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D~rGHG~S~~~~~~~g~~~ 99 (332)
T TIGR01607 20 AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDLQGHGESDGLQNLRGHIN 99 (332)
T ss_pred CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEecccccCCCccccccccchh
Confidence 4568999999998875 21 46899999999999999999999987542 1224
Q ss_pred cHHHhHHHHHHHHHhcC----------------------C-CCcEEEEEeChhHHHHHHHHHhCCc--------ceeEEE
Q 030815 57 SFYEYNEPLLEILASLS----------------------A-DEKVVIVGHSLGGLSLALAAEKFPH--------KISVAI 105 (171)
Q Consensus 57 ~~~~~~~~~~~~i~~~~----------------------~-~~~~~lvG~S~Gg~~a~~~~~~~~~--------~~~~~v 105 (171)
+++++++|+..+++... . ..+++|+||||||.+++.++.++++ .++++|
T Consensus 100 ~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~~~~~~~~~~~~i~g~i 179 (332)
T TIGR01607 100 CFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELLGKSNENNDKLNIKGCI 179 (332)
T ss_pred hHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHhccccccccccccceEE
Confidence 78899999988887641 1 4689999999999999999876542 589999
Q ss_pred Eecccc
Q 030815 106 FLTAFM 111 (171)
Q Consensus 106 ~~~~~~ 111 (171)
+++|+.
T Consensus 180 ~~s~~~ 185 (332)
T TIGR01607 180 SLSGMI 185 (332)
T ss_pred Eeccce
Confidence 999875
No 44
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.70 E-value=1.7e-16 Score=140.91 Aligned_cols=103 Identities=19% Similarity=0.278 Sum_probs=91.2
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccc-------cccccHHHhHHHHHHHHHhcCCCCcE
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKI-------QDVHSFYEYNEPLLEILASLSADEKV 78 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~ 78 (171)
.+++|||+||++++...|..+++.|.+ +|+|+.+|+||||.|.... ...++++.+++++.++++++ ..+++
T Consensus 1370 ~~~~vVllHG~~~s~~~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l-~~~~v 1447 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGEDWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHI-TPGKV 1447 (1655)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHh-CCCCE
Confidence 357999999999999999999999976 4999999999999986532 12457889999999999998 67899
Q ss_pred EEEEeChhHHHHHHHHHhCCcceeEEEEeccc
Q 030815 79 VIVGHSLGGLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 79 ~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
+++||||||.+++.++.++|++++++|++++.
T Consensus 1448 ~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~ 1479 (1655)
T PLN02980 1448 TLVGYSMGARIALYMALRFSDKIEGAVIISGS 1479 (1655)
T ss_pred EEEEECHHHHHHHHHHHhChHhhCEEEEECCC
Confidence 99999999999999999999999999999864
No 45
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.69 E-value=1.9e-16 Score=114.63 Aligned_cols=105 Identities=22% Similarity=0.361 Sum_probs=89.9
Q ss_pred ccCCCeEEEEcCCCCCchhHHhhHHHHHhC-CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc--CCCCcEEE
Q 030815 4 AKKQKHFVLVHGSNHGAWCWYKVKPQLEAA-GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL--SADEKVVI 80 (171)
Q Consensus 4 ~~~~~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~l 80 (171)
.+.+|.++++||.|.+...|..++..+..+ ..+++++|+||||.+.-.+....+.+.+++|+.+.++.+ ....+|+|
T Consensus 71 ~t~gpil~l~HG~G~S~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge~~~~iil 150 (343)
T KOG2564|consen 71 ATEGPILLLLHGGGSSALSFAIFASELKSKIRCRCLALDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGELPPQIIL 150 (343)
T ss_pred CCCccEEEEeecCcccchhHHHHHHHHHhhcceeEEEeeccccCccccCChhhcCHHHHHHHHHHHHHHHhccCCCceEE
Confidence 457889999999999999999999999775 467788999999999877767789999999999999988 35667999
Q ss_pred EEeChhHHHHHHHHHh--CCcceeEEEEecc
Q 030815 81 VGHSLGGLSLALAAEK--FPHKISVAIFLTA 109 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~--~~~~~~~~v~~~~ 109 (171)
|||||||.++.+.+.. .|+ +.|++.++-
T Consensus 151 VGHSmGGaIav~~a~~k~lps-l~Gl~viDV 180 (343)
T KOG2564|consen 151 VGHSMGGAIAVHTAASKTLPS-LAGLVVIDV 180 (343)
T ss_pred Eeccccchhhhhhhhhhhchh-hhceEEEEE
Confidence 9999999999888764 355 888888873
No 46
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.69 E-value=2e-16 Score=122.85 Aligned_cols=105 Identities=13% Similarity=0.242 Sum_probs=83.9
Q ss_pred CCeEEEEcCCCCCchh-------------HHhhHH---HHHhCCCeEEEecCCCC-CCCCccc----c---------ccc
Q 030815 7 QKHFVLVHGSNHGAWC-------------WYKVKP---QLEAAGHRVTALDLTAS-GIDMKKI----Q---------DVH 56 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~-------------~~~~~~---~l~~~g~~v~~~d~~g~-g~s~~~~----~---------~~~ 56 (171)
+|+|||+||++++... |..++. .+...+|+|+++|++|+ +.|+.+. . ..+
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~ 127 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI 127 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence 6899999999998875 555442 33244799999999983 4443221 0 146
Q ss_pred cHHHhHHHHHHHHHhcCCCCc-EEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 57 SFYEYNEPLLEILASLSADEK-VVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 57 ~~~~~~~~~~~~i~~~~~~~~-~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
+++++++++.++++.+ +..+ ++++||||||.+++.++.++|++++++|++++...
T Consensus 128 ~~~~~~~~~~~~l~~l-~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 183 (379)
T PRK00175 128 TIRDWVRAQARLLDAL-GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSAR 183 (379)
T ss_pred CHHHHHHHHHHHHHHh-CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcc
Confidence 8999999999999999 6677 59999999999999999999999999999997653
No 47
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.68 E-value=1.6e-15 Score=112.95 Aligned_cols=105 Identities=13% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCCC----CchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC----CCCc
Q 030815 6 KQKHFVLVHGSNH----GAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS----ADEK 77 (171)
Q Consensus 6 ~~~~vv~lHG~~~----~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~ 77 (171)
++++||++||+.. +...|..+++.|.+.||.++++|++|||.|.... .+.+++.+|+.+.++.+. ..++
T Consensus 25 ~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~---~~~~~~~~d~~~~~~~l~~~~~g~~~ 101 (274)
T TIGR03100 25 HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGEN---LGFEGIDADIAAAIDAFREAAPHLRR 101 (274)
T ss_pred CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 4567888887653 3344677899999999999999999999987543 356677777777777662 3467
Q ss_pred EEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 78 VVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
++++|||+||.+++.++.. +.+++++|+++|+....
T Consensus 102 i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~ 137 (274)
T TIGR03100 102 IVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTE 137 (274)
T ss_pred EEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCc
Confidence 9999999999999999765 46799999999986543
No 48
>PRK10985 putative hydrolase; Provisional
Probab=99.67 E-value=1.7e-15 Score=115.43 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCCCCchh--HHhhHHHHHhCCCeEEEecCCCCCCCCccccccc---cHHHhHHHHHHHHHhcCCCCcEEE
Q 030815 6 KQKHFVLVHGSNHGAWC--WYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVH---SFYEYNEPLLEILASLSADEKVVI 80 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~l 80 (171)
.+|+||++||++++... +..+++.|.+.||+|+++|+||+|.+.......+ ..++. ..+.+.++......++++
T Consensus 57 ~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~D~-~~~i~~l~~~~~~~~~~~ 135 (324)
T PRK10985 57 HKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHRIYHSGETEDA-RFFLRWLQREFGHVPTAA 135 (324)
T ss_pred CCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcceECCCchHHH-HHHHHHHHHhCCCCCEEE
Confidence 46899999999876433 5678899999999999999999997654321111 22222 222333333225678999
Q ss_pred EEeChhHHHHHHHHHhCCcc--eeEEEEeccccC
Q 030815 81 VGHSLGGLSLALAAEKFPHK--ISVAIFLTAFMP 112 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~~~~~--~~~~v~~~~~~~ 112 (171)
+||||||.++..++.++++. +.++|+++++..
T Consensus 136 vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~ 169 (324)
T PRK10985 136 VGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLM 169 (324)
T ss_pred EEecchHHHHHHHHHhhCCCCCccEEEEEcCCCC
Confidence 99999999888887776543 889999988753
No 49
>PRK05855 short chain dehydrogenase; Validated
Probab=99.67 E-value=4.2e-16 Score=126.61 Aligned_cols=103 Identities=21% Similarity=0.307 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccc-cccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKI-QDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
++|+|||+||++++...|..+++.| ..+|+|+++|+||||.|..+. ...++.+++++++..+++.+....+++|+|||
T Consensus 24 ~~~~ivllHG~~~~~~~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~~~~~~~lvGhS 102 (582)
T PRK05855 24 DRPTVVLVHGYPDNHEVWDGVAPLL-ADRFRVVAYDVRGAGRSSAPKRTAAYTLARLADDFAAVIDAVSPDRPVHLLAHD 102 (582)
T ss_pred CCCeEEEEcCCCchHHHHHHHHHHh-hcceEEEEecCCCCCCCCCCCcccccCHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 4689999999999999999999999 457999999999999997543 23468999999999999998334459999999
Q ss_pred hhHHHHHHHHHhC--CcceeEEEEecc
Q 030815 85 LGGLSLALAAEKF--PHKISVAIFLTA 109 (171)
Q Consensus 85 ~Gg~~a~~~~~~~--~~~~~~~v~~~~ 109 (171)
|||.+++.++.+. +.++..++.+++
T Consensus 103 ~Gg~~a~~~a~~~~~~~~v~~~~~~~~ 129 (582)
T PRK05855 103 WGSIQGWEAVTRPRAAGRIASFTSVSG 129 (582)
T ss_pred hHHHHHHHHHhCccchhhhhhheeccC
Confidence 9999998887763 344555554443
No 50
>PRK13604 luxD acyl transferase; Provisional
Probab=99.67 E-value=1.2e-15 Score=113.89 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCC-CCCCccccccccHHHhHHHHHHHHHhc--CCCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTAS-GIDMKKIQDVHSFYEYNEPLLEILASL--SADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~-g~s~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~lvG 82 (171)
+.++||+.||++.+...+..+++.|.++||.|+.+|++|+ |.|.+.... .+.....+|+...++.+ ....++.|+|
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~-~t~s~g~~Dl~aaid~lk~~~~~~I~LiG 114 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDE-FTMSIGKNSLLTVVDWLNTRGINNLGLIA 114 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccc-CcccccHHHHHHHHHHHHhcCCCceEEEE
Confidence 4578999999999887799999999999999999999987 888765422 23333345554444444 2567899999
Q ss_pred eChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 83 HSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
|||||.++..+|... +++++|+.+|+..
T Consensus 115 ~SmGgava~~~A~~~--~v~~lI~~sp~~~ 142 (307)
T PRK13604 115 ASLSARIAYEVINEI--DLSFLITAVGVVN 142 (307)
T ss_pred ECHHHHHHHHHhcCC--CCCEEEEcCCccc
Confidence 999999987777643 4889999998875
No 51
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.66 E-value=1.7e-15 Score=118.27 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=82.5
Q ss_pred cCCCeEEEEcCCCCCc--hhHHh-hHHHHHh--CCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc-----CC
Q 030815 5 KKQKHFVLVHGSNHGA--WCWYK-VKPQLEA--AGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL-----SA 74 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~--~~~~~-~~~~l~~--~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~-----~~ 74 (171)
..+|++|++||++++. ..|.. +.+.+.. ..++|+++||+|+|.+..+... ......++++.++++.+ .+
T Consensus 39 ~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~-~~t~~vg~~la~lI~~L~~~~gl~ 117 (442)
T TIGR03230 39 HETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSA-AYTKLVGKDVAKFVNWMQEEFNYP 117 (442)
T ss_pred CCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCcccc-ccHHHHHHHHHHHHHHHHHhhCCC
Confidence 3578999999998654 34654 5555532 2599999999999987654322 23455566666666654 14
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 75 DEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
..+++||||||||.+|..++.+++.++.++++++|+.+..
T Consensus 118 l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP~F 157 (442)
T TIGR03230 118 WDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGPTF 157 (442)
T ss_pred CCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCCCcc
Confidence 6799999999999999999999999999999999977643
No 52
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.66 E-value=2.2e-15 Score=101.40 Aligned_cols=94 Identities=20% Similarity=0.323 Sum_probs=76.4
Q ss_pred eEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHH
Q 030815 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGL 88 (171)
Q Consensus 9 ~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~ 88 (171)
+||++||.+++...|..+++.|.++||.++.+|+|+++.+.... ..++..+++. ....+..+++++|||+||.
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~i~l~G~S~Gg~ 73 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPGHGDSDGAD----AVERVLADIR---AGYPDPDRIILIGHSMGGA 73 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTTSTTSHHSH----HHHHHHHHHH---HHHCTCCEEEEEEETHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCCccchhH----HHHHHHHHHH---hhcCCCCcEEEEEEccCcH
Confidence 68999999999999999999999999999999999999762211 2333333322 2112678999999999999
Q ss_pred HHHHHHHhCCcceeEEEEeccc
Q 030815 89 SLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 89 ~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
++..++.+. .+++++|+++++
T Consensus 74 ~a~~~~~~~-~~v~~~v~~~~~ 94 (145)
T PF12695_consen 74 IAANLAARN-PRVKAVVLLSPY 94 (145)
T ss_dssp HHHHHHHHS-TTESEEEEESES
T ss_pred HHHHHhhhc-cceeEEEEecCc
Confidence 999999998 789999999994
No 53
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.65 E-value=3.2e-15 Score=117.14 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCCCc-hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC--CCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGA-WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS--ADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~lvG 82 (171)
+.|+||+.||+++.. +.|..+++.|.++||.|+++|+||+|.|..... ..........+.+.+.... +..++.++|
T Consensus 193 ~~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~-~~d~~~~~~avld~l~~~~~vd~~ri~l~G 271 (414)
T PRK05077 193 PFPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKL-TQDSSLLHQAVLNALPNVPWVDHTRVAAFG 271 (414)
T ss_pred CccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCc-cccHHHHHHHHHHHHHhCcccCcccEEEEE
Confidence 456666666666553 568888999999999999999999999865321 1233444455666665542 557899999
Q ss_pred eChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 83 HSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
|||||.+++.++..+|++++++|++++...
T Consensus 272 ~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 272 FRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred EChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 999999999999999999999999998764
No 54
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.64 E-value=2e-15 Score=112.43 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=80.1
Q ss_pred cCCCeEEEEcCCCCCc-hhHHh-hHHHH-HhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc-----CCCC
Q 030815 5 KKQKHFVLVHGSNHGA-WCWYK-VKPQL-EAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL-----SADE 76 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~-~~~~~-~~~~l-~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~ 76 (171)
+.+|++|++||++++. ..|.. +.+.+ ...+++|+++||++++.+..+. ...+.....+++..+++.+ ...+
T Consensus 34 ~~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~-a~~~~~~v~~~la~~l~~L~~~~g~~~~ 112 (275)
T cd00707 34 PSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQ-AVNNTRVVGAELAKFLDFLVDNTGLSLE 112 (275)
T ss_pred CCCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHH-HHHhHHHHHHHHHHHHHHHHHhcCCChH
Confidence 3578999999999877 56654 44444 4457999999999874332211 2234445555666665554 1456
Q ss_pred cEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 77 KVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
++++|||||||.++..++.++++++.+++.++|..+..
T Consensus 113 ~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p~f 150 (275)
T cd00707 113 NVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGPLF 150 (275)
T ss_pred HEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcccc
Confidence 89999999999999999999999999999999887654
No 55
>PRK10566 esterase; Provisional
Probab=99.63 E-value=7.7e-15 Score=107.52 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccc--cc----cHHHhHHHHHHHHHhc-----CC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQD--VH----SFYEYNEPLLEILASL-----SA 74 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~--~~----~~~~~~~~~~~~i~~~-----~~ 74 (171)
..|+||++||++++...|..+++.|.+.||+|+++|+||+|.+...... .. ...+..+++.+.++.+ .+
T Consensus 26 ~~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (249)
T PRK10566 26 PLPTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLL 105 (249)
T ss_pred CCCEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 4589999999999988899999999999999999999999975322110 00 0112223333333332 14
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCcceeEEEEec
Q 030815 75 DEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLT 108 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~ 108 (171)
.+++.++|||+||.+++.++.+++.....+++++
T Consensus 106 ~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~ 139 (249)
T PRK10566 106 DDRLAVGGASMGGMTALGIMARHPWVKCVASLMG 139 (249)
T ss_pred ccceeEEeecccHHHHHHHHHhCCCeeEEEEeeC
Confidence 5789999999999999999998876444444443
No 56
>PRK11071 esterase YqiA; Provisional
Probab=99.63 E-value=6e-15 Score=104.24 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=72.8
Q ss_pred CeEEEEcCCCCCchhHHh--hHHHHHhC--CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEe
Q 030815 8 KHFVLVHGSNHGAWCWYK--VKPQLEAA--GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGH 83 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~--~~~~l~~~--g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~ 83 (171)
|+||++||++++...|+. +.+.+.+. +|+++++|+||++ ++.++.+.++++.+ +.++++++||
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~------------~~~~~~l~~l~~~~-~~~~~~lvG~ 68 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPYP------------ADAAELLESLVLEH-GGDPLGLVGS 68 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCCH------------HHHHHHHHHHHHHc-CCCCeEEEEE
Confidence 579999999999999874 45666553 7999999999874 35677778888887 6789999999
Q ss_pred ChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 84 SLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 84 S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
||||.+++.++.++|. ++|+++|...
T Consensus 69 S~Gg~~a~~~a~~~~~---~~vl~~~~~~ 94 (190)
T PRK11071 69 SLGGYYATWLSQCFML---PAVVVNPAVR 94 (190)
T ss_pred CHHHHHHHHHHHHcCC---CEEEECCCCC
Confidence 9999999999999983 4577887654
No 57
>PLN00021 chlorophyllase
Probab=99.59 E-value=2.5e-14 Score=108.13 Aligned_cols=108 Identities=19% Similarity=0.094 Sum_probs=79.3
Q ss_pred ccCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc------CCCCc
Q 030815 4 AKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL------SADEK 77 (171)
Q Consensus 4 ~~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~ 77 (171)
.++.|+|||+||++.+...|..+++.|+++||.|+++|+++++...... ...+..+..+++.+.++.+ .+..+
T Consensus 49 ~g~~PvVv~lHG~~~~~~~y~~l~~~Las~G~~VvapD~~g~~~~~~~~-~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~ 127 (313)
T PLN00021 49 AGTYPVLLFLHGYLLYNSFYSQLLQHIASHGFIVVAPQLYTLAGPDGTD-EIKDAAAVINWLSSGLAAVLPEGVRPDLSK 127 (313)
T ss_pred CCCCCEEEEECCCCCCcccHHHHHHHHHhCCCEEEEecCCCcCCCCchh-hHHHHHHHHHHHHhhhhhhcccccccChhh
Confidence 3456899999999999888999999999999999999999865332111 1112233333343333221 13468
Q ss_pred EEEEEeChhHHHHHHHHHhCCc-----ceeEEEEeccccC
Q 030815 78 VVIVGHSLGGLSLALAAEKFPH-----KISVAIFLTAFMP 112 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~~~~-----~~~~~v~~~~~~~ 112 (171)
+.++|||+||.+++.++.++++ ++.++|.++|...
T Consensus 128 v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g 167 (313)
T PLN00021 128 LALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDG 167 (313)
T ss_pred eEEEEECcchHHHHHHHhhccccccccceeeEEeeccccc
Confidence 9999999999999999998763 6899999998654
No 58
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.58 E-value=1.7e-14 Score=110.98 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCCCchh-----HHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHH-HHHHHHhc---CCCCc
Q 030815 7 QKHFVLVHGSNHGAWC-----WYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEP-LLEILASL---SADEK 77 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~-----~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~-~~~~i~~~---~~~~~ 77 (171)
+++||++||+..+... ++.+++.|.+.||+|+++|++|+|.+.... +++++..+ +.+.++.+ .+..+
T Consensus 62 ~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~----~~~d~~~~~~~~~v~~l~~~~~~~~ 137 (350)
T TIGR01836 62 KTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRYL----TLDDYINGYIDKCVDYICRTSKLDQ 137 (350)
T ss_pred CCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhcC----CHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5679999997644433 468999999999999999999998764332 45555432 33333332 36689
Q ss_pred EEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCC
Q 030815 78 VVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPD 113 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~ 113 (171)
++++||||||.+++.++..++++++++|+++++...
T Consensus 138 i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~ 173 (350)
T TIGR01836 138 ISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDF 173 (350)
T ss_pred ccEEEECHHHHHHHHHHHhCchheeeEEEecccccc
Confidence 999999999999999999999999999999987753
No 59
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.56 E-value=1e-13 Score=99.54 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=75.2
Q ss_pred cCCCeEEEEcCCCCCchhHH---hhHHHHHhCCCeEEEecCCCCCCCCcccc---cc--ccHHHhHHHHHHHHHhc----
Q 030815 5 KKQKHFVLVHGSNHGAWCWY---KVKPQLEAAGHRVTALDLTASGIDMKKIQ---DV--HSFYEYNEPLLEILASL---- 72 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~---~~~~~l~~~g~~v~~~d~~g~g~s~~~~~---~~--~~~~~~~~~~~~~i~~~---- 72 (171)
++.|+||++||.+++...+. .+.+.+.+.|+.|+.||++|++.+..... .. ........++.++++.+
T Consensus 11 ~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 90 (212)
T TIGR01840 11 GPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKANY 90 (212)
T ss_pred CCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHhc
Confidence 45789999999998877665 45666666799999999999874321100 00 00011222222333322
Q ss_pred -CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 73 -SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 73 -~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
.+..+++|+|||+||.+++.++.++|+.+.+++.+++...
T Consensus 91 ~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~ 131 (212)
T TIGR01840 91 SIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPY 131 (212)
T ss_pred CcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcc
Confidence 2446899999999999999999999999999999987764
No 60
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.55 E-value=9.4e-14 Score=103.12 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=90.9
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhC-CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC---CCCcEEE
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAA-GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS---ADEKVVI 80 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~l 80 (171)
.+.|+++++||+.++...|+.+...|... +..++..|.|.||.|...... +...+++|+..+|+... ...+++|
T Consensus 50 ~~~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~h--~~~~ma~dv~~Fi~~v~~~~~~~~~~l 127 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSKENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKITVH--NYEAMAEDVKLFIDGVGGSTRLDPVVL 127 (315)
T ss_pred CCCCceEEecccccCCCCHHHHHHHhcccccCceEEEecccCCCCcccccc--CHHHHHHHHHHHHHHcccccccCCcee
Confidence 36799999999999999999999999765 889999999999999877644 68899999999999883 3678999
Q ss_pred EEeChhH-HHHHHHHHhCCcceeEEEEecccc
Q 030815 81 VGHSLGG-LSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 81 vG~S~Gg-~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
+|||||| .+++..+...|+.+..+|++....
T Consensus 128 ~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP 159 (315)
T KOG2382|consen 128 LGHSMGGVKVAMAETLKKPDLIERLIVEDISP 159 (315)
T ss_pred cccCcchHHHHHHHHHhcCcccceeEEEecCC
Confidence 9999999 777777788899999999887443
No 61
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.52 E-value=8.9e-14 Score=99.86 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=68.6
Q ss_pred CeEEEecCCCCCCCCc---cccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccc
Q 030815 35 HRVTALDLTASGIDMK---KIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 35 ~~v~~~d~~g~g~s~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
|+|+++|+||+|.|+. .....++..+.++++..+++.+ +.++++++||||||.+++.++.++|++++++|+++++
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~ 78 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREAL-GIKKINLVGHSMGGMLALEYAAQYPERVKKLVLISPP 78 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHH-TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESES
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHh-CCCCeEEEEECCChHHHHHHHHHCchhhcCcEEEeee
Confidence 6899999999999985 4445678999999999999999 7777999999999999999999999999999999986
No 62
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=99.51 E-value=2.7e-13 Score=98.18 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=86.6
Q ss_pred CeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhH
Q 030815 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGG 87 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg 87 (171)
++|+++|+.+++...|..+++.+....+.|+.++++|.+...... .+++++++.+.+.|.......++.|+|||+||
T Consensus 1 ~~lf~~p~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~~~~---~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg 77 (229)
T PF00975_consen 1 RPLFCFPPAGGSASSYRPLARALPDDVIGVYGIEYPGRGDDEPPP---DSIEELASRYAEAIRARQPEGPYVLAGWSFGG 77 (229)
T ss_dssp -EEEEESSTTCSGGGGHHHHHHHTTTEEEEEEECSTTSCTTSHEE---SSHHHHHHHHHHHHHHHTSSSSEEEEEETHHH
T ss_pred CeEEEEcCCccCHHHHHHHHHhCCCCeEEEEEEecCCCCCCCCCC---CCHHHHHHHHHHHhhhhCCCCCeeehccCccH
Confidence 479999999999999999999997644899999999998333332 48999999999999887455599999999999
Q ss_pred HHHHHHHHhC---CcceeEEEEeccccCCC
Q 030815 88 LSLALAAEKF---PHKISVAIFLTAFMPDT 114 (171)
Q Consensus 88 ~~a~~~~~~~---~~~~~~~v~~~~~~~~~ 114 (171)
.+|..+|.++ ...+..+++++++.+..
T Consensus 78 ~lA~E~A~~Le~~G~~v~~l~liD~~~p~~ 107 (229)
T PF00975_consen 78 ILAFEMARQLEEAGEEVSRLILIDSPPPSI 107 (229)
T ss_dssp HHHHHHHHHHHHTT-SESEEEEESCSSTTC
T ss_pred HHHHHHHHHHHHhhhccCceEEecCCCCCc
Confidence 9999999876 45589999999776644
No 63
>PLN02872 triacylglycerol lipase
Probab=99.51 E-value=2.8e-14 Score=110.99 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCCCCchhH------HhhHHHHHhCCCeEEEecCCCCCCCCccc--------cccccHHHhH-HHHHHHHH
Q 030815 6 KQKHFVLVHGSNHGAWCW------YKVKPQLEAAGHRVTALDLTASGIDMKKI--------QDVHSFYEYN-EPLLEILA 70 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~------~~~~~~l~~~g~~v~~~d~~g~g~s~~~~--------~~~~~~~~~~-~~~~~~i~ 70 (171)
.+++|+++||++.+...| +.++..|++.||+|+.+|+||++.|.++. ....++.+.+ .|+.++++
T Consensus 73 ~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id 152 (395)
T PLN02872 73 RGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIH 152 (395)
T ss_pred CCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHH
Confidence 368999999999888877 34667788899999999999988653211 0124677776 78888888
Q ss_pred hcC--CCCcEEEEEeChhHHHHHHHHHhCCc---ceeEEEEeccccCC
Q 030815 71 SLS--ADEKVVIVGHSLGGLSLALAAEKFPH---KISVAIFLTAFMPD 113 (171)
Q Consensus 71 ~~~--~~~~~~lvG~S~Gg~~a~~~~~~~~~---~~~~~v~~~~~~~~ 113 (171)
.+. ...+++++|||+||.+++.++ .+|+ +++.+++++|....
T Consensus 153 ~i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~ 199 (395)
T PLN02872 153 YVYSITNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYL 199 (395)
T ss_pred HHHhccCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhh
Confidence 761 347899999999999998655 4564 68888889887653
No 64
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=99.50 E-value=1e-12 Score=95.09 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHh--------CCCeEEEecCCCCCCCCccccccccHHHhHH-HHHHHHHhc----
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEA--------AGHRVTALDLTASGIDMKKIQDVHSFYEYNE-PLLEILASL---- 72 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~--------~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~-~~~~~i~~~---- 72 (171)
.+.+|||+||.+++-.+++.+...+.+ ..++++..|+......-... ......+++. .+..+++..
T Consensus 3 ~g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~-~l~~q~~~~~~~i~~i~~~~~~~~ 81 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGR-TLQRQAEFLAEAIKYILELYKSNR 81 (225)
T ss_pred CCCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCccccccccc-cHHHHHHHHHHHHHHHHHhhhhcc
Confidence 578999999999998888888776632 14778888876542211111 1111222222 222222222
Q ss_pred CCCCcEEEEEeChhHHHHHHHHHhCC---cceeEEEEeccccCCCCCChhHHH
Q 030815 73 SADEKVVIVGHSLGGLSLALAAEKFP---HKISVAIFLTAFMPDTKHQPSYVV 122 (171)
Q Consensus 73 ~~~~~~~lvG~S~Gg~~a~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~ 122 (171)
...+++++|||||||.++..++.... .+++.+|.++.+...........+
T Consensus 82 ~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~g~~~~~d~~~ 134 (225)
T PF07819_consen 82 PPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHRGSPLAFDRSL 134 (225)
T ss_pred CCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCCCccccchHHH
Confidence 36789999999999999999987543 579999999988876654433333
No 65
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.48 E-value=6.3e-13 Score=95.78 Aligned_cols=102 Identities=31% Similarity=0.412 Sum_probs=82.5
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCC--CeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAG--HRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g--~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
.++++++||++++...|......+.... |+++.+|+||||.|. .. .......++++..+++.+ ...+++++|||
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~-~~--~~~~~~~~~~~~~~~~~~-~~~~~~l~G~S 96 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSD-PA--GYSLSAYADDLAALLDAL-GLEKVVLVGHS 96 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccceEEEEecccCCCCCC-cc--cccHHHHHHHHHHHHHHh-CCCceEEEEec
Confidence 4589999999999988877434443321 899999999999997 11 234444588888899988 56669999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
+||.++..++.++|++++++|++++...
T Consensus 97 ~Gg~~~~~~~~~~p~~~~~~v~~~~~~~ 124 (282)
T COG0596 97 MGGAVALALALRHPDRVRGLVLIGPAPP 124 (282)
T ss_pred ccHHHHHHHHHhcchhhheeeEecCCCC
Confidence 9999999999999999999999997654
No 66
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.47 E-value=1.4e-12 Score=95.27 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=94.1
Q ss_pred CeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhH
Q 030815 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGG 87 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg 87 (171)
.+||-+||..++-.+++.+...|.+.|.|++.++|||+|.+.++....++-++...-+.++++.+.-..+++++|||.||
T Consensus 36 gTVv~~hGsPGSH~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~~~~i~~gHSrGc 115 (297)
T PF06342_consen 36 GTVVAFHGSPGSHNDFKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNFVNALLDELGIKGKLIFLGHSRGC 115 (297)
T ss_pred eeEEEecCCCCCccchhhhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHHHHHHHHHcCCCCceEEEEeccch
Confidence 37999999999999999999999999999999999999999988766677777788888888888666899999999999
Q ss_pred HHHHHHHHhCCcceeEEEEeccccCCCCC
Q 030815 88 LSLALAAEKFPHKISVAIFLTAFMPDTKH 116 (171)
Q Consensus 88 ~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (171)
-.|+.++..+| ..|+++++|+......
T Consensus 116 enal~la~~~~--~~g~~lin~~G~r~Hk 142 (297)
T PF06342_consen 116 ENALQLAVTHP--LHGLVLINPPGLRPHK 142 (297)
T ss_pred HHHHHHHhcCc--cceEEEecCCcccccc
Confidence 99999999986 6899999987754433
No 67
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.47 E-value=7.3e-13 Score=109.51 Aligned_cols=90 Identities=23% Similarity=0.185 Sum_probs=73.8
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCcc----------ccc------------cccHHHhHHH
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKK----------IQD------------VHSFYEYNEP 64 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~----------~~~------------~~~~~~~~~~ 64 (171)
.|+||++||++++...|..+++.|.+.||+|+++|+||||.+... ... ..++++.+.|
T Consensus 449 ~P~VVllHG~~g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~D 528 (792)
T TIGR03502 449 WPVVIYQHGITGAKENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQSILD 528 (792)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHHHHH
Confidence 368999999999999999999999988999999999999998332 100 1267888888
Q ss_pred HHHHHHhcC---------------CCCcEEEEEeChhHHHHHHHHHh
Q 030815 65 LLEILASLS---------------ADEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 65 ~~~~i~~~~---------------~~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
+..+...+. +..+++++||||||.++..++..
T Consensus 529 ll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 529 LLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 887766662 14589999999999999999875
No 68
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.46 E-value=3e-13 Score=81.93 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHH
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILA 70 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~ 70 (171)
.+.+|+++||++.+...|..+++.|+++||.|+++|+||||.|........+++++++|+..+++
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccCCHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999877667799999999998874
No 69
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.45 E-value=2.3e-12 Score=96.04 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCCCCchhHHh--hHHHH-HhCCCeEEEecC--CCCCCCCccc-------------------cccccHHHh
Q 030815 6 KQKHFVLVHGSNHGAWCWYK--VKPQL-EAAGHRVTALDL--TASGIDMKKI-------------------QDVHSFYEY 61 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~--~~~~l-~~~g~~v~~~d~--~g~g~s~~~~-------------------~~~~~~~~~ 61 (171)
+.|+|+++||.+++...|.. ....+ .+.|+.|+.||. +|+|.+.... ...+...+.
T Consensus 41 ~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~ 120 (275)
T TIGR02821 41 PVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSY 120 (275)
T ss_pred CCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHHHH
Confidence 46899999999988887743 23344 456999999998 4444322100 001122333
Q ss_pred -HHHHHHHHHhc--CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCC
Q 030815 62 -NEPLLEILASL--SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPD 113 (171)
Q Consensus 62 -~~~~~~~i~~~--~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~ 113 (171)
.+++...++.. .+..++.++||||||.+++.++.++|+.+.+++++++....
T Consensus 121 ~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~ 175 (275)
T TIGR02821 121 IVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAP 175 (275)
T ss_pred HHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCc
Confidence 56666666662 25678999999999999999999999999999999987643
No 70
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=101.60 Aligned_cols=107 Identities=16% Similarity=0.187 Sum_probs=81.5
Q ss_pred cCCCeEEEEcCCCCCchh-------------HHhhHH---HHHhCCCeEEEecCCCCCCCCcc-----------------
Q 030815 5 KKQKHFVLVHGSNHGAWC-------------WYKVKP---QLEAAGHRVTALDLTASGIDMKK----------------- 51 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~-------------~~~~~~---~l~~~g~~v~~~d~~g~g~s~~~----------------- 51 (171)
.+.++||+.|+++++... |..++- .|...-|.|+++|..|.+.|..+
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 346899999999875421 333222 23333589999999987653211
Q ss_pred ---ccccccHHHhHHHHHHHHHhcCCCCcEE-EEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 52 ---IQDVHSFYEYNEPLLEILASLSADEKVV-IVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 52 ---~~~~~~~~~~~~~~~~~i~~~~~~~~~~-lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
..+..+++++++++..+++++ +..++. ++||||||++++.++.++|++++++|++++...
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~l-gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~ 197 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSL-GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQ 197 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHc-CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCC
Confidence 123368999999999999999 777876 999999999999999999999999999987654
No 71
>PRK11460 putative hydrolase; Provisional
Probab=99.42 E-value=3.2e-12 Score=93.05 Aligned_cols=107 Identities=11% Similarity=0.107 Sum_probs=72.0
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCC-------CCCccc---cc---cccHHHhHHHHHHHHHh
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASG-------IDMKKI---QD---VHSFYEYNEPLLEILAS 71 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g-------~s~~~~---~~---~~~~~~~~~~~~~~i~~ 71 (171)
..++.||++||++++...|..+.+.|.+.++.+..++.+|.. .++... .. ...+.+..+.+.+.++.
T Consensus 14 ~~~~~vIlLHG~G~~~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 93 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETVRY 93 (232)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999998766554455445432 111110 00 01122333333343333
Q ss_pred c-----CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 72 L-----SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 72 ~-----~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
+ ....+++++|||+||.+++.++.++++.+.+++.+++..
T Consensus 94 ~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~ 138 (232)
T PRK11460 94 WQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRY 138 (232)
T ss_pred HHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccc
Confidence 2 134689999999999999999999998888888887754
No 72
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.42 E-value=1.4e-12 Score=105.91 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=81.7
Q ss_pred cCCCeEEEEcCCCCCch---hH-HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC----CCC
Q 030815 5 KKQKHFVLVHGSNHGAW---CW-YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS----ADE 76 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~---~~-~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~----~~~ 76 (171)
+..|+||++||++.+.. .+ ....+.+.++||.|+.+|+||+|.|....... . ...++|+.++++.+. ...
T Consensus 20 ~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~-~-~~~~~D~~~~i~~l~~q~~~~~ 97 (550)
T TIGR00976 20 GPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLL-G-SDEAADGYDLVDWIAKQPWCDG 97 (550)
T ss_pred CCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEec-C-cccchHHHHHHHHHHhCCCCCC
Confidence 35689999999986542 12 23556788889999999999999998764322 2 456666666666651 236
Q ss_pred cEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 77 KVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
++.++|+|+||.+++.++..++.+++++|..++...
T Consensus 98 ~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d 133 (550)
T TIGR00976 98 NVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWD 133 (550)
T ss_pred cEEEEEeChHHHHHHHHhccCCCceeEEeecCcccc
Confidence 899999999999999999999999999998877653
No 73
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.41 E-value=2.9e-12 Score=102.73 Aligned_cols=107 Identities=18% Similarity=0.148 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCCCchhHH-----hhHHHHHhCCCeEEEecCCCCCCCCcccc-ccccHHHhHHHHHHHHHhcCCCCcEE
Q 030815 6 KQKHFVLVHGSNHGAWCWY-----KVKPQLEAAGHRVTALDLTASGIDMKKIQ-DVHSFYEYNEPLLEILASLSADEKVV 79 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~-----~~~~~l~~~g~~v~~~d~~g~g~s~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~ 79 (171)
.++|||++||+......|+ .+++.|.++||+|+++|++|+|.+..... ..+..+...+.+..+.+.. +.++++
T Consensus 187 ~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~-g~~kv~ 265 (532)
T TIGR01838 187 HKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAIT-GEKQVN 265 (532)
T ss_pred CCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhc-CCCCeE
Confidence 4689999999987766664 79999999999999999999998754431 1122233344444444445 788999
Q ss_pred EEEeChhHHHHH----HHHHhC-CcceeEEEEeccccCC
Q 030815 80 IVGHSLGGLSLA----LAAEKF-PHKISVAIFLTAFMPD 113 (171)
Q Consensus 80 lvG~S~Gg~~a~----~~~~~~-~~~~~~~v~~~~~~~~ 113 (171)
++||||||.++. .++... ++++++++++++....
T Consensus 266 lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 266 CVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred EEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 999999999852 244454 7789999999987653
No 74
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=99.40 E-value=1.3e-11 Score=91.62 Aligned_cols=112 Identities=14% Similarity=0.266 Sum_probs=95.8
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhC---CCeEEEecCCCCCCCCcc-----ccccccHHHhHHHHHHHHHhc-C----
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAA---GHRVTALDLTASGIDMKK-----IQDVHSFYEYNEPLLEILASL-S---- 73 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~---g~~v~~~d~~g~g~s~~~-----~~~~~~~~~~~~~~~~~i~~~-~---- 73 (171)
+..++|++|..|-...|..+.+.|.++ .+.|++..+.||..+... ....++++++++...++++.. .
T Consensus 2 ~~li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~~ 81 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKNK 81 (266)
T ss_pred cEEEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhcC
Confidence 467999999999999999998888754 789999999999876554 345789999999999999887 2
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCC---cceeEEEEeccccCCCCCCh
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFP---HKISVAIFLTAFMPDTKHQP 118 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~---~~~~~~v~~~~~~~~~~~~~ 118 (171)
...+++|+|||.|++++++++.+++ .+|.+++++-|....-..++
T Consensus 82 ~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~Sp 129 (266)
T PF10230_consen 82 PNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKSP 129 (266)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCCc
Confidence 5678999999999999999999998 78999999999986555554
No 75
>PLN02442 S-formylglutathione hydrolase
Probab=99.39 E-value=1e-11 Score=92.95 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=75.2
Q ss_pred cCCCeEEEEcCCCCCchhHHh---hHHHHHhCCCeEEEecCCCCCC-----CC------cc------c-c-----c--cc
Q 030815 5 KKQKHFVLVHGSNHGAWCWYK---VKPQLEAAGHRVTALDLTASGI-----DM------KK------I-Q-----D--VH 56 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~---~~~~l~~~g~~v~~~d~~g~g~-----s~------~~------~-~-----~--~~ 56 (171)
.+.|+|+++||++++...|.. +.+.+...|+.|+.+|..++|. +. .. . . . .+
T Consensus 45 ~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (283)
T PLN02442 45 GKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDY 124 (283)
T ss_pred CCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhh
Confidence 356899999999888776643 4466677799999999876651 10 00 0 0 0 00
Q ss_pred cHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 57 SFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 57 ~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
-.++..+.+.+..+.+ +..+++++||||||.+++.++.++|+++++++.+++...
T Consensus 125 ~~~~l~~~i~~~~~~~-~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~ 179 (283)
T PLN02442 125 VVKELPKLLSDNFDQL-DTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIAN 179 (283)
T ss_pred HHHHHHHHHHHHHHhc-CCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccC
Confidence 1223333333444444 668899999999999999999999999999999998754
No 76
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.37 E-value=2.1e-12 Score=90.83 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=89.0
Q ss_pred cccCCCeEEEEcCCCCCchhHHhhHHHHH-hCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc--CCCCcEE
Q 030815 3 EAKKQKHFVLVHGSNHGAWCWYKVKPQLE-AAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL--SADEKVV 79 (171)
Q Consensus 3 ~~~~~~~vv~lHG~~~~~~~~~~~~~~l~-~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~ 79 (171)
+++..|+++++|+..++....-.+++.+- ..+.+|+.+++||+|.|++.+. ...+.-.++.+.+.+... .+..+++
T Consensus 74 ~E~S~pTlLyfh~NAGNmGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~Gsps-E~GL~lDs~avldyl~t~~~~dktkiv 152 (300)
T KOG4391|consen 74 SESSRPTLLYFHANAGNMGHRLPIARVFYVNLKMNVLIVSYRGYGKSEGSPS-EEGLKLDSEAVLDYLMTRPDLDKTKIV 152 (300)
T ss_pred ccCCCceEEEEccCCCcccchhhHHHHHHHHcCceEEEEEeeccccCCCCcc-ccceeccHHHHHHHHhcCccCCcceEE
Confidence 45578999999999998877767776654 4489999999999999988763 235555566666555443 3677899
Q ss_pred EEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 80 IVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 80 lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
+.|.|+||.+|..++.+..+++.++|+...+...+
T Consensus 153 lfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp 187 (300)
T KOG4391|consen 153 LFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIP 187 (300)
T ss_pred EEecccCCeeEEEeeccchhheeeeeeechhccch
Confidence 99999999999999999999999999998877653
No 77
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.36 E-value=8.8e-12 Score=89.88 Aligned_cols=104 Identities=16% Similarity=0.312 Sum_probs=83.1
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHh-CCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC-CCCcEEEEEeC
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEA-AGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS-ADEKVVIVGHS 84 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~-~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~lvG~S 84 (171)
.+++++.||...+..++..+...|.. .++.++.+|+.|+|.|.+.+.. ....+.++.+-+.++... +..+|+|+|+|
T Consensus 60 ~~~lly~hGNa~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE-~n~y~Di~avye~Lr~~~g~~~~Iil~G~S 138 (258)
T KOG1552|consen 60 HPTLLYSHGNAADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGKPSE-RNLYADIKAVYEWLRNRYGSPERIILYGQS 138 (258)
T ss_pred ceEEEEcCCcccchHHHHHHHHHHhhcccceEEEEecccccccCCCccc-ccchhhHHHHHHHHHhhcCCCceEEEEEec
Confidence 47899999997666655555555544 3799999999999999888743 356666666666776664 47899999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEeccccCC
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFMPD 113 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~ 113 (171)
+|+..+..+|.+.| ++++|+.+|....
T Consensus 139 iGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 139 IGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred CCchhhhhHhhcCC--cceEEEeccchhh
Confidence 99999999999998 9999999998753
No 78
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.36 E-value=7.5e-12 Score=107.78 Aligned_cols=104 Identities=20% Similarity=0.154 Sum_probs=80.4
Q ss_pred cCCCeEEEEcCCCCCchhHHhh-----HHHHHhCCCeEEEecCCCCCCCCcccc-ccccHHHhHHHHHHHHHhc--CCCC
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKV-----KPQLEAAGHRVTALDLTASGIDMKKIQ-DVHSFYEYNEPLLEILASL--SADE 76 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~-----~~~l~~~g~~v~~~d~~g~g~s~~~~~-~~~~~~~~~~~~~~~i~~~--~~~~ 76 (171)
..+++||++||+..+...|+.. ++.|.+.||+|+++|| |.+..+.. ...++.+++..+.+.++.+ ....
T Consensus 65 ~~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~---G~~~~~~~~~~~~l~~~i~~l~~~l~~v~~~~~~ 141 (994)
T PRK07868 65 PVGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDF---GSPDKVEGGMERNLADHVVALSEAIDTVKDVTGR 141 (994)
T ss_pred CCCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcC---CCCChhHcCccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 3568999999999999989754 8899898999999995 45544322 1246777777777777652 1346
Q ss_pred cEEEEEeChhHHHHHHHHHhC-CcceeEEEEecccc
Q 030815 77 KVVIVGHSLGGLSLALAAEKF-PHKISVAIFLTAFM 111 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~-~~~~~~~v~~~~~~ 111 (171)
+++++||||||.+++.++..+ +++++++|+++++.
T Consensus 142 ~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~ 177 (994)
T PRK07868 142 DVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPV 177 (994)
T ss_pred ceEEEEEChhHHHHHHHHHhcCCCccceEEEEeccc
Confidence 899999999999998887654 56899999988775
No 79
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.35 E-value=2.2e-11 Score=81.82 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=96.5
Q ss_pred CeEEEEcCCCCCch--hHHhhHHHHHhCCCeEEEecCCCCCCCC----ccccccccH-HHhHHHHHHHHHhcCCCCcEEE
Q 030815 8 KHFVLVHGSNHGAW--CWYKVKPQLEAAGHRVTALDLTASGIDM----KKIQDVHSF-YEYNEPLLEILASLSADEKVVI 80 (171)
Q Consensus 8 ~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~g~g~s~----~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~l 80 (171)
-+||+.||.|.+.+ .++.+++.++..|+.|..++++...... +++....+. ..+...+.++-..+ ...+.++
T Consensus 15 ~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~l-~~gpLi~ 93 (213)
T COG3571 15 VTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAGL-AEGPLII 93 (213)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhcc-cCCceee
Confidence 35788899997654 5889999999999999999988754322 122121222 33444444554555 6679999
Q ss_pred EEeChhHHHHHHHHHhCCcceeEEEEeccccCCCCCChhHHHHHHhhcCCCCCCcceeeeecC
Q 030815 81 VGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDTKHQPSYVVERFFERIPSGEWLDTQFSVID 143 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (171)
-|+||||.++..++......|++++|++-++.+.+++.....+.+...-.+..+.+.....|+
T Consensus 94 GGkSmGGR~aSmvade~~A~i~~L~clgYPfhppGKPe~~Rt~HL~gl~tPtli~qGtrD~fG 156 (213)
T COG3571 94 GGKSMGGRVASMVADELQAPIDGLVCLGYPFHPPGKPEQLRTEHLTGLKTPTLITQGTRDEFG 156 (213)
T ss_pred ccccccchHHHHHHHhhcCCcceEEEecCccCCCCCcccchhhhccCCCCCeEEeeccccccc
Confidence 999999999999999887779999999999998888877677776554444444444444444
No 80
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.31 E-value=2.9e-11 Score=90.12 Aligned_cols=106 Identities=20% Similarity=0.163 Sum_probs=70.1
Q ss_pred ccCCCeEEEEcCCCCCchh--HHhhHHHHHhCCCeEEEecCCCCCCCCcccccccc--HHHhHHHHHHHHHhcCCCCcEE
Q 030815 4 AKKQKHFVLVHGSNHGAWC--WYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHS--FYEYNEPLLEILASLSADEKVV 79 (171)
Q Consensus 4 ~~~~~~vv~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 79 (171)
+..+|.||++||+.|+..+ .+.+.+.+.++||.++++++|||+.+.......++ ..+....+.+.++......++.
T Consensus 72 ~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r~~~ 151 (345)
T COG0429 72 AAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPRPLY 151 (345)
T ss_pred ccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCCceE
Confidence 3456899999999766433 57899999999999999999999988654322222 1222233333333334788999
Q ss_pred EEEeChhHH-HHHHHHHhCCc-ceeEEEEecc
Q 030815 80 IVGHSLGGL-SLALAAEKFPH-KISVAIFLTA 109 (171)
Q Consensus 80 lvG~S~Gg~-~a~~~~~~~~~-~~~~~v~~~~ 109 (171)
.||.|+||. ++.+++++..+ .+.+.+.++.
T Consensus 152 avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~ 183 (345)
T COG0429 152 AVGFSLGGNMLANYLGEEGDDLPLDAAVAVSA 183 (345)
T ss_pred EEEecccHHHHHHHHHhhccCcccceeeeeeC
Confidence 999999995 55555554322 2444444443
No 81
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.30 E-value=2.8e-11 Score=83.97 Aligned_cols=91 Identities=26% Similarity=0.377 Sum_probs=65.3
Q ss_pred EEEEcCCCCCc-hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHH
Q 030815 10 FVLVHGSNHGA-WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGL 88 (171)
Q Consensus 10 vv~lHG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~ 88 (171)
|+++||++++. ..|+++.+.--+.-++|..+++ ...+.++|.+.+.+.+... .++++|||||+|+.
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~~~V~~~~~-----------~~P~~~~W~~~l~~~i~~~--~~~~ilVaHSLGc~ 67 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENSVRVEQPDW-----------DNPDLDEWVQALDQAIDAI--DEPTILVAHSLGCL 67 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTSEEEEEC-------------TS--HHHHHHHHHHCCHC---TTTEEEEEETHHHH
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCCeEEecccc-----------CCCCHHHHHHHHHHHHhhc--CCCeEEEEeCHHHH
Confidence 68999998774 5688766544443377777766 1237888998888888876 45699999999999
Q ss_pred HHHHHH-HhCCcceeEEEEeccccCC
Q 030815 89 SLALAA-EKFPHKISVAIFLTAFMPD 113 (171)
Q Consensus 89 ~a~~~~-~~~~~~~~~~v~~~~~~~~ 113 (171)
.+++++ .....++.|+++++|+...
T Consensus 68 ~~l~~l~~~~~~~v~g~lLVAp~~~~ 93 (171)
T PF06821_consen 68 TALRWLAEQSQKKVAGALLVAPFDPD 93 (171)
T ss_dssp HHHHHHHHTCCSSEEEEEEES--SCG
T ss_pred HHHHHHhhcccccccEEEEEcCCCcc
Confidence 999999 7778899999999999763
No 82
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.30 E-value=2.8e-11 Score=88.34 Aligned_cols=108 Identities=23% Similarity=0.144 Sum_probs=80.4
Q ss_pred cccCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc------CCCC
Q 030815 3 EAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL------SADE 76 (171)
Q Consensus 3 ~~~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~------~~~~ 76 (171)
+.++=|++||+||+......|..+.++++++||-|+.+|+....... .........+..+++.+-++.. .+..
T Consensus 13 ~~g~yPVv~f~~G~~~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~-~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s 91 (259)
T PF12740_consen 13 SAGTYPVVLFLHGFLLINSWYSQLLEHVASHGYIVVAPDLYSIGGPD-DTDEVASAAEVIDWLAKGLESKLPLGVKPDFS 91 (259)
T ss_pred CCCCcCEEEEeCCcCCCHHHHHHHHHHHHhCceEEEEecccccCCCC-cchhHHHHHHHHHHHHhcchhhcccccccccc
Confidence 34556899999999988788999999999999999999966543311 1112223444444444433322 2566
Q ss_pred cEEEEEeChhHHHHHHHHHhC-----CcceeEEEEecccc
Q 030815 77 KVVIVGHSLGGLSLALAAEKF-----PHKISVAIFLTAFM 111 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~-----~~~~~~~v~~~~~~ 111 (171)
++.|.|||-||-++..++..+ ..+++.+|+++|..
T Consensus 92 ~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 92 KLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred ceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 899999999999999999887 45899999999987
No 83
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=99.29 E-value=1.5e-11 Score=88.27 Aligned_cols=104 Identities=27% Similarity=0.306 Sum_probs=62.1
Q ss_pred CCeEEEEcCCCC-CchhHHhhHHHHHhCCCe---EEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc---CCCCcEE
Q 030815 7 QKHFVLVHGSNH-GAWCWYKVKPQLEAAGHR---VTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL---SADEKVV 79 (171)
Q Consensus 7 ~~~vv~lHG~~~-~~~~~~~~~~~l~~~g~~---v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~ 79 (171)
+.||||+||.++ ....|..+++.|.+.||. ++.++|-......... ......+.++++.++|+.. .+. +|.
T Consensus 1 ~~PVVlVHG~~~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~-~~~~~~~~~~~l~~fI~~Vl~~TGa-kVD 78 (219)
T PF01674_consen 1 NRPVVLVHGTGGNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGSPSVQ-NAHMSCESAKQLRAFIDAVLAYTGA-KVD 78 (219)
T ss_dssp S--EEEE--TTTTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHHTHHH-HHHB-HHHHHHHHHHHHHHHHHHT---EE
T ss_pred CCCEEEECCCCcchhhCHHHHHHHHHHcCCCcceeEeccCCCCCCCCccc-ccccchhhHHHHHHHHHHHHHhhCC-EEE
Confidence 358999999998 668899999999999999 7999885433221111 1111233445666666554 356 999
Q ss_pred EEEeChhHHHHHHHHHhCC-------------cceeEEEEeccccC
Q 030815 80 IVGHSLGGLSLALAAEKFP-------------HKISVAIFLTAFMP 112 (171)
Q Consensus 80 lvG~S~Gg~~a~~~~~~~~-------------~~~~~~v~~~~~~~ 112 (171)
|||||||+.++..+..... .++...|-++++..
T Consensus 79 IVgHS~G~~iaR~yi~~~~~~d~~~~lg~~~~~~v~t~v~lag~n~ 124 (219)
T PF01674_consen 79 IVGHSMGGTIARYYIKGGGGADKVVNLGPPLTSKVGTFVGLAGANH 124 (219)
T ss_dssp EEEETCHHHHHHHHHHHCTGGGTEEE----GGG-EEEEEEES--TT
T ss_pred EEEcCCcCHHHHHHHHHcCCCCcccCcccccccccccccccccccc
Confidence 9999999999999987542 34666676665543
No 84
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.29 E-value=7e-11 Score=90.78 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=76.7
Q ss_pred cCCCeEEEEcCCCCCch-h-HHhhHHHHHhCCCeEEEecCCCCCCCCccccccc--cHHHhHHHHHHHHHhcCCCCcEEE
Q 030815 5 KKQKHFVLVHGSNHGAW-C-WYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVH--SFYEYNEPLLEILASLSADEKVVI 80 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~-~-~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~l 80 (171)
...|.||++||+.+++. . .+.++....++||++++++.||++.++-.....+ ...+..+.+.+.|++.....++..
T Consensus 123 ~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a~l~a 202 (409)
T KOG1838|consen 123 GTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQAPLFA 202 (409)
T ss_pred CCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCCCceEE
Confidence 45699999999976543 3 4678888889999999999999999876554332 222223333334444447789999
Q ss_pred EEeChhHHHHHHHHHhCCcc---eeEEEEecccc
Q 030815 81 VGHSLGGLSLALAAEKFPHK---ISVAIFLTAFM 111 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~~~~~---~~~~v~~~~~~ 111 (171)
||.||||.+..+++.+-.++ +.++.+.+|+.
T Consensus 203 vG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 203 VGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWD 236 (409)
T ss_pred EEecchHHHHHHHhhhccCCCCceeEEEEeccch
Confidence 99999999999998876433 45555666665
No 85
>PRK10162 acetyl esterase; Provisional
Probab=99.28 E-value=6.5e-11 Score=90.05 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCC---CCchhHHhhHHHHHh-CCCeEEEecCCCCCCCCccccccccHHHh---HHHHHHHHHhcC-CCCc
Q 030815 6 KQKHFVLVHGSN---HGAWCWYKVKPQLEA-AGHRVTALDLTASGIDMKKIQDVHSFYEY---NEPLLEILASLS-ADEK 77 (171)
Q Consensus 6 ~~~~vv~lHG~~---~~~~~~~~~~~~l~~-~g~~v~~~d~~g~g~s~~~~~~~~~~~~~---~~~~~~~i~~~~-~~~~ 77 (171)
..|+||++||.+ ++...|..+.+.|++ .|+.|+.+|||.......+. .+++. .+.+.+..+.+. +..+
T Consensus 80 ~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~~p~----~~~D~~~a~~~l~~~~~~~~~d~~~ 155 (318)
T PRK10162 80 SQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEARFPQ----AIEEIVAVCCYFHQHAEDYGINMSR 155 (318)
T ss_pred CCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCCCCC----cHHHHHHHHHHHHHhHHHhCCChhH
Confidence 458899999987 666778888888877 49999999999644322111 23333 333333333332 4578
Q ss_pred EEEEEeChhHHHHHHHHHhC------CcceeEEEEeccccCC
Q 030815 78 VVIVGHSLGGLSLALAAEKF------PHKISVAIFLTAFMPD 113 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~~------~~~~~~~v~~~~~~~~ 113 (171)
++|+|+|+||.+++.++.+. +.++.++|++.|....
T Consensus 156 i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~ 197 (318)
T PRK10162 156 IGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGL 197 (318)
T ss_pred EEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCC
Confidence 99999999999999998753 3568999999887643
No 86
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.27 E-value=7.1e-11 Score=86.55 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=89.2
Q ss_pred CeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhH
Q 030815 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGG 87 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg 87 (171)
|+++++|+.+|...+|..+...+... ..|+..+.+|.+..... ..+++++++.+.+.|.......+++|+|||+||
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~---~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG 76 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQP---FASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGG 76 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccC-ceeeccccCcccccccc---cCCHHHHHHHHHHHHHHhCCCCCEEEEeecccc
Confidence 57999999999999999999999887 99999999998753222 348999999999999999888899999999999
Q ss_pred HHHHHHHHhC---CcceeEEEEeccccC
Q 030815 88 LSLALAAEKF---PHKISVAIFLTAFMP 112 (171)
Q Consensus 88 ~~a~~~~~~~---~~~~~~~v~~~~~~~ 112 (171)
.+|..+|.++ ...|..+++++++.+
T Consensus 77 ~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 77 AVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred HHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 9999999876 456999999998877
No 87
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.22 E-value=1.1e-10 Score=84.05 Aligned_cols=113 Identities=18% Similarity=0.262 Sum_probs=66.6
Q ss_pred ccCCCeEEEEcCCCCCchhHHhhHHH-HHhCCCeEEEecCCC------CCC---CCccc--------cccccHHHhHHHH
Q 030815 4 AKKQKHFVLVHGSNHGAWCWYKVKPQ-LEAAGHRVTALDLTA------SGI---DMKKI--------QDVHSFYEYNEPL 65 (171)
Q Consensus 4 ~~~~~~vv~lHG~~~~~~~~~~~~~~-l~~~g~~v~~~d~~g------~g~---s~~~~--------~~~~~~~~~~~~~ 65 (171)
...++.||++||+|.+.+.|....+. +......++.++-|. .|. ++.+. .....+.+..+.+
T Consensus 11 ~~~~~lvi~LHG~G~~~~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l 90 (216)
T PF02230_consen 11 GKAKPLVILLHGYGDSEDLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAERL 90 (216)
T ss_dssp ST-SEEEEEE--TTS-HHHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCcchhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHHH
Confidence 34678999999999999777665552 222346666664321 232 33211 0112344444455
Q ss_pred HHHHHhc----CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCCCC
Q 030815 66 LEILASL----SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDTKH 116 (171)
Q Consensus 66 ~~~i~~~----~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (171)
.++|+.. .+..+|++.|+|+||.+++.++.++|..+.++|.++++.+....
T Consensus 91 ~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~ 145 (216)
T PF02230_consen 91 DELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE 145 (216)
T ss_dssp HHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC
T ss_pred HHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc
Confidence 5555543 35678999999999999999999999999999999999875533
No 88
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.22 E-value=8.2e-11 Score=84.37 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=85.2
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
..+..++++|-.|+++..|+.|...|... ..++.+++||.|.--..+ ...+++.+++.+...+......++..+.|||
T Consensus 5 ~~~~~L~cfP~AGGsa~~fr~W~~~lp~~-iel~avqlPGR~~r~~ep-~~~di~~Lad~la~el~~~~~d~P~alfGHS 82 (244)
T COG3208 5 GARLRLFCFPHAGGSASLFRSWSRRLPAD-IELLAVQLPGRGDRFGEP-LLTDIESLADELANELLPPLLDAPFALFGHS 82 (244)
T ss_pred CCCceEEEecCCCCCHHHHHHHHhhCCch-hheeeecCCCcccccCCc-ccccHHHHHHHHHHHhccccCCCCeeecccc
Confidence 45678999999999999999999988774 999999999998764443 3358999999999999842267899999999
Q ss_pred hhHHHHHHHHHhCC---cceeEEEEeccccC
Q 030815 85 LGGLSLALAAEKFP---HKISVAIFLTAFMP 112 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~---~~~~~~v~~~~~~~ 112 (171)
|||++|.++|.++. -.+..+++.+...|
T Consensus 83 mGa~lAfEvArrl~~~g~~p~~lfisg~~aP 113 (244)
T COG3208 83 MGAMLAFEVARRLERAGLPPRALFISGCRAP 113 (244)
T ss_pred hhHHHHHHHHHHHHHcCCCcceEEEecCCCC
Confidence 99999999998752 22666666655444
No 89
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.18 E-value=2.7e-10 Score=100.56 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSL 85 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~ 85 (171)
.+++++++||.+++...|..+.+.|.+ ++.|+.++.+|++.+.. ...+++++++++.+.++.+....+++++||||
T Consensus 1067 ~~~~l~~lh~~~g~~~~~~~l~~~l~~-~~~v~~~~~~g~~~~~~---~~~~l~~la~~~~~~i~~~~~~~p~~l~G~S~ 1142 (1296)
T PRK10252 1067 DGPTLFCFHPASGFAWQFSVLSRYLDP-QWSIYGIQSPRPDGPMQ---TATSLDEVCEAHLATLLEQQPHGPYHLLGYSL 1142 (1296)
T ss_pred CCCCeEEecCCCCchHHHHHHHHhcCC-CCcEEEEECCCCCCCCC---CCCCHHHHHHHHHHHHHhhCCCCCEEEEEech
Confidence 457899999999999999999999976 59999999999986522 23589999999999998874456899999999
Q ss_pred hHHHHHHHHHh---CCcceeEEEEecccc
Q 030815 86 GGLSLALAAEK---FPHKISVAIFLTAFM 111 (171)
Q Consensus 86 Gg~~a~~~~~~---~~~~~~~~v~~~~~~ 111 (171)
||.++..++.+ .+.++..++++++..
T Consensus 1143 Gg~vA~e~A~~l~~~~~~v~~l~l~~~~~ 1171 (1296)
T PRK10252 1143 GGTLAQGIAARLRARGEEVAFLGLLDTWP 1171 (1296)
T ss_pred hhHHHHHHHHHHHHcCCceeEEEEecCCC
Confidence 99999999986 467899999888654
No 90
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=99.16 E-value=3.6e-10 Score=82.30 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=74.4
Q ss_pred cccCCCeEEEEcCCCCCchhH-HhhHHHHHhCCC--eEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc---CCCC
Q 030815 3 EAKKQKHFVLVHGSNHGAWCW-YKVKPQLEAAGH--RVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL---SADE 76 (171)
Q Consensus 3 ~~~~~~~vv~lHG~~~~~~~~-~~~~~~l~~~g~--~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~---~~~~ 76 (171)
..+.+.++||+||+..+-..- ...++.....++ .++.+.||+.|..........+...-...+.++|+.+ ....
T Consensus 14 ~~~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~ 93 (233)
T PF05990_consen 14 KSPDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIK 93 (233)
T ss_pred hCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCc
Confidence 345788999999999875543 333333333333 6999999998864332222224444556666666665 2578
Q ss_pred cEEEEEeChhHHHHHHHHHhC----C-----cceeEEEEeccccC
Q 030815 77 KVVIVGHSLGGLSLALAAEKF----P-----HKISVAIFLTAFMP 112 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~----~-----~~~~~~v~~~~~~~ 112 (171)
+|+|++||||+.+.+.++... . .++..+|+++|-..
T Consensus 94 ~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 94 RIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred eEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 999999999999999997653 1 35788998887664
No 91
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.15 E-value=1.6e-10 Score=89.26 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCCCchhHH-hhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC--CCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGAWCWY-KVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS--ADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~-~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~lvG 82 (171)
..|+||+.-|+-+-..++. -+.+.+.++|+.++++|.||.|.|...+.. .+.+.+...+.+.+.... +..+|.++|
T Consensus 189 p~P~VIv~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~-~D~~~l~~aVLd~L~~~p~VD~~RV~~~G 267 (411)
T PF06500_consen 189 PYPTVIVCGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLT-QDSSRLHQAVLDYLASRPWVDHTRVGAWG 267 (411)
T ss_dssp -EEEEEEE--TTS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S--S-CCHHHHHHHHHHHHSTTEEEEEEEEEE
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCEEEEEccCCCcccccCCCC-cCHHHHHHHHHHHHhcCCccChhheEEEE
Confidence 3456666666666665544 445678899999999999999998643322 123455666666666663 556899999
Q ss_pred eChhHHHHHHHHHhCCcceeEEEEeccccCC
Q 030815 83 HSLGGLSLALAAEKFPHKISVAIFLTAFMPD 113 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~ 113 (171)
.|+||.++.++|..++++++++|++++.+..
T Consensus 268 ~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~ 298 (411)
T PF06500_consen 268 FSFGGYYAVRLAALEDPRLKAVVALGAPVHH 298 (411)
T ss_dssp ETHHHHHHHHHHHHTTTT-SEEEEES---SC
T ss_pred eccchHHHHHHHHhcccceeeEeeeCchHhh
Confidence 9999999999999999999999999998643
No 92
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=99.13 E-value=3.7e-10 Score=88.92 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=71.0
Q ss_pred CchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc---CCCCcEEEEEeChhHHHHHHHHH
Q 030815 19 GAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL---SADEKVVIVGHSLGGLSLALAAE 95 (171)
Q Consensus 19 ~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~lvG~S~Gg~~a~~~~~ 95 (171)
....|..+++.|.+.||.+ ..|++|+|.++.... ...+..+++.+.++.. ....+++|+||||||.++..++.
T Consensus 106 ~~~~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~ 181 (440)
T PLN02733 106 EVYYFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSN---RLPETMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMS 181 (440)
T ss_pred hHHHHHHHHHHHHHcCCcc-CCCcccCCCCccccc---cHHHHHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHH
Confidence 3467899999999999866 789999999877542 2333444444444432 26789999999999999999998
Q ss_pred hCCc----ceeEEEEeccccCCCCC
Q 030815 96 KFPH----KISVAIFLTAFMPDTKH 116 (171)
Q Consensus 96 ~~~~----~~~~~v~~~~~~~~~~~ 116 (171)
.+++ .|+++|.++++..+...
T Consensus 182 ~~p~~~~k~I~~~I~la~P~~Gs~~ 206 (440)
T PLN02733 182 LHSDVFEKYVNSWIAIAAPFQGAPG 206 (440)
T ss_pred HCCHhHHhHhccEEEECCCCCCCch
Confidence 8875 37899999988766543
No 93
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.12 E-value=9e-10 Score=77.56 Aligned_cols=104 Identities=23% Similarity=0.276 Sum_probs=81.5
Q ss_pred cCCCeEEEEcCCCCCch--hHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCc--EEE
Q 030815 5 KKQKHFVLVHGSNHGAW--CWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEK--VVI 80 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~l 80 (171)
+.+..+|++||+-.+.. .+..++..|.+.|+.++.+|++|.|.|..... .-.....++|+...++++.+..+ -++
T Consensus 31 gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~-~Gn~~~eadDL~sV~q~~s~~nr~v~vi 109 (269)
T KOG4667|consen 31 GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFY-YGNYNTEADDLHSVIQYFSNSNRVVPVI 109 (269)
T ss_pred CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccc-cCcccchHHHHHHHHHHhccCceEEEEE
Confidence 45678999999986654 46778999999999999999999999987653 23455556999999999843333 578
Q ss_pred EEeChhHHHHHHHHHhCCcceeEEEEeccc
Q 030815 81 VGHSLGGLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
+|||-||.+++.++.++.+ +.-+|-+++-
T Consensus 110 ~gHSkGg~Vvl~ya~K~~d-~~~viNcsGR 138 (269)
T KOG4667|consen 110 LGHSKGGDVVLLYASKYHD-IRNVINCSGR 138 (269)
T ss_pred EeecCccHHHHHHHHhhcC-chheEEcccc
Confidence 9999999999999999887 5555555543
No 94
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=99.12 E-value=2e-10 Score=87.57 Aligned_cols=112 Identities=20% Similarity=0.246 Sum_probs=69.6
Q ss_pred cCCCeEEEEcCCCCCc--hhH-HhhHHHH-Hh--CCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc-----C
Q 030815 5 KKQKHFVLVHGSNHGA--WCW-YKVKPQL-EA--AGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL-----S 73 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~--~~~-~~~~~~l-~~--~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~-----~ 73 (171)
..+|++|++||+.++. ..| ..+.+.+ .. .++.|+++||....... ............+.+..+|+.+ .
T Consensus 69 ~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~-Y~~a~~n~~~vg~~la~~l~~L~~~~g~ 147 (331)
T PF00151_consen 69 PSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASNN-YPQAVANTRLVGRQLAKFLSFLINNFGV 147 (331)
T ss_dssp TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhcccc-ccchhhhHHHHHHHHHHHHHHHHhhcCC
Confidence 4678999999998776 345 3455544 33 47999999996332211 1111123334444455555444 2
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCc--ceeEEEEeccccCCCCCC
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFPH--KISVAIFLTAFMPDTKHQ 117 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~~--~~~~~v~~~~~~~~~~~~ 117 (171)
...+++|||||+||.+|-.++.+... ++.+|+.++|+.+.....
T Consensus 148 ~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~F~~~ 193 (331)
T PF00151_consen 148 PPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPLFENN 193 (331)
T ss_dssp -GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-TTTTTS
T ss_pred ChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcccccccCC
Confidence 56789999999999999999999887 999999999998865443
No 95
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.11 E-value=8.8e-10 Score=79.41 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=71.1
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCC-CCccc-cccc--------cHHHhHHHHHHHHHhcC-
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGI-DMKKI-QDVH--------SFYEYNEPLLEILASLS- 73 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~-s~~~~-~~~~--------~~~~~~~~~~~~i~~~~- 73 (171)
++.|.||++|+..+-....+.+++.|++.||.|++||+.+-.. ..... .... ..+...+++...++.+.
T Consensus 12 ~~~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~ 91 (218)
T PF01738_consen 12 GPRPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVDYLRA 91 (218)
T ss_dssp SSEEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3578999999998877888899999999999999999865433 11111 0000 12344555655555551
Q ss_pred ----CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEecc
Q 030815 74 ----ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTA 109 (171)
Q Consensus 74 ----~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~ 109 (171)
...+|.++|+|+||.+++.++.+. ..+++.|..-|
T Consensus 92 ~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg 130 (218)
T PF01738_consen 92 QPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYG 130 (218)
T ss_dssp TTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-
T ss_pred ccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcC
Confidence 246899999999999999999887 56888888777
No 96
>COG0400 Predicted esterase [General function prediction only]
Probab=99.10 E-value=7.5e-10 Score=78.86 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=73.0
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCC--CCCC----CCccccccccHHHh---HHHHHHHHHh----
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLT--ASGI----DMKKIQDVHSFYEY---NEPLLEILAS---- 71 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~--g~g~----s~~~~~~~~~~~~~---~~~~~~~i~~---- 71 (171)
+..|.||++||+|++..++-++.+.+... +.++.+.=+ -.|. ++... ...+.++. .+.+.++++.
T Consensus 16 p~~~~iilLHG~Ggde~~~~~~~~~~~P~-~~~is~rG~v~~~g~~~~f~~~~~-~~~d~edl~~~~~~~~~~l~~~~~~ 93 (207)
T COG0400 16 PAAPLLILLHGLGGDELDLVPLPELILPN-ATLVSPRGPVAENGGPRFFRRYDE-GSFDQEDLDLETEKLAEFLEELAEE 93 (207)
T ss_pred CCCcEEEEEecCCCChhhhhhhhhhcCCC-CeEEcCCCCccccCcccceeecCC-CccchhhHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999888877777665 666665211 1110 01111 11122222 2223333332
Q ss_pred c-CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCCC
Q 030815 72 L-SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDTK 115 (171)
Q Consensus 72 ~-~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (171)
. .+..+++++|+|.|+.+++++..+++..++++|+++|..+...
T Consensus 94 ~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~ 138 (207)
T COG0400 94 YGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP 138 (207)
T ss_pred hCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC
Confidence 2 3557999999999999999999999999999999999887654
No 97
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.09 E-value=1.1e-09 Score=87.83 Aligned_cols=106 Identities=12% Similarity=0.186 Sum_probs=82.6
Q ss_pred cCCCeEEEEcCCCCCchhH-----HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc---CCCC
Q 030815 5 KKQKHFVLVHGSNHGAWCW-----YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL---SADE 76 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~-----~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~---~~~~ 76 (171)
..++|||+++.+-...-.+ +.+++.|.++|++|+.+||+.-+.... ..+++++++.+.+.++.+ .+.+
T Consensus 213 v~~~PLLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~r----~~~ldDYv~~i~~Ald~V~~~tG~~ 288 (560)
T TIGR01839 213 QHARPLLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAHR----EWGLSTYVDALKEAVDAVRAITGSR 288 (560)
T ss_pred cCCCcEEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCChhhc----CCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3467899999987443333 579999999999999999998665432 237788887777777665 4678
Q ss_pred cEEEEEeChhHHHHHH----HHHhCCc-ceeEEEEeccccCCC
Q 030815 77 KVVIVGHSLGGLSLAL----AAEKFPH-KISVAIFLTAFMPDT 114 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~----~~~~~~~-~~~~~v~~~~~~~~~ 114 (171)
+++++|||+||.++.. ++.++++ +|+.++++.++....
T Consensus 289 ~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 289 DLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred CeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccC
Confidence 9999999999998886 6777775 799999999877533
No 98
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.07 E-value=8.5e-10 Score=78.86 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=65.0
Q ss_pred EEEEcCCC---CCchhHHhhHHHHHh-CCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc----CCCCcEEEE
Q 030815 10 FVLVHGSN---HGAWCWYKVKPQLEA-AGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL----SADEKVVIV 81 (171)
Q Consensus 10 vv~lHG~~---~~~~~~~~~~~~l~~-~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~lv 81 (171)
||++||.+ ++......+...+.+ .|+.|+.+|||=.. ... ....+++..+.+..+++.. .+..+|+++
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p---~~~-~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~ 76 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAP---EAP-FPAALEDVKAAYRWLLKNADKLGIDPERIVLI 76 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TT---TSS-TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccc---ccc-ccccccccccceeeeccccccccccccceEEe
Confidence 79999987 444445566666664 79999999999432 221 1123444444444445541 256799999
Q ss_pred EeChhHHHHHHHHHhCCc----ceeEEEEeccccCC
Q 030815 82 GHSLGGLSLALAAEKFPH----KISVAIFLTAFMPD 113 (171)
Q Consensus 82 G~S~Gg~~a~~~~~~~~~----~~~~~v~~~~~~~~ 113 (171)
|+|.||.+++.++....+ .++++++++|....
T Consensus 77 G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 77 GDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp EETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred ecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 999999999999875433 49999999997643
No 99
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.07 E-value=3.1e-09 Score=73.56 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=71.4
Q ss_pred cCCCeEEEEcCCC---C--CchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCc-E
Q 030815 5 KKQKHFVLVHGSN---H--GAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEK-V 78 (171)
Q Consensus 5 ~~~~~vv~lHG~~---~--~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 78 (171)
...+..|++|.-. + +...-+.++..|.+.|+.++.+|+||.|+|.+..+.-..-.+.+....+.++......+ .
T Consensus 26 ~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp~s~~~ 105 (210)
T COG2945 26 PAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHPDSASC 105 (210)
T ss_pred CCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhhCCCchhh
Confidence 4567778887643 3 23446788999999999999999999999987764322222233333344444423344 4
Q ss_pred EEEEeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 79 VIVGHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 79 ~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
.+.|+|+|++|++.++.+.++ ....+.++|+.
T Consensus 106 ~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~ 137 (210)
T COG2945 106 WLAGFSFGAYIAMQLAMRRPE-ILVFISILPPI 137 (210)
T ss_pred hhcccchHHHHHHHHHHhccc-ccceeeccCCC
Confidence 789999999999999999876 34444444443
No 100
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.05 E-value=1.6e-09 Score=82.08 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCCCCchhHH-------hhHHHHHhCC-------CeEEEecCCCCC-CCCccc----c--------ccccH
Q 030815 6 KQKHFVLVHGSNHGAWCWY-------KVKPQLEAAG-------HRVTALDLTASG-IDMKKI----Q--------DVHSF 58 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~-------~~~~~l~~~g-------~~v~~~d~~g~g-~s~~~~----~--------~~~~~ 58 (171)
...+|+++|++.++..... .|++.+-.-| |-||++|..|.. .|+.+. . +..++
T Consensus 50 ~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti 129 (368)
T COG2021 50 KDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITI 129 (368)
T ss_pred CCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccH
Confidence 3568999999998665443 3666664333 789999988754 333221 1 33578
Q ss_pred HHhHHHHHHHHHhcCCCCcEE-EEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 59 YEYNEPLLEILASLSADEKVV-IVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 59 ~~~~~~~~~~i~~~~~~~~~~-lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
.|+++.-..+++.+ +.+++. +||-||||+.++.++..+|++++.+|.+++.....
T Consensus 130 ~D~V~aq~~ll~~L-GI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s 185 (368)
T COG2021 130 RDMVRAQRLLLDAL-GIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLS 185 (368)
T ss_pred HHHHHHHHHHHHhc-CcceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCC
Confidence 89988888888999 666655 99999999999999999999999999999865433
No 101
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=99.04 E-value=3e-09 Score=72.71 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=72.2
Q ss_pred CCeEEEEcCCCCCc-hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh
Q 030815 7 QKHFVLVHGSNHGA-WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSL 85 (171)
Q Consensus 7 ~~~vv~lHG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~ 85 (171)
.+.+|++||++++. ..|+...+.--.. .+ .++.. .......++|++.+.+.+... .++++||+||+
T Consensus 2 ~~~~lIVpG~~~Sg~~HWq~~we~~l~~-a~--rveq~--------~w~~P~~~dWi~~l~~~v~a~--~~~~vlVAHSL 68 (181)
T COG3545 2 MTDVLIVPGYGGSGPNHWQSRWESALPN-AR--RVEQD--------DWEAPVLDDWIARLEKEVNAA--EGPVVLVAHSL 68 (181)
T ss_pred CceEEEecCCCCCChhHHHHHHHhhCcc-ch--hcccC--------CCCCCCHHHHHHHHHHHHhcc--CCCeEEEEecc
Confidence 35699999998665 5687766543221 22 22221 113457999999999999888 46699999999
Q ss_pred hHHHHHHHHHhCCcceeEEEEeccccCCCC
Q 030815 86 GGLSLALAAEKFPHKISVAIFLTAFMPDTK 115 (171)
Q Consensus 86 Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (171)
|+..+.+++.+....|+|+++++|+.....
T Consensus 69 Gc~~v~h~~~~~~~~V~GalLVAppd~~~~ 98 (181)
T COG3545 69 GCATVAHWAEHIQRQVAGALLVAPPDVSRP 98 (181)
T ss_pred cHHHHHHHHHhhhhccceEEEecCCCcccc
Confidence 999999999998889999999999886554
No 102
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.03 E-value=1.2e-09 Score=84.75 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=61.9
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCC------cc----c--------------ccc-----
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDM------KK----I--------------QDV----- 55 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~------~~----~--------------~~~----- 55 (171)
++-|+|||-||+++++..|..+...|+++||-|+++|+|...... .. . ...
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPEEE 177 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GGGH
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccchhH
Confidence 345899999999999999999999999999999999999642210 00 0 000
Q ss_pred -----ccHHHhHHHHHHHHHhc---C----------------------CCCcEEEEEeChhHHHHHHHHHhCCcceeEEE
Q 030815 56 -----HSFYEYNEPLLEILASL---S----------------------ADEKVVIVGHSLGGLSLALAAEKFPHKISVAI 105 (171)
Q Consensus 56 -----~~~~~~~~~~~~~i~~~---~----------------------~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v 105 (171)
..++..++++...++.+ . +..+|.++|||+||..+..++.+- .++++.|
T Consensus 178 ~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~~I 256 (379)
T PF03403_consen 178 FELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKAGI 256 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcceEE
Confidence 01111122233232222 0 134699999999999999887765 6799999
Q ss_pred EeccccCCC
Q 030815 106 FLTAFMPDT 114 (171)
Q Consensus 106 ~~~~~~~~~ 114 (171)
+++|++.+.
T Consensus 257 ~LD~W~~Pl 265 (379)
T PF03403_consen 257 LLDPWMFPL 265 (379)
T ss_dssp EES---TTS
T ss_pred EeCCcccCC
Confidence 999998654
No 103
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.03 E-value=1.4e-09 Score=78.70 Aligned_cols=111 Identities=21% Similarity=0.152 Sum_probs=83.3
Q ss_pred cccCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc------CCCC
Q 030815 3 EAKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL------SADE 76 (171)
Q Consensus 3 ~~~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~------~~~~ 76 (171)
+++.=|+|+|+||+.-....|..+..+++.+||-|+++++-..-. ........+....++++.+-+++. .+..
T Consensus 42 ~~G~yPVilF~HG~~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~ 120 (307)
T PF07224_consen 42 EAGTYPVILFLHGFNLYNSFYSQLLAHIASHGFIVVAPQLYTLFP-PDGQDEIKSAASVINWLPEGLQHVLPENVEANLS 120 (307)
T ss_pred cCCCccEEEEeechhhhhHHHHHHHHHHhhcCeEEEechhhcccC-CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccc
Confidence 345668999999999999999999999999999999999864321 111222234455556666666554 2567
Q ss_pred cEEEEEeChhHHHHHHHHHhCC--cceeEEEEeccccCCC
Q 030815 77 KVVIVGHSLGGLSLALAAEKFP--HKISVAIFLTAFMPDT 114 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~--~~~~~~v~~~~~~~~~ 114 (171)
++.++|||.||-.|..+|..+. -++..+|-++|..-..
T Consensus 121 klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~ 160 (307)
T PF07224_consen 121 KLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTS 160 (307)
T ss_pred eEEEeecCCccHHHHHHHhcccccCchhheecccccCCCC
Confidence 8999999999999999998774 3588999888876443
No 104
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=99.03 E-value=3.2e-09 Score=77.99 Aligned_cols=109 Identities=23% Similarity=0.323 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHH-hCCC--eEEEec--CCC----CCC-C--Cccc------cc-c-ccHHHhHHHH
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLE-AAGH--RVTALD--LTA----SGI-D--MKKI------QD-V-HSFYEYNEPL 65 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~-~~g~--~v~~~d--~~g----~g~-s--~~~~------~~-~-~~~~~~~~~~ 65 (171)
...|.||+||++++...+..++..+. +.|. .++.++ --| .|. + ...+ .. . .+....++++
T Consensus 10 ~~tPTifihG~~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl 89 (255)
T PF06028_consen 10 STTPTIFIHGYGGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWL 89 (255)
T ss_dssp S-EEEEEE--TTGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHH
T ss_pred CCCcEEEECCCCCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHH
Confidence 46789999999999999999999997 5543 344332 222 111 0 1110 01 1 2455556665
Q ss_pred HHHHHhc---CCCCcEEEEEeChhHHHHHHHHHhCCc-----ceeEEEEeccccCCC
Q 030815 66 LEILASL---SADEKVVIVGHSLGGLSLALAAEKFPH-----KISVAIFLTAFMPDT 114 (171)
Q Consensus 66 ~~~i~~~---~~~~~~~lvG~S~Gg~~a~~~~~~~~~-----~~~~~v~~~~~~~~~ 114 (171)
..++..+ ....++.+|||||||..+..++..+.. ++.++|.|+++....
T Consensus 90 ~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~ 146 (255)
T PF06028_consen 90 KKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGI 146 (255)
T ss_dssp HHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTT
T ss_pred HHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcc
Confidence 5555555 578899999999999999999988642 589999999888654
No 105
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.02 E-value=6.5e-09 Score=73.08 Aligned_cols=87 Identities=23% Similarity=0.372 Sum_probs=66.1
Q ss_pred EEEEcCCCCCchhHH--hhHHHHHhCC--CeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh
Q 030815 10 FVLVHGSNHGAWCWY--KVKPQLEAAG--HRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSL 85 (171)
Q Consensus 10 vv~lHG~~~~~~~~~--~~~~~l~~~g--~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~ 85 (171)
++++||+..+..+.+ .+.+.+.+.+ ..+.+++++ ...+...+.+.+.++.. ....+.|||.||
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~------------~~p~~a~~~l~~~i~~~-~~~~~~liGSSl 68 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP------------PFPEEAIAQLEQLIEEL-KPENVVLIGSSL 68 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC------------cCHHHHHHHHHHHHHhC-CCCCeEEEEECh
Confidence 799999998887654 4566676654 455666654 24566677888888888 555699999999
Q ss_pred hHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 86 GGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 86 Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
||+.|..++.+++ +.. |++.|+..
T Consensus 69 GG~~A~~La~~~~--~~a-vLiNPav~ 92 (187)
T PF05728_consen 69 GGFYATYLAERYG--LPA-VLINPAVR 92 (187)
T ss_pred HHHHHHHHHHHhC--CCE-EEEcCCCC
Confidence 9999999999986 333 78998875
No 106
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=99.01 E-value=6.5e-09 Score=74.99 Aligned_cols=111 Identities=22% Similarity=0.164 Sum_probs=63.8
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhC--CCeEEEecCCCCCCCCccccccccHHHhHH----HHHHHHHhcCC-CCc
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAA--GHRVTALDLTASGIDMKKIQDVHSFYEYNE----PLLEILASLSA-DEK 77 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~--g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~----~~~~~i~~~~~-~~~ 77 (171)
.+...|||+||+.++..+|..+.+.+... .+.-..+...+.......+ ...++..++ ++.+.++.... ..+
T Consensus 2 ~~~hLvV~vHGL~G~~~d~~~~~~~l~~~~~~~~~~~i~~~~~~~n~~~T--~~gI~~~g~rL~~eI~~~~~~~~~~~~~ 79 (217)
T PF05057_consen 2 KPVHLVVFVHGLWGNPADMRYLKNHLEKIPEDLPNARIVVLGYSNNEFKT--FDGIDVCGERLAEEILEHIKDYESKIRK 79 (217)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHHHhhhhcchhhhhhhccccccccc--chhhHHHHHHHHHHHHHhcccccccccc
Confidence 35678999999999999998888877662 1211111222211111111 123444444 44444444422 258
Q ss_pred EEEEEeChhHHHHHHHHHhCCc------------ceeEEEEeccccCCCCCC
Q 030815 78 VVIVGHSLGGLSLALAAEKFPH------------KISVAIFLTAFMPDTKHQ 117 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~~~~------------~~~~~v~~~~~~~~~~~~ 117 (171)
+++|||||||.++..++..... ++...+.+++|-.+....
T Consensus 80 IsfIgHSLGGli~r~al~~~~~~~~~~~~~~~~~~~~~fitlatPH~G~~~~ 131 (217)
T PF05057_consen 80 ISFIGHSLGGLIARYALGLLHDKPQYFPGFFQKIKPHNFITLATPHLGSRYA 131 (217)
T ss_pred ceEEEecccHHHHHHHHHHhhhccccccccccceeeeeEEEeCCCCCCCccc
Confidence 9999999999999888764321 233455566665544333
No 107
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.99 E-value=1.3e-08 Score=74.23 Aligned_cols=105 Identities=21% Similarity=0.139 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCC-CCCCccc--c-c-------cccHHHhHHHHHHHHHhc---
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTAS-GIDMKKI--Q-D-------VHSFYEYNEPLLEILASL--- 72 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~-g~s~~~~--~-~-------~~~~~~~~~~~~~~i~~~--- 72 (171)
.|.||++|+..+-....+.+++.|+..||.+++||+.+. |.+.... . . .....+...++...++.+
T Consensus 27 ~P~VIv~hei~Gl~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~ 106 (236)
T COG0412 27 FPGVIVLHEIFGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQ 106 (236)
T ss_pred CCEEEEEecccCCchHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhC
Confidence 389999999999888999999999999999999998763 3222111 0 0 011245566666666666
Q ss_pred --CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 73 --SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 73 --~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
.+..+|.++|+||||.+++.++.+.| .+++.++.-+...
T Consensus 107 ~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~ 147 (236)
T COG0412 107 PQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLI 147 (236)
T ss_pred CCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCC
Confidence 13567999999999999999999877 5777777766554
No 108
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.99 E-value=2.8e-09 Score=76.47 Aligned_cols=94 Identities=19% Similarity=0.157 Sum_probs=64.1
Q ss_pred HHhhHHHHHhCCCeEEEecCCCCCCCCcccc---ccccHHHhHHHHHHHHHhc-----CCCCcEEEEEeChhHHHHHHHH
Q 030815 23 WYKVKPQLEAAGHRVTALDLTASGIDMKKIQ---DVHSFYEYNEPLLEILASL-----SADEKVVIVGHSLGGLSLALAA 94 (171)
Q Consensus 23 ~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~---~~~~~~~~~~~~~~~i~~~-----~~~~~~~lvG~S~Gg~~a~~~~ 94 (171)
|......|+++||.|+.+|+||.+....... ....-....+|+.+.++.+ .+.++|.++|+|+||.++..++
T Consensus 3 f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~ 82 (213)
T PF00326_consen 3 FNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAA 82 (213)
T ss_dssp -SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhh
Confidence 4456678889999999999999874322110 1112233445555555444 2567899999999999999999
Q ss_pred HhCCcceeEEEEeccccCCCCC
Q 030815 95 EKFPHKISVAIFLTAFMPDTKH 116 (171)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~ 116 (171)
.++|+.++++|..+|.......
T Consensus 83 ~~~~~~f~a~v~~~g~~d~~~~ 104 (213)
T PF00326_consen 83 TQHPDRFKAAVAGAGVSDLFSY 104 (213)
T ss_dssp HHTCCGSSEEEEESE-SSTTCS
T ss_pred cccceeeeeeeccceecchhcc
Confidence 9999999999999987654433
No 109
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.95 E-value=1.2e-08 Score=75.98 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=68.1
Q ss_pred CCCeEEEEcCCCCCc---hhHHhhHHHHHhCCCeEEEecCC----CCCCCCccccccccHHHhHHHHHHHHHhcC-----
Q 030815 6 KQKHFVLVHGSNHGA---WCWYKVKPQLEAAGHRVTALDLT----ASGIDMKKIQDVHSFYEYNEPLLEILASLS----- 73 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~---~~~~~~~~~l~~~g~~v~~~d~~----g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~----- 73 (171)
.+..|||+.|++.+. .....+++.|.+.|+.++.+.+. |+|. .++++.++++.+.++.++
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~--------~SL~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGT--------SSLDRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S----------HHHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCc--------chhhhHHHHHHHHHHHHHHhhcc
Confidence 466899999998654 34678999998789999999765 4443 377888888887777661
Q ss_pred --CCCcEEEEEeChhHHHHHHHHHhCC-----cceeEEEEeccccCCCCC
Q 030815 74 --ADEKVVIVGHSLGGLSLALAAEKFP-----HKISVAIFLTAFMPDTKH 116 (171)
Q Consensus 74 --~~~~~~lvG~S~Gg~~a~~~~~~~~-----~~~~~~v~~~~~~~~~~~ 116 (171)
...+|+|+|||.|++-+++++.... ..|+|+|+-+|.......
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~ 153 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAI 153 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTST
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHh
Confidence 3568999999999999999988753 569999999997654433
No 110
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.92 E-value=5.3e-08 Score=70.11 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCCCCchhHHh---hHHHHHhCCCeEEEecCCCCC---CCCccc-cccccHHHhHHHHHHHHHhc-----C
Q 030815 6 KQKHFVLVHGSNHGAWCWYK---VKPQLEAAGHRVTALDLTASG---IDMKKI-QDVHSFYEYNEPLLEILASL-----S 73 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~---~~~~l~~~g~~v~~~d~~g~g---~s~~~~-~~~~~~~~~~~~~~~~i~~~-----~ 73 (171)
+.|.||++||.+.+.+.+.. +.+.-.+.||-|+.|+-.... ..+... .....-......+..+++.+ -
T Consensus 15 ~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~~~i 94 (220)
T PF10503_consen 15 PVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAARYNI 94 (220)
T ss_pred CCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhhccc
Confidence 45899999999998876543 233333458888888743211 001000 00000111122223333322 3
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
+..+|.+.|+|.||.++..++..+|+.+.++...++.....
T Consensus 95 D~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~ 135 (220)
T PF10503_consen 95 DPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGC 135 (220)
T ss_pred CCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccccc
Confidence 67899999999999999999999999999998888765433
No 111
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.91 E-value=2.3e-09 Score=88.35 Aligned_cols=101 Identities=23% Similarity=0.202 Sum_probs=71.3
Q ss_pred CeEEEEcCCCCCch--hHHhhHHHHHhCCCeEEEecCCCCCCCCc---c----ccccccHHHhHHHHHHHHHhc--CCCC
Q 030815 8 KHFVLVHGSNHGAW--CWYKVKPQLEAAGHRVTALDLTASGIDMK---K----IQDVHSFYEYNEPLLEILASL--SADE 76 (171)
Q Consensus 8 ~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~g~g~s~~---~----~~~~~~~~~~~~~~~~~i~~~--~~~~ 76 (171)
|+||++||...... .+....+.|...||.|+.+++||.+.-.. . .......++..+.+. .++.. .+..
T Consensus 395 P~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ 473 (620)
T COG1506 395 PLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD-ALVKLPLVDPE 473 (620)
T ss_pred CEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH-HHHhCCCcChH
Confidence 89999999975443 46678889999999999999997543211 1 111124445554444 44444 2556
Q ss_pred cEEEEEeChhHHHHHHHHHhCCcceeEEEEeccc
Q 030815 77 KVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
++.+.|+|+||++++.++.+.+ .+++.+...+.
T Consensus 474 ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~ 506 (620)
T COG1506 474 RIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGG 506 (620)
T ss_pred HeEEeccChHHHHHHHHHhcCc-hhheEEeccCc
Confidence 8999999999999999999988 56666666653
No 112
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.89 E-value=3e-08 Score=75.27 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=74.7
Q ss_pred cCCCeEEEEcCCC---CCchhH-HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc----CCCC
Q 030815 5 KKQKHFVLVHGSN---HGAWCW-YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL----SADE 76 (171)
Q Consensus 5 ~~~~~vv~lHG~~---~~~~~~-~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~----~~~~ 76 (171)
.+.|+||++||.+ ++.... ..+...+...|+.|+.+|||-. .+.+ ....+++..+.+....++. .+.+
T Consensus 77 ~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrla---Pe~~-~p~~~~d~~~a~~~l~~~~~~~g~dp~ 152 (312)
T COG0657 77 ATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLA---PEHP-FPAALEDAYAAYRWLRANAAELGIDPS 152 (312)
T ss_pred CCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCC---CCCC-CCchHHHHHHHHHHHHhhhHhhCCCcc
Confidence 3579999999987 455555 4555666677999999999943 3332 1224555444444444332 2578
Q ss_pred cEEEEEeChhHHHHHHHHHhCCc----ceeEEEEeccccCCCC
Q 030815 77 KVVIVGHSLGGLSLALAAEKFPH----KISVAIFLTAFMPDTK 115 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~~----~~~~~v~~~~~~~~~~ 115 (171)
+|.++|+|-||.+++.++....+ .....+++.|......
T Consensus 153 ~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 153 RIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred ceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 89999999999999999876543 4788999999876554
No 113
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=98.89 E-value=5.5e-08 Score=74.09 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=82.5
Q ss_pred cCCCeEEEEcCCC---CC--chhHHhhHHHHHh-CCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHh-----cC
Q 030815 5 KKQKHFVLVHGSN---HG--AWCWYKVKPQLEA-AGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILAS-----LS 73 (171)
Q Consensus 5 ~~~~~vv~lHG~~---~~--~~~~~~~~~~l~~-~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~-----~~ 73 (171)
+..|.|||+||.| ++ ...+..+...+++ .+..|+.+||| ++++++.+ ...+|..+.+..+.++ -.
T Consensus 88 ~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYR---LAPEh~~P-a~y~D~~~Al~w~~~~~~~~~~~ 163 (336)
T KOG1515|consen 88 TKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYR---LAPEHPFP-AAYDDGWAALKWVLKNSWLKLGA 163 (336)
T ss_pred cCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcc---cCCCCCCC-ccchHHHHHHHHHHHhHHHHhCC
Confidence 4678999999998 33 4567777777744 48889999998 55555422 3566666666655554 24
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhC------CcceeEEEEeccccCCCCCChh
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKF------PHKISVAIFLTAFMPDTKHQPS 119 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~ 119 (171)
+.+++.|+|-|.||.+|..++.+. +.++++.|++-|.+........
T Consensus 164 D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~ 215 (336)
T KOG1515|consen 164 DPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTES 215 (336)
T ss_pred CcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCH
Confidence 778899999999999999998764 3579999999999977665544
No 114
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.86 E-value=1.2e-08 Score=78.14 Aligned_cols=106 Identities=23% Similarity=0.265 Sum_probs=81.3
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCe---EEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEe
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHR---VTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGH 83 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~---v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~ 83 (171)
.-+++++||++.+...|..+...+...|+. +..+++++. ....+. ....+++...+.+.+... ..+++.++||
T Consensus 59 ~~pivlVhG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~--~~~~~ql~~~V~~~l~~~-ga~~v~LigH 134 (336)
T COG1075 59 KEPIVLVHGLGGGYGNFLPLDYRLAILGWLTNGVYAFELSGG-DGTYSL--AVRGEQLFAYVDEVLAKT-GAKKVNLIGH 134 (336)
T ss_pred CceEEEEccCcCCcchhhhhhhhhcchHHHhccccccccccc-CCCccc--cccHHHHHHHHHHHHhhc-CCCceEEEee
Confidence 458999999988888899888888877777 777777755 111111 124555666666666666 6799999999
Q ss_pred ChhHHHHHHHHHhCC--cceeEEEEeccccCCCCC
Q 030815 84 SLGGLSLALAAEKFP--HKISVAIFLTAFMPDTKH 116 (171)
Q Consensus 84 S~Gg~~a~~~~~~~~--~~~~~~v~~~~~~~~~~~ 116 (171)
||||.++.+++..++ .+++.++.++++-.....
T Consensus 135 S~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~Gt~~ 169 (336)
T COG1075 135 SMGGLDSRYYLGVLGGANRVASVVTLGTPHHGTEL 169 (336)
T ss_pred cccchhhHHHHhhcCccceEEEEEEeccCCCCchh
Confidence 999999999999988 889999999987655433
No 115
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.85 E-value=2.9e-08 Score=73.93 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=74.2
Q ss_pred ccCCCeEEEEcCCCCCc-h--hHHh-------hHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc-
Q 030815 4 AKKQKHFVLVHGSNHGA-W--CWYK-------VKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL- 72 (171)
Q Consensus 4 ~~~~~~vv~lHG~~~~~-~--~~~~-------~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~- 72 (171)
.++-|+||..|+++.+. . .... ....+.++||.|+..|.||.|.|....... ..+..+|..+.|+.+
T Consensus 17 ~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~--~~~e~~D~~d~I~W~~ 94 (272)
T PF02129_consen 17 GGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM--SPNEAQDGYDTIEWIA 94 (272)
T ss_dssp SSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT--SHHHHHHHHHHHHHHH
T ss_pred CCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC--ChhHHHHHHHHHHHHH
Confidence 34568899999998653 1 1111 122388999999999999999998876431 444555555555554
Q ss_pred ---CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 73 ---SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 73 ---~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
....+|.++|.|++|..++.+|...|..+++++...+.....
T Consensus 95 ~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~ 139 (272)
T PF02129_consen 95 AQPWSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLY 139 (272)
T ss_dssp HCTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTC
T ss_pred hCCCCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCccc
Confidence 245689999999999999999998888899999887765433
No 116
>PRK10115 protease 2; Provisional
Probab=98.83 E-value=1.5e-08 Score=84.31 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=81.1
Q ss_pred cCCCeEEEEcCCCCCc--hhHHhhHHHHHhCCCeEEEecCCCCCCC---Ccc----ccccccHHHhHHHHHHHHHhc-CC
Q 030815 5 KKQKHFVLVHGSNHGA--WCWYKVKPQLEAAGHRVTALDLTASGID---MKK----IQDVHSFYEYNEPLLEILASL-SA 74 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~g~g~s---~~~----~~~~~~~~~~~~~~~~~i~~~-~~ 74 (171)
++.|.||++||..+.. ..|......|.++||.|+.++.||-|.= ... .....+++|..+.+..+++.- .+
T Consensus 443 ~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d 522 (686)
T PRK10115 443 GHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGS 522 (686)
T ss_pred CCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Confidence 4569999999987655 3466777788889999999999985432 211 111235566665555555443 46
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 75 DEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
..++.+.|.|.||+++..++.+.|+.++++|+..|...
T Consensus 523 ~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D 560 (686)
T PRK10115 523 PSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVD 560 (686)
T ss_pred hHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchh
Confidence 78999999999999999999999999999999888764
No 117
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.83 E-value=4.2e-08 Score=74.23 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=71.6
Q ss_pred cCCCeEEEEcCCCCCc-hhHHhhHHHHHhCCC--eEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc---CCCCcE
Q 030815 5 KKQKHFVLVHGSNHGA-WCWYKVKPQLEAAGH--RVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL---SADEKV 78 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~-~~~~~~~~~l~~~g~--~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~ 78 (171)
..+.+++|+||+..+= +.-...++.....|+ ..+.+.||..|.--....+..+.+.-..++...|+.+ ....+|
T Consensus 114 ~~k~vlvFvHGfNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I 193 (377)
T COG4782 114 SAKTVLVFVHGFNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRI 193 (377)
T ss_pred CCCeEEEEEcccCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCceE
Confidence 4678999999998653 334455666655554 5678899987754333322223333344455555554 357789
Q ss_pred EEEEeChhHHHHHHHHHhC--------CcceeEEEEecccc
Q 030815 79 VIVGHSLGGLSLALAAEKF--------PHKISVAIFLTAFM 111 (171)
Q Consensus 79 ~lvG~S~Gg~~a~~~~~~~--------~~~~~~~v~~~~~~ 111 (171)
+|++||||.+++++++++. +.++.-+|+.+|=.
T Consensus 194 ~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDi 234 (377)
T COG4782 194 YLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDI 234 (377)
T ss_pred EEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCC
Confidence 9999999999999998865 34577888777544
No 118
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=98.83 E-value=3.3e-09 Score=74.16 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCCC-chhHHhhHHHHHhC-CCeEEEecCCCCCCCCccccc--cccHHHhHHHHHHHHHhcCCCCcEEEE
Q 030815 6 KQKHFVLVHGSNHG-AWCWYKVKPQLEAA-GHRVTALDLTASGIDMKKIQD--VHSFYEYNEPLLEILASLSADEKVVIV 81 (171)
Q Consensus 6 ~~~~vv~lHG~~~~-~~~~~~~~~~l~~~-g~~v~~~d~~g~g~s~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~lv 81 (171)
....|+++.|..++ ..+|.+....+-+. .+.|+..|-||+|.|..+... ..-+...+++..++++.+ +..++.++
T Consensus 41 G~~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL-k~~~fsvl 119 (277)
T KOG2984|consen 41 GPNYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEAL-KLEPFSVL 119 (277)
T ss_pred CCceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHh-CCCCeeEe
Confidence 34568888997655 55687777766544 489999999999999766532 223456667777788888 88999999
Q ss_pred EeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 82 GHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 82 G~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
|+|=||..++.+|.+++++|.++|+.++..-..
T Consensus 120 GWSdGgiTalivAak~~e~v~rmiiwga~ayvn 152 (277)
T KOG2984|consen 120 GWSDGGITALIVAAKGKEKVNRMIIWGAAAYVN 152 (277)
T ss_pred eecCCCeEEEEeeccChhhhhhheeecccceec
Confidence 999999999999999999999999998776544
No 119
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=98.81 E-value=1.5e-07 Score=69.40 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=90.9
Q ss_pred CCCeEEEEcCCCCCc-hhHHhh-----HHHHHhCCCeEEEecCCCCCCCCcc--cc-ccccHHHhHHHHHHHHHhcCCCC
Q 030815 6 KQKHFVLVHGSNHGA-WCWYKV-----KPQLEAAGHRVTALDLTASGIDMKK--IQ-DVHSFYEYNEPLLEILASLSADE 76 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~-~~~~~~-----~~~l~~~g~~v~~~d~~g~g~s~~~--~~-~~~~~~~~~~~~~~~i~~~~~~~ 76 (171)
++|++|-.|.++.+. .+++.+ +..+.++ +.++.+|-||+-..... .. ...+++++++++...++++ +-+
T Consensus 45 ~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f-~lk 122 (326)
T KOG2931|consen 45 NKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHF-GLK 122 (326)
T ss_pred CCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCccCCCCCCCCCHHHHHHHHHHHHHhc-Ccc
Confidence 578899999998654 446543 4455566 99999999998654332 22 3569999999999999999 889
Q ss_pred cEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCCCCChhHHHHHHh
Q 030815 77 KVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDTKHQPSYVVERFF 126 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 126 (171)
.++-+|--.|+.|..++|..||++|.|+|++++.... ..-..+..+++.
T Consensus 123 ~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a-~gwiew~~~K~~ 171 (326)
T KOG2931|consen 123 SVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCA-KGWIEWAYNKVS 171 (326)
T ss_pred eEEEecccccHHHHHHHHhcChhheeEEEEEecCCCC-chHHHHHHHHHH
Confidence 9999999999999999999999999999999976532 222234444444
No 120
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.81 E-value=3.5e-08 Score=68.74 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=76.6
Q ss_pred CeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc---CCCCcEEEEEeC
Q 030815 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL---SADEKVVIVGHS 84 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~lvG~S 84 (171)
..+||+-|=++-...=+.+++.|+++|+.|+.+|-.-+=.+ ..+.++.+.|+.++|++. .+.++++|+|+|
T Consensus 3 t~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~------~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYS 76 (192)
T PF06057_consen 3 TLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFWS------ERTPEQTAADLARIIRHYRARWGRKRVVLIGYS 76 (192)
T ss_pred EEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHhh------hCCHHHHHHHHHHHHHHHHHHhCCceEEEEeec
Confidence 46888888887776667899999999999999985432222 235566666666666554 378899999999
Q ss_pred hhHHHHHHHHHhCC----cceeEEEEeccccC
Q 030815 85 LGGLSLALAAEKFP----HKISVAIFLTAFMP 112 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~----~~~~~~v~~~~~~~ 112 (171)
+|+-+.-....++| ++|..++++++...
T Consensus 77 FGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~ 108 (192)
T PF06057_consen 77 FGADVLPFIYNRLPAALRARVAQVVLLSPSTT 108 (192)
T ss_pred CCchhHHHHHhhCCHHHHhheeEEEEeccCCc
Confidence 99999988888886 46999999998653
No 121
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.80 E-value=8.8e-09 Score=80.01 Aligned_cols=108 Identities=24% Similarity=0.226 Sum_probs=84.5
Q ss_pred cCCCeEEEEcCCCCCchhH------HhhHHHHHhCCCeEEEecCCCCCCCCcccc---------ccccHHHh-HHHHHHH
Q 030815 5 KKQKHFVLVHGSNHGAWCW------YKVKPQLEAAGHRVTALDLTASGIDMKKIQ---------DVHSFYEY-NEPLLEI 68 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~------~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~---------~~~~~~~~-~~~~~~~ 68 (171)
+++|+|++.||+-.++..| +.++-.|++.||+|+.-+.||...|.++.. ...++.+. ..|+-+.
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~ 150 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAM 150 (403)
T ss_pred CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcCcccchhhcccCCcCCcceeecchhhhhhcCHHHH
Confidence 5679999999999998887 457888999999999999999877764321 12345553 3466666
Q ss_pred HHhc---CCCCcEEEEEeChhHHHHHHHHHhCC---cceeEEEEeccccC
Q 030815 69 LASL---SADEKVVIVGHSLGGLSLALAAEKFP---HKISVAIFLTAFMP 112 (171)
Q Consensus 69 i~~~---~~~~~~~lvG~S~Gg~~a~~~~~~~~---~~~~~~v~~~~~~~ 112 (171)
|+.+ .+..++..||||.|+.+...++...| ++|+.+++++|...
T Consensus 151 IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~ 200 (403)
T KOG2624|consen 151 IDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAF 200 (403)
T ss_pred HHHHHHhccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhh
Confidence 6655 36789999999999999888888765 47999999999884
No 122
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=98.80 E-value=8.8e-08 Score=70.84 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCCCch-hHHhh-----HHHHHhCCCeEEEecCCCCCCCCcc--cc-ccccHHHhHHHHHHHHHhcCCCC
Q 030815 6 KQKHFVLVHGSNHGAW-CWYKV-----KPQLEAAGHRVTALDLTASGIDMKK--IQ-DVHSFYEYNEPLLEILASLSADE 76 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~-~~~~~-----~~~l~~~g~~v~~~d~~g~g~s~~~--~~-~~~~~~~~~~~~~~~i~~~~~~~ 76 (171)
++|++|-.|-+|-+.. +|+.+ .+.+.++ +.++-+|.||+...... .. ...+++++++++.+.++++ +.+
T Consensus 22 ~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~-f~i~Hi~aPGqe~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f-~lk 99 (283)
T PF03096_consen 22 NKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQN-FCIYHIDAPGQEEGAATLPEGYQYPSMDQLAEMLPEVLDHF-GLK 99 (283)
T ss_dssp TS-EEEEE--TT--HHHHCHHHHCSHHHHHHHTT-SEEEEEE-TTTSTT-----TT-----HHHHHCTHHHHHHHH-T--
T ss_pred CCceEEEeccccccchHHHHHHhcchhHHHHhhc-eEEEEEeCCCCCCCcccccccccccCHHHHHHHHHHHHHhC-Ccc
Confidence 5899999999996644 36543 4555565 99999999999764432 21 2468999999999999999 889
Q ss_pred cEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 77 KVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
.++.+|--.|+.|..++|..+|+++.|+|++++...
T Consensus 100 ~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~ 135 (283)
T PF03096_consen 100 SVIGFGVGAGANILARFALKHPERVLGLILVNPTCT 135 (283)
T ss_dssp -EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S
T ss_pred EEEEEeeccchhhhhhccccCccceeEEEEEecCCC
Confidence 999999999999999999999999999999998764
No 123
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=98.79 E-value=1.2e-07 Score=67.05 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=74.0
Q ss_pred EEcCCC--CCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHH
Q 030815 12 LVHGSN--HGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLS 89 (171)
Q Consensus 12 ~lHG~~--~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~ 89 (171)
++|..+ ++...|..+...+.. .+.++.++.+|++.+.... .+.+..++.+...+.......+++++|||+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~ 77 (212)
T smart00824 2 CFPSTAAPSGPHEYARLAAALRG-RRDVSALPLPGFGPGEPLP---ASADALVEAQAEAVLRAAGGRPFVLVGHSSGGLL 77 (212)
T ss_pred ccCCCCCCCcHHHHHHHHHhcCC-CccEEEecCCCCCCCCCCC---CCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHH
Confidence 455544 667789999999976 4999999999998654433 3567777766666655535678999999999999
Q ss_pred HHHHHHhC---CcceeEEEEeccccCC
Q 030815 90 LALAAEKF---PHKISVAIFLTAFMPD 113 (171)
Q Consensus 90 a~~~~~~~---~~~~~~~v~~~~~~~~ 113 (171)
+..++.++ +..+.+++++++..+.
T Consensus 78 a~~~a~~l~~~~~~~~~l~~~~~~~~~ 104 (212)
T smart00824 78 AHAVAARLEARGIPPAAVVLLDTYPPG 104 (212)
T ss_pred HHHHHHHHHhCCCCCcEEEEEccCCCC
Confidence 99988864 4568899888765543
No 124
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.75 E-value=5e-08 Score=73.98 Aligned_cols=99 Identities=19% Similarity=0.216 Sum_probs=84.8
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhC---------CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCc
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAA---------GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEK 77 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~---------g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 77 (171)
--|++++||+.++-..+..++..|... -+.|++|.+||+|.|..+...-.+..+.+..+..++=.+ +..+
T Consensus 152 v~PlLl~HGwPGsv~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~sk~GFn~~a~ArvmrkLMlRL-g~nk 230 (469)
T KOG2565|consen 152 VKPLLLLHGWPGSVREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPSKTGFNAAATARVMRKLMLRL-GYNK 230 (469)
T ss_pred ccceEEecCCCchHHHHHhhhhhhcCccccCCccceeEEEeccCCCCcccCcCCccCCccHHHHHHHHHHHHHHh-Ccce
Confidence 357999999999999999999998653 267999999999999887755567777788777777777 7899
Q ss_pred EEEEEeChhHHHHHHHHHhCCcceeEEEE
Q 030815 78 VVIVGHSLGGLSLALAAEKFPHKISVAIF 106 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~ 106 (171)
..+=|-.+|..++.+++..+|++|.|.=+
T Consensus 231 ffiqGgDwGSiI~snlasLyPenV~GlHl 259 (469)
T KOG2565|consen 231 FFIQGGDWGSIIGSNLASLYPENVLGLHL 259 (469)
T ss_pred eEeecCchHHHHHHHHHhhcchhhhHhhh
Confidence 99999999999999999999999887643
No 125
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.68 E-value=4.4e-08 Score=72.73 Aligned_cols=111 Identities=19% Similarity=0.261 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCc------cccc--------------------cc--c
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMK------KIQD--------------------VH--S 57 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~------~~~~--------------------~~--~ 57 (171)
+=|++||-||+++++.-|..+.-.|+++||-|.++.+|.+...+. +... .. .
T Consensus 117 k~PvvvFSHGLggsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~irNeq 196 (399)
T KOG3847|consen 117 KYPVVVFSHGLGGSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHIRNEQ 196 (399)
T ss_pred CccEEEEecccccchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEeeCHH
Confidence 448899999999999999999999999999999999987654321 0000 00 0
Q ss_pred HHHhHH---HHHHHHHhcC-----------------------CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 58 FYEYNE---PLLEILASLS-----------------------ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 58 ~~~~~~---~~~~~i~~~~-----------------------~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
+-..++ .....|+.+. +..++.++|||+||..++.....+ ..+++.|++++|+
T Consensus 197 v~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~lD~WM 275 (399)
T KOG3847|consen 197 VGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIALDAWM 275 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeeeeeeee
Confidence 111111 2223333331 233689999999999877776654 4499999999998
Q ss_pred CCCCCC
Q 030815 112 PDTKHQ 117 (171)
Q Consensus 112 ~~~~~~ 117 (171)
.+.+..
T Consensus 276 ~Pl~~~ 281 (399)
T KOG3847|consen 276 FPLDQL 281 (399)
T ss_pred cccchh
Confidence 765443
No 126
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.65 E-value=4.8e-07 Score=70.59 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=81.4
Q ss_pred CeEEEEcCCCCCchh-HHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChh
Q 030815 8 KHFVLVHGSNHGAWC-WYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLG 86 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~-~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~G 86 (171)
|+||++..+.++-.. -+.+++.|.+ |+.|+..||..-+...... ...+++++++-+.++++.+ +.+ ++++|+|+|
T Consensus 103 ~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~-~~f~ldDYi~~l~~~i~~~-G~~-v~l~GvCqg 178 (406)
T TIGR01849 103 PAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNARMVPLSA-GKFDLEDYIDYLIEFIRFL-GPD-IHVIAVCQP 178 (406)
T ss_pred CcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCchhc-CCCCHHHHHHHHHHHHHHh-CCC-CcEEEEchh
Confidence 789999888765444 4678999988 9999999998766443222 2348999999999999988 444 999999999
Q ss_pred HHHHHHHHHhC-----CcceeEEEEeccccCCCC
Q 030815 87 GLSLALAAEKF-----PHKISVAIFLTAFMPDTK 115 (171)
Q Consensus 87 g~~a~~~~~~~-----~~~~~~~v~~~~~~~~~~ 115 (171)
|..++.++..+ |.+++.++++++++....
T Consensus 179 G~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~ 212 (406)
T TIGR01849 179 AVPVLAAVALMAENEPPAQPRSMTLMGGPIDARA 212 (406)
T ss_pred hHHHHHHHHHHHhcCCCCCcceEEEEecCccCCC
Confidence 99877665544 567999999999887554
No 127
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.65 E-value=1.7e-07 Score=71.85 Aligned_cols=104 Identities=17% Similarity=0.096 Sum_probs=58.9
Q ss_pred cCCCeEEEEcCCCCCchh--------------H----HhhHHHHHhCCCeEEEecCCCCCCCCcccc----ccccHHHhH
Q 030815 5 KKQKHFVLVHGSNHGAWC--------------W----YKVKPQLEAAGHRVTALDLTASGIDMKKIQ----DVHSFYEYN 62 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~--------------~----~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~----~~~~~~~~~ 62 (171)
+.-|+||++||-+++... + ......|+++||.|+++|.+|+|....... ..++...++
T Consensus 113 ~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la 192 (390)
T PF12715_consen 113 GPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDALGFGERGDMEGAAQGSNYDCQALA 192 (390)
T ss_dssp S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--TTSGGG-SSCCCTTTTS--HHHHH
T ss_pred CCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccccccccccccccccccchhHHHHH
Confidence 456889999998754321 1 235788999999999999999997643221 111112221
Q ss_pred H---------------HHHHHHHhc-----CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEecc
Q 030815 63 E---------------PLLEILASL-----SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTA 109 (171)
Q Consensus 63 ~---------------~~~~~i~~~-----~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~ 109 (171)
. +....++.+ -+.++|.++|+||||..++.++..- ++|+..|..+-
T Consensus 193 ~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALD-dRIka~v~~~~ 258 (390)
T PF12715_consen 193 RNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALD-DRIKATVANGY 258 (390)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--TT--EEEEES-
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcc-hhhHhHhhhhh
Confidence 1 222333433 1566899999999999988887763 46777665543
No 128
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.65 E-value=2.6e-07 Score=69.65 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=68.1
Q ss_pred cCCCeEEEEcCCCCCchh--H-----HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC----
Q 030815 5 KKQKHFVLVHGSNHGAWC--W-----YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS---- 73 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~--~-----~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~---- 73 (171)
.+...||+.-|.++.-+. . ..+.+...+.|.+|+.++|||.|.|++.. +.++++.+....++.+.
T Consensus 135 ~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~----s~~dLv~~~~a~v~yL~d~~~ 210 (365)
T PF05677_consen 135 KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPP----SRKDLVKDYQACVRYLRDEEQ 210 (365)
T ss_pred CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCC----CHHHHHHHHHHHHHHHHhccc
Confidence 456789999888754332 0 12333333458999999999999998776 34666666665555552
Q ss_pred --CCCcEEEEEeChhHHHHHHHHHhCC----cceeEEEEec
Q 030815 74 --ADEKVVIVGHSLGGLSLALAAEKFP----HKISVAIFLT 108 (171)
Q Consensus 74 --~~~~~~lvG~S~Gg~~a~~~~~~~~----~~~~~~v~~~ 108 (171)
+.+.|++.|||+||.++..++.++. +-++-+++-+
T Consensus 211 G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~ikD 251 (365)
T PF05677_consen 211 GPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLIKD 251 (365)
T ss_pred CCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEEec
Confidence 4478999999999999999887753 2355454443
No 129
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.65 E-value=4.8e-07 Score=68.93 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=66.0
Q ss_pred ccCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCC-CCccc--------c----cccc------HHHhHHH
Q 030815 4 AKKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGI-DMKKI--------Q----DVHS------FYEYNEP 64 (171)
Q Consensus 4 ~~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~-s~~~~--------~----~~~~------~~~~~~~ 64 (171)
.++-|+||.+||.++....|.... .++..|+.++.+|.+|.|. +.... . ...+ ......|
T Consensus 80 ~~~~Pavv~~hGyg~~~~~~~~~~-~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D 158 (320)
T PF05448_consen 80 KGKLPAVVQFHGYGGRSGDPFDLL-PWAAAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLD 158 (320)
T ss_dssp SSSEEEEEEE--TT--GGGHHHHH-HHHHTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHH
T ss_pred CCCcCEEEEecCCCCCCCCccccc-ccccCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHH
Confidence 345688999999998877675544 3567799999999999983 22100 0 0011 1223344
Q ss_pred HHHHHHhc---C--CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 65 LLEILASL---S--ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 65 ~~~~i~~~---~--~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
....++.+ . +.++|.+.|.|+||.+++.++...+ +|++++..-|+..
T Consensus 159 ~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~ 210 (320)
T PF05448_consen 159 AVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLC 210 (320)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSS
T ss_pred HHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCcc
Confidence 44444444 1 4568999999999999999998765 5999998888764
No 130
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=98.61 E-value=4e-07 Score=65.83 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=71.4
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCC-----eEEEecCCCC----CCCCc-------------cccccccHHHhHHH
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGH-----RVTALDLTAS----GIDMK-------------KIQDVHSFYEYNEP 64 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~-----~v~~~d~~g~----g~s~~-------------~~~~~~~~~~~~~~ 64 (171)
.-|.||+||.+++..+...++.+|...+- -+...|--|. |.=++ ........+.|.+.
T Consensus 45 ~iPTIfIhGsgG~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk~ 124 (288)
T COG4814 45 AIPTIFIHGSGGTASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLKK 124 (288)
T ss_pred ccceEEEecCCCChhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHHH
Confidence 34799999999999999999999977631 1334444441 10000 01111234455555
Q ss_pred HHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCCc-----ceeEEEEeccccC
Q 030815 65 LLEILASLSADEKVVIVGHSLGGLSLALAAEKFPH-----KISVAIFLTAFMP 112 (171)
Q Consensus 65 ~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~~-----~~~~~v~~~~~~~ 112 (171)
+.+.++......++.+|||||||.-..+++..+.. .+.++|.++++..
T Consensus 125 ~msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 125 AMSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 55555554688999999999999988888887642 3889999998776
No 131
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.61 E-value=2.8e-07 Score=72.11 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=63.1
Q ss_pred hHHhhHHHHHhCCCeE----E-E-ecCCCCCCCCccccccccHHHhHHHHHHHHHhc--CCCCcEEEEEeChhHHHHHHH
Q 030815 22 CWYKVKPQLEAAGHRV----T-A-LDLTASGIDMKKIQDVHSFYEYNEPLLEILASL--SADEKVVIVGHSLGGLSLALA 93 (171)
Q Consensus 22 ~~~~~~~~l~~~g~~v----~-~-~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~lvG~S~Gg~~a~~~ 93 (171)
.|..+++.|.+.||.. + + +|||- +. ...++....+...|+.. ...++++||||||||.++..+
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~---~~------~~~~~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~f 136 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRL---SP------AERDEYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYF 136 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhh---ch------hhHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHH
Confidence 5889999999888763 2 2 46661 11 12345555555555554 237899999999999999999
Q ss_pred HHhCCc------ceeEEEEeccccCCCCCCh
Q 030815 94 AEKFPH------KISVAIFLTAFMPDTKHQP 118 (171)
Q Consensus 94 ~~~~~~------~~~~~v~~~~~~~~~~~~~ 118 (171)
+...+. .|+++|.++++..+.....
T Consensus 137 l~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~ 167 (389)
T PF02450_consen 137 LQWMPQEEWKDKYIKRFISIGTPFGGSPKAL 167 (389)
T ss_pred HHhccchhhHHhhhhEEEEeCCCCCCChHHH
Confidence 988742 5999999999887665553
No 132
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.60 E-value=7.6e-07 Score=65.82 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCCCCchhHHhhH--HHHHh-CCCeEEEec-CC------CCCCCCccccccccHHHhHHHHHHHHHhc---
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVK--PQLEA-AGHRVTALD-LT------ASGIDMKKIQDVHSFYEYNEPLLEILASL--- 72 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~--~~l~~-~g~~v~~~d-~~------g~g~s~~~~~~~~~~~~~~~~~~~~i~~~--- 72 (171)
..|.||.|||.+++...+.... +.+++ .|+-|.-|| ++ +.+.+..+... ..-.+.+..+.+++..+
T Consensus 60 ~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~~p~~~-~~g~ddVgflr~lva~l~~~ 138 (312)
T COG3509 60 GAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWFGPADR-RRGVDDVGFLRALVAKLVNE 138 (312)
T ss_pred CCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCccccccCCCcccccCCcccc-cCCccHHHHHHHHHHHHHHh
Confidence 4578999999998876554433 44443 489888884 11 12222112210 11222333333333333
Q ss_pred --CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEecccc-CCCCCChhHHHHHH
Q 030815 73 --SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFM-PDTKHQPSYVVERF 125 (171)
Q Consensus 73 --~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~ 125 (171)
-+..+|.+.|.|-||.|+..++..+|+.+.++..+++.. ......+...+..+
T Consensus 139 ~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~~~~rp~~~m 194 (312)
T COG3509 139 YGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVACTPPRPVSVM 194 (312)
T ss_pred cCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcccCCCCchhHH
Confidence 356689999999999999999999999999999998877 33333333344444
No 133
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=2.9e-06 Score=61.37 Aligned_cols=107 Identities=14% Similarity=0.194 Sum_probs=84.2
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhC-C--CeEEEecCCCCCCCCc--------cccccccHHHhHHHHHHHHHhc-
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAA-G--HRVTALDLTASGIDMK--------KIQDVHSFYEYNEPLLEILASL- 72 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~-g--~~v~~~d~~g~g~s~~--------~~~~~~~~~~~~~~~~~~i~~~- 72 (171)
..++.++++.|..|....|..++..|... + ..++.+...||..-+. ......+++++++.-.++++..
T Consensus 27 ~~~~li~~IpGNPG~~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik~~~ 106 (301)
T KOG3975|consen 27 EDKPLIVWIPGNPGLLGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIKEYV 106 (301)
T ss_pred CCceEEEEecCCCCchhHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHHHhC
Confidence 35678999999999999999988888654 2 4588888777765431 1224568999999999999876
Q ss_pred CCCCcEEEEEeChhHHHHHHHHHhC--CcceeEEEEecccc
Q 030815 73 SADEKVVIVGHSLGGLSLALAAEKF--PHKISVAIFLTAFM 111 (171)
Q Consensus 73 ~~~~~~~lvG~S~Gg~~a~~~~~~~--~~~~~~~v~~~~~~ 111 (171)
..+.+++++|||-|+++.+.++... .-.+.+++++-|..
T Consensus 107 Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTI 147 (301)
T KOG3975|consen 107 PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTI 147 (301)
T ss_pred CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchH
Confidence 6788999999999999999998743 23588888888766
No 134
>PRK04940 hypothetical protein; Provisional
Probab=98.55 E-value=6.8e-07 Score=62.09 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=52.9
Q ss_pred EEEEcCCCCCchh--HHhhHHHHH--hCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc-C--CCCcEEEEE
Q 030815 10 FVLVHGSNHGAWC--WYKVKPQLE--AAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL-S--ADEKVVIVG 82 (171)
Q Consensus 10 vv~lHG~~~~~~~--~~~~~~~l~--~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~-~--~~~~~~lvG 82 (171)
||++||+..++.+ .+. +.++ .-+.+++ +++ ..+..+..+.+.+.+..+ . ..+++.|||
T Consensus 2 IlYlHGF~SS~~S~~~Ka--~~l~~~~p~~~~~--~l~-----------~~~P~~a~~~l~~~i~~~~~~~~~~~~~liG 66 (180)
T PRK04940 2 IIYLHGFDSTSPGNHEKV--LQLQFIDPDVRLI--SYS-----------TLHPKHDMQHLLKEVDKMLQLSDDERPLICG 66 (180)
T ss_pred EEEeCCCCCCCCccHHHH--HhheeeCCCCeEE--ECC-----------CCCHHHHHHHHHHHHHHhhhccCCCCcEEEE
Confidence 8999999988877 422 2221 1123332 221 012233334444444432 1 125799999
Q ss_pred eChhHHHHHHHHHhCCcceeEEEEeccccCC
Q 030815 83 HSLGGLSLALAAEKFPHKISVAIFLTAFMPD 113 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~ 113 (171)
.|+||+.|..++.++. + ..|++.|...+
T Consensus 67 SSLGGyyA~~La~~~g--~-~aVLiNPAv~P 94 (180)
T PRK04940 67 VGLGGYWAERIGFLCG--I-RQVIFNPNLFP 94 (180)
T ss_pred eChHHHHHHHHHHHHC--C-CEEEECCCCCh
Confidence 9999999999999977 3 56689988865
No 135
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.50 E-value=1.4e-06 Score=67.03 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCCCC----chh---HHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcE
Q 030815 6 KQKHFVLVHGSNHG----AWC---WYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKV 78 (171)
Q Consensus 6 ~~~~vv~lHG~~~~----~~~---~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 78 (171)
..|+||++||+|-- ..+ ...+...+. ...+++.||.-.........-...+.+.++.+..+++.. +.+.|
T Consensus 121 ~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~~~~~~yPtQL~qlv~~Y~~Lv~~~-G~~nI 197 (374)
T PF10340_consen 121 SDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSDEHGHKYPTQLRQLVATYDYLVESE-GNKNI 197 (374)
T ss_pred CCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccCCCcCchHHHHHHHHHHHHHhcc-CCCeE
Confidence 46999999999832 222 233444444 368888888643300011112236777778888888666 67899
Q ss_pred EEEEeChhHHHHHHHHHhCC-----cceeEEEEeccccCCC
Q 030815 79 VIVGHSLGGLSLALAAEKFP-----HKISVAIFLTAFMPDT 114 (171)
Q Consensus 79 ~lvG~S~Gg~~a~~~~~~~~-----~~~~~~v~~~~~~~~~ 114 (171)
+|+|-|.||.+++.+++... ...+++|+++||....
T Consensus 198 ~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 198 ILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred EEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 99999999999999877542 2378999999999765
No 136
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.49 E-value=8e-07 Score=67.72 Aligned_cols=91 Identities=25% Similarity=0.247 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCC--CCCCccccc------------cccHHHhHHHHHHH---
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTAS--GIDMKKIQD------------VHSFYEYNEPLLEI--- 68 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~--g~s~~~~~~------------~~~~~~~~~~~~~~--- 68 (171)
.-|.|++-||.|.....+.-+++.+++.||-|..++++|. |........ ...+....+.+.+.
T Consensus 70 ~~PlvvlshG~Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~s 149 (365)
T COG4188 70 LLPLVVLSHGSGSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTAS 149 (365)
T ss_pred cCCeEEecCCCCCCccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcC
Confidence 5688999999999999999999999999999999999983 322211100 11222222222222
Q ss_pred --HHhcCCCCcEEEEEeChhHHHHHHHHHh
Q 030815 69 --LASLSADEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 69 --i~~~~~~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
+..-.+..+|.++|||+||+.++..+.-
T Consensus 150 P~l~~~ld~~~Vgv~GhS~GG~T~m~laGA 179 (365)
T COG4188 150 PALAGRLDPQRVGVLGHSFGGYTAMELAGA 179 (365)
T ss_pred cccccccCccceEEEecccccHHHHHhccc
Confidence 1000256689999999999999988653
No 137
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.49 E-value=2.6e-06 Score=67.04 Aligned_cols=106 Identities=14% Similarity=0.243 Sum_probs=65.7
Q ss_pred CCCeEEEEcCCCC-CchhHHhhHHHHHhCCC----eEEEecCCCC-CCCCccccccccHHHhHHHHHHHHHhc----CCC
Q 030815 6 KQKHFVLVHGSNH-GAWCWYKVKPQLEAAGH----RVTALDLTAS-GIDMKKIQDVHSFYEYNEPLLEILASL----SAD 75 (171)
Q Consensus 6 ~~~~vv~lHG~~~-~~~~~~~~~~~l~~~g~----~v~~~d~~g~-g~s~~~~~~~~~~~~~~~~~~~~i~~~----~~~ 75 (171)
+-|+|+++||..- .......+.+.+.+.|. -++.+|-... .++........-...+.+++.-.|+.. .+.
T Consensus 208 ~~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP~I~~~y~~~~d~ 287 (411)
T PRK10439 208 ERPLAILLDGQFWAESMPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQELPCNADFWLAVQQELLPQVRAIAPFSDDA 287 (411)
T ss_pred CCCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCceEEEEECCCCcccccccCCchHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 4588888999541 11112344556655553 2456664221 111111111111233356666666654 245
Q ss_pred CcEEEEEeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 76 EKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 76 ~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
.+.+|+|+||||..+++++.++|+++.+++.+++.+
T Consensus 288 ~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 288 DRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred cceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 678999999999999999999999999999999875
No 138
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.49 E-value=9.6e-07 Score=66.67 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc-CCCCcEEEEEeC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL-SADEKVVIVGHS 84 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~lvG~S 84 (171)
.+..|||.-|..+-=+. .+...=.+.||.|+..++||++.|++.+....+....-..+.-.|+.+ ...+.|++.|+|
T Consensus 242 gq~LvIC~EGNAGFYEv--G~m~tP~~lgYsvLGwNhPGFagSTG~P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWS 319 (517)
T KOG1553|consen 242 GQDLVICFEGNAGFYEV--GVMNTPAQLGYSVLGWNHPGFAGSTGLPYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWS 319 (517)
T ss_pred CceEEEEecCCccceEe--eeecChHHhCceeeccCCCCccccCCCCCcccchHHHHHHHHHHHHHcCCCccceEEEEee
Confidence 45678888876542110 112222345899999999999999887644333333333334455555 356789999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
.||..+..+|..+|+ |+++|+-+.+.
T Consensus 320 IGGF~~~waAs~YPd-VkavvLDAtFD 345 (517)
T KOG1553|consen 320 IGGFPVAWAASNYPD-VKAVVLDATFD 345 (517)
T ss_pred cCCchHHHHhhcCCC-ceEEEeecchh
Confidence 999999999999998 88888777655
No 139
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.48 E-value=6.2e-07 Score=64.13 Aligned_cols=87 Identities=21% Similarity=0.365 Sum_probs=63.6
Q ss_pred EEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCcccc--ccccHHHhH-HHHHHHHHhc---CCCCcEEEEEe
Q 030815 10 FVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQ--DVHSFYEYN-EPLLEILASL---SADEKVVIVGH 83 (171)
Q Consensus 10 vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~--~~~~~~~~~-~~~~~~i~~~---~~~~~~~lvG~ 83 (171)
++.-.+.+...-.++.+++...+.||.|+++|+||.|.|..... ......|++ .|+...++.+ ....+...|||
T Consensus 33 ~~va~a~Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~~~~P~y~vgH 112 (281)
T COG4757 33 LVVAGATGVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKALPGHPLYFVGH 112 (281)
T ss_pred EEecccCCcchhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhhhhcchHHHHHHHHhhCCCCceEEeec
Confidence 45555566777788999999999999999999999999875432 234566664 3555555554 26778999999
Q ss_pred ChhHHHHHHHHHh
Q 030815 84 SLGGLSLALAAEK 96 (171)
Q Consensus 84 S~Gg~~a~~~~~~ 96 (171)
|+||...-.+...
T Consensus 113 S~GGqa~gL~~~~ 125 (281)
T COG4757 113 SFGGQALGLLGQH 125 (281)
T ss_pred cccceeecccccC
Confidence 9999965555443
No 140
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.48 E-value=3.7e-07 Score=64.17 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=67.0
Q ss_pred cCCCeEEEEcCCC---CCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEE
Q 030815 5 KKQKHFVLVHGSN---HGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIV 81 (171)
Q Consensus 5 ~~~~~vv~lHG~~---~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lv 81 (171)
+..+..||+||.. ++...--.++......||+|.+.++- .+.....-..++.+...-+.-+++.....+++.+-
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~---l~~q~htL~qt~~~~~~gv~filk~~~n~k~l~~g 141 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYN---LCPQVHTLEQTMTQFTHGVNFILKYTENTKVLTFG 141 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccC---cCcccccHHHHHHHHHHHHHHHHHhcccceeEEEc
Confidence 4568899999975 33333334555666779999998654 33322101113333344444444555455668888
Q ss_pred EeChhHHHHHHHHHhC-CcceeEEEEecccc
Q 030815 82 GHSLGGLSLALAAEKF-PHKISVAIFLTAFM 111 (171)
Q Consensus 82 G~S~Gg~~a~~~~~~~-~~~~~~~v~~~~~~ 111 (171)
|||.|+.+++.+..+. ..+|.|++++++..
T Consensus 142 GHSaGAHLa~qav~R~r~prI~gl~l~~GvY 172 (270)
T KOG4627|consen 142 GHSAGAHLAAQAVMRQRSPRIWGLILLCGVY 172 (270)
T ss_pred ccchHHHHHHHHHHHhcCchHHHHHHHhhHh
Confidence 8999999999987664 56799998888764
No 141
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.46 E-value=5.6e-07 Score=66.00 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCC--CCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 61 YNEPLLEILASLSA--DEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 61 ~~~~~~~~i~~~~~--~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
..+++...|+.... ..+..|+|+||||..|+.++.++|+.+.++++++|...
T Consensus 98 l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~ 151 (251)
T PF00756_consen 98 LTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALD 151 (251)
T ss_dssp HHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESE
T ss_pred hhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccc
Confidence 34566666666511 11289999999999999999999999999999997743
No 142
>COG4099 Predicted peptidase [General function prediction only]
Probab=98.45 E-value=8.6e-07 Score=65.64 Aligned_cols=102 Identities=22% Similarity=0.168 Sum_probs=62.4
Q ss_pred CeEEEEcCCCCCchh-HHhh-------HHHHHhCCCeEEEecCCC-CCCCCccccccccHHHhHHHHHHHHHhc--CCCC
Q 030815 8 KHFVLVHGSNHGAWC-WYKV-------KPQLEAAGHRVTALDLTA-SGIDMKKIQDVHSFYEYNEPLLEILASL--SADE 76 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~-~~~~-------~~~l~~~g~~v~~~d~~g-~g~s~~~~~~~~~~~~~~~~~~~~i~~~--~~~~ 76 (171)
|.|||+||.|..... ...+ +....+.++-|++|+|-- +..+...+ . .-.....+-+.+.+... -+..
T Consensus 192 PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~if~d~e~~t-~-~~l~~~idli~~vlas~ynID~s 269 (387)
T COG4099 192 PLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFADSEEKT-L-LYLIEKIDLILEVLASTYNIDRS 269 (387)
T ss_pred cEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEccccccccccccccc-c-hhHHHHHHHHHHHHhhccCcccc
Confidence 889999999865543 2222 222223344566666421 22222211 1 11222233333222222 2677
Q ss_pred cEEEEEeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 77 KVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
+|.++|.|+||+.++.++.++|+.+++.+.+++..
T Consensus 270 RIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~ 304 (387)
T COG4099 270 RIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGG 304 (387)
T ss_pred eEEEEeecCcchhhHHHHHhCchhhheeeeecCCC
Confidence 89999999999999999999999999999999764
No 143
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.44 E-value=1.1e-06 Score=61.78 Aligned_cols=106 Identities=15% Similarity=0.266 Sum_probs=75.4
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCC---------CCcc--------ccccccHHHhHHHHHHHH
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGI---------DMKK--------IQDVHSFYEYNEPLLEIL 69 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~---------s~~~--------~~~~~~~~~~~~~~~~~i 69 (171)
+..||++||.+++...|..+.+.+.-.....++|.-|-.-. ++-+ ..+...+...++.+..++
T Consensus 3 ~atIi~LHglGDsg~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~Li 82 (206)
T KOG2112|consen 3 TATIIFLHGLGDSGSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANLI 82 (206)
T ss_pred eEEEEEEecCCCCCccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHHH
Confidence 35799999999999999888888766677788774332111 1100 012223444455566666
Q ss_pred Hhc----CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 70 ASL----SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 70 ~~~----~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
+.. ....+|.+-|.|+||.++++.+..++..+.+++..++..+
T Consensus 83 ~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p 129 (206)
T KOG2112|consen 83 DNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLP 129 (206)
T ss_pred HHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccc
Confidence 555 2455799999999999999999999988999998888776
No 144
>PLN02606 palmitoyl-protein thioesterase
Probab=98.43 E-value=6.6e-06 Score=61.50 Aligned_cols=105 Identities=17% Similarity=0.093 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCC--CCchhHHhhHHHHHhC-CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC-CCCcEEEE
Q 030815 6 KQKHFVLVHGSN--HGAWCWYKVKPQLEAA-GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS-ADEKVVIV 81 (171)
Q Consensus 6 ~~~~vv~lHG~~--~~~~~~~~~~~~l~~~-g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~lv 81 (171)
...|||+.||+| .+...+..+.+.+... |+-+..+.. |-+. .......+.++++.+.+.+.... -..-++++
T Consensus 25 ~~~PvViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~i-g~~~---~~s~~~~~~~Qv~~vce~l~~~~~L~~G~naI 100 (306)
T PLN02606 25 LSVPFVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVEI-GNGV---QDSLFMPLRQQASIACEKIKQMKELSEGYNIV 100 (306)
T ss_pred CCCCEEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEEE-CCCc---ccccccCHHHHHHHHHHHHhcchhhcCceEEE
Confidence 457899999999 4555788888888533 665555442 2221 01111345566666665555531 12459999
Q ss_pred EeChhHHHHHHHHHhCCc--ceeEEEEeccccCCC
Q 030815 82 GHSLGGLSLALAAEKFPH--KISVAIFLTAFMPDT 114 (171)
Q Consensus 82 G~S~Gg~~a~~~~~~~~~--~~~~~v~~~~~~~~~ 114 (171)
|+|.||.++..++++.++ .|+-+|.++++-.+.
T Consensus 101 GfSQGglflRa~ierc~~~p~V~nlISlggph~Gv 135 (306)
T PLN02606 101 AESQGNLVARGLIEFCDNAPPVINYVSLGGPHAGV 135 (306)
T ss_pred EEcchhHHHHHHHHHCCCCCCcceEEEecCCcCCc
Confidence 999999999999999976 599999999876544
No 145
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=2.8e-06 Score=70.04 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHh----------------CCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHH
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEA----------------AGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEIL 69 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~----------------~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i 69 (171)
.+.||+|++|..|+-.+-+.++..... ..++.++.|+-+- -..-+-..+.++++-+.+.|
T Consensus 88 sGIPVLFIPGNAGSyKQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnEe----~tAm~G~~l~dQtEYV~dAI 163 (973)
T KOG3724|consen 88 SGIPVLFIPGNAGSYKQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNEE----FTAMHGHILLDQTEYVNDAI 163 (973)
T ss_pred CCceEEEecCCCCchHHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccch----hhhhccHhHHHHHHHHHHHH
Confidence 567999999999988777666555431 1245556665420 00001124555555555544
Q ss_pred Hhc----C--------CCCcEEEEEeChhHHHHHHHHHh---CCcceeEEEEeccccCCCCCChhH
Q 030815 70 ASL----S--------ADEKVVIVGHSLGGLSLALAAEK---FPHKISVAIFLTAFMPDTKHQPSY 120 (171)
Q Consensus 70 ~~~----~--------~~~~~~lvG~S~Gg~~a~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~ 120 (171)
+.+ . ..+.|++|||||||.+|...+-. .+..|.-++.++.+-.....+.+.
T Consensus 164 k~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH~a~Pl~~D~ 229 (973)
T KOG3724|consen 164 KYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPHAAPPLPLDR 229 (973)
T ss_pred HHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcccCCCCCCcH
Confidence 443 1 14459999999999999887653 245677888888766555444443
No 146
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.42 E-value=3.9e-06 Score=60.66 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCC-CCCCccccccccHHHhHHHHHHHHHhc--CCCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTAS-GIDMKKIQDVHSFYEYNEPLLEILASL--SADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~-g~s~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~lvG 82 (171)
..++||+..|++...+.+..++++|...|+.|+.+|.--| |.|++... .+++....+++...++.+ .+..++-|+.
T Consensus 29 ~~~tiliA~Gf~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~-eftms~g~~sL~~V~dwl~~~g~~~~GLIA 107 (294)
T PF02273_consen 29 RNNTILIAPGFARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDIN-EFTMSIGKASLLTVIDWLATRGIRRIGLIA 107 (294)
T ss_dssp -S-EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B--------------HHHHHHHHHHHHHHHHHTT---EEEEE
T ss_pred cCCeEEEecchhHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCChh-hcchHHhHHHHHHHHHHHHhcCCCcchhhh
Confidence 4588999999999999999999999999999999998766 88877753 357777777777777666 4777899999
Q ss_pred eChhHHHHHHHHHhCCcceeEEEEec
Q 030815 83 HSLGGLSLALAAEKFPHKISVAIFLT 108 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~~~~~~~v~~~ 108 (171)
-|+.|.+|...+.+- .+.-+|..-
T Consensus 108 aSLSaRIAy~Va~~i--~lsfLitaV 131 (294)
T PF02273_consen 108 ASLSARIAYEVAADI--NLSFLITAV 131 (294)
T ss_dssp ETTHHHHHHHHTTTS----SEEEEES
T ss_pred hhhhHHHHHHHhhcc--CcceEEEEe
Confidence 999999999999863 355555443
No 147
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.39 E-value=1e-06 Score=69.33 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=78.3
Q ss_pred cCCCeEEEEcCCC---CCchhHHhhHHHHHhCC-CeEEEecCCC--CC---CCCcc---c-cccccHHHh---HHHHHHH
Q 030815 5 KKQKHFVLVHGSN---HGAWCWYKVKPQLEAAG-HRVTALDLTA--SG---IDMKK---I-QDVHSFYEY---NEPLLEI 68 (171)
Q Consensus 5 ~~~~~vv~lHG~~---~~~~~~~~~~~~l~~~g-~~v~~~d~~g--~g---~s~~~---~-~~~~~~~~~---~~~~~~~ 68 (171)
.+.|++|+|||.+ ++...-..--..|++.| .-+++++||= .| .+... . .+...+.|+ .+++.+-
T Consensus 92 ~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~N 171 (491)
T COG2272 92 EKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLLDQILALKWVRDN 171 (491)
T ss_pred CCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccccccccccHHHHHHHHHHHHHH
Confidence 4569999999986 44443223346777777 7888888772 11 11111 0 011233333 4666777
Q ss_pred HHhc-CCCCcEEEEEeChhHHHHHHHHHhC--CcceeEEEEeccccCCCCC--ChhHHHHHHhhcCCCC
Q 030815 69 LASL-SADEKVVIVGHSLGGLSLALAAEKF--PHKISVAIFLTAFMPDTKH--QPSYVVERFFERIPSG 132 (171)
Q Consensus 69 i~~~-~~~~~~~lvG~S~Gg~~a~~~~~~~--~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 132 (171)
|+.. .+.++|.|.|+|-|++.++.++..- ...++++|+.|+....... ........+.+.++..
T Consensus 172 Ie~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~~~~s~~~A~~~a~~f~~~lG~~ 240 (491)
T COG2272 172 IEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAASRVTSREEAREKAAAFARALGIP 240 (491)
T ss_pred HHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCCccCcHHHHHHHHHHHHHHhCCC
Confidence 7777 5677899999999999877776542 2458888999988752222 2233444555544433
No 148
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=98.39 E-value=3.8e-06 Score=66.70 Aligned_cols=107 Identities=19% Similarity=0.144 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCCCchh-H--HhhHHHHHhC-CCeEEEecCCCCCCCCccc------cccccHHHhHHHHHHHHHhc----
Q 030815 7 QKHFVLVHGSNHGAWC-W--YKVKPQLEAA-GHRVTALDLTASGIDMKKI------QDVHSFYEYNEPLLEILASL---- 72 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~-~--~~~~~~l~~~-g~~v~~~d~~g~g~s~~~~------~~~~~~~~~~~~~~~~i~~~---- 72 (171)
+|++|++ |.-+.... + ..+...|+++ |--++.+.+|.+|.|..-. -...+.++-.+|+..+++.+
T Consensus 29 gpifl~~-ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~ 107 (434)
T PF05577_consen 29 GPIFLYI-GGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKY 107 (434)
T ss_dssp SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 5555555 44444332 1 2244445443 7789999999999986421 13357888899999888876
Q ss_pred --CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 73 --SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 73 --~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
....|++++|-|+||.++..+-.++|+.+.+.+.-+++....
T Consensus 108 ~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~a~ 151 (434)
T PF05577_consen 108 NTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQAK 151 (434)
T ss_dssp TTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CCHC
T ss_pred cCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceeeee
Confidence 245689999999999999999999999999999998887543
No 149
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.37 E-value=2.6e-06 Score=68.59 Aligned_cols=106 Identities=15% Similarity=0.065 Sum_probs=66.4
Q ss_pred cCCCeEEEEcCCC---CCchhHHhhHHHHHhC-C-CeEEEecCC-C---CCCCCcc----ccccccHHHhHHHHHHHHHh
Q 030815 5 KKQKHFVLVHGSN---HGAWCWYKVKPQLEAA-G-HRVTALDLT-A---SGIDMKK----IQDVHSFYEYNEPLLEILAS 71 (171)
Q Consensus 5 ~~~~~vv~lHG~~---~~~~~~~~~~~~l~~~-g-~~v~~~d~~-g---~g~s~~~----~~~~~~~~~~~~~~~~~i~~ 71 (171)
++.|++|++||.+ ++...+ ....+... + +.|+.+++| | +...... +....+.....+.+.+-|+.
T Consensus 93 ~~~pv~v~ihGG~~~~g~~~~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~ 170 (493)
T cd00312 93 NSLPVMVWIHGGGFMFGSGSLY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAA 170 (493)
T ss_pred CCCCEEEEEcCCccccCCCCCC--ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 4569999999976 333222 23444433 3 899999998 3 2222111 11112333344555555655
Q ss_pred c-CCCCcEEEEEeChhHHHHHHHHHhC--CcceeEEEEeccccC
Q 030815 72 L-SADEKVVIVGHSLGGLSLALAAEKF--PHKISVAIFLTAFMP 112 (171)
Q Consensus 72 ~-~~~~~~~lvG~S~Gg~~a~~~~~~~--~~~~~~~v~~~~~~~ 112 (171)
. .+..+|.|+|+|.||..+..++... +..++++|++++...
T Consensus 171 fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 171 FGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred hCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 5 4667899999999999888877653 346889998887654
No 150
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.34 E-value=4.4e-06 Score=70.52 Aligned_cols=84 Identities=15% Similarity=0.071 Sum_probs=65.0
Q ss_pred hhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC-------------------CCCcEEEEEeCh
Q 030815 25 KVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS-------------------ADEKVVIVGHSL 85 (171)
Q Consensus 25 ~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~-------------------~~~~~~lvG~S~ 85 (171)
.+.+.+.++||.|+..|.||.|.|.+.... -..+..+|..+.|+.+. ...+|.++|.|+
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~--~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY 347 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCPTT--GDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSY 347 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcCcc--CCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcH
Confidence 456788899999999999999999876432 11334455555555552 157999999999
Q ss_pred hHHHHHHHHHhCCcceeEEEEeccc
Q 030815 86 GGLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 86 Gg~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
||.+++.+|...+..++++|..++.
T Consensus 348 ~G~~~~~aAa~~pp~LkAIVp~a~i 372 (767)
T PRK05371 348 LGTLPNAVATTGVEGLETIIPEAAI 372 (767)
T ss_pred HHHHHHHHHhhCCCcceEEEeeCCC
Confidence 9999999999888889999987765
No 151
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.32 E-value=1.2e-05 Score=61.24 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=75.1
Q ss_pred cCCCeEEEEcCCCCCchhH-Hhh-HHHHHhCCCeEEEecCCCCCCCCccccc---cccHHHhH----------HHHHHHH
Q 030815 5 KKQKHFVLVHGSNHGAWCW-YKV-KPQLEAAGHRVTALDLTASGIDMKKIQD---VHSFYEYN----------EPLLEIL 69 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~-~~~-~~~l~~~g~~v~~~d~~g~g~s~~~~~~---~~~~~~~~----------~~~~~~i 69 (171)
+.+|++|.+.|.|++.-.. ..+ +..|.+.|+..+.+..|.||.-...... ..++.|+. ..+..-+
T Consensus 90 ~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl 169 (348)
T PF09752_consen 90 PYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWL 169 (348)
T ss_pred CCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHH
Confidence 4578899999988765322 234 7777777999999999999876543321 22333322 2223333
Q ss_pred HhcCCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 70 ASLSADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 70 ~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
+.. +..++.+.|.||||.+|..++...|..+..+-++++...
T Consensus 170 ~~~-G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sA 211 (348)
T PF09752_consen 170 ERE-GYGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSA 211 (348)
T ss_pred Hhc-CCCceEEEEechhHhhHHhhhhcCCCceeEEEeecccCC
Confidence 333 678999999999999999999999988877777776543
No 152
>COG3150 Predicted esterase [General function prediction only]
Probab=98.32 E-value=4.9e-06 Score=56.67 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=62.9
Q ss_pred EEEEcCCCCCchhHHh--hHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhH
Q 030815 10 FVLVHGSNHGAWCWYK--VKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGG 87 (171)
Q Consensus 10 vv~lHG~~~~~~~~~~--~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg 87 (171)
||++||+..+..+.+. +.+.+.+ |.|-.+.+.....+ ..++.++.+.+++... ......|||-|+||
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~--------~~~~i~y~~p~l~h--~p~~a~~ele~~i~~~-~~~~p~ivGssLGG 70 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDE--------DVRDIEYSTPHLPH--DPQQALKELEKAVQEL-GDESPLIVGSSLGG 70 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhc--------cccceeeecCCCCC--CHHHHHHHHHHHHHHc-CCCCceEEeecchH
Confidence 8999999998877654 2233333 23333334333323 6888899999999999 56668999999999
Q ss_pred HHHHHHHHhCCcceeEEEEeccccC
Q 030815 88 LSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 88 ~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
+.+..++.++. ++.+ ++.|...
T Consensus 71 Y~At~l~~~~G--irav-~~NPav~ 92 (191)
T COG3150 71 YYATWLGFLCG--IRAV-VFNPAVR 92 (191)
T ss_pred HHHHHHHHHhC--Chhh-hcCCCcC
Confidence 99999999976 4444 4565553
No 153
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=98.28 E-value=3.4e-06 Score=62.44 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=59.6
Q ss_pred cCCCeEEEEcCCCCCc---hhHHhhHHHHHhC--CCeEEEecCCCCCCCC-ccccccccHHHhHHHHHHHHHhcC-CCCc
Q 030815 5 KKQKHFVLVHGSNHGA---WCWYKVKPQLEAA--GHRVTALDLTASGIDM-KKIQDVHSFYEYNEPLLEILASLS-ADEK 77 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~---~~~~~~~~~l~~~--g~~v~~~d~~g~g~s~-~~~~~~~~~~~~~~~~~~~i~~~~-~~~~ 77 (171)
+...|||+.||+|++. ..+..+.+.+.+. |.-|.+++.- .+.+. ........+.+.++.+.+.++... -..-
T Consensus 3 ~~~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig-~~~~~D~~~s~f~~v~~Qv~~vc~~l~~~p~L~~G 81 (279)
T PF02089_consen 3 PSPLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIG-NDPSEDVENSFFGNVNDQVEQVCEQLANDPELANG 81 (279)
T ss_dssp TSS--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SS-SSHHHHHHHHHHSHHHHHHHHHHHHHHH-GGGTT-
T ss_pred CCCCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEEC-CCcchhhhhhHHHHHHHHHHHHHHHHhhChhhhcc
Confidence 3457899999999754 3466665555443 6667777652 22111 011111245666666666666541 1256
Q ss_pred EEEEEeChhHHHHHHHHHhCCc-ceeEEEEeccccCCC
Q 030815 78 VVIVGHSLGGLSLALAAEKFPH-KISVAIFLTAFMPDT 114 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~~~~-~~~~~v~~~~~~~~~ 114 (171)
++++|+|.||.++..++++.++ .|+-+|.++++..+-
T Consensus 82 ~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph~Gv 119 (279)
T PF02089_consen 82 FNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPHMGV 119 (279)
T ss_dssp EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES--TT-B
T ss_pred eeeeeeccccHHHHHHHHHCCCCCceeEEEecCccccc
Confidence 9999999999999999999864 699999999876433
No 154
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.28 E-value=5.6e-06 Score=59.51 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=54.3
Q ss_pred cCCCeEEEEcCCCCCchhHHh----hHHHHHhCCCeEEEecCCC-----CCCC------------------Ccccc----
Q 030815 5 KKQKHFVLVHGSNHGAWCWYK----VKPQLEAAGHRVTALDLTA-----SGID------------------MKKIQ---- 53 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~----~~~~l~~~g~~v~~~d~~g-----~g~s------------------~~~~~---- 53 (171)
++++-||+|||++.+...++. +.+.|.+.++.++.+|=|- -+.. +....
T Consensus 2 ~~k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 81 (212)
T PF03959_consen 2 TRKPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDH 81 (212)
T ss_dssp ----EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SG
T ss_pred CCCceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCcc
Confidence 467889999999999987754 5555555358877765331 1111 11110
Q ss_pred ccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC--------CcceeEEEEeccccCC
Q 030815 54 DVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKF--------PHKISVAIFLTAFMPD 113 (171)
Q Consensus 54 ~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~--------~~~~~~~v~~~~~~~~ 113 (171)
....+++..+.+.+.++.. ..-..|+|+|.||.+|..++... ...++-+|+++++.+.
T Consensus 82 ~~~~~~~sl~~l~~~i~~~--GPfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~ 147 (212)
T PF03959_consen 82 EYEGLDESLDYLRDYIEEN--GPFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPP 147 (212)
T ss_dssp GG---HHHHHHHHHHHHHH-----SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----E
T ss_pred cccCHHHHHHHHHHHHHhc--CCeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCC
Confidence 1234556666677777665 22467999999999999887542 1247889999988764
No 155
>PLN02633 palmitoyl protein thioesterase family protein
Probab=98.26 E-value=2.7e-05 Score=58.37 Aligned_cols=105 Identities=16% Similarity=0.093 Sum_probs=71.2
Q ss_pred cCCCeEEEEcCCCCCch--hHHhhHHHHHhC-CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC-CCCcEEE
Q 030815 5 KKQKHFVLVHGSNHGAW--CWYKVKPQLEAA-GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS-ADEKVVI 80 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~--~~~~~~~~l~~~-g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~l 80 (171)
+...|+|+.||+|++.. ....+.+.+... |.-+.++.. | .+.... ....+.++++.+.+.+.... -..-+++
T Consensus 23 ~~~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i-g--~~~~~s-~~~~~~~Qve~vce~l~~~~~l~~G~na 98 (314)
T PLN02633 23 SVSVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI-G--NGVGDS-WLMPLTQQAEIACEKVKQMKELSQGYNI 98 (314)
T ss_pred cCCCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE-C--CCcccc-ceeCHHHHHHHHHHHHhhchhhhCcEEE
Confidence 34578999999997654 466666666443 666666543 2 221111 22355666666666665541 1235999
Q ss_pred EEeChhHHHHHHHHHhCCc--ceeEEEEeccccCC
Q 030815 81 VGHSLGGLSLALAAEKFPH--KISVAIFLTAFMPD 113 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~~~~--~~~~~v~~~~~~~~ 113 (171)
+|+|.||.++..++++.++ .|+.+|.++++-.+
T Consensus 99 IGfSQGGlflRa~ierc~~~p~V~nlISlggph~G 133 (314)
T PLN02633 99 VGRSQGNLVARGLIEFCDGGPPVYNYISLAGPHAG 133 (314)
T ss_pred EEEccchHHHHHHHHHCCCCCCcceEEEecCCCCC
Confidence 9999999999999999986 59999999987643
No 156
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.25 E-value=5.2e-06 Score=64.27 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCCCc-----hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhH-HHHHHHHHhc---CCCC
Q 030815 6 KQKHFVLVHGSNHGA-----WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYN-EPLLEILASL---SADE 76 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~-----~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~-~~~~~~i~~~---~~~~ 76 (171)
-++|++++|..-..- ..-+.++..|.++|+.|+.++|++-..+.. ..++++++ +.+.+.++.. .+.+
T Consensus 106 ~~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~----~~~~edYi~e~l~~aid~v~~itg~~ 181 (445)
T COG3243 106 LKRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLA----AKNLEDYILEGLSEAIDTVKDITGQK 181 (445)
T ss_pred CCCceEeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhh----hccHHHHHHHHHHHHHHHHHHHhCcc
Confidence 467899999876433 223568888999999999999987655433 23566666 4444444433 3678
Q ss_pred cEEEEEeChhHHHHHHHHHhCCcc-eeEEEEeccccC
Q 030815 77 KVVIVGHSLGGLSLALAAEKFPHK-ISVAIFLTAFMP 112 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~~~-~~~~v~~~~~~~ 112 (171)
+|.++|||.||.++..++..++.+ |+.++++..+..
T Consensus 182 ~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~D 218 (445)
T COG3243 182 DINLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVD 218 (445)
T ss_pred ccceeeEecchHHHHHHHHhhhhcccccceeeecchh
Confidence 999999999999999999888877 999998887653
No 157
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=98.24 E-value=2.8e-06 Score=68.53 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=63.0
Q ss_pred hHHhhHHHHHhCCCeEEEecCCCCCCCCccccc-cccHHHhHHHHHHHHHhc---CCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 22 CWYKVKPQLEAAGHRVTALDLTASGIDMKKIQD-VHSFYEYNEPLLEILASL---SADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 22 ~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~-~~~~~~~~~~~~~~i~~~---~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
.|..+++.|...||. ..++.+..+.+..... .....++...+...|+.. ...++++|+||||||.++++++...
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~wv 234 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKWV 234 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeecccccccCccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHhc
Confidence 468999999999997 4555555544433211 112344444555555543 3578999999999999999988742
Q ss_pred C---------------cceeEEEEeccccCCCCCC
Q 030815 98 P---------------HKISVAIFLTAFMPDTKHQ 117 (171)
Q Consensus 98 ~---------------~~~~~~v~~~~~~~~~~~~ 117 (171)
. +.|+..|.++++..+..+.
T Consensus 235 ~~~~~~gG~gG~~W~dKyI~s~I~Iagp~lGs~Ka 269 (642)
T PLN02517 235 EAPAPMGGGGGPGWCAKHIKAVMNIGGPFLGVPKA 269 (642)
T ss_pred cccccccCCcchHHHHHHHHHheecccccCCcHHH
Confidence 1 2388999999887665444
No 158
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=98.23 E-value=6.3e-05 Score=57.18 Aligned_cols=110 Identities=12% Similarity=0.157 Sum_probs=71.8
Q ss_pred CCeEEEEcCCCCCch---hHHhhHHHHHhCCCeEEEecCCCCCCC--C--------------cccccc------------
Q 030815 7 QKHFVLVHGSNHGAW---CWYKVKPQLEAAGHRVTALDLTASGID--M--------------KKIQDV------------ 55 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~---~~~~~~~~l~~~g~~v~~~d~~g~g~s--~--------------~~~~~~------------ 55 (171)
.-.||++||.+.+.+ ....+.+.|.+.|+.++.+..|.--.. . ......
T Consensus 87 ~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (310)
T PF12048_consen 87 QGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEA 166 (310)
T ss_pred ceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHh
Confidence 447999999998875 245677788888999999887761100 0 000000
Q ss_pred ccH----HHhHHHHHHHHHhc--CCCCcEEEEEeChhHHHHHHHHHhCC-cceeEEEEeccccCCCCC
Q 030815 56 HSF----YEYNEPLLEILASL--SADEKVVIVGHSLGGLSLALAAEKFP-HKISVAIFLTAFMPDTKH 116 (171)
Q Consensus 56 ~~~----~~~~~~~~~~i~~~--~~~~~~~lvG~S~Gg~~a~~~~~~~~-~~~~~~v~~~~~~~~~~~ 116 (171)
... +.....+...+..+ .+..+++|+||+.|+.++..+....+ ..++++|++++..+....
T Consensus 167 ~~~~~~~~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~p~~~~ 234 (310)
T PF12048_consen 167 EAREAYEERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYWPQPDR 234 (310)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCCCcchh
Confidence 011 12222233333333 25556999999999999999988775 459999999999876544
No 159
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.9e-05 Score=57.76 Aligned_cols=103 Identities=20% Similarity=0.223 Sum_probs=72.3
Q ss_pred CeEEEEcCCCCCchh--HHhhHHHHHhC-CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc-CCCCcEEEEEe
Q 030815 8 KHFVLVHGSNHGAWC--WYKVKPQLEAA-GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL-SADEKVVIVGH 83 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~--~~~~~~~l~~~-g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~lvG~ 83 (171)
-|+|++||++++... +..+.+.+.+. |..+++.+. |-|- .......+.++++.+.+.+... .-.+-++++|+
T Consensus 24 ~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~lei-g~g~---~~s~l~pl~~Qv~~~ce~v~~m~~lsqGynivg~ 99 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEI-GDGI---KDSSLMPLWEQVDVACEKVKQMPELSQGYNIVGY 99 (296)
T ss_pred CCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEe-cCCc---chhhhccHHHHHHHHHHHHhcchhccCceEEEEE
Confidence 579999999987765 77788877765 888888886 3331 1112234555566555555543 12456999999
Q ss_pred ChhHHHHHHHHHhCCc-ceeEEEEeccccCCC
Q 030815 84 SLGGLSLALAAEKFPH-KISVAIFLTAFMPDT 114 (171)
Q Consensus 84 S~Gg~~a~~~~~~~~~-~~~~~v~~~~~~~~~ 114 (171)
|.||.++..+++..++ .+...|.++++-.+.
T Consensus 100 SQGglv~Raliq~cd~ppV~n~ISL~gPhaG~ 131 (296)
T KOG2541|consen 100 SQGGLVARALIQFCDNPPVKNFISLGGPHAGI 131 (296)
T ss_pred ccccHHHHHHHHhCCCCCcceeEeccCCcCCc
Confidence 9999999999988754 588888888766443
No 160
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.21 E-value=2e-06 Score=62.94 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=71.6
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccc----cc----------------cccHHHhHHH
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKI----QD----------------VHSFYEYNEP 64 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~----~~----------------~~~~~~~~~~ 64 (171)
.+-|.||-.||++++...|..+.. +...||.++..|.||.|.|+..+ .. .+-......|
T Consensus 81 ~~~P~vV~fhGY~g~~g~~~~~l~-wa~~Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D 159 (321)
T COG3458 81 GKLPAVVQFHGYGGRGGEWHDMLH-WAVAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLD 159 (321)
T ss_pred CccceEEEEeeccCCCCCcccccc-ccccceeEEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHH
Confidence 567889999999999987755443 34459999999999999874311 00 0001122233
Q ss_pred HHHHHHhc-----CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCC
Q 030815 65 LLEILASL-----SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPD 113 (171)
Q Consensus 65 ~~~~i~~~-----~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~ 113 (171)
...+++.+ -+..+|.+.|.|.||.+++.++...| +++++++.-|+...
T Consensus 160 ~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik~~~~~~Pfl~d 212 (321)
T COG3458 160 AVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIKAVVADYPFLSD 212 (321)
T ss_pred HHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhhccccccccccc
Confidence 33333333 26678999999999999998876544 47777766666543
No 161
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.15 E-value=1.9e-05 Score=63.88 Aligned_cols=126 Identities=12% Similarity=0.043 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCC---CCch-hHHhhHHHHHhCCCeEEEecCC----CCCCCCccc--cccccHHHh---HHHHHHHHHhc
Q 030815 6 KQKHFVLVHGSN---HGAW-CWYKVKPQLEAAGHRVTALDLT----ASGIDMKKI--QDVHSFYEY---NEPLLEILASL 72 (171)
Q Consensus 6 ~~~~vv~lHG~~---~~~~-~~~~~~~~l~~~g~~v~~~d~~----g~g~s~~~~--~~~~~~~~~---~~~~~~~i~~~ 72 (171)
+-|++|++||.+ ++.. ....-...+..++.-|++++|| |+-.+.... .....+.|+ .+++.+-|...
T Consensus 124 ~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~F 203 (535)
T PF00135_consen 124 KLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAAF 203 (535)
T ss_dssp SEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGGG
T ss_pred ccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccCchhhhhhhhHHHHHHHHhhhhhc
Confidence 459999999987 3331 2333344555668999999998 222111111 122334444 45566666666
Q ss_pred -CCCCcEEEEEeChhHHHHHHHHHhC--CcceeEEEEeccccCCCCCC-h--hHHHHHHhhcCCC
Q 030815 73 -SADEKVVIVGHSLGGLSLALAAEKF--PHKISVAIFLTAFMPDTKHQ-P--SYVVERFFERIPS 131 (171)
Q Consensus 73 -~~~~~~~lvG~S~Gg~~a~~~~~~~--~~~~~~~v~~~~~~~~~~~~-~--~~~~~~~~~~~~~ 131 (171)
.+..+|.|+|||.||..+...+... ...++++|+.++........ . .....++.+.++.
T Consensus 204 GGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~~~~~~~~~~~~~~~~la~~lgc 268 (535)
T PF00135_consen 204 GGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSALSPWATSENPEQQAQKLAKALGC 268 (535)
T ss_dssp TEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TTSTTSSBSHHHHHHHHHHHHTTS
T ss_pred ccCCcceeeeeecccccccceeeeccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence 3566899999999999776665542 35699999999854332222 1 2345555555443
No 162
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.15 E-value=5.8e-06 Score=58.92 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCeEEEEcCCCCCch---hHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC---CCCcEEE
Q 030815 7 QKHFVLVHGSNHGAW---CWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS---ADEKVVI 80 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~---~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~l 80 (171)
+-.|||+-|++.+.. .-+.+...|.+.++.++.+.++.+-.. ....++.+.++++..+++++. ....|+|
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G----~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNG----YGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccc----cccccccccHHHHHHHHHHhhccCcccceEE
Confidence 346899999987643 356788899898999999987743211 123478888889998888772 2348999
Q ss_pred EEeChhHHHHHHHHHh--CCcceeEEEEeccccCCC
Q 030815 81 VGHSLGGLSLALAAEK--FPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~--~~~~~~~~v~~~~~~~~~ 114 (171)
+|||.|+.=.++++-. .+.++...|+.+|.....
T Consensus 112 ~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 112 VGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred EecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 9999999988777733 356688888888765433
No 163
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=98.12 E-value=3.6e-05 Score=61.64 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=71.7
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHH------------------HHHhCCCeEEEecCC-CCCCCCcccc-ccccHHHhHHH
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKP------------------QLEAAGHRVTALDLT-ASGIDMKKIQ-DVHSFYEYNEP 64 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~------------------~l~~~g~~v~~~d~~-g~g~s~~~~~-~~~~~~~~~~~ 64 (171)
.+.|++|+++|..+.+..+-.+.| ...+ -..++.+|.| |+|.|..... ...+.++.+++
T Consensus 75 ~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~-~~~~l~iDqP~G~G~S~~~~~~~~~~~~~~a~d 153 (462)
T PTZ00472 75 PEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN-EAYVIYVDQPAGVGFSYADKADYDHNESEVSED 153 (462)
T ss_pred CCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc-ccCeEEEeCCCCcCcccCCCCCCCCChHHHHHH
Confidence 457999999999876654322111 1112 2457778865 8887754322 22355777888
Q ss_pred HHHHHHhc------CCCCcEEEEEeChhHHHHHHHHHhC----------CcceeEEEEeccccCC
Q 030815 65 LLEILASL------SADEKVVIVGHSLGGLSLALAAEKF----------PHKISVAIFLTAFMPD 113 (171)
Q Consensus 65 ~~~~i~~~------~~~~~~~lvG~S~Gg~~a~~~~~~~----------~~~~~~~v~~~~~~~~ 113 (171)
+.++++.. ....+++|+|||+||..+..++.+. +-+++|+++-.++..+
T Consensus 154 ~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~dp 218 (462)
T PTZ00472 154 MYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLTDP 218 (462)
T ss_pred HHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEeccccCh
Confidence 88777753 2458999999999999888777653 1247899888877643
No 164
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3.1e-05 Score=62.88 Aligned_cols=104 Identities=19% Similarity=0.124 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCCCCc---hhHHh----hHHHHHhCCCeEEEecCCCCCCCCcccc-------ccccHHHhHHHHHHHHHh
Q 030815 6 KQKHFVLVHGSNHGA---WCWYK----VKPQLEAAGHRVTALDLTASGIDMKKIQ-------DVHSFYEYNEPLLEILAS 71 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~---~~~~~----~~~~l~~~g~~v~~~d~~g~g~s~~~~~-------~~~~~~~~~~~~~~~i~~ 71 (171)
+-|+++++=|..+-+ .+|.. -...|++.||.|+.+|-||......... ..-.++|+++-+..+.++
T Consensus 641 kYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq 720 (867)
T KOG2281|consen 641 KYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQ 720 (867)
T ss_pred CCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHh
Confidence 457899998877432 22322 2346788899999999998654433221 222567777777666666
Q ss_pred c--CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEecc
Q 030815 72 L--SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTA 109 (171)
Q Consensus 72 ~--~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~ 109 (171)
. -+-.+|.+-|+|+||++++..+.++|+-++..|.=+|
T Consensus 721 ~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGap 760 (867)
T KOG2281|consen 721 TGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAP 760 (867)
T ss_pred cCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCc
Confidence 5 3678999999999999999999999997777665444
No 165
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=5.7e-05 Score=63.83 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCCCchh----HHhhHHH-HHhCCCeEEEecCCCCCCCCccc-------cccccHHHhHHHHHHHHHhc-
Q 030815 6 KQKHFVLVHGSNHGAWC----WYKVKPQ-LEAAGHRVTALDLTASGIDMKKI-------QDVHSFYEYNEPLLEILASL- 72 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~----~~~~~~~-l~~~g~~v~~~d~~g~g~s~~~~-------~~~~~~~~~~~~~~~~i~~~- 72 (171)
+=|.++.+||..++... ...+.+. ....|+.|+.+|.||-|...... ......+|+...+..+++..
T Consensus 525 kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~ 604 (755)
T KOG2100|consen 525 KYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPF 604 (755)
T ss_pred CCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhccc
Confidence 44677788888764321 1233344 45569999999999987654331 11224555555555555544
Q ss_pred CCCCcEEEEEeChhHHHHHHHHHhCC-cceeEEEEeccccC
Q 030815 73 SADEKVVIVGHSLGGLSLALAAEKFP-HKISVAIFLTAFMP 112 (171)
Q Consensus 73 ~~~~~~~lvG~S~Gg~~a~~~~~~~~-~~~~~~v~~~~~~~ 112 (171)
.+..++.+.|+|+||.+++.++...+ .-+++.++++|...
T Consensus 605 iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd 645 (755)
T KOG2100|consen 605 IDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTD 645 (755)
T ss_pred ccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceee
Confidence 47789999999999999999999987 44566688888653
No 166
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00036 Score=49.68 Aligned_cols=105 Identities=25% Similarity=0.258 Sum_probs=63.9
Q ss_pred CCeEEEEcCCCC-CchhH---------------HhhHHHHHhCCCeEEEecCCC---CCCCCcccc-ccccHHHhHHHHH
Q 030815 7 QKHFVLVHGSNH-GAWCW---------------YKVKPQLEAAGHRVTALDLTA---SGIDMKKIQ-DVHSFYEYNEPLL 66 (171)
Q Consensus 7 ~~~vv~lHG~~~-~~~~~---------------~~~~~~l~~~g~~v~~~d~~g---~g~s~~~~~-~~~~~~~~~~~~~ 66 (171)
+..+|++||.|- .+.+| .+.+++-.+.||.|++.+--- +-.+...+. ...+..+.+.-+.
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw 180 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVW 180 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHH
Confidence 457999999983 22233 134555566799999886431 111111111 1123333333333
Q ss_pred HHHHhcCCCCcEEEEEeChhHHHHHHHHHhCCc--ceeEEEEecccc
Q 030815 67 EILASLSADEKVVIVGHSLGGLSLALAAEKFPH--KISVAIFLTAFM 111 (171)
Q Consensus 67 ~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~~--~~~~~v~~~~~~ 111 (171)
..+-.......+.+|.||+||...+.+..+.++ +|.++.+.+.++
T Consensus 181 ~~~v~pa~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~~ 227 (297)
T KOG3967|consen 181 KNIVLPAKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSAM 227 (297)
T ss_pred HHHhcccCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeecccc
Confidence 333322377889999999999999999999874 577777666554
No 167
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=97.89 E-value=1.6e-05 Score=62.37 Aligned_cols=88 Identities=19% Similarity=0.323 Sum_probs=59.3
Q ss_pred hhHHhhHHHHHhCCCe----EE--EecCCCCCCCCccccccccHHHhHHHHHHHHHhc---CCCCcEEEEEeChhHHHHH
Q 030815 21 WCWYKVKPQLEAAGHR----VT--ALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL---SADEKVVIVGHSLGGLSLA 91 (171)
Q Consensus 21 ~~~~~~~~~l~~~g~~----v~--~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~lvG~S~Gg~~a~ 91 (171)
..|..+++.|...||. ++ .+||| +|-... ...+++...+...|+.. .+.+|++|++||||+.+..
T Consensus 124 ~~w~~~i~~lv~~GYe~~~~l~ga~YDwR---ls~~~~---e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~l 197 (473)
T KOG2369|consen 124 WYWHELIENLVGIGYERGKTLFGAPYDWR---LSYHNS---EERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVL 197 (473)
T ss_pred HHHHHHHHHHHhhCcccCceeeccccchh---hccCCh---hHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHH
Confidence 4688999999988887 32 34666 221111 13444455555555544 4669999999999999999
Q ss_pred HHHHhCCc--------ceeEEEEeccccCCC
Q 030815 92 LAAEKFPH--------KISVAIFLTAFMPDT 114 (171)
Q Consensus 92 ~~~~~~~~--------~~~~~v~~~~~~~~~ 114 (171)
++...++. .++..|-++++....
T Consensus 198 yFl~w~~~~~~~W~~k~I~sfvnig~p~lG~ 228 (473)
T KOG2369|consen 198 YFLKWVEAEGPAWCDKYIKSFVNIGAPWLGS 228 (473)
T ss_pred HHHhcccccchhHHHHHHHHHHccCchhcCC
Confidence 99998876 266666666655443
No 168
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=97.86 E-value=6.4e-05 Score=60.75 Aligned_cols=109 Identities=14% Similarity=0.024 Sum_probs=73.6
Q ss_pred ccCCCeEEEEc--CCCCC---chhHHhhHH---HHHhCCCeEEEecCCCCCCCCcccccccc--HHHhHHHHHHHHHhcC
Q 030815 4 AKKQKHFVLVH--GSNHG---AWCWYKVKP---QLEAAGHRVTALDLTASGIDMKKIQDVHS--FYEYNEPLLEILASLS 73 (171)
Q Consensus 4 ~~~~~~vv~lH--G~~~~---~~~~~~~~~---~l~~~g~~v~~~d~~g~g~s~~~~~~~~~--~~~~~~~~~~~i~~~~ 73 (171)
.++.|+++..+ .+.-. ......... .++++||.|+..|.||.|.|.+......+ .+|-.+.+.-+.++-.
T Consensus 42 ~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpW 121 (563)
T COG2936 42 AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPW 121 (563)
T ss_pred CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccceeccccccchhHHHHHHHhCCc
Confidence 35667888888 33322 111222333 57788999999999999999887654333 2222222222223324
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
.+.+|..+|-|++|...+.+|...|..++.++-.++...
T Consensus 122 sNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D 160 (563)
T COG2936 122 SNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVD 160 (563)
T ss_pred cCCeeeeecccHHHHHHHHHHhcCCchheeecccccccc
Confidence 678999999999999999999988887888876666553
No 169
>COG0627 Predicted esterase [General function prediction only]
Probab=97.78 E-value=0.00018 Score=54.78 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCCCchhH---HhhHHHHHhCCCeEEEecCC--------------CCCCCCccc-------cccccHHHh
Q 030815 6 KQKHFVLVHGSNHGAWCW---YKVKPQLEAAGHRVTALDLT--------------ASGIDMKKI-------QDVHSFYEY 61 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~---~~~~~~l~~~g~~v~~~d~~--------------g~g~s~~~~-------~~~~~~~~~ 61 (171)
.-|+++++||...+...+ ..+-+.....|..++++|-. |-+.|-... ...+.++++
T Consensus 53 ~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~tf 132 (316)
T COG0627 53 DIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWETF 132 (316)
T ss_pred CCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchhHH
Confidence 357788889998775443 23445555667878776322 222221111 011344444
Q ss_pred -HHHHHHHHHhc-C-CC--CcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 62 -NEPLLEILASL-S-AD--EKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 62 -~~~~~~~i~~~-~-~~--~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
.+++-..+++. . .. +...++||||||.-|+.+|.++|+++..+..++|+..+.
T Consensus 133 l~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s 190 (316)
T COG0627 133 LTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPS 190 (316)
T ss_pred HHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccc
Confidence 33444344433 2 11 278999999999999999999999999999999988665
No 170
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.78 E-value=0.00012 Score=49.71 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCc----ceeEEEEeccccCCC
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFPH----KISVAIFLTAFMPDT 114 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~~----~~~~~v~~~~~~~~~ 114 (171)
+..+++++|||+||.+|..++.++.. +...++.++++....
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~~~~ 70 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRVGN 70 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCcccc
Confidence 67899999999999999999887754 577788888776544
No 171
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.00025 Score=54.88 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=63.4
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc---CCCCcEEEEEe
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL---SADEKVVIVGH 83 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~lvG~ 83 (171)
....||..|=|+-++-=+.+.+.|.++|+.|+.+|-- .......+.++.++|+..+++.. .+..++.|+|+
T Consensus 260 d~~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsL------RYfW~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGy 333 (456)
T COG3946 260 DTVAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSL------RYFWSERTPEQIAADLSRLIRFYARRWGAKRVLLIGY 333 (456)
T ss_pred ceEEEEEecCCchhhhhHHHHHHHHHCCCceeeeehh------hhhhccCCHHHHHHHHHHHHHHHHHhhCcceEEEEee
Confidence 4557777777776666678999999999999999832 11223346677777777777665 36789999999
Q ss_pred ChhHHHHHHHHHhCC
Q 030815 84 SLGGLSLALAAEKFP 98 (171)
Q Consensus 84 S~Gg~~a~~~~~~~~ 98 (171)
|+|+-+.-..-.++|
T Consensus 334 SfGADvlP~~~n~L~ 348 (456)
T COG3946 334 SFGADVLPFAYNRLP 348 (456)
T ss_pred cccchhhHHHHHhCC
Confidence 999987776666654
No 172
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=97.65 E-value=0.00029 Score=61.21 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=72.3
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
...|+++|+|.+-+.....+.++..| ..|.+|......-+..+++..++-+.+.++++....+..++|+|
T Consensus 2121 se~~~~Ffv~pIEG~tt~l~~la~rl----------e~PaYglQ~T~~vP~dSies~A~~yirqirkvQP~GPYrl~GYS 2190 (2376)
T KOG1202|consen 2121 SEEPPLFFVHPIEGFTTALESLASRL----------EIPAYGLQCTEAVPLDSIESLAAYYIRQIRKVQPEGPYRLAGYS 2190 (2376)
T ss_pred ccCCceEEEeccccchHHHHHHHhhc----------CCcchhhhccccCCcchHHHHHHHHHHHHHhcCCCCCeeeeccc
Confidence 46789999999988877666666555 23444443333334468999999999999999888999999999
Q ss_pred hhHHHHHHHHHhCC--cceeEEEEeccc
Q 030815 85 LGGLSLALAAEKFP--HKISVAIFLTAF 110 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~--~~~~~~v~~~~~ 110 (171)
+|+.++..++..+. +....+|++++.
T Consensus 2191 yG~~l~f~ma~~Lqe~~~~~~lillDGs 2218 (2376)
T KOG1202|consen 2191 YGACLAFEMASQLQEQQSPAPLILLDGS 2218 (2376)
T ss_pred hhHHHHHHHHHHHHhhcCCCcEEEecCc
Confidence 99999999988653 335557777753
No 173
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.57 E-value=0.00028 Score=46.97 Aligned_cols=36 Identities=39% Similarity=0.577 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 61 YNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 61 ~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
..+.+.+..+.. ...++++.|||+||.+|..++...
T Consensus 50 ~~~~l~~~~~~~-~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 50 ILDALKELVEKY-PDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHS-TTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-cCccchhhccchHHHHHHHHHHhh
Confidence 344455544444 567899999999999999998764
No 174
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=97.56 E-value=0.00056 Score=47.91 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=56.5
Q ss_pred eEEEEcCCCCCchh---HHhhHHHHHhC-C---CeEEEecCCCCCCCC-ccccccccHHHhHHHHHHHHHhcCCCCcEEE
Q 030815 9 HFVLVHGSNHGAWC---WYKVKPQLEAA-G---HRVTALDLTASGIDM-KKIQDVHSFYEYNEPLLEILASLSADEKVVI 80 (171)
Q Consensus 9 ~vv~lHG~~~~~~~---~~~~~~~l~~~-g---~~v~~~d~~g~g~s~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 80 (171)
-||+..|.+..... -..+.+.+++. | ..+..++||...... ..........+..+.+.+..... ...+++|
T Consensus 7 ~vi~aRGT~E~~g~~~~g~~~~~~l~~~~g~~~~~~~~V~YpA~~~~~~y~~S~~~G~~~~~~~i~~~~~~C-P~~kivl 85 (179)
T PF01083_consen 7 HVIFARGTGEPPGVGRVGPPFADALQAQPGGTSVAVQGVEYPASLGPNSYGDSVAAGVANLVRLIEEYAARC-PNTKIVL 85 (179)
T ss_dssp EEEEE--TTSSTTTCCCHHHHHHHHHHHCTTCEEEEEE--S---SCGGSCHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE
T ss_pred EEEEecCCCCCCCCccccHHHHHHHHhhcCCCeeEEEecCCCCCCCcccccccHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 46777777654321 12334444432 3 334445676432211 00000112334444444444555 6889999
Q ss_pred EEeChhHHHHHHHHHh--C----CcceeEEEEeccccCCC
Q 030815 81 VGHSLGGLSLALAAEK--F----PHKISVAIFLTAFMPDT 114 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~--~----~~~~~~~v~~~~~~~~~ 114 (171)
+|||.|+.++..++.. + .++|.++++++-+....
T Consensus 86 ~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~~~~ 125 (179)
T PF01083_consen 86 AGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPRRGA 125 (179)
T ss_dssp EEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TTTBT
T ss_pred EecccccHHHHHHHHhccCChhhhhhEEEEEEecCCcccC
Confidence 9999999999999888 3 36799999999777543
No 175
>KOG3101 consensus Esterase D [General function prediction only]
Probab=97.56 E-value=0.00018 Score=51.15 Aligned_cols=113 Identities=20% Similarity=0.169 Sum_probs=70.1
Q ss_pred cCCCeEEEEcCCCCCchhHH---hhHHHHHhCCCeEEEecC--CCCC---C--CCc-------------cccc-cccHHH
Q 030815 5 KKQKHFVLVHGSNHGAWCWY---KVKPQLEAAGHRVTALDL--TASG---I--DMK-------------KIQD-VHSFYE 60 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~---~~~~~l~~~g~~v~~~d~--~g~g---~--s~~-------------~~~~-~~~~~~ 60 (171)
+.-|++.++-|+....+.+. .+-+.-.++|..|+.||- ||.. . |+. .+.. .+.+.+
T Consensus 42 k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrMYd 121 (283)
T KOG3101|consen 42 KRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRMYD 121 (283)
T ss_pred CcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhHHH
Confidence 44689999999987766542 233344556899999974 3321 1 110 0000 012222
Q ss_pred h-HHHHHHHHHhc---CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCCCCC
Q 030815 61 Y-NEPLLEILASL---SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDTKHQ 117 (171)
Q Consensus 61 ~-~~~~~~~i~~~---~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~ 117 (171)
+ ++.+.+.+... .+..++.|.||||||.-|+..+.+.+.+.+.+-..+|-+.+..-+
T Consensus 122 Yv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~cp 182 (283)
T KOG3101|consen 122 YVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINCP 182 (283)
T ss_pred HHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccCc
Confidence 2 22333333321 255679999999999999999999999999988888776554433
No 176
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=97.55 E-value=0.0009 Score=50.49 Aligned_cols=79 Identities=23% Similarity=0.140 Sum_probs=47.6
Q ss_pred hHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc---------CCCCcEEEEEeChhHHHHHHHHHh
Q 030815 26 VKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL---------SADEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 26 ~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~---------~~~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
++..+-++||.|+++||.|.|.. . ..-......+.+.++.. ....++.++|||.||.-+..+++.
T Consensus 18 ~l~~~L~~GyaVv~pDY~Glg~~---y---~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGLGTP---Y---LNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHHHCCCEEEecCCCCCCCc---c---cCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 45556677999999999999861 1 01122222222222221 134689999999999977666543
Q ss_pred C----Cc-c--eeEEEEeccc
Q 030815 97 F----PH-K--ISVAIFLTAF 110 (171)
Q Consensus 97 ~----~~-~--~~~~v~~~~~ 110 (171)
. |+ + +.+.++.+++
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~ 112 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPP 112 (290)
T ss_pred hHHhCcccccceeEEeccCCc
Confidence 2 33 2 5666655543
No 177
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.54 E-value=0.0038 Score=43.58 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=64.3
Q ss_pred CCCeEEEEcCCCCCchh----HH----hhHHH----HHh--CCCeEEEecCCCCCCC-Cccc--cccccHHHhHHHHHHH
Q 030815 6 KQKHFVLVHGSNHGAWC----WY----KVKPQ----LEA--AGHRVTALDLTASGID-MKKI--QDVHSFYEYNEPLLEI 68 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~----~~----~~~~~----l~~--~g~~v~~~d~~g~g~s-~~~~--~~~~~~~~~~~~~~~~ 68 (171)
...+.++++|.+.+... +. .+.+. ... .+-++-++.|-|+--. .... .....-+.-+.++..+
T Consensus 18 A~~Vav~VPG~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vAvV~WlgYdaP~~~~~~a~~~~~A~~ga~~L~~f 97 (177)
T PF06259_consen 18 ADHVAVLVPGTGTTLDSFLGGMDDEARALRAAAARAARAAGPGGSVAVVAWLGYDAPAGGLPDAASPGYARAGAPRLARF 97 (177)
T ss_pred cCeeEEEcCCCCCCcccccchhHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCCccccccCchHHHHHHHHHHHH
Confidence 45688999999865432 11 12221 111 1234544444443221 1000 0111234445556666
Q ss_pred HHhc---C-CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 69 LASL---S-ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 69 i~~~---~-~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
++-+ . ....+.++|||+|+.++-.++...+..+..+|+++.+-...
T Consensus 98 ~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~g~ 147 (177)
T PF06259_consen 98 LDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGMGV 147 (177)
T ss_pred HHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCCCCC
Confidence 6555 2 45689999999999999999988777899999998765443
No 178
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.51 E-value=0.00059 Score=53.06 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=75.0
Q ss_pred CeEEEEcCCCCCchhHH---hhHHHHHh-CCCeEEEecCCCCCCCCcc-------c--cccccHHHhHHHHHHHHHhc--
Q 030815 8 KHFVLVHGSNHGAWCWY---KVKPQLEA-AGHRVTALDLTASGIDMKK-------I--QDVHSFYEYNEPLLEILASL-- 72 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~---~~~~~l~~-~g~~v~~~d~~g~g~s~~~-------~--~~~~~~~~~~~~~~~~i~~~-- 72 (171)
-||+|--|.-++.+.+- .+...+++ .+--++-+++|.+|.|..- . -...+.++-.+|...+|..+
T Consensus 81 gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~ 160 (492)
T KOG2183|consen 81 GPIFFYTGNEGDIEWFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKR 160 (492)
T ss_pred CceEEEeCCcccHHHHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhh
Confidence 67888888887766432 22333322 2566888899999987421 1 12346777788888888777
Q ss_pred ---CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 73 ---SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 73 ---~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
....+|+.+|-|+||+++..+=.++|+-+.|...-+.+.
T Consensus 161 ~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPv 202 (492)
T KOG2183|consen 161 DLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPV 202 (492)
T ss_pred ccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCce
Confidence 245689999999999999999999999888887666554
No 179
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=97.37 E-value=0.0004 Score=49.74 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=64.5
Q ss_pred CeEEEEcCCCCCchh-HHhhHHHHHhCCCeEEEecCC-CCCCCCccccc-------cccHHHhHHHHHHHHHhc---CCC
Q 030815 8 KHFVLVHGSNHGAWC-WYKVKPQLEAAGHRVTALDLT-ASGIDMKKIQD-------VHSFYEYNEPLLEILASL---SAD 75 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~-~~~~~~~l~~~g~~v~~~d~~-g~g~s~~~~~~-------~~~~~~~~~~~~~~i~~~---~~~ 75 (171)
..||.+.-..+-... -+..+..++..||.|++||+. |-..+...... ..+...-.+++..+++.+ ...
T Consensus 40 ~~li~i~DvfG~~~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g~~ 119 (242)
T KOG3043|consen 40 KVLIVIQDVFGFQFPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHGDS 119 (242)
T ss_pred eEEEEEEeeeccccHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcCCc
Confidence 567777776665554 678899999999999999964 42222211000 012222233444444443 457
Q ss_pred CcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccc
Q 030815 76 EKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 76 ~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
.+|-++|.+|||-++..+....+ .+.+++..-|.
T Consensus 120 kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps 153 (242)
T KOG3043|consen 120 KKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPS 153 (242)
T ss_pred ceeeEEEEeecceEEEEeeccch-hheeeeEecCC
Confidence 89999999999998888877765 45655555443
No 180
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=97.37 E-value=0.0037 Score=45.65 Aligned_cols=83 Identities=23% Similarity=0.141 Sum_probs=51.1
Q ss_pred hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc-------CCCCcEEEEEeChhHHHHHHH
Q 030815 21 WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL-------SADEKVVIVGHSLGGLSLALA 93 (171)
Q Consensus 21 ~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~-------~~~~~~~lvG~S~Gg~~a~~~ 93 (171)
-.|+.+.+.|.++||.|++.-+.- + .++..-..+..+.....++.+ ...-++.-+|||+|+.+-+.+
T Consensus 34 itYr~lLe~La~~Gy~ViAtPy~~-t-----fDH~~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi 107 (250)
T PF07082_consen 34 ITYRYLLERLADRGYAVIATPYVV-T-----FDHQAIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLI 107 (250)
T ss_pred HHHHHHHHHHHhCCcEEEEEecCC-C-----CcHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHH
Confidence 358899999999999999875531 1 111111112222222222222 112478889999999988888
Q ss_pred HHhCCcceeEEEEecc
Q 030815 94 AEKFPHKISVAIFLTA 109 (171)
Q Consensus 94 ~~~~~~~~~~~v~~~~ 109 (171)
.......-++-++++-
T Consensus 108 ~s~~~~~r~gniliSF 123 (250)
T PF07082_consen 108 GSLFDVERAGNILISF 123 (250)
T ss_pred hhhccCcccceEEEec
Confidence 8777655567777763
No 181
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.32 E-value=0.0032 Score=50.11 Aligned_cols=108 Identities=19% Similarity=0.142 Sum_probs=79.0
Q ss_pred cCCCeEEEEcCCCCCchhHH-----hhHHHHHhCCCeEEEecCCCCCCCCccc------cccccHHHhHHHHHHHHHhcC
Q 030815 5 KKQKHFVLVHGSNHGAWCWY-----KVKPQLEAAGHRVTALDLTASGIDMKKI------QDVHSFYEYNEPLLEILASLS 73 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~-----~~~~~l~~~g~~v~~~d~~g~g~s~~~~------~~~~~~~~~~~~~~~~i~~~~ 73 (171)
..+|.-|+|-|=|.-.+.|. .+...-.+.|-.|+..++|-+|.|.... -...+..+...|+.++|+.+.
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n 163 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMN 163 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 45677777777654333341 2222233348899999999999875422 123477888899999998871
Q ss_pred ------CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 74 ------ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 74 ------~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
+..|.+..|-|+-|.++..+=+.+|+.+.|.|.-+++..
T Consensus 164 ~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~ 208 (514)
T KOG2182|consen 164 AKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVL 208 (514)
T ss_pred hhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccccee
Confidence 334999999999999999999999999999998887764
No 182
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.32 E-value=0.0025 Score=51.10 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=68.7
Q ss_pred cCCCeEEEEcCCCCCch------hHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc----CC
Q 030815 5 KKQKHFVLVHGSNHGAW------CWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL----SA 74 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~------~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~----~~ 74 (171)
..++|+|++-.-.++.. .=..+...|+. |+.|+.+.+.- .+. .-.++++.......+++.. .+
T Consensus 66 ~~krP~vViDPRAGHGpGIGGFK~dSevG~AL~~-GHPvYFV~F~p-----~P~-pgQTl~DV~~ae~~Fv~~V~~~hp~ 138 (581)
T PF11339_consen 66 PTKRPFVVIDPRAGHGPGIGGFKPDSEVGVALRA-GHPVYFVGFFP-----EPE-PGQTLEDVMRAEAAFVEEVAERHPD 138 (581)
T ss_pred CCCCCeEEeCCCCCCCCCccCCCcccHHHHHHHc-CCCeEEEEecC-----CCC-CCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 44566676643332221 12245666755 89988876541 111 2236777777666666665 23
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCC
Q 030815 75 DEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPD 113 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~ 113 (171)
..+++|+|-+.||+.++.++...|+++.-+|+-+.++..
T Consensus 139 ~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsy 177 (581)
T PF11339_consen 139 APKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSY 177 (581)
T ss_pred CCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCccc
Confidence 448999999999999999999999999999888776643
No 183
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.29 E-value=0.0012 Score=47.44 Aligned_cols=52 Identities=27% Similarity=0.308 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcC--CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 62 NEPLLEILASLS--ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 62 ~~~~~~~i~~~~--~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
.+...+.+.... +.++|.|+|.|.||.+|+.++..++ .|+.+|+++|.....
T Consensus 6 fe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~ 59 (213)
T PF08840_consen 6 FEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVF 59 (213)
T ss_dssp HHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEe
Confidence 344444554442 3468999999999999999999999 699999999876544
No 184
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=97.26 E-value=0.0018 Score=46.94 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=31.3
Q ss_pred CCcEEEEEeChhHHHHHHHHHhC----CcceeEEEEeccccCC
Q 030815 75 DEKVVIVGHSLGGLSLALAAEKF----PHKISVAIFLTAFMPD 113 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~~----~~~~~~~v~~~~~~~~ 113 (171)
..++.+.|||.||.+|.+++... .++|.+++...++-..
T Consensus 83 ~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPGf~ 125 (224)
T PF11187_consen 83 PGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPGFS 125 (224)
T ss_pred CCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCCCC
Confidence 34599999999999999999874 3578888877766543
No 185
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.25 E-value=0.0008 Score=48.82 Aligned_cols=25 Identities=40% Similarity=0.632 Sum_probs=21.4
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCC
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFP 98 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~ 98 (171)
+..++++.|||+||.+|..++....
T Consensus 126 p~~~i~vtGHSLGGaiA~l~a~~l~ 150 (229)
T cd00519 126 PDYKIIVTGHSLGGALASLLALDLR 150 (229)
T ss_pred CCceEEEEccCHHHHHHHHHHHHHH
Confidence 5678999999999999999887643
No 186
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=97.22 E-value=0.001 Score=47.50 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=43.1
Q ss_pred CeEEEecCCCCCCCCcc------cc--ccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 35 HRVTALDLTASGIDMKK------IQ--DVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 35 ~~v~~~d~~g~g~s~~~------~~--~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
-+|++|-||-....... .. ......|..+.+..+|++.++.++++|+|||.|+.+..+++.+.
T Consensus 46 ~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 46 CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 67888877643221111 00 11234556666777777777888999999999999999999875
No 187
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=97.21 E-value=0.01 Score=46.65 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=68.0
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHH-------------------HHHhCCCeEEEecCC-CCCCCCccccc--cccHHHhH
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKP-------------------QLEAAGHRVTALDLT-ASGIDMKKIQD--VHSFYEYN 62 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~-------------------~l~~~g~~v~~~d~~-g~g~s~~~~~~--~~~~~~~~ 62 (171)
.+.|.||++.|..+.+..+-.+.+ ...+ -..++-+|.| |.|.|...... ..+.++.+
T Consensus 38 ~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~-~an~l~iD~PvGtGfS~~~~~~~~~~~~~~~a 116 (415)
T PF00450_consen 38 EDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK-FANLLFIDQPVGTGFSYGNDPSDYVWNDDQAA 116 (415)
T ss_dssp CSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG-TSEEEEE--STTSTT-EESSGGGGS-SHHHHH
T ss_pred CCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc-ccceEEEeecCceEEeeccccccccchhhHHH
Confidence 467999999999887775532221 1111 2567778855 88888654422 23677778
Q ss_pred HHHHHHHHhc------CCCCcEEEEEeChhHHHHHHHHHh----C------CcceeEEEEeccccCC
Q 030815 63 EPLLEILASL------SADEKVVIVGHSLGGLSLALAAEK----F------PHKISVAIFLTAFMPD 113 (171)
Q Consensus 63 ~~~~~~i~~~------~~~~~~~lvG~S~Gg~~a~~~~~~----~------~~~~~~~v~~~~~~~~ 113 (171)
+++.++|+.. ....++.|.|.|+||..+-.++.+ . +-.++|+++-+|++.+
T Consensus 117 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~dp 183 (415)
T PF00450_consen 117 EDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWIDP 183 (415)
T ss_dssp HHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-SBH
T ss_pred HHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCccccc
Confidence 8888777775 256689999999999876666543 3 3458899988888754
No 188
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=97.20 E-value=0.0035 Score=44.97 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeE-EEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRV-TALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v-~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
.+..|||+-|+|.+...+..+.. ..++.+ ++.||+..- ++. + +...+.|.||++|
T Consensus 10 ~~~LilfF~GWg~d~~~f~hL~~---~~~~D~l~~yDYr~l~-----------~d~---~-------~~~y~~i~lvAWS 65 (213)
T PF04301_consen 10 GKELILFFAGWGMDPSPFSHLIL---PENYDVLICYDYRDLD-----------FDF---D-------LSGYREIYLVAWS 65 (213)
T ss_pred CCeEEEEEecCCCChHHhhhccC---CCCccEEEEecCcccc-----------ccc---c-------cccCceEEEEEEe
Confidence 35789999999999887665431 234654 456776221 110 1 2246899999999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEeccccCCCCCC---hhHHHHHHhhcCC
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFMPDTKHQ---PSYVVERFFERIP 130 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~ 130 (171)
||-++|..+....+ +...|.+++...+.... +........+.+.
T Consensus 66 mGVw~A~~~l~~~~--~~~aiAINGT~~Pid~~~GIpp~iF~~Tl~~l~ 112 (213)
T PF04301_consen 66 MGVWAANRVLQGIP--FKRAIAINGTPYPIDDEYGIPPAIFAGTLENLS 112 (213)
T ss_pred HHHHHHHHHhccCC--cceeEEEECCCCCcCCCCCCCHHHHHHHHHhCC
Confidence 99999988876643 66666676654333222 4555555555444
No 189
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.14 E-value=0.0012 Score=48.68 Aligned_cols=53 Identities=25% Similarity=0.357 Sum_probs=41.8
Q ss_pred HHHHHHHHHhc--CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 62 NEPLLEILASL--SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 62 ~~~~~~~i~~~--~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
.+++.-+|+.. .+..+..++|||+||.+++.++..+|+.+...++++|...-.
T Consensus 121 ~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~ 175 (264)
T COG2819 121 TEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWH 175 (264)
T ss_pred HHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhC
Confidence 34444455542 255669999999999999999999999999999999877533
No 190
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=97.13 E-value=0.0014 Score=50.40 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=36.8
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCcc-----eeEEEEeccccCCCCCCh
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFPHK-----ISVAIFLTAFMPDTKHQP 118 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~ 118 (171)
..+|+.|||||+|+.+..+++..+.++ |+.+++++.+.+.....+
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~~~~~W 267 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPSDPEEW 267 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCCCHHHH
Confidence 567899999999999999998877554 899999998886654443
No 191
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0013 Score=49.13 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=43.3
Q ss_pred HHHhHHHHHHHHHhc----CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 58 FYEYNEPLLEILASL----SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 58 ~~~~~~~~~~~i~~~----~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
...+.+++.=.++.. .....-+|.|.|+||.+++..+.++|+.+..++..+|.....
T Consensus 155 ~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 155 WRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred HHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 344445555555544 234557999999999999999999999999999999877533
No 192
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.02 E-value=0.016 Score=45.36 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=33.0
Q ss_pred CcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 76 EKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 76 ~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
-|++++|+|.||+++..++.-.|..+++++=-+++..
T Consensus 184 lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~ 220 (403)
T PF11144_consen 184 LPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL 220 (403)
T ss_pred CcEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence 4899999999999999999999999999987776654
No 193
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00052 Score=55.93 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=74.2
Q ss_pred ccCCCeEEEEcCCCC-Cc-hhHHhhHHHHHhCCCeEEEecCCCCCC---CCccccc----cccHHHhHHHHHHHHHhc-C
Q 030815 4 AKKQKHFVLVHGSNH-GA-WCWYKVKPQLEAAGHRVTALDLTASGI---DMKKIQD----VHSFYEYNEPLLEILASL-S 73 (171)
Q Consensus 4 ~~~~~~vv~lHG~~~-~~-~~~~~~~~~l~~~g~~v~~~d~~g~g~---s~~~~~~----~~~~~~~~~~~~~~i~~~-~ 73 (171)
.+.+|.+|+.+|..+ +. ..|..--..|-+.|..+...+.||-|. .+..... ..++.++......+++.- .
T Consensus 467 dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt 546 (712)
T KOG2237|consen 467 DGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYT 546 (712)
T ss_pred cCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCC
Confidence 356787888877643 32 235443334445788888889998653 3333322 234555555544444443 4
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCC
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPD 113 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~ 113 (171)
...+..+.|.|.||.++..+..++|+.+.++|+-.|++..
T Consensus 547 ~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDv 586 (712)
T KOG2237|consen 547 QPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDV 586 (712)
T ss_pred CccceeEecccCccchhHHHhccCchHhhhhhhcCcceeh
Confidence 6778999999999999999999999999999887777643
No 194
>PLN00413 triacylglycerol lipase
Probab=96.68 E-value=0.009 Score=47.64 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC--------CcceeEEEEecccc
Q 030815 60 EYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKF--------PHKISVAIFLTAFM 111 (171)
Q Consensus 60 ~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~--------~~~~~~~v~~~~~~ 111 (171)
+..+.+.++++.. +..++++.|||+||.+|..++... ..++.+++..+.+-
T Consensus 269 ~i~~~Lk~ll~~~-p~~kliVTGHSLGGALAtLaA~~L~~~~~~~~~~ri~~VYTFG~PR 327 (479)
T PLN00413 269 TILRHLKEIFDQN-PTSKFILSGHSLGGALAILFTAVLIMHDEEEMLERLEGVYTFGQPR 327 (479)
T ss_pred HHHHHHHHHHHHC-CCCeEEEEecCHHHHHHHHHHHHHHhccchhhccccceEEEeCCCC
Confidence 3455666666666 677899999999999999987532 23455666666544
No 195
>PLN02162 triacylglycerol lipase
Probab=96.62 E-value=0.0097 Score=47.36 Aligned_cols=49 Identities=27% Similarity=0.250 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC--------CcceeEEEEecccc
Q 030815 62 NEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKF--------PHKISVAIFLTAFM 111 (171)
Q Consensus 62 ~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~--------~~~~~~~v~~~~~~ 111 (171)
.+.+.+.+... +..++++.|||+||.+|..++... .+++.+++..+.+-
T Consensus 265 ~~~L~~lL~k~-p~~kliVTGHSLGGALAtLaAa~L~~~~~~~l~~~~~~vYTFGqPR 321 (475)
T PLN02162 265 RQMLRDKLARN-KNLKYILTGHSLGGALAALFPAILAIHGEDELLDKLEGIYTFGQPR 321 (475)
T ss_pred HHHHHHHHHhC-CCceEEEEecChHHHHHHHHHHHHHHccccccccccceEEEeCCCC
Confidence 34444555554 567899999999999999875421 12344566666443
No 196
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=96.61 E-value=0.011 Score=48.37 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=59.6
Q ss_pred CCeEEEEcCCC---CCchhH--HhhHHHHHhCCCeEEEecCC----CCCCCC-ccccccccHHHh---HHHHHHHHHhc-
Q 030815 7 QKHFVLVHGSN---HGAWCW--YKVKPQLEAAGHRVTALDLT----ASGIDM-KKIQDVHSFYEY---NEPLLEILASL- 72 (171)
Q Consensus 7 ~~~vv~lHG~~---~~~~~~--~~~~~~l~~~g~~v~~~d~~----g~g~s~-~~~~~~~~~~~~---~~~~~~~i~~~- 72 (171)
-|++|++||.+ ++...+ ......+..+..-|+.+.+| |+.... ........+.|+ .+++.+-|...
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~FG 191 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSFG 191 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 68999999987 333223 22233333435667777776 221111 011122233333 45555666666
Q ss_pred CCCCcEEEEEeChhHHHHHHHHHhC--CcceeEEEEecccc
Q 030815 73 SADEKVVIVGHSLGGLSLALAAEKF--PHKISVAIFLTAFM 111 (171)
Q Consensus 73 ~~~~~~~lvG~S~Gg~~a~~~~~~~--~~~~~~~v~~~~~~ 111 (171)
.+..+|.++|||.||..+..+..-. ...++++|.+++..
T Consensus 192 Gdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 192 GDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred CCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 4677899999999999876664321 24466666666544
No 197
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.59 E-value=0.0016 Score=50.48 Aligned_cols=90 Identities=24% Similarity=0.274 Sum_probs=53.1
Q ss_pred cCCCeEEEEcCCCC-CchhHHhhHHHHHhC--CCeEEEecCCCCCCCCcccccccc-HHHhHHHHHHHHHhcCCCCcEEE
Q 030815 5 KKQKHFVLVHGSNH-GAWCWYKVKPQLEAA--GHRVTALDLTASGIDMKKIQDVHS-FYEYNEPLLEILASLSADEKVVI 80 (171)
Q Consensus 5 ~~~~~vv~lHG~~~-~~~~~~~~~~~l~~~--g~~v~~~d~~g~g~s~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~l 80 (171)
+.+..+|+.||+.+ +...|..-++....+ +..++.....+. .......... -...++++.+.+... ...+|..
T Consensus 78 k~~HLvVlthGi~~~~~~~~~~~~~~~~kk~p~~~iv~~g~~~~--~~~T~~Gv~~lG~Rla~~~~e~~~~~-si~kISf 154 (405)
T KOG4372|consen 78 KPKHLVVLTHGLHGADMEYWKEKIEQMTKKMPDKLIVVRGKMNN--MCQTFDGVDVLGERLAEEVKETLYDY-SIEKISF 154 (405)
T ss_pred CCceEEEeccccccccHHHHHHHHHhhhcCCCcceEeeeccccc--hhhccccceeeecccHHHHhhhhhcc-ccceeee
Confidence 34567999999987 566677777766554 333333333322 1111111111 133344455555544 4689999
Q ss_pred EEeChhHHHHHHHHHhC
Q 030815 81 VGHSLGGLSLALAAEKF 97 (171)
Q Consensus 81 vG~S~Gg~~a~~~~~~~ 97 (171)
+|||+||.++..+....
T Consensus 155 vghSLGGLvar~AIgyl 171 (405)
T KOG4372|consen 155 VGHSLGGLVARYAIGYL 171 (405)
T ss_pred eeeecCCeeeeEEEEee
Confidence 99999999988876543
No 198
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=96.50 E-value=0.078 Score=38.18 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=65.8
Q ss_pred cCCCeEEEEcCCCCCchhHH----hhHHHHHhCCCeEEEecCCC---------CCCC----Cc----------------c
Q 030815 5 KKQKHFVLVHGSNHGAWCWY----KVKPQLEAAGHRVTALDLTA---------SGID----MK----------------K 51 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~----~~~~~l~~~g~~v~~~d~~g---------~g~s----~~----------------~ 51 (171)
.+++-|+||||+-.+...++ .+.+.+.+. +.++.+|-|- ...+ .. .
T Consensus 3 ~~k~rvLcLHGfrQsg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~ 81 (230)
T KOG2551|consen 3 QKKLRVLCLHGFRQSGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEAS 81 (230)
T ss_pred CCCceEEEecchhhccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhcccccc
Confidence 45678999999998887664 355555555 6666665441 1110 00 0
Q ss_pred ccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHh--CC------cceeEEEEeccccCCC
Q 030815 52 IQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEK--FP------HKISVAIFLTAFMPDT 114 (171)
Q Consensus 52 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~--~~------~~~~~~v~~~~~~~~~ 114 (171)
.......+...+.+.+.+... ..==-|+|.|.|+.++..++.. .. ..++-+|+++++....
T Consensus 82 ~~~~~~~eesl~yl~~~i~en--GPFDGllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~ 150 (230)
T KOG2551|consen 82 FTEYFGFEESLEYLEDYIKEN--GPFDGLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPS 150 (230)
T ss_pred cccccChHHHHHHHHHHHHHh--CCCccccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCc
Confidence 001123444455566666655 2234689999999999988772 11 1368889999888654
No 199
>PLN02454 triacylglycerol lipase
Probab=96.46 E-value=0.0082 Score=47.20 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=18.4
Q ss_pred cEEEEEeChhHHHHHHHHHhC
Q 030815 77 KVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+|++.|||+||.+|..+|...
T Consensus 229 sI~vTGHSLGGALAtLaA~di 249 (414)
T PLN02454 229 SIVLTGHSLGASLATLAAFDI 249 (414)
T ss_pred eEEEEecCHHHHHHHHHHHHH
Confidence 499999999999999998653
No 200
>PLN02571 triacylglycerol lipase
Probab=96.31 E-value=0.0099 Score=46.77 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=27.2
Q ss_pred HHhHHHHHHHHHhcCC-CCcEEEEEeChhHHHHHHHHHh
Q 030815 59 YEYNEPLLEILASLSA-DEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 59 ~~~~~~~~~~i~~~~~-~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
++...++..+++...+ ..+|++.|||+||.+|..+|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 3445566666665522 2369999999999999998865
No 201
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=96.16 E-value=0.018 Score=47.52 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=74.5
Q ss_pred cCCCeEEEEcCCCCCc--hhHHhhHHHHHhCCCeEEEecCCCCCCC---Cc----cccccccHHHhHHHHHHHHHhc-CC
Q 030815 5 KKQKHFVLVHGSNHGA--WCWYKVKPQLEAAGHRVTALDLTASGID---MK----KIQDVHSFYEYNEPLLEILASL-SA 74 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~g~g~s---~~----~~~~~~~~~~~~~~~~~~i~~~-~~ 74 (171)
+..|.+++-=|..+.. ..+....-.|..+|+-.-....||-|.- +. -.....++.|+.+....+++.- ..
T Consensus 446 g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~ 525 (682)
T COG1770 446 GSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTS 525 (682)
T ss_pred CCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCC
Confidence 4567777776655433 2244334455567876666666775432 21 1112346777777766666554 45
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccCCC
Q 030815 75 DEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMPDT 114 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~ 114 (171)
...+++.|-|.||++.-..+.+.|+.++++|+--|+...-
T Consensus 526 ~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvl 565 (682)
T COG1770 526 PDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVL 565 (682)
T ss_pred ccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchh
Confidence 6689999999999999999999999999999988887543
No 202
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=96.08 E-value=0.076 Score=38.61 Aligned_cols=80 Identities=19% Similarity=0.072 Sum_probs=50.0
Q ss_pred CCeEEEecCCCC-CC-CC-ccccccccHHHhHHHHHHHHHhc-CCCCcEEEEEeChhHHHHHHHHHhCCc------ceeE
Q 030815 34 GHRVTALDLTAS-GI-DM-KKIQDVHSFYEYNEPLLEILASL-SADEKVVIVGHSLGGLSLALAAEKFPH------KISV 103 (171)
Q Consensus 34 g~~v~~~d~~g~-g~-s~-~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~lvG~S~Gg~~a~~~~~~~~~------~~~~ 103 (171)
|+.+..+++|.. +- +. .......+..+=++.+.+.|+.. ....+++++|+|+|+.++..++.++.+ .--.
T Consensus 2 ~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~ 81 (225)
T PF08237_consen 2 GYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLS 81 (225)
T ss_pred CcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceE
Confidence 566777777751 10 00 11112236666677777777763 256889999999999999999887622 1335
Q ss_pred EEEeccccCC
Q 030815 104 AIFLTAFMPD 113 (171)
Q Consensus 104 ~v~~~~~~~~ 113 (171)
+|+++-+..+
T Consensus 82 fVl~gnP~rp 91 (225)
T PF08237_consen 82 FVLIGNPRRP 91 (225)
T ss_pred EEEecCCCCC
Confidence 6666655433
No 203
>PLN02310 triacylglycerol lipase
Probab=95.92 E-value=0.032 Score=43.85 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcC---CCCcEEEEEeChhHHHHHHHHHhC
Q 030815 61 YNEPLLEILASLS---ADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 61 ~~~~~~~~i~~~~---~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
..+.+.++++... ...+|++.|||+||.+|..++...
T Consensus 191 Vl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~dl 230 (405)
T PLN02310 191 VMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYEA 230 (405)
T ss_pred HHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHHH
Confidence 3444555554431 235799999999999999988643
No 204
>PLN02408 phospholipase A1
Probab=95.85 E-value=0.018 Score=44.73 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCC-CCcEEEEEeChhHHHHHHHHHhC
Q 030815 61 YNEPLLEILASLSA-DEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 61 ~~~~~~~~i~~~~~-~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
..+.+.++++...+ ..+|++.|||+||.+|..++...
T Consensus 184 Vl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl 221 (365)
T PLN02408 184 VREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDI 221 (365)
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHH
Confidence 34555555555522 23699999999999999998754
No 205
>PLN02209 serine carboxypeptidase
Probab=95.84 E-value=0.07 Score=42.69 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=64.0
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHH----------------HHHh------CCCeEEEecC-CCCCCCCcccc-ccccHHH
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKP----------------QLEA------AGHRVTALDL-TASGIDMKKIQ-DVHSFYE 60 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~----------------~l~~------~g~~v~~~d~-~g~g~s~~~~~-~~~~~~~ 60 (171)
.+.|.++++-|..+.+..+-.+.| .+.. +-..++-+|. .|.|.|-.... ...+-++
T Consensus 66 ~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPvGtGfSy~~~~~~~~~~~~ 145 (437)
T PLN02209 66 QEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANIIFLDQPVGSGFSYSKTPIERTSDTS 145 (437)
T ss_pred CCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCcEEEecCCCCCCccCCCCCCCccCCHH
Confidence 357999999999876654422211 1100 0144667784 47777743221 1122233
Q ss_pred hHHHHHHHHHhc------CCCCcEEEEEeChhHHHHHHHHHh----C------CcceeEEEEeccccCC
Q 030815 61 YNEPLLEILASL------SADEKVVIVGHSLGGLSLALAAEK----F------PHKISVAIFLTAFMPD 113 (171)
Q Consensus 61 ~~~~~~~~i~~~------~~~~~~~lvG~S~Gg~~a~~~~~~----~------~~~~~~~v~~~~~~~~ 113 (171)
.++++.++++.. ....++.|.|.|+||..+-.++.. . +-.++|+++.+++...
T Consensus 146 ~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~igng~td~ 214 (437)
T PLN02209 146 EVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYVLGNPITHI 214 (437)
T ss_pred HHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEEecCcccCh
Confidence 456666666553 235689999999999855555543 2 1257899888887643
No 206
>PLN02934 triacylglycerol lipase
Probab=95.74 E-value=0.019 Score=46.19 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHH
Q 030815 60 EYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAE 95 (171)
Q Consensus 60 ~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~ 95 (171)
+....+.++++.. +..++++.|||+||.+|..++.
T Consensus 306 ~v~~~lk~ll~~~-p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 306 AVRSKLKSLLKEH-KNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHC-CCCeEEEeccccHHHHHHHHHH
Confidence 3445555666655 6779999999999999999974
No 207
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=95.73 E-value=0.063 Score=44.14 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=64.7
Q ss_pred CCCeEEEEcCCC---CCchhHHhhHHHHHhCCC--eEEEecCCCC-CCCCccccccccHHHhHHHHHHHHHhc-------
Q 030815 6 KQKHFVLVHGSN---HGAWCWYKVKPQLEAAGH--RVTALDLTAS-GIDMKKIQDVHSFYEYNEPLLEILASL------- 72 (171)
Q Consensus 6 ~~~~vv~lHG~~---~~~~~~~~~~~~l~~~g~--~v~~~d~~g~-g~s~~~~~~~~~~~~~~~~~~~~i~~~------- 72 (171)
..|.+|++||.. ...+.+..|.+.+.-.|. .+-.+|++.- |. .++.+.++.+..+.+..
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG--------~nI~h~ae~~vSf~r~kvlei~ge 246 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGG--------ANIKHAAEYSVSFDRYKVLEITGE 246 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCC--------cchHHHHHHHHHHhhhhhhhhhcc
Confidence 357899999987 223333455555544443 3445565531 11 24555555555555522
Q ss_pred CCCCcEEEEEeChhHHHHHHHHHhCC-cceeEEEEeccccCCCCC
Q 030815 73 SADEKVVIVGHSLGGLSLALAAEKFP-HKISVAIFLTAFMPDTKH 116 (171)
Q Consensus 73 ~~~~~~~lvG~S~Gg~~a~~~~~~~~-~~~~~~v~~~~~~~~~~~ 116 (171)
....+|+|+|.|||+.++++..-... ..|+++|+++-+....+.
T Consensus 247 fpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdg 291 (784)
T KOG3253|consen 247 FPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDG 291 (784)
T ss_pred CCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCc
Confidence 36779999999999988888865543 349999999977654433
No 208
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=95.70 E-value=0.066 Score=43.02 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHH---hCC---------------CeEEEec-CCCCCCCCc-cccccccHHHhHHHH
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLE---AAG---------------HRVTALD-LTASGIDMK-KIQDVHSFYEYNEPL 65 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~---~~g---------------~~v~~~d-~~g~g~s~~-~~~~~~~~~~~~~~~ 65 (171)
+.|.++++.|..|.+..+-.+.+.=- ..+ -.++-+| --|.|.|.. ......+.....+|+
T Consensus 100 ~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~adLvFiDqPvGTGfS~a~~~e~~~d~~~~~~D~ 179 (498)
T COG2939 100 NRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFADLVFIDQPVGTGFSRALGDEKKKDFEGAGKDV 179 (498)
T ss_pred CCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccCCceEEEecCcccCcccccccccccchhccchhH
Confidence 57899999999888776644432100 001 2356667 446676653 111122333333333
Q ss_pred HHHHHhc--------CCCCcEEEEEeChhHHHHHHHHHhCCc---ceeEEEEeccccCCCC
Q 030815 66 LEILASL--------SADEKVVIVGHSLGGLSLALAAEKFPH---KISVAIFLTAFMPDTK 115 (171)
Q Consensus 66 ~~~i~~~--------~~~~~~~lvG~S~Gg~~a~~~~~~~~~---~~~~~v~~~~~~~~~~ 115 (171)
..+++.. +...+.+|+|-|+||.-+..+|....+ ...++|.+++.....+
T Consensus 180 ~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvligng 240 (498)
T COG2939 180 YSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVLIGNG 240 (498)
T ss_pred HHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeeeecCC
Confidence 3333322 234589999999999988888776544 3678888887776665
No 209
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=95.66 E-value=0.072 Score=42.58 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=62.5
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHH----------------HHHh------CCCeEEEec-CCCCCCCCcccccc-ccHHH
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKP----------------QLEA------AGHRVTALD-LTASGIDMKKIQDV-HSFYE 60 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~----------------~l~~------~g~~v~~~d-~~g~g~s~~~~~~~-~~~~~ 60 (171)
.+.|.|+++-|..+.+..+-.+.| .+.. +-..++-+| -.|.|.|....... .+-.+
T Consensus 64 ~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPvGtGfSy~~~~~~~~~d~~ 143 (433)
T PLN03016 64 KEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANIIFLDQPVGSGFSYSKTPIDKTGDIS 143 (433)
T ss_pred ccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCcEEEecCCCCCCccCCCCCCCccCCHH
Confidence 357899999999776653211111 1110 014567778 44778774332111 11122
Q ss_pred hHHHHHHHHHhc------CCCCcEEEEEeChhHHHHHHHHHhC----------CcceeEEEEeccccCC
Q 030815 61 YNEPLLEILASL------SADEKVVIVGHSLGGLSLALAAEKF----------PHKISVAIFLTAFMPD 113 (171)
Q Consensus 61 ~~~~~~~~i~~~------~~~~~~~lvG~S~Gg~~a~~~~~~~----------~~~~~~~v~~~~~~~~ 113 (171)
.++++..+++.. ....++.|.|.|+||..+-.+|.+. +-.++|+++-.|+..+
T Consensus 144 ~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t~~ 212 (433)
T PLN03016 144 EVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYM 212 (433)
T ss_pred HHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCCcCc
Confidence 335555555443 1457899999999998666555432 2258899888876643
No 210
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.038 Score=45.19 Aligned_cols=56 Identities=30% Similarity=0.382 Sum_probs=39.4
Q ss_pred cHHHhHHHHHHHHHhc--CCCCcEEEEEeChhHHHHHHHHHhC-----C------cceeEEEEeccccC
Q 030815 57 SFYEYNEPLLEILASL--SADEKVVIVGHSLGGLSLALAAEKF-----P------HKISVAIFLTAFMP 112 (171)
Q Consensus 57 ~~~~~~~~~~~~i~~~--~~~~~~~lvG~S~Gg~~a~~~~~~~-----~------~~~~~~v~~~~~~~ 112 (171)
+.......+.+.++.. .+.++|+.+||||||.++-.++..- | .+..|+|+++.+-.
T Consensus 505 sl~~Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~PHr 573 (697)
T KOG2029|consen 505 SLAARSNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVPHR 573 (697)
T ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecCCC
Confidence 4555555566655554 4578999999999999887775532 2 34789999997643
No 211
>PLN02324 triacylglycerol lipase
Probab=95.54 E-value=0.027 Score=44.32 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCC-CCcEEEEEeChhHHHHHHHHHh
Q 030815 61 YNEPLLEILASLSA-DEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 61 ~~~~~~~~i~~~~~-~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
..+.+.++++...+ ..+|++.|||+||.+|..+|..
T Consensus 199 Vl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 199 VQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 34455566665522 2469999999999999998864
No 212
>PLN03037 lipase class 3 family protein; Provisional
Probab=95.31 E-value=0.034 Score=44.92 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=26.5
Q ss_pred HhHHHHHHHHHhcC---CCCcEEEEEeChhHHHHHHHHHh
Q 030815 60 EYNEPLLEILASLS---ADEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 60 ~~~~~~~~~i~~~~---~~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
+..+++.++++... ...++++.|||+||.+|...|..
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 34455666665542 23479999999999999998854
No 213
>PLN02802 triacylglycerol lipase
Probab=95.30 E-value=0.04 Score=44.40 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCC-CCcEEEEEeChhHHHHHHHHHhC
Q 030815 62 NEPLLEILASLSA-DEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 62 ~~~~~~~i~~~~~-~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
.+.+.++++...+ ..+|++.|||+||.+|..++...
T Consensus 315 l~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~dL 351 (509)
T PLN02802 315 VGEVRRLMEKYKGEELSITVTGHSLGAALALLVADEL 351 (509)
T ss_pred HHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHHH
Confidence 4445555554422 24799999999999999987754
No 214
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=95.29 E-value=0.35 Score=39.91 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=59.6
Q ss_pred eEEEEcCCCC---Cchh----HHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc----CCCCc
Q 030815 9 HFVLVHGSNH---GAWC----WYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL----SADEK 77 (171)
Q Consensus 9 ~vv~lHG~~~---~~~~----~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~ 77 (171)
.|+-.||.|- +... .+.|+..| |..|+.+||- ...+.+ .....++..-.+..+|+.. .-..+
T Consensus 398 li~HcHGGGfVAqsSkSHE~YLr~Wa~aL---~cPiiSVdYS---LAPEaP-FPRaleEv~fAYcW~inn~allG~TgEr 470 (880)
T KOG4388|consen 398 LIVHCHGGGFVAQSSKSHEPYLRSWAQAL---GCPIISVDYS---LAPEAP-FPRALEEVFFAYCWAINNCALLGSTGER 470 (880)
T ss_pred EEEEecCCceeeeccccccHHHHHHHHHh---CCCeEEeeec---cCCCCC-CCcHHHHHHHHHHHHhcCHHHhCcccce
Confidence 5788899882 2222 34455555 8999999974 222222 2235566655555566553 34679
Q ss_pred EEEEEeChhHHHHHHHHHh----CCcceeEEEEecccc
Q 030815 78 VVIVGHSLGGLSLALAAEK----FPHKISVAIFLTAFM 111 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~----~~~~~~~~v~~~~~~ 111 (171)
|+++|-|.||.+.+..+.+ .-...+|+++.-++.
T Consensus 471 iv~aGDSAGgNL~~~VaLr~i~~gvRvPDGl~laY~pt 508 (880)
T KOG4388|consen 471 IVLAGDSAGGNLCFTVALRAIAYGVRVPDGLMLAYPPT 508 (880)
T ss_pred EEEeccCCCcceeehhHHHHHHhCCCCCCceEEecChh
Confidence 9999999999865555443 333357887666554
No 215
>PLN02753 triacylglycerol lipase
Probab=95.11 E-value=0.044 Score=44.36 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhcC----CCCcEEEEEeChhHHHHHHHHHh
Q 030815 61 YNEPLLEILASLS----ADEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 61 ~~~~~~~~i~~~~----~~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
..+.+..+++... ...+|++.|||+||.+|..+|..
T Consensus 293 Vl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 293 ILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 3444455555442 14689999999999999999854
No 216
>PLN02847 triacylglycerol lipase
Probab=94.74 E-value=0.065 Score=44.07 Aligned_cols=24 Identities=50% Similarity=0.612 Sum_probs=20.3
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhC
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+.-+++++|||+||.+|..++...
T Consensus 249 PdYkLVITGHSLGGGVAALLAilL 272 (633)
T PLN02847 249 PDFKIKIVGHSLGGGTAALLTYIL 272 (633)
T ss_pred CCCeEEEeccChHHHHHHHHHHHH
Confidence 556899999999999999887653
No 217
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.035 Score=44.65 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=44.1
Q ss_pred CCCCcEEEEEeChhHHHHHHHHHhCC-----cceeEEEEeccccCCCCCChhH----HHHHHhhcCCCCCCc
Q 030815 73 SADEKVVIVGHSLGGLSLALAAEKFP-----HKISVAIFLTAFMPDTKHQPSY----VVERFFERIPSGEWL 135 (171)
Q Consensus 73 ~~~~~~~lvG~S~Gg~~a~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 135 (171)
.+.+||.|||+|+|+.+..+++.... +-|..+++++.+.+.....+.. ...+|.+.....+|.
T Consensus 444 qG~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~~k~~~w~k~r~vVsGRFVNgYs~nDW~ 515 (633)
T KOG2385|consen 444 QGNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVPTKAKLWLKARSVVSGRFVNGYSTNDWT 515 (633)
T ss_pred cCCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCccCCHHHHHHHHhheecceeeeeecchHH
Confidence 47889999999999999998776543 3388999999888755444322 234455555555553
No 218
>PLN02719 triacylglycerol lipase
Probab=94.67 E-value=0.071 Score=43.08 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcC----CCCcEEEEEeChhHHHHHHHHHhC
Q 030815 62 NEPLLEILASLS----ADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 62 ~~~~~~~i~~~~----~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
...+.++++... ...+|++.|||+||.+|..+|...
T Consensus 280 l~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~Dl 319 (518)
T PLN02719 280 LTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYDV 319 (518)
T ss_pred HHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHHH
Confidence 344444444442 124799999999999999987643
No 219
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=94.50 E-value=0.036 Score=31.82 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=12.3
Q ss_pred ccCCCeEEEEcCCCCCchhHH
Q 030815 4 AKKQKHFVLVHGSNHGAWCWY 24 (171)
Q Consensus 4 ~~~~~~vv~lHG~~~~~~~~~ 24 (171)
.+.+++|++.||+.+++..|-
T Consensus 40 ~~~k~pVll~HGL~~ss~~wv 60 (63)
T PF04083_consen 40 NKKKPPVLLQHGLLQSSDDWV 60 (63)
T ss_dssp TTT--EEEEE--TT--GGGGC
T ss_pred CCCCCcEEEECCcccChHHHH
Confidence 456899999999999998883
No 220
>PLN02761 lipase class 3 family protein
Probab=94.48 E-value=0.078 Score=42.94 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.4
Q ss_pred CcEEEEEeChhHHHHHHHHHh
Q 030815 76 EKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 76 ~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
.+|++.|||+||.+|..+|..
T Consensus 294 ~sItVTGHSLGGALAtLaA~D 314 (527)
T PLN02761 294 ISITVTGHSLGASLALVSAYD 314 (527)
T ss_pred ceEEEeccchHHHHHHHHHHH
Confidence 469999999999999988854
No 221
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=93.83 E-value=0.14 Score=39.61 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=28.9
Q ss_pred HHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 59 YEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 59 ~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
..+.+++..+++.. +.-++.+-|||+||.+|..++...
T Consensus 155 ~~~~~~~~~L~~~~-~~~~i~vTGHSLGgAlA~laa~~i 192 (336)
T KOG4569|consen 155 SGLDAELRRLIELY-PNYSIWVTGHSLGGALASLAALDL 192 (336)
T ss_pred HHHHHHHHHHHHhc-CCcEEEEecCChHHHHHHHHHHHH
Confidence 34445555556666 688999999999999999988754
No 222
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.81 E-value=0.27 Score=34.20 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=32.6
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 75 DEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
....++-|-||||..+.++.-++|+.+.++|.+++..
T Consensus 100 pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvY 136 (227)
T COG4947 100 PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVY 136 (227)
T ss_pred CCCccccccchhhhhhhhhheeChhHhhhheeeccee
Confidence 3557888999999999999999999999999998754
No 223
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=93.67 E-value=1.1 Score=28.26 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=52.4
Q ss_pred HHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChh--HHHHHHHHHhCCcc
Q 030815 23 WYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLG--GLSLALAAEKFPHK 100 (171)
Q Consensus 23 ~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~G--g~~a~~~~~~~~~~ 100 (171)
+..+.+.+...|+..=.+.++..|.+..........+.-...+..+++.. ...+++|||-|-- --+-..++.++|++
T Consensus 13 y~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~f-P~~kfiLIGDsgq~DpeiY~~ia~~~P~~ 91 (100)
T PF09949_consen 13 YPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDF-PERKFILIGDSGQHDPEIYAEIARRFPGR 91 (100)
T ss_pred HHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHC-CCCcEEEEeeCCCcCHHHHHHHHHHCCCC
Confidence 34556666666776555566655544322211112234456677777777 7899999998854 34555668899999
Q ss_pred eeEEEE
Q 030815 101 ISVAIF 106 (171)
Q Consensus 101 ~~~~v~ 106 (171)
|.++..
T Consensus 92 i~ai~I 97 (100)
T PF09949_consen 92 ILAIYI 97 (100)
T ss_pred EEEEEE
Confidence 998854
No 224
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=93.49 E-value=0.4 Score=36.75 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=48.3
Q ss_pred eEEEecCC-CCCCCCccccc-cccHHHhHHHHHHHHHhc------CCCCcEEEEEeChhHHHHHHHHHhC----------
Q 030815 36 RVTALDLT-ASGIDMKKIQD-VHSFYEYNEPLLEILASL------SADEKVVIVGHSLGGLSLALAAEKF---------- 97 (171)
Q Consensus 36 ~v~~~d~~-g~g~s~~~~~~-~~~~~~~~~~~~~~i~~~------~~~~~~~lvG~S~Gg~~a~~~~~~~---------- 97 (171)
.++-+|.| |.|.|-..... ..+-+..++++..+++.. ....++.|.|-|+||..+-.++.+.
T Consensus 3 NvLfiDqPvGvGfSy~~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~~ 82 (319)
T PLN02213 3 NIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEP 82 (319)
T ss_pred cEEEecCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhcccccCC
Confidence 57778888 77777433211 112122335555555543 2567899999999998666666532
Q ss_pred CcceeEEEEeccccCC
Q 030815 98 PHKISVAIFLTAFMPD 113 (171)
Q Consensus 98 ~~~~~~~v~~~~~~~~ 113 (171)
+-.++|+++-.|++.+
T Consensus 83 ~inLkGi~IGNg~t~~ 98 (319)
T PLN02213 83 PINLQGYMLGNPVTYM 98 (319)
T ss_pred ceeeeEEEeCCCCCCc
Confidence 1257888877777644
No 225
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=93.39 E-value=0.18 Score=37.94 Aligned_cols=45 Identities=27% Similarity=0.458 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccc
Q 030815 64 PLLEILASLSADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 64 ~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
|+...++.+.....+.+-|||+||.+|..+..++. +-.+.+.+|.
T Consensus 264 dI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg--lP~VaFesPG 308 (425)
T KOG4540|consen 264 DILGAVRRIYPDARIWLTGHSLGGAIASLLGIRFG--LPVVAFESPG 308 (425)
T ss_pred HHHHHHHHhCCCceEEEeccccchHHHHHhccccC--CceEEecCch
Confidence 34444445557889999999999999999988765 3444455543
No 226
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=93.39 E-value=0.18 Score=37.94 Aligned_cols=45 Identities=27% Similarity=0.458 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccc
Q 030815 64 PLLEILASLSADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 64 ~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
|+...++.+.....+.+-|||+||.+|..+..++. +-.+.+.+|.
T Consensus 264 dI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg--lP~VaFesPG 308 (425)
T COG5153 264 DILGAVRRIYPDARIWLTGHSLGGAIASLLGIRFG--LPVVAFESPG 308 (425)
T ss_pred HHHHHHHHhCCCceEEEeccccchHHHHHhccccC--CceEEecCch
Confidence 34444445557889999999999999999988765 3444455543
No 227
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=93.14 E-value=0.27 Score=38.85 Aligned_cols=105 Identities=11% Similarity=0.078 Sum_probs=75.5
Q ss_pred cCCCeEEEEcCCCCCchhH-HhhHHHHHhCCCeEEEecCCCCCCCCccc--cccccHHHhHHHHHHHHHhc--CCCCcEE
Q 030815 5 KKQKHFVLVHGSNHGAWCW-YKVKPQLEAAGHRVTALDLTASGIDMKKI--QDVHSFYEYNEPLLEILASL--SADEKVV 79 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~-~~~~~~l~~~g~~v~~~d~~g~g~s~~~~--~~~~~~~~~~~~~~~~i~~~--~~~~~~~ 79 (171)
...|.|++.-|++.+.... ......| +-+-+.+.+|.++.|...+ ....++.+-+.|...+++.+ --..+.+
T Consensus 61 ~drPtV~~T~GY~~~~~p~r~Ept~Ll---d~NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~iY~~kWI 137 (448)
T PF05576_consen 61 FDRPTVLYTEGYNVSTSPRRSEPTQLL---DGNQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPIYPGKWI 137 (448)
T ss_pred CCCCeEEEecCcccccCccccchhHhh---ccceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHhhccCCce
Confidence 3568888889988654333 3444444 3456778999999886543 23457777788777666555 1356799
Q ss_pred EEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 80 IVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 80 lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
--|-|-||+.++..=.-+|+-|++.|.--.+..
T Consensus 138 STG~SKGGmTa~y~rrFyP~DVD~tVaYVAP~~ 170 (448)
T PF05576_consen 138 STGGSKGGMTAVYYRRFYPDDVDGTVAYVAPND 170 (448)
T ss_pred ecCcCCCceeEEEEeeeCCCCCCeeeeeecccc
Confidence 999999999999988889999999987665543
No 228
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.54 E-value=0.2 Score=37.24 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=50.5
Q ss_pred hHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHH--------HHHHHHhc-----CCCCcEEEEEeChhHHHHHH
Q 030815 26 VKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEP--------LLEILASL-----SADEKVVIVGHSLGGLSLAL 92 (171)
Q Consensus 26 ~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~--------~~~~i~~~-----~~~~~~~lvG~S~Gg~~a~~ 92 (171)
+..-+..++...+.++-|.+|...........++ .+.| +.+..... .+..+..++|.||||.+|..
T Consensus 133 L~~p~~k~~i~tmvle~pfYgqr~p~~q~~~~Le-~vtDlf~mG~A~I~E~~~lf~Ws~~~g~g~~~~~g~Smgg~~a~~ 211 (371)
T KOG1551|consen 133 LSKPINKREIATMVLEKPFYGQRVPEEQIIHMLE-YVTDLFKMGRATIQEFVKLFTWSSADGLGNLNLVGRSMGGDIANQ 211 (371)
T ss_pred ecCchhhhcchheeeecccccccCCHHHHHHHHH-HHHHHHHhhHHHHHHHHHhcccccccCcccceeeeeecccHHHHh
Confidence 4445556678888999998887655442221222 1122 11222222 25678999999999999999
Q ss_pred HHHhCCcceeEEEEec
Q 030815 93 AAEKFPHKISVAIFLT 108 (171)
Q Consensus 93 ~~~~~~~~~~~~v~~~ 108 (171)
+...++..|+-+=+++
T Consensus 212 vgS~~q~Pva~~p~l~ 227 (371)
T KOG1551|consen 212 VGSLHQKPVATAPCLN 227 (371)
T ss_pred hcccCCCCcccccccc
Confidence 9987766554433333
No 229
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=91.44 E-value=0.42 Score=38.74 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=35.7
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEeccccC
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~~ 112 (171)
....-...|-|.||.-++..|+++|+.++||+.-+|...
T Consensus 113 ~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 113 APKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred CCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHH
Confidence 566789999999999999999999999999999988764
No 230
>PRK12467 peptide synthase; Provisional
Probab=91.38 E-value=1.9 Score=43.82 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=69.7
Q ss_pred CeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhH
Q 030815 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGG 87 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg 87 (171)
+.+++.|...+....+..+...+.. +..++.+..++.-.... ...+++.....+.+.+.......+..+.|+|+||
T Consensus 3693 ~~l~~~h~~~r~~~~~~~l~~~l~~-~~~~~~l~~~~~~~d~~---~~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g~ 3768 (3956)
T PRK12467 3693 PALFCRHEGLGTVFDYEPLAVILEG-DRHVLGLTCRHLLDDGW---QDTSLQAMAVQYADYILWQQAKGPYGLLGWSLGG 3768 (3956)
T ss_pred cceeeechhhcchhhhHHHHHHhCC-CCcEEEEeccccccccC---CccchHHHHHHHHHHHHHhccCCCeeeeeeecch
Confidence 4599999998887778888877755 47777776655432222 1236777888888888777666789999999999
Q ss_pred HHHHHHHHhC---CcceeEEEEecc
Q 030815 88 LSLALAAEKF---PHKISVAIFLTA 109 (171)
Q Consensus 88 ~~a~~~~~~~---~~~~~~~v~~~~ 109 (171)
.++..++... .+.+.-+.++..
T Consensus 3769 ~~a~~~~~~l~~~g~~~~~~~~~~~ 3793 (3956)
T PRK12467 3769 TLARLVAELLEREGESEAFLGLFDN 3793 (3956)
T ss_pred HHHHHHHHHHHHcCCceeEEEEEec
Confidence 9999887653 444554444443
No 231
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=91.27 E-value=4.4 Score=29.46 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=62.2
Q ss_pred eEEEEcCCCCCch-hHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCC--CcEEEEEeCh
Q 030815 9 HFVLVHGSNHGAW-CWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSAD--EKVVIVGHSL 85 (171)
Q Consensus 9 ~vv~lHG~~~~~~-~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~lvG~S~ 85 (171)
|+|++=|+.+... ......+...+.|++++.+-.+........ ..+...++.+.+.+...... .++.+-..|.
T Consensus 1 plvvl~gW~gA~~~hl~KY~~~Y~~~g~~il~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~il~H~FSn 76 (240)
T PF05705_consen 1 PLVVLLGWMGAKPKHLAKYSDLYQDPGFDILLVTSPPADFFWPS----KRLAPAADKLLELLSDSQSASPPPILFHSFSN 76 (240)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEeCCHHHHeeec----cchHHHHHHHHHHhhhhccCCCCCEEEEEEEC
Confidence 4667777765544 345556666667999998865422111111 25566666666666665222 3899999999
Q ss_pred hHHHHHHHHHh-C---------CcceeEEEEeccccCCC
Q 030815 86 GGLSLALAAEK-F---------PHKISVAIFLTAFMPDT 114 (171)
Q Consensus 86 Gg~~a~~~~~~-~---------~~~~~~~v~~~~~~~~~ 114 (171)
||......... + -.+++++|+-+++....
T Consensus 77 GG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~ 115 (240)
T PF05705_consen 77 GGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPT 115 (240)
T ss_pred chHHHHHHHHHHHHhcccccccccccceeEEeCCCCccc
Confidence 87766655441 1 12388999888765443
No 232
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=1.5 Score=33.75 Aligned_cols=111 Identities=12% Similarity=0.097 Sum_probs=70.0
Q ss_pred cCCCeEEEEcCCCCCchh-HHhhHHHHHh-------------CCCeEEEecCC-CCCCCCc--cccccccHHHhHHHHHH
Q 030815 5 KKQKHFVLVHGSNHGAWC-WYKVKPQLEA-------------AGHRVTALDLT-ASGIDMK--KIQDVHSFYEYNEPLLE 67 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~-~~~~~~~l~~-------------~g~~v~~~d~~-g~g~s~~--~~~~~~~~~~~~~~~~~ 67 (171)
...|..+.+.|..+.+.. +-.+ |++.. +.-.++-+|-| |.|.|-- ......+.++.+.|+.+
T Consensus 29 s~~pl~lwlqGgpGaSstG~GNF-eE~GPl~~~~~~r~~TWlk~adllfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl~~ 107 (414)
T KOG1283|consen 29 SERPLALWLQGGPGASSTGFGNF-EELGPLDLDGSPRDWTWLKDADLLFVDNPVGAGFSYVDGSSAYTTNNKQIALDLVE 107 (414)
T ss_pred cCCCeeEEecCCCCCCCcCccch-hhcCCcccCCCcCCchhhhhccEEEecCCCcCceeeecCcccccccHHHHHHHHHH
Confidence 457889999998654432 2111 11111 01345555654 6665532 22123367778888888
Q ss_pred HHHhc------CCCCcEEEEEeChhHHHHHHHHHhC---------CcceeEEEEeccccCCCCC
Q 030815 68 ILASL------SADEKVVIVGHSLGGLSLALAAEKF---------PHKISVAIFLTAFMPDTKH 116 (171)
Q Consensus 68 ~i~~~------~~~~~~~lvG~S~Gg~~a~~~~~~~---------~~~~~~~v~~~~~~~~~~~ 116 (171)
.++.+ ....|.+|+..|+||-++..++... ..++.++++=++++.+...
T Consensus 108 llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP~D~ 171 (414)
T KOG1283|consen 108 LLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISPEDF 171 (414)
T ss_pred HHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccChhHh
Confidence 88876 2566899999999999999988754 2347788877777765543
No 233
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=91.00 E-value=1.8 Score=34.90 Aligned_cols=107 Identities=11% Similarity=0.042 Sum_probs=59.8
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHh-----CC-------------CeEEEecCC-CCCCCCcccc--ccccHHHhHH
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEA-----AG-------------HRVTALDLT-ASGIDMKKIQ--DVHSFYEYNE 63 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~-----~g-------------~~v~~~d~~-g~g~s~~~~~--~~~~~~~~~~ 63 (171)
..+|.||+|-|..|-+..- .+..++.. .| ..++-+|.| |.|.|-.... ...+-+..++
T Consensus 71 ~~dPlvLWLnGGPGCSSl~-G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGFSYs~~~~~~~~~D~~~A~ 149 (454)
T KOG1282|consen 71 ETDPLVLWLNGGPGCSSLG-GLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGFSYSNTSSDYKTGDDGTAK 149 (454)
T ss_pred CCCCEEEEeCCCCCccchh-hhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCccccCCCCcCcCCcHHHHH
Confidence 3578999999987655432 33333321 11 235555655 5555532221 1123444455
Q ss_pred HHHHHHHhc------CCCCcEEEEEeChhHHHHHHHHH----hCC------cceeEEEEeccccC
Q 030815 64 PLLEILASL------SADEKVVIVGHSLGGLSLALAAE----KFP------HKISVAIFLTAFMP 112 (171)
Q Consensus 64 ~~~~~i~~~------~~~~~~~lvG~S~Gg~~a~~~~~----~~~------~~~~~~v~~~~~~~ 112 (171)
|...++... ....++.|.|-|++|...-.+|. ... -.++|+++=.|.+.
T Consensus 150 d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg~td 214 (454)
T KOG1282|consen 150 DNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNGLTD 214 (454)
T ss_pred HHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCcccC
Confidence 555555443 36778999999999965555544 322 24777765555543
No 234
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=90.85 E-value=0.088 Score=43.22 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=62.1
Q ss_pred hHHhhHHHHHhCCCeEEEecCCCCCCCCc---c----ccccccHHHhHHHHHHHHHhc-CCCCcEEEEEeChhHHHHHHH
Q 030815 22 CWYKVKPQLEAAGHRVTALDLTASGIDMK---K----IQDVHSFYEYNEPLLEILASL-SADEKVVIVGHSLGGLSLALA 93 (171)
Q Consensus 22 ~~~~~~~~l~~~g~~v~~~d~~g~g~s~~---~----~~~~~~~~~~~~~~~~~i~~~-~~~~~~~lvG~S~Gg~~a~~~ 93 (171)
.|.......-++|...+..+.||-|.=.. . ......++|......++++.- ....++.+-|-|.||.+.-.+
T Consensus 438 ~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~a 517 (648)
T COG1505 438 RFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAA 517 (648)
T ss_pred ccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEee
Confidence 35555566677899899999998664321 1 111234455555555555443 456689999999999999988
Q ss_pred HHhCCcceeEEEEecccc
Q 030815 94 AEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~ 111 (171)
.-+.|+.+..+|+--|.+
T Consensus 518 lTQrPelfgA~v~evPll 535 (648)
T COG1505 518 LTQRPELFGAAVCEVPLL 535 (648)
T ss_pred eccChhhhCceeeccchh
Confidence 999999998888776654
No 235
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=89.81 E-value=4.7 Score=28.39 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=46.1
Q ss_pred cCCCeEEEEcCCCCCchh--HHhhHHHHHhCCCeEEEecCC--CCCCCCccccccccHHHhH---HHHHHHHHhcCCCCc
Q 030815 5 KKQKHFVLVHGSNHGAWC--WYKVKPQLEAAGHRVTALDLT--ASGIDMKKIQDVHSFYEYN---EPLLEILASLSADEK 77 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~--g~g~s~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~ 77 (171)
+.++.+|++-|+.++..+ -..+.+.|.+.|+.++..|=- =||.+..-. ++.++-. +.+.+..+.+.+..-
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg---Fs~edR~eniRRvaevAkll~daG~ 96 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG---FSREDRIENIRRVAEVAKLLADAGL 96 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC---CChHHHHHHHHHHHHHHHHHHHCCe
Confidence 456789999999877654 356788888999999999721 134332222 2333333 333444444445566
Q ss_pred EEEEE
Q 030815 78 VVIVG 82 (171)
Q Consensus 78 ~~lvG 82 (171)
++|+.
T Consensus 97 iviva 101 (197)
T COG0529 97 IVIVA 101 (197)
T ss_pred EEEEE
Confidence 66664
No 236
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=88.93 E-value=5.9 Score=31.17 Aligned_cols=85 Identities=15% Similarity=0.238 Sum_probs=57.1
Q ss_pred CCeEEEEcCCCCCc-------hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEE
Q 030815 7 QKHFVLVHGSNHGA-------WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVV 79 (171)
Q Consensus 7 ~~~vv~lHG~~~~~-------~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 79 (171)
..-||+|||..+++ ++|+.+++.+.++|. +-.+|....|.. ..+++.+.-+..++... .+ .
T Consensus 171 ~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~l-ip~~D~AYQGF~-------~GleeDa~~lR~~a~~~---~~-~ 238 (396)
T COG1448 171 EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGL-IPFFDIAYQGFA-------DGLEEDAYALRLFAEVG---PE-L 238 (396)
T ss_pred CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeeeehhhhhhc-------cchHHHHHHHHHHHHhC---Cc-E
Confidence 34599999988654 579999999998866 334454433321 24777777777777765 22 7
Q ss_pred EEEeChhHHHHHHHHHhCCcceeEEEEec
Q 030815 80 IVGHSLGGLSLALAAEKFPHKISVAIFLT 108 (171)
Q Consensus 80 lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~ 108 (171)
+|..|+--.+.+ |.+|+.++.+++
T Consensus 239 lva~S~SKnfgL-----YgERVGa~~vva 262 (396)
T COG1448 239 LVASSFSKNFGL-----YGERVGALSVVA 262 (396)
T ss_pred EEEehhhhhhhh-----hhhccceeEEEe
Confidence 777777655443 457788877775
No 237
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=88.68 E-value=9.2 Score=29.27 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCCC-chhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh
Q 030815 7 QKHFVLVHGSNHG-AWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSL 85 (171)
Q Consensus 7 ~~~vv~lHG~~~~-~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~ 85 (171)
.|.|+++-.+.++ +.-.+.-.+.|-.. ..|+..||-.....+... ....+.++.+-+.+.|..+... +++++-+.
T Consensus 103 dPkvLivapmsGH~aTLLR~TV~alLp~-~~vyitDW~dAr~Vp~~~-G~FdldDYIdyvie~~~~~Gp~--~hv~aVCQ 178 (415)
T COG4553 103 DPKVLIVAPMSGHYATLLRGTVEALLPY-HDVYITDWVDARMVPLEA-GHFDLDDYIDYVIEMINFLGPD--AHVMAVCQ 178 (415)
T ss_pred CCeEEEEecccccHHHHHHHHHHHhccc-cceeEeeccccceeeccc-CCccHHHHHHHHHHHHHHhCCC--CcEEEEec
Confidence 4567777666554 45567778888775 889999987543332222 3358999999999999999433 55555554
Q ss_pred hHH-----HHHHHHHhCCcceeEEEEeccccCCCCCC
Q 030815 86 GGL-----SLALAAEKFPHKISVAIFLTAFMPDTKHQ 117 (171)
Q Consensus 86 Gg~-----~a~~~~~~~~~~~~~~v~~~~~~~~~~~~ 117 (171)
=+. +++..+...|.....++++++++....++
T Consensus 179 P~vPvLAAisLM~~~~~p~~PssMtlmGgPIDaR~nP 215 (415)
T COG4553 179 PTVPVLAAISLMEEDGDPNVPSSMTLMGGPIDARKNP 215 (415)
T ss_pred CCchHHHHHHHHHhcCCCCCCceeeeecCccccccCc
Confidence 433 33333444577889999999998766555
No 238
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.53 E-value=4.5 Score=31.52 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=66.2
Q ss_pred eEEEEcCCCCCchhH-HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcC-CCCcEEEEEeChh
Q 030815 9 HFVLVHGSNHGAWCW-YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLS-ADEKVVIVGHSLG 86 (171)
Q Consensus 9 ~vv~lHG~~~~~~~~-~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~lvG~S~G 86 (171)
+|+.+=|+.+..+.| ........+.|+.++.+-.|-+-..........+.....+.+...+.... +..++++--.|+|
T Consensus 40 ~Iv~~~gWag~~~r~l~ky~~~Yq~~g~~~~~~tap~~~~~~~~s~~~~sl~~~~~~l~~L~~~~~~~~~pi~fh~FS~n 119 (350)
T KOG2521|consen 40 PIVVLLGWAGAIDRNLMKYSKIYQDKGYIVVRITAPCPSVFLSASRRILSLSLASTRLSELLSDYNSDPCPIIFHVFSGN 119 (350)
T ss_pred cEEEEeeeccccchhHHHHHHHHhcCCceEEEecCcccccccccccccchhhHHHHHHHHHhhhccCCcCceEEEEecCC
Confidence 566666666665554 44555666779999988777665544443344456666677777776663 5667888899999
Q ss_pred HHHHHHHH----HhC-C---cceeEEEEeccccC
Q 030815 87 GLSLALAA----EKF-P---HKISVAIFLTAFMP 112 (171)
Q Consensus 87 g~~a~~~~----~~~-~---~~~~~~v~~~~~~~ 112 (171)
|...+... .++ | +...++++.+.+..
T Consensus 120 g~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~ 153 (350)
T KOG2521|consen 120 GVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPAR 153 (350)
T ss_pred ceeehHHHHHHHhhcCchhHhhcCCceEeccccc
Confidence 87655543 122 2 34666777776554
No 239
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=85.84 E-value=12 Score=28.05 Aligned_cols=91 Identities=10% Similarity=0.138 Sum_probs=52.8
Q ss_pred CCeEEEEcCCCCCchh------HHhhHHHH-HhCCCeEEEecCCCCCCC--------Cccc----cc--cccHHHhHHH-
Q 030815 7 QKHFVLVHGSNHGAWC------WYKVKPQL-EAAGHRVTALDLTASGID--------MKKI----QD--VHSFYEYNEP- 64 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~------~~~~~~~l-~~~g~~v~~~d~~g~g~s--------~~~~----~~--~~~~~~~~~~- 64 (171)
+..|||+-|.+.+... -..+.+.+ ...+-..+.+-.+|.|-. .... .. ...+++.+.+
T Consensus 1 k~iv~~fDGT~n~~~~~~~~TNV~rL~~~~~~~~~~~q~~~Y~~GvGt~~~~~~~~~~~~~~~~~~~a~g~g~~~~I~~a 80 (277)
T PF09994_consen 1 KRIVVFFDGTGNNPDNDPPPTNVARLYDAYKDRDGERQIVYYIPGVGTEFGSEFGESGRALDRLLGGAFGWGIEARIRDA 80 (277)
T ss_pred CcEEEEecCCCCCCCCCccccHHHHHHHHhhccCCCceeEEEecccccccccccccccchhhhccCchhhcchHHHHHHH
Confidence 3578999998754332 23455555 222335555666777761 1100 00 0133333333
Q ss_pred HHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 65 LLEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 65 ~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+..+.+......+|.++|.|-|+..|..++...
T Consensus 81 y~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~i 113 (277)
T PF09994_consen 81 YRFLSKNYEPGDRIYLFGFSRGAYTARAFANMI 113 (277)
T ss_pred HHHHHhccCCcceEEEEecCccHHHHHHHHHHH
Confidence 333335556778899999999999999998653
No 240
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=84.04 E-value=7.3 Score=31.74 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEe-cCCCCCCCCccccccccHH-HhHHHHHHHHHhc-CCCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTAL-DLTASGIDMKKIQDVHSFY-EYNEPLLEILASL-SADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~-d~~g~g~s~~~~~~~~~~~-~~~~~~~~~i~~~-~~~~~~~lvG 82 (171)
++|..|++-|+-. ++-++. .-.+++.|...+.+ |.|=-|.+-..-.. ..+ ...+.+.+.++.+ -+...++|-|
T Consensus 288 KPPL~VYFSGyR~-aEGFEg-y~MMk~Lg~PfLL~~DpRleGGaFYlGs~--eyE~~I~~~I~~~L~~LgF~~~qLILSG 363 (511)
T TIGR03712 288 KPPLNVYFSGYRP-AEGFEG-YFMMKRLGAPFLLIGDPRLEGGAFYLGSD--EYEQGIINVIQEKLDYLGFDHDQLILSG 363 (511)
T ss_pred CCCeEEeeccCcc-cCcchh-HHHHHhcCCCeEEeeccccccceeeeCcH--HHHHHHHHHHHHHHHHhCCCHHHeeecc
Confidence 4566788888643 222221 11223335544444 66655554221111 222 2344555666666 3566799999
Q ss_pred eChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 83 HSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
-|||..-|++++.+.. .+++|+--|..
T Consensus 364 lSMGTfgAlYYga~l~--P~AIiVgKPL~ 390 (511)
T TIGR03712 364 LSMGTFGALYYGAKLS--PHAIIVGKPLV 390 (511)
T ss_pred ccccchhhhhhcccCC--CceEEEcCccc
Confidence 9999999999998864 35665544443
No 241
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=83.54 E-value=5.6 Score=26.23 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=24.1
Q ss_pred ccCCCeEEEEcCCCCCchhH--HhhHHHHHhCCC
Q 030815 4 AKKQKHFVLVHGSNHGAWCW--YKVKPQLEAAGH 35 (171)
Q Consensus 4 ~~~~~~vv~lHG~~~~~~~~--~~~~~~l~~~g~ 35 (171)
.+++|.|+-+||..|....+ +-+++.|-..|.
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~ 82 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGM 82 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhccc
Confidence 46788999999999888776 457777666553
No 242
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=81.43 E-value=6.2 Score=27.88 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=39.7
Q ss_pred CCCeEEEEcCCCCCc---hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc
Q 030815 6 KQKHFVLVHGSNHGA---WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL 72 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~---~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~ 72 (171)
.++|++++||..+.. ..-..+.+.|.+.|..+...-+++.|...... ....++.+.+.+++++.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~---~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNP---ENRRDWYERILDFFDKY 209 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSH---HHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCc---hhHHHHHHHHHHHHHHH
Confidence 478999999987653 34456888888888877666666544422111 12335566666666543
No 243
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=79.43 E-value=15 Score=26.17 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=46.4
Q ss_pred HHHHhCCC-eEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh----hHHHHHHHHHhCC-cce
Q 030815 28 PQLEAAGH-RVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSL----GGLSLALAAEKFP-HKI 101 (171)
Q Consensus 28 ~~l~~~g~-~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~----Gg~~a~~~~~~~~-~~~ 101 (171)
+.+...|. +|+..+.+.. ..++.+.+++.+.+.++.. + ..++|+|+|. |..++-.++.++. ..+
T Consensus 70 ~~l~~~G~d~V~~~~~~~~--------~~~~~e~~a~al~~~i~~~-~-p~lVL~~~t~~~~~grdlaprlAarLga~lv 139 (202)
T cd01714 70 REALAMGADRAILVSDRAF--------AGADTLATAKALAAAIKKI-G-VDLILTGKQSIDGDTGQVGPLLAELLGWPQI 139 (202)
T ss_pred HHHHHcCCCEEEEEecccc--------cCCChHHHHHHHHHHHHHh-C-CCEEEEcCCcccCCcCcHHHHHHHHhCCCcc
Confidence 33444455 5666654432 2246788888888888877 3 6799999998 7889999988764 234
Q ss_pred eEEEEe
Q 030815 102 SVAIFL 107 (171)
Q Consensus 102 ~~~v~~ 107 (171)
..++-+
T Consensus 140 sdv~~l 145 (202)
T cd01714 140 TYVSKI 145 (202)
T ss_pred ceEEEE
Confidence 444433
No 244
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.35 E-value=2.3 Score=29.43 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=60.2
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCe-EEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHR-VTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSL 85 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~-v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~ 85 (171)
...||++-|++..++....++ ....+. ++++|++..... ..+ + ..+.+.+|++||
T Consensus 11 d~LIvyFaGwgtpps~v~HLi---lpeN~dl~lcYDY~dl~ld-------fDf--------s------Ay~hirlvAwSM 66 (214)
T COG2830 11 DHLIVYFAGWGTPPSAVNHLI---LPENHDLLLCYDYQDLNLD-------FDF--------S------AYRHIRLVAWSM 66 (214)
T ss_pred CEEEEEEecCCCCHHHHhhcc---CCCCCcEEEEeehhhcCcc-------cch--------h------hhhhhhhhhhhH
Confidence 457888888888887554432 233454 556777632210 000 1 124567899999
Q ss_pred hHHHHHHHHHhCCcceeEEEEeccccCCCCC---ChhHHHHHHhhcCCCCCCc
Q 030815 86 GGLSLALAAEKFPHKISVAIFLTAFMPDTKH---QPSYVVERFFERIPSGEWL 135 (171)
Q Consensus 86 Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 135 (171)
|-++|-+++...+ ++..+.+.+...+... .+..++....+.+.....+
T Consensus 67 GVwvAeR~lqg~~--lksatAiNGTgLpcDds~GIp~AIF~gTL~nl~e~nr~ 117 (214)
T COG2830 67 GVWVAERVLQGIR--LKSATAINGTGLPCDDSFGIPPAIFKGTLENLTENNRL 117 (214)
T ss_pred HHHHHHHHHhhcc--ccceeeecCCCCCccccCCCCHHHHHHHHhccchhhHH
Confidence 9999999988755 5666666654433322 2444555555544444433
No 245
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.62 E-value=7.3 Score=29.41 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=37.2
Q ss_pred HHHhHHHHHHHHHhc--CCCCcEEEEEeChhHHHHHHH---HHhCCcceeEEEEeccccC
Q 030815 58 FYEYNEPLLEILASL--SADEKVVIVGHSLGGLSLALA---AEKFPHKISVAIFLTAFMP 112 (171)
Q Consensus 58 ~~~~~~~~~~~i~~~--~~~~~~~lvG~S~Gg~~a~~~---~~~~~~~~~~~v~~~~~~~ 112 (171)
-..+.+.+.+.+..+ ....++++.|.|+|++-+..+ +....+++.|.++.+|+..
T Consensus 89 ~~aL~~aV~~~~~~lP~~~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~ 148 (289)
T PF10081_consen 89 ARALFEAVYARWSTLPEDRRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFF 148 (289)
T ss_pred HHHHHHHHHHHHHhCCcccCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCC
Confidence 344455555556666 244679999999998755554 3334567999999997653
No 246
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=74.78 E-value=42 Score=26.83 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=41.5
Q ss_pred CCeEEEEcCCCCCch---hHHhhHHHHHhCCCeEEEecCCC--CCCCCccccccccHHHhHHHHHHHHHh--cCCCCcEE
Q 030815 7 QKHFVLVHGSNHGAW---CWYKVKPQLEAAGHRVTALDLTA--SGIDMKKIQDVHSFYEYNEPLLEILAS--LSADEKVV 79 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~---~~~~~~~~l~~~g~~v~~~d~~g--~g~s~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~ 79 (171)
+.++++++.+....+ ..+.-.+.|.+.|+.++-|..-- +|..... .....++.+..+...+.. + ...++.
T Consensus 116 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~la~~~~g~g--r~~~~~~I~~~~~~~~~~~~l-~gk~vl 192 (399)
T PRK05579 116 TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLACGDVGPG--RMAEPEEIVAAAERALSPKDL-AGKRVL 192 (399)
T ss_pred CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccccCCCcCCC--CCCCHHHHHHHHHHHhhhccc-CCCEEE
Confidence 456777776543322 24555667778899988765321 2322221 234666666666666632 3 456666
Q ss_pred EEEe
Q 030815 80 IVGH 83 (171)
Q Consensus 80 lvG~ 83 (171)
+-|-
T Consensus 193 ITgG 196 (399)
T PRK05579 193 ITAG 196 (399)
T ss_pred EeCC
Confidence 6665
No 247
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=73.83 E-value=5.2 Score=29.26 Aligned_cols=37 Identities=27% Similarity=0.162 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDL 42 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~ 42 (171)
.-|.+++.||++.....-......+.+.++.++..+.
T Consensus 48 ~~p~v~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (299)
T COG1073 48 KLPAVVFLHGFGSSKEQSLGYAVLLAEKGYRVLAGDA 84 (299)
T ss_pred cCceEEeccCccccccCcchHHHHhhhceeEEeeecc
Confidence 4577999999998877655577788777788777664
No 248
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=72.25 E-value=21 Score=24.40 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCCCchh--HHhhHHHHHhCCCeEEEec
Q 030815 7 QKHFVLVHGSNHGAWC--WYKVKPQLEAAGHRVTALD 41 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~d 41 (171)
++.+|++-|+.++..+ -..+.+.|.+.|+.++.+|
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 4679999999877654 3567778888899999996
No 249
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=71.38 E-value=20 Score=27.08 Aligned_cols=96 Identities=18% Similarity=0.027 Sum_probs=51.2
Q ss_pred EcCCCCCchhHHhhHHHHHhCCCeEEEe------cCCCCCCCCccccccccHHHhHHHHHHHHHhc--CCCCcEEEEEeC
Q 030815 13 VHGSNHGAWCWYKVKPQLEAAGHRVTAL------DLTASGIDMKKIQDVHSFYEYNEPLLEILASL--SADEKVVIVGHS 84 (171)
Q Consensus 13 lHG~~~~~~~~~~~~~~l~~~g~~v~~~------d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~lvG~S 84 (171)
+||.-++.. .+-.+...|++|... +++|+|...+.. ...++.+++.+.++.. ...-..++-|+=
T Consensus 11 v~G~vGn~A----A~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v----~~~e~l~~~l~~l~~~~~~~~~davltGYl 82 (281)
T COG2240 11 VYGSVGNSA----AIFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIV----MPPEQLADLLNGLEAIDKLGECDAVLTGYL 82 (281)
T ss_pred eecccccHh----HHHHHHHcCCceeeeceEEecCCCCCCCCCCcC----CCHHHHHHHHHHHHhcccccccCEEEEccC
Confidence 455545444 344556668887654 688888765443 2334444444444442 233456777752
Q ss_pred h----hHHHHHHHHHhCCcceeEEEEeccccCCCCC
Q 030815 85 L----GGLSLALAAEKFPHKISVAIFLTAFMPDTKH 116 (171)
Q Consensus 85 ~----Gg~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (171)
- +-.++-.+......+.+.+++++|-+...+.
T Consensus 83 gs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gg 118 (281)
T COG2240 83 GSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGG 118 (281)
T ss_pred CCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCc
Confidence 2 2222222222223446677889998876653
No 250
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=70.45 E-value=22 Score=30.00 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCCc---hhHHhhHHHHHhCCCeEEEecCCCCCCC
Q 030815 6 KQKHFVLVHGSNHGA---WCWYKVKPQLEAAGHRVTALDLTASGID 48 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~---~~~~~~~~~l~~~g~~v~~~d~~g~g~s 48 (171)
-+.|++++||..... .+-..+.+.|...|..+-..-+|+.|.+
T Consensus 550 i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~ 595 (620)
T COG1506 550 IKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHG 595 (620)
T ss_pred cCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcC
Confidence 467899999998654 3455688888888888877777754443
No 251
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=70.17 E-value=48 Score=25.91 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=26.5
Q ss_pred EEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCC
Q 030815 10 FVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTAS 45 (171)
Q Consensus 10 vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~ 45 (171)
|+|+|...-. +|+.+++.|.+.|+.|..+-..+.
T Consensus 2 il~~~~~~p~--~~~~la~~L~~~G~~v~~~~~~~~ 35 (396)
T cd03818 2 ILFVHQNFPG--QFRHLAPALAAQGHEVVFLTEPNA 35 (396)
T ss_pred EEEECCCCch--hHHHHHHHHHHCCCEEEEEecCCC
Confidence 7899986643 378899999999999988754443
No 252
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=66.44 E-value=7.1 Score=28.87 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=16.3
Q ss_pred HHHHhcCCCCcEEEEEeChhHH
Q 030815 67 EILASLSADEKVVIVGHSLGGL 88 (171)
Q Consensus 67 ~~i~~~~~~~~~~lvG~S~Gg~ 88 (171)
.+++.+.....|+++|||+|..
T Consensus 226 ~~~~~l~~i~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 226 SFFESLSDIDEIIIYGHSLGEV 247 (270)
T ss_pred HHHhhhcCCCEEEEEeCCCchh
Confidence 3444445668899999999965
No 253
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=66.18 E-value=27 Score=26.15 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=50.1
Q ss_pred cCCCeEEEEcCCCCCc--hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEE
Q 030815 5 KKQKHFVLVHGSNHGA--WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVG 82 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG 82 (171)
+..++||++.|+-++. ..-..+.+.+..+|++|..+.-|. .-+....-+..+-..+.....|.|.-
T Consensus 53 ~~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt------------~eE~~~p~lWRfw~~lP~~G~i~IF~ 120 (264)
T TIGR03709 53 GRRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPS------------AEELDHDFLWRIHKALPERGEIGIFN 120 (264)
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCC------------HHHHcCchHHHHHHhCCCCCeEEEEc
Confidence 3458999999997543 456788889988999999985541 22222334566777777777888887
Q ss_pred eChhHH
Q 030815 83 HSLGGL 88 (171)
Q Consensus 83 ~S~Gg~ 88 (171)
.|+=+-
T Consensus 121 RSWY~~ 126 (264)
T TIGR03709 121 RSHYED 126 (264)
T ss_pred Cccccc
Confidence 775443
No 254
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=65.60 E-value=63 Score=25.25 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=55.6
Q ss_pred cccCCCeEEEEcCCCCC--ch---hHHhhHHHHHh-CCCeEEEecCCCCCCCCccc----------cccc-----cHH-H
Q 030815 3 EAKKQKHFVLVHGSNHG--AW---CWYKVKPQLEA-AGHRVTALDLTASGIDMKKI----------QDVH-----SFY-E 60 (171)
Q Consensus 3 ~~~~~~~vv~lHG~~~~--~~---~~~~~~~~l~~-~g~~v~~~d~~g~g~s~~~~----------~~~~-----~~~-~ 60 (171)
+...+..|+|+-|.... .+ ..-.++..|.. .+.+++++--+|.|--.-.. .+.- ++. .
T Consensus 27 ~ds~k~lV~CfDGT~nrfg~qp~TNVv~Ly~sl~r~d~~~qv~yYd~GVGt~Gfdavvdvrrrl~~~~~gsmFg~gL~~n 106 (423)
T COG3673 27 EDSMKRLVFCFDGTWNRFGAQPPTNVVLLYASLQRADGVTQVIYYDEGVGTGGFDAVVDVRRRLEKLSGGSMFGQGLVQN 106 (423)
T ss_pred ccCcceEEEEecCchhhcCCCCcchHHHHHHHHhcCCCceEEEEecCCcccccchhhHHHHHhhhhhhhHHHHHHHHHHH
Confidence 34456789999986521 22 23345566654 57888888778877442110 0000 111 1
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHh
Q 030815 61 YNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 61 ~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
....+.-++.+....+.|.+.|+|-|+..+.-+|..
T Consensus 107 I~~AYrFL~~~yepGD~Iy~FGFSRGAf~aRVlagm 142 (423)
T COG3673 107 IREAYRFLIFNYEPGDEIYAFGFSRGAFSARVLAGM 142 (423)
T ss_pred HHHHHHHHHHhcCCCCeEEEeeccchhHHHHHHHHH
Confidence 122233344455678899999999999988877653
No 255
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=64.46 E-value=34 Score=21.75 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=51.1
Q ss_pred eEEEEcCCCCCchhHHhhHHHHHhC-CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhH
Q 030815 9 HFVLVHGSNHGAWCWYKVKPQLEAA-GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGG 87 (171)
Q Consensus 9 ~vv~lHG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg 87 (171)
.||.-|| .-+......++.+... -..+.++++. ...+.++..+.+.+.++.......++++.-=+||
T Consensus 2 iii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~----------~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~gg 69 (116)
T PF03610_consen 2 IIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLY----------PDESIEDFEEKLEEAIEELDEGDGVLILTDLGGG 69 (116)
T ss_dssp EEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEET----------TTSCHHHHHHHHHHHHHHCCTTSEEEEEESSTTS
T ss_pred EEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECc----------CCCCHHHHHHHHHHHHHhccCCCcEEEEeeCCCC
Confidence 4677798 4444556666776655 3466667654 2247888899999999888556778888766776
Q ss_pred HHHHHHHHh
Q 030815 88 LSLALAAEK 96 (171)
Q Consensus 88 ~~a~~~~~~ 96 (171)
-....++..
T Consensus 70 sp~n~a~~~ 78 (116)
T PF03610_consen 70 SPFNEAARL 78 (116)
T ss_dssp HHHHHHHHH
T ss_pred ccchHHHHH
Confidence 655555544
No 256
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.23 E-value=32 Score=28.29 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=56.5
Q ss_pred EEEcCCCCCchh-HHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHH
Q 030815 11 VLVHGSNHGAWC-WYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLS 89 (171)
Q Consensus 11 v~lHG~~~~~~~-~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~ 89 (171)
+|--|+|.+... -...++.-+..||.|+.+|-.|.-. +-+.+...+..+++.. ..+.|+.||.-+=|.=
T Consensus 442 lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~---------~~~~lm~~l~k~~~~~-~pd~i~~vgealvg~d 511 (587)
T KOG0781|consen 442 LFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMH---------NNAPLMTSLAKLIKVN-KPDLILFVGEALVGND 511 (587)
T ss_pred HHhhhcCCChHHHHHHHHHHHHhcCCCEEEEecccccc---------CChhHHHHHHHHHhcC-CCceEEEehhhhhCcH
Confidence 344566655443 2344555667799999999876432 3455667777777777 7888999998776665
Q ss_pred HHHHHHhC---------CcceeEEEEec
Q 030815 90 LALAAEKF---------PHKISVAIFLT 108 (171)
Q Consensus 90 a~~~~~~~---------~~~~~~~v~~~ 108 (171)
+..-+.++ |..++++++.-
T Consensus 512 sv~q~~~fn~al~~~~~~r~id~~~ltk 539 (587)
T KOG0781|consen 512 SVDQLKKFNRALADHSTPRLIDGILLTK 539 (587)
T ss_pred HHHHHHHHHHHHhcCCCccccceEEEEe
Confidence 54443322 34578887543
No 257
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=63.64 E-value=12 Score=28.13 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=21.7
Q ss_pred HHHHHhcCCCCcEEEEEeChhHHHHHHHHH
Q 030815 66 LEILASLSADEKVVIVGHSLGGLSLALAAE 95 (171)
Q Consensus 66 ~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~ 95 (171)
.+.++.. ...+..++|||+|=+.|..++.
T Consensus 67 ~~~l~~~-g~~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 67 WRALLAL-LPRPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred HHHHHhc-CCCCcEEeecCHHHHHHHHHhC
Confidence 3444555 5688999999999888877764
No 258
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=63.47 E-value=75 Score=25.33 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=41.7
Q ss_pred CeEEEEcCCCCCch---hHHhhHHHHHhCCCeEEEecCCC--CCCCCccccccccHHHhHHHHHHHHHh---cCCCCcEE
Q 030815 8 KHFVLVHGSNHGAW---CWYKVKPQLEAAGHRVTALDLTA--SGIDMKKIQDVHSFYEYNEPLLEILAS---LSADEKVV 79 (171)
Q Consensus 8 ~~vv~lHG~~~~~~---~~~~~~~~l~~~g~~v~~~d~~g--~g~s~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~ 79 (171)
.++|+++-+....+ ..+.-.+.|.+.|+.++-+..-- +|..... ...+.++..+.+.+.+.. + ...++.
T Consensus 113 ~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g~g--~~~~~~~i~~~v~~~~~~~~~~-~~~~vl 189 (390)
T TIGR00521 113 APIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEGKG--RLAEPETIVKAAEREFSPKEDL-EGKRVL 189 (390)
T ss_pred CCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccccccCC--CCCCHHHHHHHHHHHHhhcccc-CCceEE
Confidence 46777776543332 34555667777788887665221 2332221 234677777777776644 4 456666
Q ss_pred EEEe
Q 030815 80 IVGH 83 (171)
Q Consensus 80 lvG~ 83 (171)
+.|-
T Consensus 190 it~g 193 (390)
T TIGR00521 190 ITAG 193 (390)
T ss_pred EecC
Confidence 6665
No 259
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=63.34 E-value=12 Score=28.07 Aligned_cols=28 Identities=32% Similarity=0.429 Sum_probs=21.3
Q ss_pred HHHHhcCCCCcEEEEEeChhHHHHHHHHH
Q 030815 67 EILASLSADEKVVIVGHSLGGLSLALAAE 95 (171)
Q Consensus 67 ~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~ 95 (171)
+.++.. +..+-.++|||+|-+.|+.++.
T Consensus 74 ~~l~~~-Gi~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 74 RLWRSW-GVRPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred HHHHHc-CCcccEEEecCHHHHHHHHHhC
Confidence 444555 5678899999999988877764
No 260
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=63.31 E-value=42 Score=24.63 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCCCCc--hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHh-HHHHHHHHHhcCCCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGA--WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEY-NEPLLEILASLSADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~lvG 82 (171)
+.|+||++.|+-++. ..-..+.+.+.++|+.|.++.-| +-++. -.-+..+-+.+.....|.++-
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~p-------------t~eE~~~p~lwRfw~~lP~~G~i~IF~ 95 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKP-------------SDRERTQWYFQRYVQHLPAAGEIVLFD 95 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCC-------------CHHHHcChHHHHHHHhCCCCCeEEEEe
Confidence 458999999986543 45678888998999999988654 23333 333566777787778888888
Q ss_pred eChhHHH
Q 030815 83 HSLGGLS 89 (171)
Q Consensus 83 ~S~Gg~~ 89 (171)
.|+=+-+
T Consensus 96 rSwY~~~ 102 (230)
T TIGR03707 96 RSWYNRA 102 (230)
T ss_pred CchhhhH
Confidence 8854443
No 261
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=60.63 E-value=51 Score=25.23 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=43.7
Q ss_pred CeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCC--------CCCCC---c--cccc-cccHHHhHHHHHHHHHhcC
Q 030815 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTA--------SGIDM---K--KIQD-VHSFYEYNEPLLEILASLS 73 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g--------~g~s~---~--~~~~-~~~~~~~~~~~~~~i~~~~ 73 (171)
|.|+|.-|.++ ..+.++..||.|+..||.= .|..- + ++.. ..+.+...+.+.+.++...
T Consensus 253 Pmi~fakG~g~-------~Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG 325 (359)
T KOG2872|consen 253 PMILFAKGSGG-------ALEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFG 325 (359)
T ss_pred ceEEEEcCcch-------HHHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHhC
Confidence 67888888553 5677888899999999852 11110 0 1111 2255666677777888875
Q ss_pred CCCcEEEEEeC
Q 030815 74 ADEKVVIVGHS 84 (171)
Q Consensus 74 ~~~~~~lvG~S 84 (171)
+.+-|.=.||.
T Consensus 326 ~~ryI~NLGHG 336 (359)
T KOG2872|consen 326 KSRYIANLGHG 336 (359)
T ss_pred ccceEEecCCC
Confidence 44556666664
No 262
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=60.33 E-value=88 Score=25.11 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=61.0
Q ss_pred EEEcCCCCC-chhHHhhHHHHHhCCCeEEEecCCCCCCCCcccc----------------------ccccHHHhHHHHHH
Q 030815 11 VLVHGSNHG-AWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQ----------------------DVHSFYEYNEPLLE 67 (171)
Q Consensus 11 v~lHG~~~~-~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~----------------------~~~~~~~~~~~~~~ 67 (171)
|++=|..+. ......+.+.+.+.|..++.+|.--.+......+ ....++...+....
T Consensus 4 I~iigT~DTK~~E~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~ga~~ 83 (403)
T PF06792_consen 4 IAIIGTLDTKGEELLYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARGAAR 83 (403)
T ss_pred EEEEEccCCCHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHHHHH
Confidence 344454443 4567778888989999999998644333221110 00123333444445
Q ss_pred HHHhcC---CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEE
Q 030815 68 ILASLS---ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIF 106 (171)
Q Consensus 68 ~i~~~~---~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~ 106 (171)
++..+. ...-|+-+|-|.|..++..+.+.+|--+-++++
T Consensus 84 ~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmV 125 (403)
T PF06792_consen 84 FVSDLYDEGKIDGVIGIGGSGGTALATAAMRALPIGFPKLMV 125 (403)
T ss_pred HHHHHHhcCCccEEEEecCCccHHHHHHHHHhCCCCCCeEEE
Confidence 555552 346689999999999999999999876777653
No 263
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=60.17 E-value=37 Score=24.10 Aligned_cols=56 Identities=23% Similarity=0.229 Sum_probs=34.1
Q ss_pred CCeEEEEcCCCCCch---hHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHH
Q 030815 7 QKHFVLVHGSNHGAW---CWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILA 70 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~---~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~ 70 (171)
+.+|+++||-.+.-- ..+...+.|.+.|.++-.-.++|.|.+ -..+..+++.++|+
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~--------i~~~~~~~~~~~l~ 213 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHE--------ISPEELRDLREFLE 213 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS----------HHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCC--------CCHHHHHHHHHHHh
Confidence 568999999886643 346778888888887777777765533 23444555555554
No 264
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=60.12 E-value=7.4 Score=29.69 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCCcEEEEEeChhHHHHHHHHH
Q 030815 65 LLEILASLSADEKVVIVGHSLGGLSLALAAE 95 (171)
Q Consensus 65 ~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~ 95 (171)
+.+.++.. +..+-.++|||+|=+.|+.++.
T Consensus 74 l~~~l~~~-Gi~P~~v~GhSlGE~aA~~aaG 103 (318)
T PF00698_consen 74 LARLLRSW-GIKPDAVIGHSLGEYAALVAAG 103 (318)
T ss_dssp HHHHHHHT-THCESEEEESTTHHHHHHHHTT
T ss_pred hhhhhccc-ccccceeeccchhhHHHHHHCC
Confidence 33455555 6788899999999888877754
No 265
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.93 E-value=76 Score=25.75 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=36.0
Q ss_pred HHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCCcc--eeEEEEec
Q 030815 59 YEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKFPHK--ISVAIFLT 108 (171)
Q Consensus 59 ~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~~~--~~~~v~~~ 108 (171)
+++.+.+.++-+.+ ....+.+|--++=|.-|...|..+-+. +.|+|+.-
T Consensus 198 e~Lm~El~~Ik~~~-~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTK 248 (451)
T COG0541 198 EELMDELKEIKEVI-NPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTK 248 (451)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEc
Confidence 45556666655556 678899999999999999999876543 77887543
No 266
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=58.20 E-value=24 Score=27.13 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=24.2
Q ss_pred ccCCCeEEEEcCCCCCchhHH--hhHHHHHhCCCe
Q 030815 4 AKKQKHFVLVHGSNHGAWCWY--KVKPQLEAAGHR 36 (171)
Q Consensus 4 ~~~~~~vv~lHG~~~~~~~~~--~~~~~l~~~g~~ 36 (171)
++++|.++=+||+.|....|- -+++++.+.|-+
T Consensus 106 ~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~ 140 (344)
T KOG2170|consen 106 NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR 140 (344)
T ss_pred CCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc
Confidence 357899999999998887763 466677665543
No 267
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=57.79 E-value=16 Score=27.25 Aligned_cols=29 Identities=31% Similarity=0.249 Sum_probs=20.9
Q ss_pred HHHHhcCCCCcEEEEEeChhHHHHHHHHH
Q 030815 67 EILASLSADEKVVIVGHSLGGLSLALAAE 95 (171)
Q Consensus 67 ~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~ 95 (171)
+.++...+..+-.++|||+|=+.|..++.
T Consensus 74 ~~l~~~g~i~p~~v~GhS~GE~aAa~~aG 102 (290)
T TIGR00128 74 LKLKEQGGLKPDFAAGHSLGEYSALVAAG 102 (290)
T ss_pred HHHHHcCCCCCCEEeecCHHHHHHHHHhC
Confidence 33444422678899999999988877764
No 268
>COG0218 Predicted GTPase [General function prediction only]
Probab=57.78 E-value=21 Score=25.54 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=26.1
Q ss_pred EEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEE
Q 030815 37 VTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIV 81 (171)
Q Consensus 37 v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lv 81 (171)
...+|+||+|....+.. -.+.|.+.+.++|+.......++++
T Consensus 72 ~~lVDlPGYGyAkv~k~---~~e~w~~~i~~YL~~R~~L~~vvll 113 (200)
T COG0218 72 LRLVDLPGYGYAKVPKE---VKEKWKKLIEEYLEKRANLKGVVLL 113 (200)
T ss_pred EEEEeCCCcccccCCHH---HHHHHHHHHHHHHhhchhheEEEEE
Confidence 55789999999876652 3556666666666654233334433
No 269
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=56.11 E-value=59 Score=24.21 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=42.9
Q ss_pred CCCCCCccccccccHHHhHHHHHHHHHhcC---CCCcEEE---EEeChhHHHHHHHHH-hCCcceeEEEEecccc
Q 030815 44 ASGIDMKKIQDVHSFYEYNEPLLEILASLS---ADEKVVI---VGHSLGGLSLALAAE-KFPHKISVAIFLTAFM 111 (171)
Q Consensus 44 g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~l---vG~S~Gg~~a~~~~~-~~~~~~~~~v~~~~~~ 111 (171)
.|..|+... +..++.+++...|.+.. ...+.++ .|+++-|..|.++-. .-|..++++++++|.-
T Consensus 9 tHAGSWYt~----~~~~Ls~QL~~wL~~~~~~~~paRaiIaPHAGY~YcG~~Aa~ay~qvdps~v~RIFILGPSH 79 (296)
T KOG3086|consen 9 THAGSWYTA----SGPQLSAQLEGWLSQVTLTKGPARAIIAPHAGYTYCGSCAAYAYKQVDPSNVQRIFILGPSH 79 (296)
T ss_pred ccccccccC----CHHHHHHHHHHHHhccCCCCCCceEEEcCCCCcccchHHHHHHHhhcChhHeeEEEEecCcc
Confidence 454554433 67788888888888762 2224444 378887877766654 4578899999998854
No 270
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=55.51 E-value=98 Score=24.17 Aligned_cols=48 Identities=27% Similarity=0.257 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeChh--HHHHHHHHHhCCcceeEEEEeccc
Q 030815 62 NEPLLEILASLSADEKVVIVGHSLG--GLSLALAAEKFPHKISVAIFLTAF 110 (171)
Q Consensus 62 ~~~~~~~i~~~~~~~~~~lvG~S~G--g~~a~~~~~~~~~~~~~~v~~~~~ 110 (171)
...+...+... ...+++|||-|-= =.+=..++.++|++|.++..-+..
T Consensus 265 ~~~l~nil~~~-p~~kfvLVGDsGE~DpeIYae~v~~fP~RIl~I~IRdvs 314 (373)
T COG4850 265 GQSLRNILRRY-PDRKFVLVGDSGEHDPEIYAEMVRCFPNRILGIYIRDVS 314 (373)
T ss_pred ccHHHHHHHhC-CCceEEEecCCCCcCHHHHHHHHHhCccceeeEeeeecc
Confidence 34455577777 7899999998722 345556678899999998755533
No 271
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=54.92 E-value=74 Score=22.54 Aligned_cols=73 Identities=19% Similarity=0.127 Sum_probs=44.3
Q ss_pred hHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCC--cceeE
Q 030815 26 VKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKFP--HKISV 103 (171)
Q Consensus 26 ~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~--~~~~~ 103 (171)
..+.+..+++.++.+|-+|... .-.+..+.+.++++.. ....+++|--+..+.-.+..+.++. -.+.+
T Consensus 75 ~l~~~~~~~~D~vlIDT~Gr~~---------~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~ 144 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTAGRSP---------RDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDLEQALAFYEAFGIDG 144 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-SSSS---------THHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCE
T ss_pred HHHHHhhcCCCEEEEecCCcch---------hhHHHHHHHHHHhhhc-CCccceEEEecccChHHHHHHHHHhhcccCce
Confidence 3445556689999999987642 3455666667777776 4556666655555555554444432 24788
Q ss_pred EEEec
Q 030815 104 AIFLT 108 (171)
Q Consensus 104 ~v~~~ 108 (171)
+|+--
T Consensus 145 lIlTK 149 (196)
T PF00448_consen 145 LILTK 149 (196)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 87543
No 272
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=54.41 E-value=26 Score=24.39 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=22.5
Q ss_pred HHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 66 LEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 66 ~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
.+.++.. ....=.++|-|.|+.++..++...
T Consensus 18 l~~L~e~-~~~~d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 18 LKALEEA-GILKKRVAGTSAGAITAALLALGY 48 (194)
T ss_pred HHHHHHc-CCCcceEEEECHHHHHHHHHHcCC
Confidence 3344444 345579999999999999998754
No 273
>COG3933 Transcriptional antiterminator [Transcription]
Probab=54.19 E-value=1.2e+02 Score=24.75 Aligned_cols=70 Identities=21% Similarity=0.212 Sum_probs=47.7
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCc--EEEEEeC
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEK--VVIVGHS 84 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~lvG~S 84 (171)
-.++|..||...-.+ +-..+..|-+. --+.++|+| -.-+..+..+.+.+.+++. +..+ +.|| .
T Consensus 109 v~vIiiAHG~sTASS-maevanrLL~~-~~~~aiDMP----------Ldvsp~~vle~l~e~~k~~-~~~~GlllLV--D 173 (470)
T COG3933 109 VKVIIIAHGYSTASS-MAEVANRLLGE-EIFIAIDMP----------LDVSPSDVLEKLKEYLKER-DYRSGLLLLV--D 173 (470)
T ss_pred eeEEEEecCcchHHH-HHHHHHHHhhc-cceeeecCC----------CcCCHHHHHHHHHHHHHhc-CccCceEEEE--e
Confidence 357888899765443 55666666554 457788987 3347888899999999888 4444 4444 7
Q ss_pred hhHHHHH
Q 030815 85 LGGLSLA 91 (171)
Q Consensus 85 ~Gg~~a~ 91 (171)
||....+
T Consensus 174 MGSL~~f 180 (470)
T COG3933 174 MGSLTSF 180 (470)
T ss_pred cchHHHH
Confidence 8876443
No 274
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=53.73 E-value=24 Score=26.83 Aligned_cols=32 Identities=31% Similarity=0.314 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 65 LLEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 65 ~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+.+.|+.. +..+-++.|-|+|+.++..+|...
T Consensus 29 Vl~aL~e~-gi~~~~iaGtS~GAiva~l~A~g~ 60 (306)
T COG1752 29 VLKALEEA-GIPIDVIAGTSAGAIVAALYAAGM 60 (306)
T ss_pred HHHHHHHc-CCCccEEEecCHHHHHHHHHHcCC
Confidence 44555555 568889999999999999998754
No 275
>PRK09936 hypothetical protein; Provisional
Probab=53.59 E-value=60 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=30.1
Q ss_pred EEcCCCC----CchhHHhhHHHHHhCCCeEEEecCCCCCCC
Q 030815 12 LVHGSNH----GAWCWYKVKPQLEAAGHRVTALDLTASGID 48 (171)
Q Consensus 12 ~lHG~~~----~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s 48 (171)
|+..... +...|+.+.+.++..|++.+.+.|.++|.+
T Consensus 25 F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~ 65 (296)
T PRK09936 25 FYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDA 65 (296)
T ss_pred eeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCC
Confidence 4444443 345799999999999999999999999877
No 276
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=53.49 E-value=27 Score=23.91 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=23.5
Q ss_pred HHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCC
Q 030815 66 LEILASLSADEKVVIVGHSLGGLSLALAAEKFP 98 (171)
Q Consensus 66 ~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~ 98 (171)
.+.++.. ....-.++|-|.|+.++..++...+
T Consensus 17 l~aL~e~-gi~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 17 AKALRER-GPLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred HHHHHHc-CCCCCEEEEECHHHHHHHHHHcCCC
Confidence 3344443 3457799999999999999987643
No 277
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=53.00 E-value=59 Score=20.88 Aligned_cols=73 Identities=23% Similarity=0.210 Sum_probs=45.4
Q ss_pred eEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHH
Q 030815 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGL 88 (171)
Q Consensus 9 ~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~ 88 (171)
.||.-|| .-+......++.+....-.+..++.. ...+.++..+.+.+.++.....+.++++.-=+||-
T Consensus 3 ili~sHG--~~A~gi~~~~~~i~G~~~~i~~~~~~----------~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 3 IIIATHG--GFASGLLNSAEMILGEQENVEAIDFP----------PGESPDDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred EEEEcCH--HHHHHHHHHHHHhcCCCCCeEEEEeC----------CCCCHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 4677788 33444555666665433456666654 22367888888888888874456677776556776
Q ss_pred HHHHH
Q 030815 89 SLALA 93 (171)
Q Consensus 89 ~a~~~ 93 (171)
....+
T Consensus 71 p~n~~ 75 (122)
T cd00006 71 PNNAA 75 (122)
T ss_pred HHHHH
Confidence 54433
No 278
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=52.58 E-value=36 Score=23.38 Aligned_cols=52 Identities=15% Similarity=0.053 Sum_probs=27.8
Q ss_pred HHHhHHHHHHHHHhc-CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEecc
Q 030815 58 FYEYNEPLLEILASL-SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTA 109 (171)
Q Consensus 58 ~~~~~~~~~~~i~~~-~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~ 109 (171)
.++..+.+.+.++.+ ....+|.++|-|..|...++++...++.+..++=.+|
T Consensus 50 ~~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np 102 (160)
T PF08484_consen 50 VEQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNP 102 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-G
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCCh
Confidence 344445555565554 3567899999999999888888765666666654443
No 279
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=52.37 E-value=71 Score=26.37 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=52.7
Q ss_pred cCCCeEEEEcCCCCCc--hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHH-HHHHHHHhcCCCCcEEEE
Q 030815 5 KKQKHFVLVHGSNHGA--WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNE-PLLEILASLSADEKVVIV 81 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lv 81 (171)
.+.+++|++.|+-++. ..-..+.+.|..+|++|..+..| +-++... -+..+-..+.....|.|.
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P-------------~~eE~~~~flwRfw~~lP~~G~I~IF 103 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRP-------------SDEERERPPMWRFWRRLPPKGKIGIF 103 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCC-------------CHHHhcCcHHHHHHHhCCCCCeEEEE
Confidence 4568899999986554 45778999999999999998665 2333333 356677778777888998
Q ss_pred EeChhHHHH
Q 030815 82 GHSLGGLSL 90 (171)
Q Consensus 82 G~S~Gg~~a 90 (171)
-.|+=+-+.
T Consensus 104 dRSWY~~vl 112 (493)
T TIGR03708 104 FGSWYTRPL 112 (493)
T ss_pred cCcccchhh
Confidence 888654443
No 280
>PRK10279 hypothetical protein; Provisional
Probab=52.29 E-value=27 Score=26.67 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=23.1
Q ss_pred HHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 66 LEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 66 ~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
.+.++.. +...-.++|-|+|+.++..++...
T Consensus 24 L~aL~E~-gi~~d~i~GtS~GAlvga~yA~g~ 54 (300)
T PRK10279 24 INALKKV-GIEIDIVAGCSIGSLVGAAYACDR 54 (300)
T ss_pred HHHHHHc-CCCcCEEEEEcHHHHHHHHHHcCC
Confidence 3444444 456789999999999999988653
No 281
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=52.28 E-value=54 Score=20.19 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=48.3
Q ss_pred hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEE---eChhHHHHHHHHHhC
Q 030815 21 WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVG---HSLGGLSLALAAEKF 97 (171)
Q Consensus 21 ~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG---~S~Gg~~a~~~~~~~ 97 (171)
..+...++.|++.|+.|+.|-.-+. + ...+.+++.+.-...|... +.|+++. .|-|+.+=..+|..+
T Consensus 16 ~~f~~~a~~L~~~G~~vvnPa~~~~-----~--~~~~~~~ym~~~l~~L~~c---D~i~~l~gWe~S~GA~~E~~~A~~l 85 (92)
T PF14359_consen 16 PAFNAAAKRLRAKGYEVVNPAELGI-----P--EGLSWEEYMRICLAMLSDC---DAIYMLPGWENSRGARLEHELAKKL 85 (92)
T ss_pred HHHHHHHHHHHHCCCEEeCchhhCC-----C--CCCCHHHHHHHHHHHHHhC---CEEEEcCCcccCcchHHHHHHHHHC
Confidence 4467788899999999998855411 1 1235677777777777755 4555544 799999999988876
Q ss_pred Cc
Q 030815 98 PH 99 (171)
Q Consensus 98 ~~ 99 (171)
.-
T Consensus 86 Gl 87 (92)
T PF14359_consen 86 GL 87 (92)
T ss_pred CC
Confidence 53
No 282
>TIGR03586 PseI pseudaminic acid synthase.
Probab=52.26 E-value=1.1e+02 Score=23.78 Aligned_cols=96 Identities=17% Similarity=0.031 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCC-eEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGH-RVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~-~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
.+.||++-=|+ .+...|...++.+.+.|. .++...- -|..+. ..++.--.....++... .-+|.+..|+
T Consensus 133 ~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC----~s~YP~----~~~~~nL~~i~~lk~~f-~~pVG~SDHt 202 (327)
T TIGR03586 133 TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKC----TSSYPA----PLEDANLRTIPDLAERF-NVPVGLSDHT 202 (327)
T ss_pred cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEec----CCCCCC----CcccCCHHHHHHHHHHh-CCCEEeeCCC
Confidence 45678888888 588889999999988776 4554431 222222 12222222333444442 3577788999
Q ss_pred hhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 85 LGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 85 ~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
.|-.++..+......-+++=+.++-..
T Consensus 203 ~G~~~~~aAva~GA~iIEkH~tld~~l 229 (327)
T TIGR03586 203 LGILAPVAAVALGACVIEKHFTLDRSD 229 (327)
T ss_pred CchHHHHHHHHcCCCEEEeCCChhhcC
Confidence 997666655554444444444444433
No 283
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=51.20 E-value=51 Score=24.77 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCchh--HHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEE
Q 030815 9 HFVLVHGSNHGAWC--WYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIV 81 (171)
Q Consensus 9 ~vv~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lv 81 (171)
|+|++-|+.+++.+ ...+.+.+.+.++.|..++--..+...........-...-..+...++.......++|+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~ 76 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVIL 76 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEE
Confidence 68999999887755 45678888888899988874433322111111112223333444444443234455555
No 284
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=51.06 E-value=29 Score=26.54 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=24.0
Q ss_pred HHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 65 LLEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 65 ~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+.+.++.. +...=.++|-|+|+.++..++...
T Consensus 33 vL~aLee~-gi~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 33 VIKALEEA-GIPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred HHHHHHHc-CCCCCEEEEECHHHHHHHHHHcCC
Confidence 34445555 456778999999999999998763
No 285
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=50.91 E-value=72 Score=22.01 Aligned_cols=54 Identities=15% Similarity=-0.002 Sum_probs=37.1
Q ss_pred CchhHHhhHHHHHhCCCeEEEecCCCCCCCCcccc------ccccHHHhHHHHHHHHHhc
Q 030815 19 GAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQ------DVHSFYEYNEPLLEILASL 72 (171)
Q Consensus 19 ~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~------~~~~~~~~~~~~~~~i~~~ 72 (171)
+...|+...+.+++.|.+.+++.+-+++.....+. ......+.++.+.+..+..
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~ 77 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY 77 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHc
Confidence 45679999999999999999988877765432221 1123456677777766666
No 286
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=49.50 E-value=47 Score=22.19 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=11.6
Q ss_pred hHHHHHhCCCeEEEe
Q 030815 26 VKPQLEAAGHRVTAL 40 (171)
Q Consensus 26 ~~~~l~~~g~~v~~~ 40 (171)
.+..|.+.|++|+++
T Consensus 100 ~~~~L~~~GwrvlvV 114 (150)
T COG3727 100 DIKRLQQLGWRVLVV 114 (150)
T ss_pred HHHHHHHcCCeEEEE
Confidence 456778889998876
No 287
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.38 E-value=1.3e+02 Score=23.62 Aligned_cols=77 Identities=14% Similarity=-0.004 Sum_probs=46.6
Q ss_pred EEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHH
Q 030815 10 FVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLS 89 (171)
Q Consensus 10 vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~ 89 (171)
+++++|+..+.+....+++.+...+..|-.+-+--.|.+...+ .-++..+.+.+.++.. .-.+.+..|.|.-+
T Consensus 260 y~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~----ps~e~i~~f~~~L~~~---Gi~vtvR~~~G~di 332 (345)
T PRK14457 260 YILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQR----PSPKRIQAFQRVLEQR---GVAVSVRASRGLDA 332 (345)
T ss_pred EEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCC----CCHHHHHHHHHHHHHC---CCeEEEeCCCCCch
Confidence 6889999999999999999887654444333332233332222 1233344555555544 44466789999765
Q ss_pred HHHH
Q 030815 90 LALA 93 (171)
Q Consensus 90 a~~~ 93 (171)
....
T Consensus 333 ~aaC 336 (345)
T PRK14457 333 NAAC 336 (345)
T ss_pred hhcc
Confidence 5444
No 288
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=49.36 E-value=79 Score=24.50 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=47.5
Q ss_pred EEEcCCCCCchhHHhhHHHHHhCC--CeEEEec--CCCCCCCC-----------ccccccccHHHhHHHHHHHHHhcCCC
Q 030815 11 VLVHGSNHGAWCWYKVKPQLEAAG--HRVTALD--LTASGIDM-----------KKIQDVHSFYEYNEPLLEILASLSAD 75 (171)
Q Consensus 11 v~lHG~~~~~~~~~~~~~~l~~~g--~~v~~~d--~~g~g~s~-----------~~~~~~~~~~~~~~~~~~~i~~~~~~ 75 (171)
|+++|+|.-..-...+++.+.... ..+++++ .|+..... .......+..+.++.+.+.++.....
T Consensus 57 lL~YG~GSKr~lL~~Fa~~~l~~~~~~~~vvvnGy~p~~~~k~il~~I~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 136 (326)
T PF04084_consen 57 LLFYGYGSKRKLLNDFAEKYLSDWGDGPVVVVNGYFPSLSIKDILNTIEEALLPEPSKKPKSPSEQLDFIISYLESRPSP 136 (326)
T ss_pred EEEEecChHHHHHHHHHHHHhhccCCCcEEEEEccCCCCcHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHhccCCC
Confidence 678888877777777777765542 4455554 22211000 00112235566666667777666337
Q ss_pred CcEEEEEeChhHHH
Q 030815 76 EKVVIVGHSLGGLS 89 (171)
Q Consensus 76 ~~~~lvG~S~Gg~~ 89 (171)
.+++|+=|+.-|..
T Consensus 137 ~~l~lvIHnIDg~~ 150 (326)
T PF04084_consen 137 PPLYLVIHNIDGPS 150 (326)
T ss_pred CceEEEEECCCChh
Confidence 89999999998876
No 289
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=48.33 E-value=41 Score=24.32 Aligned_cols=24 Identities=33% Similarity=0.270 Sum_probs=19.3
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhC
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+...-.++|-|.|+.++..++...
T Consensus 26 gi~~~~i~GtSaGAi~aa~~a~g~ 49 (221)
T cd07210 26 GLEPSAISGTSAGALVGGLFASGI 49 (221)
T ss_pred CCCceEEEEeCHHHHHHHHHHcCC
Confidence 345568999999999999998644
No 290
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=48.02 E-value=56 Score=23.83 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=26.8
Q ss_pred hHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEE
Q 030815 22 CWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIV 81 (171)
Q Consensus 22 ~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lv 81 (171)
.++.+++.|.++|+.|.-+.+.- ..+...+.+.+...++.. +...+.++
T Consensus 50 aMRhfa~~L~~~G~~V~Y~~~~~----------~~~~~s~~~~L~~~~~~~-~~~~~~~~ 98 (224)
T PF04244_consen 50 AMRHFADELRAKGFRVHYIELDD----------PENTQSFEDALARALKQH-GIDRLHVM 98 (224)
T ss_dssp HHHHHHHHHHHTT--EEEE-TT-----------TT--SSHHHHHHHHHHHH-----EEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCC----------ccccccHHHHHHHHHHHc-CCCEEEEE
Confidence 47788999999999999887641 112334455566666666 45555555
No 291
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=47.64 E-value=36 Score=25.59 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=23.6
Q ss_pred HHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 65 LLEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 65 ~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+.+.++.. +...=.++|-|+|+.++..++...
T Consensus 28 VL~aLeE~-gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 28 ILQALEEA-GIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHc-CCCccEEEEECHHHHHHHHHHcCC
Confidence 34444544 456678999999999999998753
No 292
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=47.49 E-value=36 Score=24.39 Aligned_cols=32 Identities=38% Similarity=0.414 Sum_probs=23.8
Q ss_pred HHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCC
Q 030815 66 LEILASLSADEKVVIVGHSLGGLSLALAAEKFP 98 (171)
Q Consensus 66 ~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~ 98 (171)
.+.+... ....-.++|.|.|+.++..++...+
T Consensus 17 l~aL~e~-g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 17 LKALAEA-GIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHc-CCCCCEEEEECHHHHHHHHHHcCCc
Confidence 3444444 3466789999999999999988764
No 293
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=47.34 E-value=22 Score=23.07 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=23.7
Q ss_pred EEEEcCCCCCchhHHhhHHHHHhCCCeEEEe
Q 030815 10 FVLVHGSNHGAWCWYKVKPQLEAAGHRVTAL 40 (171)
Q Consensus 10 vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~ 40 (171)
+|...|..++-..+-.+++.|.++|++|...
T Consensus 2 li~~~Gt~Ghv~P~lala~~L~~rGh~V~~~ 32 (139)
T PF03033_consen 2 LIATGGTRGHVYPFLALARALRRRGHEVRLA 32 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred EEEEcCChhHHHHHHHHHHHHhccCCeEEEe
Confidence 4555677777777889999999999998754
No 294
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=47.13 E-value=18 Score=26.46 Aligned_cols=72 Identities=19% Similarity=0.144 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCCCCch--hHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhH-HHHHHHHHhcCCCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGAW--CWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYN-EPLLEILASLSADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~--~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~lvG 82 (171)
+.|+||++.|+.++.. .-..+.+.|.++|++|.++.-| +-++.. .-+..+-..+.....|.++=
T Consensus 29 ~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~p-------------t~eE~~~p~lwRfw~~lP~~G~I~if~ 95 (228)
T PF03976_consen 29 GIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKP-------------TDEELRRPFLWRFWRALPARGQIGIFD 95 (228)
T ss_dssp HHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS---------------HHHHTS-TTHHHHTTS--TT-EEEEE
T ss_pred CCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCC-------------ChhHcCCCcHHHHHHhCCCCCEEEEEe
Confidence 3568999999976653 3567777788889999998754 233332 23566777777777888887
Q ss_pred eChhHHHH
Q 030815 83 HSLGGLSL 90 (171)
Q Consensus 83 ~S~Gg~~a 90 (171)
.|+=.-+.
T Consensus 96 rSWY~~~l 103 (228)
T PF03976_consen 96 RSWYEDVL 103 (228)
T ss_dssp S-GGGGGT
T ss_pred cchhhHHH
Confidence 77544433
No 295
>PF03283 PAE: Pectinacetylesterase
Probab=46.95 E-value=49 Score=26.01 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=19.1
Q ss_pred cCCCCcEEEEEeChhHHHHHHHHH
Q 030815 72 LSADEKVVIVGHSLGGLSLALAAE 95 (171)
Q Consensus 72 ~~~~~~~~lvG~S~Gg~~a~~~~~ 95 (171)
+...++++|.|.|.||.-++..+.
T Consensus 152 l~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 152 LPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred CcccceEEEeccChHHHHHHHHHH
Confidence 456789999999999997776544
No 296
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=46.84 E-value=36 Score=23.45 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=27.5
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEe
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTAL 40 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~ 40 (171)
...+.|+++-|-|.+..+=-..+++|..+|+.|.++
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~ 58 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVY 58 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEE
Confidence 456788899998877766667899999999998884
No 297
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=46.75 E-value=63 Score=26.80 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCC---CCc--hhHHhhHHHHHhCCC-eEEEecCC----------CCCCCCccccccccHHHhHHHHHHHH
Q 030815 6 KQKHFVLVHGSN---HGA--WCWYKVKPQLEAAGH-RVTALDLT----------ASGIDMKKIQDVHSFYEYNEPLLEIL 69 (171)
Q Consensus 6 ~~~~vv~lHG~~---~~~--~~~~~~~~~l~~~g~-~v~~~d~~----------g~g~s~~~~~~~~~~~~~~~~~~~~i 69 (171)
+..++|++=|.| +++ +-|.. +.|+..+. -|+.+++| |+....+.- ...+.+--.+++.+-|
T Consensus 134 n~tVlVWiyGGGF~sGt~SLdvYdG--k~la~~envIvVs~NYRvG~FGFL~l~~~~eaPGNm-Gl~DQqLAl~WV~~Ni 210 (601)
T KOG4389|consen 134 NLTVLVWIYGGGFYSGTPSLDVYDG--KFLAAVENVIVVSMNYRVGAFGFLYLPGHPEAPGNM-GLLDQQLALQWVQENI 210 (601)
T ss_pred CceEEEEEEcCccccCCcceeeecc--ceeeeeccEEEEEeeeeeccceEEecCCCCCCCCcc-chHHHHHHHHHHHHhH
Confidence 455888888876 222 22433 44554433 23334444 111111111 1223333355666767
Q ss_pred Hhc-CCCCcEEEEEeChhHH-HHHHHHHhC-CcceeEEEEecccc
Q 030815 70 ASL-SADEKVVIVGHSLGGL-SLALAAEKF-PHKISVAIFLTAFM 111 (171)
Q Consensus 70 ~~~-~~~~~~~lvG~S~Gg~-~a~~~~~~~-~~~~~~~v~~~~~~ 111 (171)
... .+..+|.|+|.|.|+. +.+++..=. ...++..|+-++..
T Consensus 211 ~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~ 255 (601)
T KOG4389|consen 211 AAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSL 255 (601)
T ss_pred HHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCC
Confidence 666 4667899999999976 444443211 12355555555443
No 298
>PHA02114 hypothetical protein
Probab=46.64 E-value=36 Score=21.42 Aligned_cols=32 Identities=34% Similarity=0.372 Sum_probs=24.1
Q ss_pred EEEEcCCCCCchhHHhhHHHHHhCCCeEEEec
Q 030815 10 FVLVHGSNHGAWCWYKVKPQLEAAGHRVTALD 41 (171)
Q Consensus 10 vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d 41 (171)
||+=-.+..++..|..++..|.+.||.|+.-+
T Consensus 85 ivldvn~amsr~pwi~v~s~le~~g~~vvatq 116 (127)
T PHA02114 85 IVLDVNYAMSRAPWIKVISRLEEAGFNVVATQ 116 (127)
T ss_pred EEEEehhhhccCcHHHHHHHHHhcCceeeehh
Confidence 44444566777889999999988899988653
No 299
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=46.21 E-value=81 Score=26.07 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=52.2
Q ss_pred cCCCeEEEEcCCCCC--chhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHH-HHHHHHhcCCCCcEEEE
Q 030815 5 KKQKHFVLVHGSNHG--AWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEP-LLEILASLSADEKVVIV 81 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~lv 81 (171)
.+.++||++.|.... ...-+.+.+.+.++|++|..+.-| +-++...+ +..+-+++.....+.++
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~P-------------t~~E~~~~~lwRf~~~lP~~G~i~iF 362 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAP-------------TDEEKAQHYLWRFWRHIPRRGRITIF 362 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCc-------------CHHHHcCcHHHHHHHhCCCCCeEEEE
Confidence 456899999998644 455778889999999999988544 33444333 66777888777888888
Q ss_pred EeChhHHH
Q 030815 82 GHSLGGLS 89 (171)
Q Consensus 82 G~S~Gg~~ 89 (171)
-.|+=+-+
T Consensus 363 dRSwY~~v 370 (493)
T TIGR03708 363 DRSWYGRV 370 (493)
T ss_pred cCCccCCc
Confidence 88854443
No 300
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=46.10 E-value=1.2e+02 Score=22.57 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=53.5
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCC-eEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEE-EE
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGH-RVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVI-VG 82 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~-~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l-vG 82 (171)
+.+.||++--|...+.+.|...++.+.+.|- .++.... | -|...+.. ...-.... ...++.. -.-+|.+ .+
T Consensus 130 ~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~r-G--~s~y~~~~--~~~~dl~~-i~~lk~~-~~~pV~~ds~ 202 (260)
T TIGR01361 130 KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCER-G--IRTFEKAT--RNTLDLSA-VPVLKKE-THLPIIVDPS 202 (260)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEC-C--CCCCCCCC--cCCcCHHH-HHHHHHh-hCCCEEEcCC
Confidence 3466899999999999999999999988776 4544432 2 22221101 01111122 2233332 2367777 89
Q ss_pred eChh----HHHHHHHHHhCCcceeEEEEecc
Q 030815 83 HSLG----GLSLALAAEKFPHKISVAIFLTA 109 (171)
Q Consensus 83 ~S~G----g~~a~~~~~~~~~~~~~~v~~~~ 109 (171)
||.| ...+..+|.... ..|+++..=
T Consensus 203 Hs~G~r~~~~~~~~aAva~G--a~gl~iE~H 231 (260)
T TIGR01361 203 HAAGRRDLVIPLAKAAIAAG--ADGLMIEVH 231 (260)
T ss_pred CCCCccchHHHHHHHHHHcC--CCEEEEEeC
Confidence 9988 133333344433 466555443
No 301
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=45.68 E-value=1.3e+02 Score=22.60 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=23.8
Q ss_pred eEEEEcCCC--CCchhHHhhHHHHHhCCCeEEEecCC
Q 030815 9 HFVLVHGSN--HGAWCWYKVKPQLEAAGHRVTALDLT 43 (171)
Q Consensus 9 ~vv~lHG~~--~~~~~~~~~~~~l~~~g~~v~~~d~~ 43 (171)
+++++++++ |.......+++.|.+.|+.|..+...
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 355556554 44455678899998889998877543
No 302
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=45.20 E-value=2e+02 Score=24.60 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=57.8
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHH--------HHHhCCCeEEEec----CCCCCCCCccccccccHHHhHHHHHHHHHhc
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKP--------QLEAAGHRVTALD----LTASGIDMKKIQDVHSFYEYNEPLLEILASL 72 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~--------~l~~~g~~v~~~d----~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~ 72 (171)
.++.++-+--|.+-+......+.+ .+.+-|-.|..-. .+.+|..+.+.. ......++.+...|+..
T Consensus 256 ~~~ipLTLSiGvg~g~~~~~elg~vA~~~L~lAlgRGGDQVvIke~~~k~~fyGG~s~~~e--krTRvRaRvis~al~d~ 333 (655)
T COG3887 256 QKNIPLTLSIGVGYGENNLIELGEVAQSNLDLALGRGGDQVVIKENNGKVRFYGGKSNPME--KRTRVRARVISTALSDI 333 (655)
T ss_pred ccCcceEEEEEeccCcccHHHHHHHHHHhHHHHhccCCceEEEEcCCCceeeeCCCcchhH--HhHHHHHHHHHHHHHHH
Confidence 345567777777755544443333 2223355665542 233454333321 12334445555555443
Q ss_pred -CCCCcEEEEEe------ChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 73 -SADEKVVIVGH------SLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 73 -~~~~~~~lvG~------S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
...++|+++|| +.|+.+++......-++ .+.+++.|-.
T Consensus 334 i~e~d~VfImGHk~pDmDalGsAig~~~~A~~~~~-~a~~v~dp~~ 378 (655)
T COG3887 334 IKESDNVFIMGHKFPDMDALGSAIGMQKFASMNNK-EAFAVLDPED 378 (655)
T ss_pred HhhcCcEEEEccCCCChHHHHHHHHHHHHHHhccc-ccEEEECccc
Confidence 35689999999 57888888776554444 5666777554
No 303
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=45.10 E-value=1.7e+02 Score=23.80 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCC--cceeEEEEe
Q 030815 30 LEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKFP--HKISVAIFL 107 (171)
Q Consensus 30 l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~--~~~~~~v~~ 107 (171)
+...+|.++.+|-+|.-. .-+.+.+.+....+.. ....+++|--++-|.-+...+..+. ..+.++|+-
T Consensus 178 ~~~~~~DvViIDTaGr~~---------~d~~lm~El~~i~~~~-~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlT 247 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHK---------QEDSLFEEMLQVAEAI-QPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIIT 247 (429)
T ss_pred HHhCCCCEEEEECCCCCc---------chHHHHHHHHHHhhhc-CCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEE
Confidence 334478888888876321 2344556666665555 4566777777777766666666543 246677654
No 304
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=45.07 E-value=80 Score=25.74 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCC----chhHHhhHHHHHhCCCeEEEecCCCCCCCCcc
Q 030815 8 KHFVLVHGSNHG----AWCWYKVKPQLEAAGHRVTALDLTASGIDMKK 51 (171)
Q Consensus 8 ~~vv~lHG~~~~----~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~ 51 (171)
.-||+++|+|.- +..-+++++.|+++|.+|----+|=-|+-+.+
T Consensus 307 ~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVAGRMPGH 354 (462)
T PRK09444 307 HSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGH 354 (462)
T ss_pred CcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCc
Confidence 359999999843 33356789999999998876655555555443
No 305
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=43.93 E-value=1.6e+02 Score=23.19 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhC--CCeEEEecCC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAA--GHRVTALDLT 43 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~--g~~v~~~d~~ 43 (171)
.+.+=+|+||.|.+.. -..+.+.+.++ +..|+..|-.
T Consensus 210 ~g~vDi~V~gaGTGGT-itgvGRylke~~~~~kVv~vdp~ 248 (362)
T KOG1252|consen 210 DGKVDIFVAGAGTGGT-ITGVGRYLKEQNPNIKVVGVDPQ 248 (362)
T ss_pred cCCCCEEEeccCCCce-eechhHHHHHhCCCCEEEEeCCC
Confidence 3556788898875543 23556666654 4667766643
No 306
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=43.79 E-value=98 Score=20.76 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=35.1
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSL 90 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a 90 (171)
..+.++|.++||.|+-+-.... ...+..+.+..+...+..-....-|.++|...|-.++
T Consensus 15 ~~i~~~L~~~g~eV~D~G~~~~--------~~~dy~~~a~~va~~V~~~~~d~GIliCgtGiG~~ia 73 (140)
T PF02502_consen 15 EAIKEYLEEKGYEVIDFGTYSE--------DSVDYPDFAEKVAEAVASGEADRGILICGTGIGMSIA 73 (140)
T ss_dssp HHHHHHHHHTTEEEEEESESST--------ST--HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHH
T ss_pred HHHHHHHHHCCCEEEEeCCCCC--------CCCCHHHHHHHHHHHHHcccCCeEEEEcCCChhhhhH
Confidence 4578899999998876632211 1236777777777777766223345666555554443
No 307
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=43.41 E-value=1.6e+02 Score=22.98 Aligned_cols=96 Identities=21% Similarity=0.071 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCe---EEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEE
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHR---VTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVG 82 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~---v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG 82 (171)
.+.|||+-=|+ .+...|...++.+.+.|.. ++...-. |..+. ..++.--.....++... .-+|.+-+
T Consensus 132 ~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~----s~YP~----~~~~~nL~~I~~Lk~~f-~~pVG~Sd 201 (329)
T TIGR03569 132 FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCT----TEYPA----PFEDVNLNAMDTLKEAF-DLPVGYSD 201 (329)
T ss_pred cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEEC----CCCCC----CcccCCHHHHHHHHHHh-CCCEEECC
Confidence 45678888888 5788899999999887753 4443321 21121 12222222233444432 36788889
Q ss_pred eChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 83 HSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 83 ~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
|+.|-.++..+......-+++=+.++-..
T Consensus 202 Ht~G~~~~~aAvalGA~iIEkH~tldk~~ 230 (329)
T TIGR03569 202 HTLGIEAPIAAVALGATVIEKHFTLDKNL 230 (329)
T ss_pred CCccHHHHHHHHHcCCCEEEeCCChhhcC
Confidence 99997766655555445455555555444
No 308
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=42.85 E-value=60 Score=22.18 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=21.5
Q ss_pred HHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 67 EILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 67 ~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+.++.. ....-.++|-|.|+.++..++...
T Consensus 20 ~~L~~~-~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 20 KALEEA-GIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHc-CCCeeEEEEECHHHHHHHHHHcCC
Confidence 334333 334568999999999999998653
No 309
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=42.82 E-value=50 Score=22.66 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=19.3
Q ss_pred CCcEEEEEeChhHHHHHHHHHhC
Q 030815 75 DEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
...=.++|-|.|+.++..++...
T Consensus 27 ~~~d~i~GtSaGAi~aa~~a~g~ 49 (175)
T cd07228 27 IEIDIIAGSSIGALVGALYAAGH 49 (175)
T ss_pred CCeeEEEEeCHHHHHHHHHHcCC
Confidence 45678999999999999988754
No 310
>PRK11460 putative hydrolase; Provisional
Probab=42.41 E-value=1e+02 Score=22.28 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCCCch---hHHhhHHHHHhCCCeEEEecCCCCC
Q 030815 6 KQKHFVLVHGSNHGAW---CWYKVKPQLEAAGHRVTALDLTASG 46 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~---~~~~~~~~l~~~g~~v~~~d~~g~g 46 (171)
.+++++++||-.+..- .-+.+.+.|.+.|..+....+++.|
T Consensus 147 ~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~g 190 (232)
T PRK11460 147 TATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLG 190 (232)
T ss_pred CCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 3578999999876543 3356777887777765555555443
No 311
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=42.10 E-value=56 Score=21.27 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=11.3
Q ss_pred hHHHHHhCCCeEEEe
Q 030815 26 VKPQLEAAGHRVTAL 40 (171)
Q Consensus 26 ~~~~l~~~g~~v~~~ 40 (171)
..+.|.+.|+.|+.+
T Consensus 99 ~~~~L~~~Gw~Vlr~ 113 (117)
T TIGR00632 99 VNSRLQELGWRVLRV 113 (117)
T ss_pred HHHHHHHCcCEEEEE
Confidence 345777889999876
No 312
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=42.04 E-value=37 Score=19.80 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=16.2
Q ss_pred CCeEEEEcCCC-CCchhHHhhHHHHHh-CCCeEEE
Q 030815 7 QKHFVLVHGSN-HGAWCWYKVKPQLEA-AGHRVTA 39 (171)
Q Consensus 7 ~~~vv~lHG~~-~~~~~~~~~~~~l~~-~g~~v~~ 39 (171)
.|.++++||.. .+.+ .+++..++ +|..++.
T Consensus 31 ~~~~~lvhGga~~GaD---~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 31 HPDMVLVHGGAPKGAD---RIAARWARERGVPVIR 62 (71)
T ss_pred CCCEEEEECCCCCCHH---HHHHHHHHHCCCeeEE
Confidence 35677888876 4544 33343332 3555444
No 313
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=41.58 E-value=32 Score=26.39 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=35.9
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCC----------------cceeEEEEeccccCCCCCC---hhHHHHHHhh
Q 030815 75 DEKVVIVGHSLGGLSLALAAEKFP----------------HKISVAIFLTAFMPDTKHQ---PSYVVERFFE 127 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~ 127 (171)
..+++|+|.|-|+.|.-.+..+.. .+|+.+-++++...+.... ....++.+.+
T Consensus 192 ~~~~~LiGFSKGcvVLNqll~El~~~~~~~~~~~~~~~~l~~I~~~~wLD~Gh~g~~~~w~T~~~~L~~l~~ 263 (303)
T PF10561_consen 192 KPPLTLIGFSKGCVVLNQLLYELHYLEELARVDKEIERFLSRISDMYWLDGGHNGGSNTWITDENVLKELAK 263 (303)
T ss_pred CCceEEEEecCcchHHHHHHHHHHhhhcccCCchHHHHHHHhhheEEEeccCCCCCCCceecCHHHHHHHHh
Confidence 347999999999999888866543 2478888888877644333 2334444444
No 314
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=41.35 E-value=1.4e+02 Score=22.79 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=25.8
Q ss_pred eEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecC
Q 030815 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDL 42 (171)
Q Consensus 9 ~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~ 42 (171)
.++...|.+++...+..+++.|.+.|+.|..+-.
T Consensus 4 i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~ 37 (357)
T PRK00726 4 ILLAGGGTGGHVFPALALAEELKKRGWEVLYLGT 37 (357)
T ss_pred EEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEEC
Confidence 4455566777777777999999999999887644
No 315
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=40.82 E-value=1.1e+02 Score=20.62 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=35.2
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSL 90 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a 90 (171)
..+.+.|.++||.|+-+- .+. .. + ....+.+..+...+..-....-|.++|.-.|-.++
T Consensus 14 ~~l~~~L~~~g~eV~D~G--~~~---~~--~-~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~sia 72 (144)
T TIGR00689 14 SEIIEHLKQKGHEVIDCG--TLY---DE--R-VDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIA 72 (144)
T ss_pred HHHHHHHHHCCCEEEEcC--CCC---CC--C-CChHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHH
Confidence 357889999999885442 111 11 1 25677777777777655333446666655665443
No 316
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=40.52 E-value=1.1e+02 Score=22.41 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=37.1
Q ss_pred CCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEe
Q 030815 18 HGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGH 83 (171)
Q Consensus 18 ~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~ 83 (171)
.+.+....+++...+.|..-+.+..-.-|+...| .+...+.+.+.+.+......+-..++|.
T Consensus 43 Sh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P----~S~~~yl~~l~~~l~~~~~g~IAsv~GR 104 (223)
T PF06415_consen 43 SHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPP----KSALKYLEELEEKLAEIGIGRIASVSGR 104 (223)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-T----TTHHHHHHHHHHHHHHHTCTEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCc----chHHHHHHHHHHHHHhhCCceEEEEece
Confidence 3445677888888888865333333333444333 3788888888888888733345566663
No 317
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=40.34 E-value=1.2e+02 Score=22.71 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=47.4
Q ss_pred cCCCeEEEEcCCC--CCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHH-HHHHHHHhcCCCCcEEEE
Q 030815 5 KKQKHFVLVHGSN--HGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNE-PLLEILASLSADEKVVIV 81 (171)
Q Consensus 5 ~~~~~vv~lHG~~--~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lv 81 (171)
++..+|+++-|.- |-...-+.+.+.|..+|++|+++--| +-++... -+...+.++.....|+|.
T Consensus 71 ~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aP-------------t~~E~~qwY~qRy~~~lPa~GeiviF 137 (270)
T COG2326 71 TGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAP-------------TDRERGQWYFQRYVAHLPAAGEIVIF 137 (270)
T ss_pred cCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCC-------------ChHhhccHHHHHHHHhCCCCCeEEEe
Confidence 4567888888864 44455778889999999999888544 3333333 345677888667778888
Q ss_pred EeCh
Q 030815 82 GHSL 85 (171)
Q Consensus 82 G~S~ 85 (171)
-.|+
T Consensus 138 dRSw 141 (270)
T COG2326 138 DRSW 141 (270)
T ss_pred chhh
Confidence 7775
No 318
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=39.60 E-value=28 Score=26.72 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=17.0
Q ss_pred EEEEEeChhHHHHHHHHHhC
Q 030815 78 VVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~~ 97 (171)
=.++|-|+||.++..++..+
T Consensus 34 D~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 34 DWIAGTSTGGILALALLHGK 53 (312)
T ss_pred cEEEeeChHHHHHHHHHcCC
Confidence 36889999999999998754
No 319
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=39.52 E-value=1.7e+02 Score=23.38 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCCC----chhHHhhHHHHHhCCCeEEEecCCCCCCCCc
Q 030815 6 KQKHFVLVHGSNHG----AWCWYKVKPQLEAAGHRVTALDLTASGIDMK 50 (171)
Q Consensus 6 ~~~~vv~lHG~~~~----~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~ 50 (171)
+..-||+++|+|.- +..-+++.+.|+++|..|----+|=-|+-+.
T Consensus 307 nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~VrfaIHPVAGRmPG 355 (463)
T COG1282 307 NASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRFAIHPVAGRMPG 355 (463)
T ss_pred CCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeEeecccccCCCc
Confidence 34569999999843 2335678889999998876554554444443
No 320
>PRK02399 hypothetical protein; Provisional
Probab=39.05 E-value=2.1e+02 Score=23.11 Aligned_cols=96 Identities=19% Similarity=0.153 Sum_probs=59.4
Q ss_pred EEEcCCCCC-chhHHhhHHHHHhCCCeEEEecCCCCCCCCccc----------------------cccccHHHhHHHHHH
Q 030815 11 VLVHGSNHG-AWCWYKVKPQLEAAGHRVTALDLTASGIDMKKI----------------------QDVHSFYEYNEPLLE 67 (171)
Q Consensus 11 v~lHG~~~~-~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~----------------------~~~~~~~~~~~~~~~ 67 (171)
|++=|..+. .+...-+.+.+.+.|..++.+|.-..|....+. +....++...+-...
T Consensus 6 I~iigT~DTK~~E~~yl~~~i~~~g~~v~~iDv~~~~~p~~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~~ 85 (406)
T PRK02399 6 IYIAGTLDTKGEELAYVKDLIEAAGLEVVTVDVSGLGEPPFEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAAA 85 (406)
T ss_pred EEEEeccCCcHHHHHHHHHHHHHCCCceEEEecCCCCCCCCCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHHH
Confidence 455565544 455666778888889999999973333111000 000112333344444
Q ss_pred HHHhc---CCCCcEEEEEeChhHHHHHHHHHhCCcceeEEEE
Q 030815 68 ILASL---SADEKVVIVGHSLGGLSLALAAEKFPHKISVAIF 106 (171)
Q Consensus 68 ~i~~~---~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~ 106 (171)
++..+ ....-++-+|-|.|..++..+.+.+|--+-++++
T Consensus 86 ~v~~L~~~g~i~gviglGGs~GT~lat~aMr~LPiG~PKlmV 127 (406)
T PRK02399 86 FVRELYERGDVAGVIGLGGSGGTALATPAMRALPIGVPKLMV 127 (406)
T ss_pred HHHHHHhcCCccEEEEecCcchHHHHHHHHHhCCCCCCeEEE
Confidence 55443 2456689999999999999999999876666653
No 321
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.80 E-value=1e+02 Score=23.73 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=24.1
Q ss_pred CCchhHHhhHHHHHhCCCeEE-EecCCCCCCC
Q 030815 18 HGAWCWYKVKPQLEAAGHRVT-ALDLTASGID 48 (171)
Q Consensus 18 ~~~~~~~~~~~~l~~~g~~v~-~~d~~g~g~s 48 (171)
-+.++.+.+++..+++|.+|+ .+|.|||-.+
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~~a 96 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHASA 96 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccchHH
Confidence 345667888999999999876 5799998644
No 322
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=38.53 E-value=1.3e+02 Score=20.50 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=35.5
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSL 90 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a 90 (171)
+.+.+.|.++||.|+-+- .+. ... .....+.+..+...+..-....-|.++|...|-.++
T Consensus 16 ~~l~~~L~~~g~eV~D~G--~~~--~~~---~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~sia 75 (148)
T PRK05571 16 EEIIEHLEELGHEVIDLG--PDS--YDA---SVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIA 75 (148)
T ss_pred HHHHHHHHHCCCEEEEcC--CCC--CCC---CCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHH
Confidence 357889999999885432 111 110 125667777777777655334456777666665544
No 323
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=38.04 E-value=1e+02 Score=22.09 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeChhHHH----HHHHHH----hCCcceeEEEEeccc
Q 030815 62 NEPLLEILASLSADEKVVIVGHSLGGLS----LALAAE----KFPHKISVAIFLTAF 110 (171)
Q Consensus 62 ~~~~~~~i~~~~~~~~~~lvG~S~Gg~~----a~~~~~----~~~~~~~~~v~~~~~ 110 (171)
.+.+.+.++.. +.-..+++-||+||.. +..++. .+|+.....+.+-|.
T Consensus 111 ~~~ir~~~e~~-d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~ 166 (216)
T PF00091_consen 111 LEQIRKEIEKC-DSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPF 166 (216)
T ss_dssp HHHHHHHHHTS-TTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-C
T ss_pred ccccchhhccc-cccccceecccccceeccccccccchhhhccccccceeecccccc
Confidence 33444444444 5667788888988653 222222 345555455555555
No 324
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=37.92 E-value=1.1e+02 Score=21.56 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=7.0
Q ss_pred CCeEEEecCCCCC
Q 030815 34 GHRVTALDLTASG 46 (171)
Q Consensus 34 g~~v~~~d~~g~g 46 (171)
|+.++..-+-|.|
T Consensus 33 ~~~~iNLGfsG~~ 45 (178)
T PF14606_consen 33 GLDVINLGFSGNG 45 (178)
T ss_dssp T-EEEEEE-TCCC
T ss_pred CCCeEeeeecCcc
Confidence 6777777665554
No 325
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=37.77 E-value=1.4e+02 Score=20.85 Aligned_cols=59 Identities=24% Similarity=0.257 Sum_probs=34.1
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSL 90 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a 90 (171)
..+.+.|.++||.|+-+- .+. .. + .+..+.+..+...+..-....-|.++|.-.|-.++
T Consensus 16 ~~l~~~L~~~G~eV~D~G--~~~---~e--~-~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~sia 74 (171)
T PRK08622 16 MAVSDYLKSKGHEVIDVG--TYD---FT--R-THYPIFGKKVGEAVASGEADLGVCICGTGVGISNA 74 (171)
T ss_pred HHHHHHHHHCCCEEEEcC--CCC---CC--C-CChHHHHHHHHHHHHcCCCcEEEEEcCCcHHHHHH
Confidence 468889999999885442 111 11 1 24667777777777555233446666555554433
No 326
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=37.76 E-value=82 Score=25.60 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=32.3
Q ss_pred CccccCCCeEEEEcCCC-CCchhHHhhHHHHHhCCCeEEEec
Q 030815 1 MAEAKKQKHFVLVHGSN-HGAWCWYKVKPQLEAAGHRVTALD 41 (171)
Q Consensus 1 ~~~~~~~~~vv~lHG~~-~~~~~~~~~~~~l~~~g~~v~~~d 41 (171)
||....++-||++.-.+ +|...+-.+++.|+.+|+.|..+.
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~ 42 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQ 42 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEe
Confidence 66666777888888765 667778899999998898877653
No 327
>PRK06490 glutamine amidotransferase; Provisional
Probab=37.59 E-value=1.6e+02 Score=21.54 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=43.9
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCC-CCCC----CC-------ccccccccHHHhHHHHHHHHHhcCC
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLT-ASGI----DM-------KKIQDVHSFYEYNEPLLEILASLSA 74 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~-g~g~----s~-------~~~~~~~~~~~~~~~~~~~i~~~~~ 74 (171)
..++|+.|--...... +.+.|.+.|..+..++.. +--. .. +.+...+....+...+.++|+.. -
T Consensus 8 ~~vlvi~h~~~~~~g~---l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~-~ 83 (239)
T PRK06490 8 RPVLIVLHQERSTPGR---VGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVP-L 83 (239)
T ss_pred ceEEEEecCCCCCChH---HHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHH-H
Confidence 4556666865555543 455555666665544321 1000 00 00111122334555566666654 2
Q ss_pred CCcEEEEEeChhHHHHHHHH
Q 030815 75 DEKVVIVGHSLGGLSLALAA 94 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~ 94 (171)
...+-++|.++|..+...++
T Consensus 84 ~~~~PvLGIC~G~Qlla~al 103 (239)
T PRK06490 84 KENKPFLGICLGAQMLARHL 103 (239)
T ss_pred HCCCCEEEECHhHHHHHHHc
Confidence 23456899999999877774
No 328
>PLN02748 tRNA dimethylallyltransferase
Probab=36.88 E-value=2.2e+02 Score=23.49 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhC-CCeEEEec----CCCCC----CC--------------CccccccccHHHhH
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAA-GHRVTALD----LTASG----ID--------------MKKIQDVHSFYEYN 62 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~v~~~d----~~g~g----~s--------------~~~~~~~~~~~~~~ 62 (171)
+++.+|++-|-.++..+- ++..|+.. +..++..| |+|.- .. --.+...++..++.
T Consensus 20 ~~~~~i~i~GptgsGKs~--la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~ 97 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSK--LAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFR 97 (468)
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHH
Confidence 455688888876665432 33444443 56677776 33321 10 01222446888888
Q ss_pred HHHHHHHHhc-CCCCcEEEEE
Q 030815 63 EPLLEILASL-SADEKVVIVG 82 (171)
Q Consensus 63 ~~~~~~i~~~-~~~~~~~lvG 82 (171)
++....|+.+ ......+|||
T Consensus 98 ~~A~~~I~~I~~rgk~PIlVG 118 (468)
T PLN02748 98 DHAVPLIEEILSRNGLPVIVG 118 (468)
T ss_pred HHHHHHHHHHHhcCCCeEEEc
Confidence 8888888876 2344566665
No 329
>PRK09273 hypothetical protein; Provisional
Probab=36.39 E-value=1.7e+02 Score=21.27 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=36.0
Q ss_pred hHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHH
Q 030815 22 CWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSL 90 (171)
Q Consensus 22 ~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a 90 (171)
-+..+.+.|.+.||.|+-+-. + +..+ ...+..+.+..+...+..-....-|.++|.-.|-.++
T Consensus 18 i~~~L~~~L~~~G~eV~D~G~--~--~~~~--~s~dYpd~a~~vA~~V~~g~~d~GIliCGTGiG~siA 80 (211)
T PRK09273 18 IYEALKKVADPKGHEVFNYGM--Y--DEED--HQLTYVQNGIMASILLNSKAVDFVVTGCGTGQGAMLA 80 (211)
T ss_pred HHHHHHHHHHHCCCEEEEeCC--C--CCCC--CCCChHHHHHHHHHHHHcCCCCEEEEEcCcHHHHHHH
Confidence 467888999999998865432 1 1111 0135667777777777655223335555544554443
No 330
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=36.19 E-value=52 Score=27.48 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=22.6
Q ss_pred HHH-HhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 67 EIL-ASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 67 ~~i-~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+.+ +.. +..+-.++|||+|=..++.++.-+
T Consensus 256 ~ll~~~~-GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 256 QLLCDEF-AIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred HHHHHhc-CCCCCEEeecCHHHHHHHHHhCCC
Confidence 444 344 677889999999988888887654
No 331
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=36.06 E-value=34 Score=21.20 Aligned_cols=36 Identities=8% Similarity=0.051 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCchhHH--hhHHHHHhCCCeEEEecC
Q 030815 6 KQKHFVLVHGSNHGAWCWY--KVKPQLEAAGHRVTALDL 42 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~--~~~~~l~~~g~~v~~~d~ 42 (171)
.++.=++++|.+.+...++ .|+|.|+.- ...+.++.
T Consensus 3 ~~~~e~~I~GiT~~Gk~FRPSDWaERL~gv-la~F~~~~ 40 (92)
T PF12112_consen 3 QNPKEIVIQGITSDGKTFRPSDWAERLCGV-LASFRPDH 40 (92)
T ss_dssp ----EEEEEEEETTS-B-S-TTHHHHHHHT-T-EE-SSS
T ss_pred CCccEEEEEeEcCCCCCcCCccHHHHHHHH-HHccCCCC
Confidence 4556789999998877776 489999885 66666654
No 332
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=35.92 E-value=1.5e+02 Score=21.59 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHHhcCCCCcEEEEEeChhHH-HHHHHHHhCCcceeEEE
Q 030815 58 FYEYNEPLLEILASLSADEKVVIVGHSLGGL-SLALAAEKFPHKISVAI 105 (171)
Q Consensus 58 ~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~-~a~~~~~~~~~~~~~~v 105 (171)
-.+-.+.+...|..+...+++++.|-+-||. ++..++..+...+.-+|
T Consensus 7 R~dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvli 55 (220)
T COG1926 7 RTDAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLI 55 (220)
T ss_pred HHHHHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEE
Confidence 3445566677777774458889999999998 77777877654444443
No 333
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=35.47 E-value=1.4e+02 Score=20.15 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=34.3
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSL 90 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a 90 (171)
+.+.+.|.++||.|+-+- .+. .. + .+..+.+..+...+..-....-|.++|.-.|-.++
T Consensus 15 ~~l~~~L~~~g~eV~D~G--~~~--~~---~-~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~sia 73 (143)
T TIGR01120 15 EEIKAFLVERGVKVIDKG--TWS--SE---R-TDYPHYAKQVALAVAGGEVDGGILICGTGIGMSIA 73 (143)
T ss_pred HHHHHHHHHCCCEEEEeC--CCC--CC---C-CCHHHHHHHHHHHHHCCCCceEEEEcCCcHHHHHH
Confidence 357888999999885432 111 11 1 25667777777777555233446666655554443
No 334
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=35.44 E-value=73 Score=23.97 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=35.6
Q ss_pred hHHHHHhCCCeEEEecCCCC-CCCCccccccccHHHhHHHHHHHHHhc-CCCCcEEEEEeChhHHHHH----HHHHhCCc
Q 030815 26 VKPQLEAAGHRVTALDLTAS-GIDMKKIQDVHSFYEYNEPLLEILASL-SADEKVVIVGHSLGGLSLA----LAAEKFPH 99 (171)
Q Consensus 26 ~~~~l~~~g~~v~~~d~~g~-g~s~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~lvG~S~Gg~~a~----~~~~~~~~ 99 (171)
-++.+.+.|-.++++.+--. |.+.... ...++++.++.+.+..+.. .-.+.++++.| ||.++. .+..++-.
T Consensus 162 ~A~~M~~AGaDiiv~H~GlT~gG~~Ga~-~~~sl~~a~~~~~~i~~aa~~v~~dii~l~h--GGPI~~p~D~~~~l~~t~ 238 (268)
T PF09370_consen 162 QARAMAEAGADIIVAHMGLTTGGSIGAK-TALSLEEAAERIQEIFDAARAVNPDIIVLCH--GGPIATPEDAQYVLRNTK 238 (268)
T ss_dssp HHHHHHHHT-SEEEEE-SS-----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEE--CTTB-SHHHHHHHHHH-T
T ss_pred HHHHHHHcCCCEEEecCCccCCCCcCcc-ccCCHHHHHHHHHHHHHHHHHhCCCeEEEEe--CCCCCCHHHHHHHHhcCC
Confidence 35556666888888865321 1111111 2246776666666655544 22455677766 877653 22222233
Q ss_pred ceeEEEEec
Q 030815 100 KISVAIFLT 108 (171)
Q Consensus 100 ~~~~~v~~~ 108 (171)
.+.|.+--+
T Consensus 239 ~~~Gf~G~S 247 (268)
T PF09370_consen 239 GIHGFIGAS 247 (268)
T ss_dssp TEEEEEEST
T ss_pred CCCEEeccc
Confidence 367766443
No 335
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=35.03 E-value=1.6e+02 Score=20.61 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=34.0
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSL 90 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a 90 (171)
..+.+.|.++||.|+-+-- +. .. + .+..+.+..+...+..-....-|.++|.-.|-.++
T Consensus 16 ~~l~~~L~~~G~eV~D~G~--~~--~~---~-~dYpd~a~~va~~V~~g~~~~GIliCGTGiG~sia 74 (171)
T TIGR01119 16 MEVSEFLKSKGYEVLDVGT--YD--FT---R-THYPIFGKKVGEAVVSGEADLGVCICGTGVGINNA 74 (171)
T ss_pred HHHHHHHHHCCCEEEEeCC--CC--CC---C-CChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHH
Confidence 3578899999998854421 11 11 1 24666777777777555233346666655554443
No 336
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=34.31 E-value=78 Score=23.38 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=18.5
Q ss_pred cEEEEEeChhHHHHHHHHHhCC
Q 030815 77 KVVIVGHSLGGLSLALAAEKFP 98 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~ 98 (171)
.=.++|-|.|+.++..++....
T Consensus 28 fd~i~GtSaGAi~a~~~~~g~~ 49 (266)
T cd07208 28 FDLVIGVSAGALNAASYLSGQR 49 (266)
T ss_pred CCEEEEECHHHHhHHHHHhCCc
Confidence 4589999999999999887654
No 337
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=34.18 E-value=2.2e+02 Score=21.92 Aligned_cols=73 Identities=14% Similarity=0.259 Sum_probs=38.3
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhC-CCeEEEecCC----CC--C----------------CCCccccccccHHHhHH
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAA-GHRVTALDLT----AS--G----------------IDMKKIQDVHSFYEYNE 63 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~----g~--g----------------~s~~~~~~~~~~~~~~~ 63 (171)
.+.+|++-|-.++..+ .++..|++. +..++..|-. +. | .+...+...++..++.+
T Consensus 3 ~~~~i~i~GptgsGKt--~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~ 80 (307)
T PRK00091 3 KPKVIVIVGPTASGKT--ALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQR 80 (307)
T ss_pred CceEEEEECCCCcCHH--HHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHH
Confidence 3457788887666543 244455443 5566766642 11 1 01111122346777777
Q ss_pred HHHHHHHhc-CCCCcEEEE
Q 030815 64 PLLEILASL-SADEKVVIV 81 (171)
Q Consensus 64 ~~~~~i~~~-~~~~~~~lv 81 (171)
+..+.++.. .....++++
T Consensus 81 ~a~~~i~~i~~~gk~pIlv 99 (307)
T PRK00091 81 DALAAIADILARGKLPILV 99 (307)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 777777765 233444555
No 338
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=34.15 E-value=1.1e+02 Score=24.54 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGID 48 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s 48 (171)
.+.+.|-+-=+|....+-..+.+.|.+.||.|+++.-.|.|..
T Consensus 183 ~~kp~I~iTmfGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG~ 225 (403)
T PF06792_consen 183 EDKPLIGITMFGVTTPCVDAIRERLEEEGYEVLVFHATGTGGR 225 (403)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHHhcCCeEEEEcCCCCchH
Confidence 4456777877888888899999999999999999999998853
No 339
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=33.64 E-value=2.1e+02 Score=21.56 Aligned_cols=55 Identities=15% Similarity=-0.058 Sum_probs=31.7
Q ss_pred EEcCCCCCc-hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHH
Q 030815 12 LVHGSNHGA-WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILA 70 (171)
Q Consensus 12 ~lHG~~~~~-~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~ 70 (171)
+....+... ...+...+.|.+.|+.|...+.-..... ....+.++.++++.+++.
T Consensus 4 iapSs~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~----~~a~s~~~Ra~dL~~a~~ 59 (282)
T cd07025 4 VAPSSPIDEEERLERAIARLESLGLEVVVGPHVLARDG----YLAGTDEERAADLNAAFA 59 (282)
T ss_pred EeCCCCCCcHHHHHHHHHHHHhCCCEEEeccchhhhcC----ccCCCHHHHHHHHHHHhh
Confidence 344444444 6677788899999999988764332111 011245555566555443
No 340
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=33.49 E-value=1.9e+02 Score=21.19 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCCCC--chhH-HhhHHHHHhCCCeEEEecCCCCCC---CCcc----cc-ccccHHHhHH--HHHHHHHhc
Q 030815 6 KQKHFVLVHGSNHG--AWCW-YKVKPQLEAAGHRVTALDLTASGI---DMKK----IQ-DVHSFYEYNE--PLLEILASL 72 (171)
Q Consensus 6 ~~~~vv~lHG~~~~--~~~~-~~~~~~l~~~g~~v~~~d~~g~g~---s~~~----~~-~~~~~~~~~~--~~~~~i~~~ 72 (171)
+++.|+|++=.... .+.| +...+.+.+.|+.+..++...--. .... .. ....+-+..+ .+.+.|+..
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~ 109 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREA 109 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHH
Confidence 35678888866533 3333 446667778899988887652100 0000 00 0001111111 123334333
Q ss_pred CCCCcEEEEEeChhHHHHHHH
Q 030815 73 SADEKVVIVGHSLGGLSLALA 93 (171)
Q Consensus 73 ~~~~~~~lvG~S~Gg~~a~~~ 93 (171)
-.....++|.|.|+.++..-
T Consensus 110 -~~~G~~~~G~SAGAii~~~~ 129 (233)
T PRK05282 110 -VKNGTPYIGWSAGANVAGPT 129 (233)
T ss_pred -HHCCCEEEEECHHHHhhhcc
Confidence 12337899999999875554
No 341
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=33.27 E-value=82 Score=24.57 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=28.3
Q ss_pred CeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEec
Q 030815 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALD 41 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d 41 (171)
.++++..|..++...+-.+++.|.++|++|...-
T Consensus 2 rIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t 35 (401)
T cd03784 2 RVLITTIGSRGDVQPLVALAWALRAAGHEVRVAT 35 (401)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEee
Confidence 3566778888888889999999999999988663
No 342
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=33.26 E-value=56 Score=22.79 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=43.0
Q ss_pred EEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCcccc--c---cccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 10 FVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQ--D---VHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 10 vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~--~---~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
=|++-|.|++..+-+.++..|..+ |..-.+-+|....+....- . .+..+ .-+.+.++.+ ...-=+|+|.|
T Consensus 43 Kvl~cGNGgSaadAqHfaael~gR-f~~eR~~lpaIaLt~dsS~lTai~NDy~yd---~vFsRqveA~-g~~GDvLigIS 117 (176)
T COG0279 43 KVLACGNGGSAADAQHFAAELTGR-FEKERPSLPAIALSTDSSVLTAIANDYGYD---EVFSRQVEAL-GQPGDVLIGIS 117 (176)
T ss_pred EEEEECCCcchhhHHHHHHHHhhH-HHhcCCCCCeeEeecccHHHhhhhccccHH---HHHHHHHHhc-CCCCCEEEEEe
Confidence 356678999988888999988776 7666666666555432210 0 01222 2233455555 23333677777
Q ss_pred hhHH
Q 030815 85 LGGL 88 (171)
Q Consensus 85 ~Gg~ 88 (171)
.-|.
T Consensus 118 TSGN 121 (176)
T COG0279 118 TSGN 121 (176)
T ss_pred CCCC
Confidence 6653
No 343
>PLN02840 tRNA dimethylallyltransferase
Probab=33.13 E-value=2.7e+02 Score=22.64 Aligned_cols=75 Identities=9% Similarity=0.164 Sum_probs=40.9
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhC-CCeEEEecC----CCCCC-CC-----------------ccccccccHHHhH
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAA-GHRVTALDL----TASGI-DM-----------------KKIQDVHSFYEYN 62 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~v~~~d~----~g~g~-s~-----------------~~~~~~~~~~~~~ 62 (171)
.+..+|++-|-.++..+ .++..|++. +..++..|- ++.-- +. .++...++..++.
T Consensus 19 ~~~~vi~I~GptgsGKT--tla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~ 96 (421)
T PLN02840 19 KKEKVIVISGPTGAGKS--RLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF 96 (421)
T ss_pred cCCeEEEEECCCCCCHH--HHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence 44567777777665543 233444433 445666663 22211 01 1122346788888
Q ss_pred HHHHHHHHhc-CCCCcEEEEE
Q 030815 63 EPLLEILASL-SADEKVVIVG 82 (171)
Q Consensus 63 ~~~~~~i~~~-~~~~~~~lvG 82 (171)
++....|+.+ ......+|||
T Consensus 97 ~~A~~~I~~i~~rgkiPIvVG 117 (421)
T PLN02840 97 DDARRATQDILNRGRVPIVAG 117 (421)
T ss_pred HHHHHHHHHHHhcCCCEEEEc
Confidence 8888888876 2334456665
No 344
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=33.00 E-value=1.7e+02 Score=23.48 Aligned_cols=56 Identities=14% Similarity=0.034 Sum_probs=33.5
Q ss_pred hHHHHHhC--CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 26 VKPQLEAA--GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 26 ~~~~l~~~--g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
+.+.+.++ -|.+|.+|-|.++++..... .-..++.+-+...++-+ ...-++++.-+
T Consensus 280 ~l~~~~~~g~~fDlIilDPPsF~r~k~~~~--~~~rdy~~l~~~~~~iL-~pgG~l~~~s~ 337 (393)
T COG1092 280 WLRKAERRGEKFDLIILDPPSFARSKKQEF--SAQRDYKDLNDLALRLL-APGGTLVTSSC 337 (393)
T ss_pred HHHHHHhcCCcccEEEECCcccccCcccch--hHHHHHHHHHHHHHHHc-CCCCEEEEEec
Confidence 44455443 49999999999999876652 23445555555555555 34444444433
No 345
>PRK02399 hypothetical protein; Provisional
Probab=32.97 E-value=1.3e+02 Score=24.13 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGID 48 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s 48 (171)
...++|-+-=+|....+...+.+.|.+.||.|+++.-.|.|..
T Consensus 184 ~~kp~Ig~TmfGvTtp~v~~~~~~Le~~GyEvlVFHATG~GGr 226 (406)
T PRK02399 184 DDKPLIGLTMFGVTTPCVQAAREELEARGYEVLVFHATGTGGR 226 (406)
T ss_pred CCCceEEEecCCCcHHHHHHHHHHHHhCCCeEEEEcCCCCchH
Confidence 3456666666777778889999999999999999999999854
No 346
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=32.86 E-value=1.1e+02 Score=22.17 Aligned_cols=31 Identities=35% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecC
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDL 42 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~ 42 (171)
...-+++.|.|-+.+ +..|+++|+.|+.+|+
T Consensus 37 ~~~rvLvPgCG~g~D-----~~~La~~G~~VvGvDl 67 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYD-----MLWLAEQGHDVVGVDL 67 (218)
T ss_dssp TSEEEEETTTTTSCH-----HHHHHHTTEEEEEEES
T ss_pred CCCeEEEeCCCChHH-----HHHHHHCCCeEEEEec
Confidence 344678888776655 3556778999999986
No 347
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=32.44 E-value=1.6e+02 Score=19.88 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=33.5
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLS 89 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~ 89 (171)
+.+.+.|.++||.|. |+ |.. . + ....+.+..+.+.+..-....-|.++|.-.|-.+
T Consensus 16 ~~l~~~L~~~G~eV~--D~-G~~---~---~-~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~si 71 (142)
T PRK08621 16 EVVKDYLEDNKYEVV--DV-TEE---G---A-EDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFM 71 (142)
T ss_pred HHHHHHHHHCCCEEE--EC-CCC---C---C-CCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhh
Confidence 457889999999885 44 221 1 1 2456667777776655423345666665555443
No 348
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.35 E-value=3.5e+02 Score=24.02 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCchhHHhhHHHHHhC-CCeEEEecC
Q 030815 9 HFVLVHGSNHGAWCWYKVKPQLEAA-GHRVTALDL 42 (171)
Q Consensus 9 ~vv~lHG~~~~~~~~~~~~~~l~~~-g~~v~~~d~ 42 (171)
-|+++||-.|-... .++..++++ ||.|+-++-
T Consensus 327 KilLL~GppGlGKT--TLAHViAkqaGYsVvEINA 359 (877)
T KOG1969|consen 327 KILLLCGPPGLGKT--TLAHVIAKQAGYSVVEINA 359 (877)
T ss_pred ceEEeecCCCCChh--HHHHHHHHhcCceEEEecc
Confidence 49999998654432 355555544 999998863
No 349
>PRK13938 phosphoheptose isomerase; Provisional
Probab=32.32 E-value=1.5e+02 Score=21.01 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=22.9
Q ss_pred CCCCcEEEEEeChhHHHHHHHHHhCC
Q 030815 73 SADEKVVIVGHSLGGLSLALAAEKFP 98 (171)
Q Consensus 73 ~~~~~~~lvG~S~Gg~~a~~~~~~~~ 98 (171)
....+++++|..-.+.++..++.+..
T Consensus 43 ~~g~rI~i~G~G~S~~~A~~fa~~L~ 68 (196)
T PRK13938 43 RAGARVFMCGNGGSAADAQHFAAELT 68 (196)
T ss_pred HCCCEEEEEeCcHHHHHHHHHHHHcC
Confidence 46699999999999999999998874
No 350
>PRK14974 cell division protein FtsY; Provisional
Probab=32.22 E-value=2.5e+02 Score=21.97 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=43.3
Q ss_pred HHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCC--cceeEEEE
Q 030815 29 QLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKFP--HKISVAIF 106 (171)
Q Consensus 29 ~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~--~~~~~~v~ 106 (171)
.....|+.++.+|-+|... .-..+.+.+..+.+.. ....+++|.-+.-|.-+...+..+. -.+.++|+
T Consensus 217 ~~~~~~~DvVLIDTaGr~~---------~~~~lm~eL~~i~~~~-~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMH---------TDANLMDELKKIVRVT-KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHhCCCCEEEEECCCccC---------CcHHHHHHHHHHHHhh-CCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 3344578899999886542 2344555666666655 4556677776666666666555542 35778876
Q ss_pred ec
Q 030815 107 LT 108 (171)
Q Consensus 107 ~~ 108 (171)
--
T Consensus 287 TK 288 (336)
T PRK14974 287 TK 288 (336)
T ss_pred ee
Confidence 54
No 351
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=32.11 E-value=61 Score=24.97 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=18.1
Q ss_pred CCCcEEEEEeChhHHHHHHHHH
Q 030815 74 ADEKVVIVGHSLGGLSLALAAE 95 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~ 95 (171)
...+..+.|||+|=+.|+.++.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 4678899999999888777764
No 352
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.57 E-value=1.7e+02 Score=20.06 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCCccee--EEEEecccc
Q 030815 60 EYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKFPHKIS--VAIFLTAFM 111 (171)
Q Consensus 60 ~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~--~~v~~~~~~ 111 (171)
+..+.+.+.|+.. ...++++| ||..---.++.++.+++. -++.+++.+
T Consensus 88 ~~~~~i~~~I~~~--~pdiv~vg--lG~PkQE~~~~~~~~~l~~~v~i~vG~~~ 137 (172)
T PF03808_consen 88 EEEEAIINRINAS--GPDIVFVG--LGAPKQERWIARHRQRLPAGVIIGVGGAF 137 (172)
T ss_pred hhHHHHHHHHHHc--CCCEEEEE--CCCCHHHHHHHHHHHHCCCCEEEEECchh
Confidence 3455556666655 45778887 555544444444433333 334444443
No 353
>PLN02735 carbamoyl-phosphate synthase
Probab=31.41 E-value=2.1e+02 Score=26.46 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=42.1
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCcc--ccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHh
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKK--IQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
-+.+..|++.|+.++.++......|... .+..+...-..+++.++++.. +.+ .++. ++||..++.++..
T Consensus 598 v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e-~~d-~Vi~--~~Ggq~~l~la~~ 668 (1102)
T PLN02735 598 CHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLE-RPD-GIIV--QFGGQTPLKLALP 668 (1102)
T ss_pred HHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHh-CCC-EEEE--CCCchHHHHHHHH
Confidence 3578899999999999987654444221 111222333477777777777 333 3443 5788777665554
No 354
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=31.30 E-value=2.6e+02 Score=21.98 Aligned_cols=64 Identities=17% Similarity=0.079 Sum_probs=36.4
Q ss_pred CCeEEEEcCCCCC---chhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHH
Q 030815 7 QKHFVLVHGSNHG---AWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILA 70 (171)
Q Consensus 7 ~~~vv~lHG~~~~---~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~ 70 (171)
+.-|+|++|-..+ .+.-....+.|.+.|+.|+.++..-+|...............++...+.+.
T Consensus 161 ~~~v~~f~gC~~~~~~p~~~~a~~~lL~~~G~~v~~~~~~CCG~p~~~~G~~~~~~~~~~~n~~~l~ 227 (396)
T PRK11168 161 KKQVAYFHGCYVNYNHPQLGKDLVKVLNAMGYEVLLPKEKCCGLPLIANGFLDKARKQAEFNVESLR 227 (396)
T ss_pred CCeEEEECccccccCCcHHHHHHHHHHHHCCCEEEcCCCCccChhHHhCcCHHHHHHHHHHHHHHHH
Confidence 3468899996643 333456778888889999666555556543322222233344444444443
No 355
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=30.91 E-value=1.1e+02 Score=19.08 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=22.0
Q ss_pred EEEEcCCCCCchhHHhhHHHHHhC-CCeEEEecC
Q 030815 10 FVLVHGSNHGAWCWYKVKPQLEAA-GHRVTALDL 42 (171)
Q Consensus 10 vv~lHG~~~~~~~~~~~~~~l~~~-g~~v~~~d~ 42 (171)
+|++.|..++..+- +++.|++. |+.++..|-
T Consensus 1 vI~I~G~~gsGKST--~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKST--LAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHH--HHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHH--HHHHHHHHHCCeEEEecc
Confidence 57888887766543 55666554 899988876
No 356
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=30.57 E-value=83 Score=22.66 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCCch-----hHHhhHHHHHhCCCeEEEe
Q 030815 6 KQKHFVLVHGSNHGAW-----CWYKVKPQLEAAGHRVTAL 40 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~-----~~~~~~~~l~~~g~~v~~~ 40 (171)
+++.|++.+|...... .|..+++.|.+.++.|+.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~ 143 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLL 143 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE-
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEE
Confidence 4567777777765333 3677888998888777765
No 357
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.11 E-value=2.8e+02 Score=21.98 Aligned_cols=77 Identities=16% Similarity=0.001 Sum_probs=46.0
Q ss_pred EEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHH
Q 030815 10 FVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLS 89 (171)
Q Consensus 10 vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~ 89 (171)
.+++.|...+..+...+++.+......|-.+.+--.+.+.... ...+..+.+.+.++.. .--+.+..|.|.-+
T Consensus 283 yvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~----ps~e~i~~F~~~L~~~---Gi~vtvR~~~G~di 355 (368)
T PRK14456 283 YMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEP----VCSSTRERFRDRLLDA---GLQVTVRKSYGTTI 355 (368)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCC----CCHHHHHHHHHHHHHC---CCcEEeeCCCCcch
Confidence 5788999999888889999987654444333332233222221 2233455555555544 55677788988765
Q ss_pred HHHH
Q 030815 90 LALA 93 (171)
Q Consensus 90 a~~~ 93 (171)
...+
T Consensus 356 ~aAC 359 (368)
T PRK14456 356 NAAC 359 (368)
T ss_pred hhcC
Confidence 5443
No 358
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=30.05 E-value=60 Score=26.15 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=20.0
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCc
Q 030815 75 DEKVVIVGHSLGGLSLALAAEKFPH 99 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~~~~ 99 (171)
..+-+++|-|.|+.+|..++..-++
T Consensus 100 l~p~vIsGTSaGAivAal~as~~~e 124 (421)
T cd07230 100 LLPRIISGSSAGSIVAAILCTHTDE 124 (421)
T ss_pred CCCCEEEEECHHHHHHHHHHcCCHH
Confidence 4455899999999999998875443
No 359
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=29.87 E-value=2.6e+02 Score=21.48 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=42.0
Q ss_pred eEEEEcCCCCCchhHHhhHHHHHhCCCeEEEec----CCCCCCCC------------------ccccccccHHHhHHHHH
Q 030815 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALD----LTASGIDM------------------KKIQDVHSFYEYNEPLL 66 (171)
Q Consensus 9 ~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d----~~g~g~s~------------------~~~~~~~~~~~~~~~~~ 66 (171)
.||++-|-+++..+- ++-.|++.+-.++..| |+|.--.+ ..+...++..++.++..
T Consensus 5 ~ii~I~GpTasGKS~--LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a~ 82 (300)
T PRK14729 5 KIVFIFGPTAVGKSN--ILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEAL 82 (300)
T ss_pred cEEEEECCCccCHHH--HHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHHH
Confidence 377888877665542 4444544444788877 34332111 12224468888888888
Q ss_pred HHHHhc-CCCCcEEEEE
Q 030815 67 EILASL-SADEKVVIVG 82 (171)
Q Consensus 67 ~~i~~~-~~~~~~~lvG 82 (171)
+.|+.+ ...+..++||
T Consensus 83 ~~i~~i~~~gk~PilvG 99 (300)
T PRK14729 83 KIIKELRQQKKIPIFVG 99 (300)
T ss_pred HHHHHHHHCCCCEEEEe
Confidence 888876 2334456776
No 360
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=29.87 E-value=1.8e+02 Score=19.80 Aligned_cols=59 Identities=10% Similarity=0.200 Sum_probs=35.3
Q ss_pred HhhHHHHHh--CCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHH
Q 030815 24 YKVKPQLEA--AGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSL 90 (171)
Q Consensus 24 ~~~~~~l~~--~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a 90 (171)
..+.+.|.+ +||.|+-+- .+. .. + ....+.+..+.+.+..-....-|.++|...|-.++
T Consensus 18 ~~l~~~L~~~~~g~eV~D~G--~~~---~~--~-~dYp~~a~~va~~V~~~~~~~GIliCGtGiG~sia 78 (151)
T PTZ00215 18 NEIIDYIKNKGKEYKIEDMG--TYT---AE--S-VDYPDFAEKVCEEVLKGEADTGILVCGSGIGISIA 78 (151)
T ss_pred HHHHHHHHhccCCCEEEEcC--CCC---CC--C-CCHHHHHHHHHHHHhcCCCcEEEEEcCCcHHHHHH
Confidence 357889999 899886442 111 11 1 24667777777777555233456777766665544
No 361
>PLN02555 limonoid glucosyltransferase
Probab=29.75 E-value=1.4e+02 Score=24.58 Aligned_cols=40 Identities=20% Similarity=0.132 Sum_probs=30.9
Q ss_pred CccccCCCeEEEEcCCC-CCchhHHhhHHHHHhCCCeEEEe
Q 030815 1 MAEAKKQKHFVLVHGSN-HGAWCWYKVKPQLEAAGHRVTAL 40 (171)
Q Consensus 1 ~~~~~~~~~vv~lHG~~-~~~~~~~~~~~~l~~~g~~v~~~ 40 (171)
|+++...+-||+++--+ ++...+-.+++.|+.+|+.|..+
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v 41 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFV 41 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEE
Confidence 67777788888888654 66777888999998888876554
No 362
>PRK05665 amidotransferase; Provisional
Probab=29.66 E-value=81 Score=23.18 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=26.4
Q ss_pred cHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHH
Q 030815 57 SFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAA 94 (171)
Q Consensus 57 ~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~ 94 (171)
....|...+.++|+.. -...+-++|.++|..+...++
T Consensus 72 ~~~pwi~~l~~~i~~~-~~~~~PilGIC~GhQlla~Al 108 (240)
T PRK05665 72 GTDPWIQTLKTYLLKL-YERGDKLLGVCFGHQLLALLL 108 (240)
T ss_pred ccchHHHHHHHHHHHH-HhcCCCEEEEeHHHHHHHHHh
Confidence 4456777777788776 223446899999999877775
No 363
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=29.16 E-value=1.4e+02 Score=22.03 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=26.8
Q ss_pred CeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEec
Q 030815 8 KHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALD 41 (171)
Q Consensus 8 ~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d 41 (171)
..|+++-|-|.+.-+=--++++|...|++|.++-
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEE
Confidence 4688888888776665578899998999988775
No 364
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.14 E-value=1.2e+02 Score=23.34 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=25.5
Q ss_pred HHHHHHHhc---CCCCcEEEEEeC--hhHHHHHHHHHhC
Q 030815 64 PLLEILASL---SADEKVVIVGHS--LGGLSLALAAEKF 97 (171)
Q Consensus 64 ~~~~~i~~~---~~~~~~~lvG~S--~Gg~~a~~~~~~~ 97 (171)
.+.+++++. ...+.+.++|.| +|..++.++..+.
T Consensus 145 aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~g 183 (301)
T PRK14194 145 GCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAH 183 (301)
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCC
Confidence 455566654 257889999997 9999999998653
No 365
>PRK06193 hypothetical protein; Provisional
Probab=28.96 E-value=1.1e+02 Score=21.98 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=21.3
Q ss_pred cHHHhHHHHHHHHHhc-CCCCcEEEEEeCh
Q 030815 57 SFYEYNEPLLEILASL-SADEKVVIVGHSL 85 (171)
Q Consensus 57 ~~~~~~~~~~~~i~~~-~~~~~~~lvG~S~ 85 (171)
+.+.+.+++.++|+.+ ...+.+.+|||..
T Consensus 136 ~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp 165 (206)
T PRK06193 136 RNALLKAGLRPLLTTPPDPGTNTVLVGHDD 165 (206)
T ss_pred hHHHHHHHHHHHHhhCCCCCCeEEEEeCch
Confidence 3455567788888887 3456799999995
No 366
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=28.93 E-value=47 Score=25.67 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=14.5
Q ss_pred EEEEEeChhHHHHHHHHH
Q 030815 78 VVIVGHSLGGLSLALAAE 95 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~ 95 (171)
-.++|||+|=+.|+.++.
T Consensus 126 ~~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 126 DVCAGLSLGEYTALVFAG 143 (343)
T ss_pred CeeeeccHHHHHHHHHhC
Confidence 368999999888877764
No 367
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=28.91 E-value=1.4e+02 Score=19.75 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=25.2
Q ss_pred eEEEEcCCCCCchh--HHhhHHHHHhCCCeEEEecCCCCCCC
Q 030815 9 HFVLVHGSNHGAWC--WYKVKPQLEAAGHRVTALDLTASGID 48 (171)
Q Consensus 9 ~vv~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~g~g~s 48 (171)
++|.+-|.-++.-+ -+.++..|.++|+++.++-.-.||..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~ 42 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQF 42 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCc
Confidence 46677776655443 46788899989999987766666544
No 368
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=28.89 E-value=3.1e+02 Score=22.38 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=33.1
Q ss_pred HHhhHHHHHhCCCeEEEecCCCCCCCCccc---cccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 23 WYKVKPQLEAAGHRVTALDLTASGIDMKKI---QDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 23 ~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
++.+.+.+.+...+++++|---.=.++.-. .......+.+..+.++.++. ...++++||=
T Consensus 157 ~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~--~i~~fiVGHV 219 (456)
T COG1066 157 LEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTK--NIAIFIVGHV 219 (456)
T ss_pred HHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHc--CCeEEEEEEE
Confidence 556777777777888888843222222211 11122334444444444444 5678999984
No 369
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=28.80 E-value=1.9e+02 Score=22.69 Aligned_cols=62 Identities=21% Similarity=0.139 Sum_probs=38.1
Q ss_pred chhHHhhHHHHHhC-CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHH-H-hc-CCCCcEEEEEeC-hh
Q 030815 20 AWCWYKVKPQLEAA-GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEIL-A-SL-SADEKVVIVGHS-LG 86 (171)
Q Consensus 20 ~~~~~~~~~~l~~~-g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i-~-~~-~~~~~~~lvG~S-~G 86 (171)
.+++..+++.+.+. |..++.++.+|+..+ .....+.....+.+.+ + .. .....|.|+|.+ ++
T Consensus 90 GdD~~~v~~~~~~~~~~~vi~v~~~gf~~~-----~~~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~ 156 (398)
T PF00148_consen 90 GDDIEAVARELQEEYGIPVIPVHTPGFSGS-----YSQGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLG 156 (398)
T ss_dssp TTTHHHHHHHHHHHHSSEEEEEE--TTSSS-----HHHHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBT
T ss_pred CCCHHHHHHHhhcccCCcEEEEECCCccCC-----ccchHHHHHHHHHhhcccccccCCCCceEEecCcCCC
Confidence 46678888888764 679999999998332 1123444445555544 2 22 345679999988 44
No 370
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=28.67 E-value=1.5e+02 Score=18.38 Aligned_cols=42 Identities=12% Similarity=0.220 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCCCchhHHhhHHHHHhC-CCeEEEecCCCCCCC
Q 030815 7 QKHFVLVHGSNHGAWCWYKVKPQLEAA-GHRVTALDLTASGID 48 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~v~~~d~~g~g~s 48 (171)
.+++|++.+-.+....+..-....+.. +-+++..+-.|||..
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s~lvt~~g~gHg~~ 76 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPGSRLVTVDGAGHGVY 76 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCCceEEEEeccCccee
Confidence 478999999877666554322222222 367788877788854
No 371
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=28.45 E-value=1.3e+02 Score=19.58 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLT 43 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 43 (171)
++.++|++.+.+.+.+....+.+.+.+.|..++.+.-.
T Consensus 61 ~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~it~~ 98 (153)
T cd05009 61 EGTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITDD 98 (153)
T ss_pred CCCcEEEEecCChhHHHHHHHHHHHHHcCCEEEEEecC
Confidence 34566666665555555677888888888888888654
No 372
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=28.17 E-value=2.6e+02 Score=21.00 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCchhHHhhHHHHHhCCCeEEE
Q 030815 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTA 39 (171)
Q Consensus 9 ~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~ 39 (171)
.+++++|.++....|..+.+.|.+.|+.+..
T Consensus 2 ~~~I~N~~~~~~~~~~~~~~~l~~~g~~~~v 32 (293)
T TIGR03702 2 ALLILNGKQADNEDVREAVGDLRDEGIQLHV 32 (293)
T ss_pred EEEEEeCCccchhHHHHHHHHHHHCCCeEEE
Confidence 4678888766666788888889888876443
No 373
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=27.98 E-value=2.7e+02 Score=21.15 Aligned_cols=57 Identities=25% Similarity=0.189 Sum_probs=29.4
Q ss_pred HhhHHHHHhCCCe--EEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHH
Q 030815 24 YKVKPQLEAAGHR--VTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLS 89 (171)
Q Consensus 24 ~~~~~~l~~~g~~--v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~ 89 (171)
...++.+.+.|.. -+.+|- |.|.+. +.++. -.+...++.+......+++|+|-=.++
T Consensus 166 ~~~i~~a~~~GI~~~~IilDP-GiGF~k-------~~~~n-~~ll~~l~~l~~lg~Pilvg~SRKsfi 224 (282)
T PRK11613 166 IEQIARCEAAGIAKEKLLLDP-GFGFGK-------NLSHN-YQLLARLAEFHHFNLPLLVGMSRKSMI 224 (282)
T ss_pred HHHHHHHHHcCCChhhEEEeC-CCCcCC-------CHHHH-HHHHHHHHHHHhCCCCEEEEecccHHH
Confidence 3445556667885 666774 666432 22222 222233333323356789999944443
No 374
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=27.81 E-value=62 Score=21.74 Aligned_cols=23 Identities=39% Similarity=0.372 Sum_probs=17.7
Q ss_pred CCCcEEEEEeChhHHHHHHHHHh
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
....-.++|-|.||.++..++..
T Consensus 25 ~~~~d~i~GtS~Gal~a~~~~~~ 47 (204)
T PF01734_consen 25 GERFDVISGTSAGALNAALLALG 47 (204)
T ss_dssp CCT-SEEEEECCHHHHHHHHHTC
T ss_pred CCCccEEEEcChhhhhHHHHHhC
Confidence 44556899999999999877765
No 375
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=27.66 E-value=79 Score=23.11 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=19.7
Q ss_pred EEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCC
Q 030815 10 FVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLT 43 (171)
Q Consensus 10 vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 43 (171)
-||+.|.|.+.+ +..|+++||.|+.+|+-
T Consensus 46 rvLvPgCGkg~D-----~~~LA~~G~~V~GvDlS 74 (226)
T PRK13256 46 VCLIPMCGCSID-----MLFFLSKGVKVIGIELS 74 (226)
T ss_pred eEEEeCCCChHH-----HHHHHhCCCcEEEEecC
Confidence 556666665543 34567789999999873
No 376
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=27.63 E-value=1.4e+02 Score=20.47 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 65 LLEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 65 ~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+.++.+.+...++|.++|....+.++..+..+.
T Consensus 20 ~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l 52 (179)
T TIGR03127 20 LDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRL 52 (179)
T ss_pred HHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHH
Confidence 344444443457999999887778887776654
No 377
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=27.59 E-value=1.4e+02 Score=19.06 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=21.9
Q ss_pred cEEEEE-eChhHHHHHHHHHhCCcceeEEEEec
Q 030815 77 KVVIVG-HSLGGLSLALAAEKFPHKISVAIFLT 108 (171)
Q Consensus 77 ~~~lvG-~S~Gg~~a~~~~~~~~~~~~~~v~~~ 108 (171)
++.|+| ..+.|.-.++++.++|. ++-+.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-~e~~~~~~ 32 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-FELVALVS 32 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-EEEEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-ccEEEeee
Confidence 578889 78888888888888775 44333333
No 378
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=27.54 E-value=70 Score=26.66 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=31.4
Q ss_pred hCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcE-----EEEEeChhHHHHHHHHHhC
Q 030815 32 AAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKV-----VIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 32 ~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~lvG~S~Gg~~a~~~~~~~ 97 (171)
.+|.+++.+|=-|.- .. ..-++.+-|+.+ ..++| .++|.|.||.+|..+...+
T Consensus 414 g~G~rILSiDGGGtr-------G~-----~~lqiL~kiekl-sgKpIheLFD~ICGvSTG~ilA~~Lg~k~ 471 (763)
T KOG4231|consen 414 GQGLRILSIDGGGTR-------GL-----ATLQILKKIEKL-SGKPIHELFDLICGVSTGGILAIALGVKL 471 (763)
T ss_pred CCceEEEEecCCCcc-------ch-----hHHHHHHHHHHh-cCCcHHHHHHHHhccCchHHHHHHHHhcC
Confidence 457777777733221 11 122334444555 34443 4799999999999987654
No 379
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=27.47 E-value=2.7e+02 Score=22.41 Aligned_cols=76 Identities=12% Similarity=0.045 Sum_probs=43.6
Q ss_pred CCeEEEEcCCCCC---chhHHhhHHHHHhC--CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc-CCCCcEEE
Q 030815 7 QKHFVLVHGSNHG---AWCWYKVKPQLEAA--GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL-SADEKVVI 80 (171)
Q Consensus 7 ~~~vv~lHG~~~~---~~~~~~~~~~l~~~--g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l 80 (171)
+|-+|++.....+ .++...+++.+.++ |..|+.+.-+|+..+ .....+...+.+.+.+... .....+++
T Consensus 97 ~P~~I~V~tTC~~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~-----~~~G~~~~~~alv~~~~~~~~~~~~Vni 171 (427)
T PRK02842 97 NISVLFLVGSCPSEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETT-----FTQGEDAVLAALVPFCPEAPADHPSLVL 171 (427)
T ss_pred CCCEEEEECCChHHhhcCCHHHHHHHhhcccCCCeEEEeeCCCcccc-----HHHHHHHHHHHHhhhcccccCCCCcEEE
Confidence 5667777776533 46678888888766 778888888877432 1112233333333333221 13456788
Q ss_pred EEeChhH
Q 030815 81 VGHSLGG 87 (171)
Q Consensus 81 vG~S~Gg 87 (171)
+|.-.-+
T Consensus 172 iG~~~~~ 178 (427)
T PRK02842 172 VGSLADV 178 (427)
T ss_pred EEeCCcc
Confidence 8854433
No 380
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=27.39 E-value=1.1e+02 Score=24.42 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=20.4
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCC
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFP 98 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~ 98 (171)
+..+-++.|-|.|+.+|..++..-+
T Consensus 109 gl~p~~i~GtS~Gaivaa~~a~~~~ 133 (391)
T cd07229 109 GLLPRIITGTATGALIAALVGVHTD 133 (391)
T ss_pred CCCCceEEEecHHHHHHHHHHcCCH
Confidence 4566689999999999999988543
No 381
>PRK06849 hypothetical protein; Provisional
Probab=27.14 E-value=3.1e+02 Score=21.52 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=35.6
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCc---------cccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMK---------KIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS 84 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S 84 (171)
..+++.|.+.|++|+..|......+.. .+....+.+.+.+.+.++++.. + -.+++-+.+
T Consensus 18 l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~-~-id~vIP~~e 85 (389)
T PRK06849 18 LELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRE-N-IDLLIPTCE 85 (389)
T ss_pred HHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHc-C-CCEEEECCh
Confidence 468899999999999998764322110 0001124456777777777776 3 344555444
No 382
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=27.04 E-value=3.3e+02 Score=21.84 Aligned_cols=63 Identities=11% Similarity=0.331 Sum_probs=36.1
Q ss_pred CchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHH
Q 030815 19 GAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGL 88 (171)
Q Consensus 19 ~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~ 88 (171)
+.-+|..+.+.+... .+++.++ |+.|+++.+.. +++ ..+.+.++++.. ....+++|=-++|=.
T Consensus 140 g~~D~~~i~~~~~~~-tk~v~IQ-RSrGYs~R~sl---~i~-~I~~~i~~vk~~-~p~~iifVDNCYGEF 202 (403)
T PF06838_consen 140 GTIDWEAIKKALKPN-TKMVLIQ-RSRGYSWRPSL---TIE-EIKEIIKFVKEI-NPDVIIFVDNCYGEF 202 (403)
T ss_dssp SSB-HHHHHHHHHTT-EEEEEEE--S-TTSSS-------HH-HHHHHHHHHHHH--TTSEEEEE-TTTTT
T ss_pred CCcCHHHHHHhhccC-ceEEEEe-cCCCCCCCCCC---CHH-HHHHHHHHHHhh-CCCeEEEEeCCccee
Confidence 344588888888854 6666664 67777766652 333 345556677777 566788887777743
No 383
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=27.03 E-value=2.8e+02 Score=20.90 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=42.4
Q ss_pred HHHHHh-CCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEE-EEeChhHHHHHHHHHhC-CcceeE
Q 030815 27 KPQLEA-AGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVI-VGHSLGGLSLALAAEKF-PHKISV 103 (171)
Q Consensus 27 ~~~l~~-~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l-vG~S~Gg~~a~~~~~~~-~~~~~~ 103 (171)
.+.+.+ .++.++.+|-+|... .-.+..+.+.++++.. ....++| +.-++++.-+...+.++ .-.+.+
T Consensus 146 l~~l~~~~~~D~ViIDt~Gr~~---------~~~~~l~el~~~~~~~-~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~ 215 (270)
T PRK06731 146 LTYFKEEARVDYILIDTAGKNY---------RASETVEEMIETMGQV-EPDYICLTLSASMKSKDMIEIITNFKDIHIDG 215 (270)
T ss_pred HHHHHhcCCCCEEEEECCCCCc---------CCHHHHHHHHHHHhhh-CCCeEEEEEcCccCHHHHHHHHHHhCCCCCCE
Confidence 334433 368899999887542 1233455555666655 3334454 44466777777777765 345788
Q ss_pred EEEec
Q 030815 104 AIFLT 108 (171)
Q Consensus 104 ~v~~~ 108 (171)
+|+--
T Consensus 216 ~I~TK 220 (270)
T PRK06731 216 IVFTK 220 (270)
T ss_pred EEEEe
Confidence 87643
No 384
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=26.65 E-value=58 Score=24.72 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=15.1
Q ss_pred EEEEeChhHHHHHHHHH
Q 030815 79 VIVGHSLGGLSLALAAE 95 (171)
Q Consensus 79 ~lvG~S~Gg~~a~~~~~ 95 (171)
.++|-|.||.+|..++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 58899999999999875
No 385
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=26.56 E-value=1.1e+02 Score=23.63 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=22.9
Q ss_pred EEEEcCC---CCCchhHHhhHHHHHhCCCeEEEec
Q 030815 10 FVLVHGS---NHGAWCWYKVKPQLEAAGHRVTALD 41 (171)
Q Consensus 10 vv~lHG~---~~~~~~~~~~~~~l~~~g~~v~~~d 41 (171)
|+++|.. ||.......+++.|.+.|+.|..+-
T Consensus 3 Il~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~ 37 (392)
T cd03805 3 VAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYT 37 (392)
T ss_pred EEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEc
Confidence 5666643 3334556789999999999987763
No 386
>PLN02204 diacylglycerol kinase
Probab=26.50 E-value=4.1e+02 Score=22.75 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=25.6
Q ss_pred ccCCCeEEEEcCCCCC---chhHHhhHHHHHhCCCeEEE
Q 030815 4 AKKQKHFVLVHGSNHG---AWCWYKVKPQLEAAGHRVTA 39 (171)
Q Consensus 4 ~~~~~~vv~lHG~~~~---~~~~~~~~~~l~~~g~~v~~ 39 (171)
...+..+||+|..++. ...|..+.+.|...++.+.+
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v 195 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKV 195 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEE
Confidence 3455678999987654 34688889999887776443
No 387
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=26.46 E-value=2.4e+02 Score=20.69 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCCCchh---HHhhHHHHHhCCCeEEEecC
Q 030815 7 QKHFVLVHGSNHGAWC---WYKVKPQLEAAGHRVTALDL 42 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~---~~~~~~~l~~~g~~v~~~d~ 42 (171)
++.|.|++=.+..... .+...+.|.+.|..+..+++
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l 70 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHL 70 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeec
Confidence 5678888866654432 35677788888888877765
No 388
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=26.39 E-value=3e+02 Score=21.03 Aligned_cols=78 Identities=22% Similarity=0.271 Sum_probs=43.5
Q ss_pred hHHHHH-hCCCeEEEecCCCCCCCC--ccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHH-----HHhC
Q 030815 26 VKPQLE-AAGHRVTALDLTASGIDM--KKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALA-----AEKF 97 (171)
Q Consensus 26 ~~~~l~-~~g~~v~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~-----~~~~ 97 (171)
+++.+. ++|.+|++.-++--..+. -+... +--.+..+.+.+.++......++.|+=|+-||.+.... ..++
T Consensus 39 ~i~~ie~kr~srvI~~Ihrqe~~~~~giPi~~-~I~i~dse~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l~~~ 117 (285)
T PF01972_consen 39 LIREIEEKRGSRVITLIHRQERVSFLGIPIYR-YIDIDDSEFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARALREH 117 (285)
T ss_pred HHHHHHHHhCCEEEEEEEeccccceeccccce-eEcHhhHHHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHHHhC
Confidence 444553 358999988665211111 11111 11123455567777766566788899999999865433 3455
Q ss_pred CcceeEE
Q 030815 98 PHKISVA 104 (171)
Q Consensus 98 ~~~~~~~ 104 (171)
+.++..+
T Consensus 118 ~~~v~v~ 124 (285)
T PF01972_consen 118 PAKVTVI 124 (285)
T ss_pred CCCEEEE
Confidence 5554443
No 389
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=26.26 E-value=2.1e+02 Score=19.28 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=33.7
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLS 89 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~ 89 (171)
+.+.+.|.++||.|+-+ |... + .+..+.+..+.+.+..-....-|.++|.-.|-.+
T Consensus 16 ~~i~~~L~~~G~eV~D~---G~~~------~-~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~si 71 (141)
T TIGR01118 16 DVIKNFLVDNGFEVIDV---TEGD------G-QDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSFM 71 (141)
T ss_pred HHHHHHHHHCCCEEEEc---CCCC------C-CCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHhh
Confidence 35788999999988543 2211 1 2456677777777655523345667765555443
No 390
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=26.26 E-value=1.2e+02 Score=24.44 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCcce
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFPHKI 101 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~ 101 (171)
+..+-+++|-|.|+.++..++.+-++.+
T Consensus 93 gllp~iI~GtSAGAivaalla~~t~~el 120 (407)
T cd07232 93 DLLPNVISGTSGGSLVAALLCTRTDEEL 120 (407)
T ss_pred CCCCCEEEEECHHHHHHHHHHcCCHHHH
Confidence 3456679999999999999988544333
No 391
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=26.25 E-value=2.3e+02 Score=19.79 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=33.4
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSL 90 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a 90 (171)
..+.+.|.+.||.|+-+- .+. .. + .+..+.+..+...+..-....-|.++|.-.|-.++
T Consensus 16 ~~l~~~L~~~G~eV~D~G--~~~--~~---~-~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~sia 74 (171)
T PRK12615 16 MAVSDFLKSKGYDVIDCG--TYD--HT---R-THYPIFGKKVGEAVVNGQADLGVCICGTGVGINNA 74 (171)
T ss_pred HHHHHHHHHCCCEEEEcC--CCC--CC---C-CChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHH
Confidence 357889999999885432 111 11 1 24566777777777555233445666555554443
No 392
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=26.22 E-value=2.3e+02 Score=19.74 Aligned_cols=37 Identities=8% Similarity=-0.102 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCCCc---hhHHhhHHHHHhCCCeEEEecC
Q 030815 6 KQKHFVLVHGSNHGA---WCWYKVKPQLEAAGHRVTALDL 42 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~---~~~~~~~~~l~~~g~~v~~~d~ 42 (171)
.+.++++++.+.... ...+.-.+.|.+.|+.++-|+.
T Consensus 111 ~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~ 150 (177)
T TIGR02113 111 PETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKE 150 (177)
T ss_pred CCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCc
Confidence 355788888765433 2356677788888999988864
No 393
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.22 E-value=1.5e+02 Score=22.63 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=25.3
Q ss_pred HHHHHHHHhc---CCCCcEEEEEeC--hhHHHHHHHHHh
Q 030815 63 EPLLEILASL---SADEKVVIVGHS--LGGLSLALAAEK 96 (171)
Q Consensus 63 ~~~~~~i~~~---~~~~~~~lvG~S--~Gg~~a~~~~~~ 96 (171)
..+.+++++. ...+++.++|.| ||..++.+++.+
T Consensus 143 ~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~ 181 (296)
T PRK14188 143 LGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA 181 (296)
T ss_pred HHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC
Confidence 3455566654 267889999977 899999999865
No 394
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=26.11 E-value=1.6e+02 Score=22.35 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCCc-----hhHHhhHHHHHhCCCeEEE
Q 030815 7 QKHFVLVHGSNHGA-----WCWYKVKPQLEAAGHRVTA 39 (171)
Q Consensus 7 ~~~vv~lHG~~~~~-----~~~~~~~~~l~~~g~~v~~ 39 (171)
++.+++.||..... +.|..+++.+.+.|++++.
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl 215 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKL 215 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEE
Confidence 45677788875432 2467788888877888765
No 395
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=25.63 E-value=1.4e+02 Score=21.76 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.3
Q ss_pred cEEEEEeChhHHHHHHHHHhCC
Q 030815 77 KVVIVGHSLGGLSLALAAEKFP 98 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~ 98 (171)
.-.++|-|.|+.++..++....
T Consensus 30 ~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 30 TTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred CCEEEEEcHHHHHHHHHHcCCC
Confidence 4579999999999999987653
No 396
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=25.56 E-value=99 Score=22.47 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCCcEEEEEeChhHHHHHHHH
Q 030815 65 LLEILASLSADEKVVIVGHSLGGLSLALAA 94 (171)
Q Consensus 65 ~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~ 94 (171)
+...++.+.....++++|+|+.=.-...++
T Consensus 169 ~~~~l~~ll~~~~~LFiG~S~~D~~i~~ll 198 (242)
T cd01406 169 ATKFLKSDLEKYTVLFIGYSLTDPNIRYLL 198 (242)
T ss_pred HHHHHHHHHhcCcEEEEEcCCCCCcHHHHH
Confidence 345555553568899999998855444443
No 397
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=25.50 E-value=1.4e+02 Score=20.11 Aligned_cols=19 Identities=21% Similarity=0.057 Sum_probs=16.5
Q ss_pred CcEEEEEeChhHHHHHHHH
Q 030815 76 EKVVIVGHSLGGLSLALAA 94 (171)
Q Consensus 76 ~~~~lvG~S~Gg~~a~~~~ 94 (171)
..-.+.|.|.|+.++..++
T Consensus 28 ~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 28 CVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred CCCEEEEEcHHHHHHHHHh
Confidence 5568889999999999887
No 398
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=25.50 E-value=3.4e+02 Score=21.42 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=35.9
Q ss_pred CeEEEEcCCCCCc---hhHHhhHHHHHhCCCeEEEec-CCCCCCCCccccccccHHHhHHHHHHHHH
Q 030815 8 KHFVLVHGSNHGA---WCWYKVKPQLEAAGHRVTALD-LTASGIDMKKIQDVHSFYEYNEPLLEILA 70 (171)
Q Consensus 8 ~~vv~lHG~~~~~---~~~~~~~~~l~~~g~~v~~~d-~~g~g~s~~~~~~~~~~~~~~~~~~~~i~ 70 (171)
..|+|+.|-..+. ..-+..++.|.+.|+.|+.+. ...+|...............++...+.+.
T Consensus 162 ~~V~~f~gC~~~~~~~~~~~a~v~vL~~~G~~v~~~~~~~CCG~p~~~~G~~~~~~~~a~~n~~~l~ 228 (397)
T TIGR03379 162 RQVAYFHGCYVNYNHPQLGKDLVKVLNAMNIGVQLLEKEKCCGVPLIANGFPDKAKKQAQFNVKQIE 228 (397)
T ss_pred CcEEEeCCcccccCChHHHHHHHHHHHHCCcEEEeCCCCCccCccHHhCCCHHHHHHHHHHHHHHHH
Confidence 4588888864432 334667888888999998875 44556543332222233344444444443
No 399
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=25.49 E-value=1.5e+02 Score=22.04 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=24.1
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEE
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVT 38 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~ 38 (171)
+.+++.|+-||+|+.+..- ..|.|...|-+++
T Consensus 56 ~g~~v~v~StGIGgPSaaI--AvEEL~~lGa~tf 87 (248)
T COG2820 56 NGKPVTVCSTGIGGPSAAI--AVEELARLGAKTF 87 (248)
T ss_pred cCeEEEEEecCCCCchHHH--HHHHHHhcCCeEE
Confidence 3578899999999877643 4577777787766
No 400
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=25.49 E-value=1.8e+02 Score=20.06 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=29.0
Q ss_pred eEEEEcCCCCCchh--HHhhHHHHHhCCCeEEEecCCCCC
Q 030815 9 HFVLVHGSNHGAWC--WYKVKPQLEAAGHRVTALDLTASG 46 (171)
Q Consensus 9 ~vv~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~g~g 46 (171)
.|+=+=|+-++... -..+++.|.++||+|-++-+.+|+
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 45666676555433 578999999999999999888887
No 401
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=25.48 E-value=2.2e+02 Score=19.16 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=40.1
Q ss_pred hHHHHHhCCC-eEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeC-hhHHHHHHHHHhCC
Q 030815 26 VKPQLEAAGH-RVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHS-LGGLSLALAAEKFP 98 (171)
Q Consensus 26 ~~~~l~~~g~-~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S-~Gg~~a~~~~~~~~ 98 (171)
+.+.+...|. +++.++.+.. ..+..+.+.+.+.+.++.. ...++++|++ .|.-++..++.++.
T Consensus 50 l~~~l~~~G~d~v~~~~~~~~--------~~~~~~~~a~~l~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~ 114 (164)
T PF01012_consen 50 LRKALAKYGADKVYHIDDPAL--------AEYDPEAYADALAELIKEE--GPDLVLFGSTSFGRDLAPRLAARLG 114 (164)
T ss_dssp HHHHHHSTTESEEEEEE-GGG--------TTC-HHHHHHHHHHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT
T ss_pred HhhhhhhcCCcEEEEecCccc--------cccCHHHHHHHHHHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhC
Confidence 4445554665 5777665422 1236777888888888886 3458888876 56668888877754
No 402
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=25.34 E-value=1.8e+02 Score=23.05 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCCC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTASG 46 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g 46 (171)
.+.+.++.-...+....+..+++.|.+.||.|..+...+.+
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~ 43 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETP 43 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCC
Confidence 34555555555555555667899999999999888665443
No 403
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=24.98 E-value=2.2e+02 Score=22.17 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=40.9
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEE-eChhHHHHHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVG-HSLGGLSLALA 93 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG-~S~Gg~~a~~~ 93 (171)
...++.+.+.|++.+++++| ..+...+..+.+.++.. ...++++.| .|+|+.-.-..
T Consensus 8 ~~~i~~I~~~~~krV~LQfP------------dgLl~~a~~ia~~l~~~-~~~~v~IlaD~~YGaCcvdd~ 65 (332)
T TIGR00322 8 EKVIGNIRKYNAKRVGLQMP------------EGLKIRALEIAEIIEQF-CGVETVISGDTSFGACDIDDF 65 (332)
T ss_pred HHHHHHHHHcCCCEEEEECC------------HHHHHHHHHHHHHHHhc-cCceEEEEcCCceecCCCCHH
Confidence 46778888899999999887 25677777777888765 345555555 88998755333
No 404
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=24.87 E-value=1.8e+02 Score=21.75 Aligned_cols=26 Identities=35% Similarity=0.248 Sum_probs=18.1
Q ss_pred HHHhHHHHHHHHHhc-CCCCcEEEEEe
Q 030815 58 FYEYNEPLLEILASL-SADEKVVIVGH 83 (171)
Q Consensus 58 ~~~~~~~~~~~i~~~-~~~~~~~lvG~ 83 (171)
...+.+++.+.|+.. ....+++|++|
T Consensus 195 ~~~Ql~WL~~~L~~a~~~~~~v~I~~H 221 (296)
T cd00842 195 PAGQLQWLEDELQEAEQAGEKVWIIGH 221 (296)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 356667777777765 23568899998
No 405
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.85 E-value=1.5e+02 Score=22.60 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=25.4
Q ss_pred HHHHHHHhc---CCCCcEEEEEeC--hhHHHHHHHHHhC
Q 030815 64 PLLEILASL---SADEKVVIVGHS--LGGLSLALAAEKF 97 (171)
Q Consensus 64 ~~~~~i~~~---~~~~~~~lvG~S--~Gg~~a~~~~~~~ 97 (171)
.+.+++++. ...+.+.++|.| +|..++.+++.+.
T Consensus 144 avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~g 182 (284)
T PRK14179 144 GIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKN 182 (284)
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCC
Confidence 345556554 257889999997 8999999998653
No 406
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=24.55 E-value=1.5e+02 Score=17.06 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=6.9
Q ss_pred cEEEEEeChhHH
Q 030815 77 KVVIVGHSLGGL 88 (171)
Q Consensus 77 ~~~lvG~S~Gg~ 88 (171)
+++++|-++-|.
T Consensus 1 ~vvViGgG~ig~ 12 (80)
T PF00070_consen 1 RVVVIGGGFIGI 12 (80)
T ss_dssp EEEEESSSHHHH
T ss_pred CEEEECcCHHHH
Confidence 467787444444
No 407
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=24.54 E-value=61 Score=20.64 Aligned_cols=14 Identities=7% Similarity=-0.005 Sum_probs=6.7
Q ss_pred HhhHHHHHhCCCeE
Q 030815 24 YKVKPQLEAAGHRV 37 (171)
Q Consensus 24 ~~~~~~l~~~g~~v 37 (171)
+.+.+...+.|...
T Consensus 64 e~I~~ia~~~g~~~ 77 (110)
T PF00289_consen 64 EAIIDIARKEGADA 77 (110)
T ss_dssp HHHHHHHHHTTESE
T ss_pred HHHhhHhhhhcCcc
Confidence 34555555554443
No 408
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=24.49 E-value=1.4e+02 Score=23.20 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=18.6
Q ss_pred CCCcEEEEEeChhHHHHHHHHHh
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
+..+-++.|-|.|+.++..++..
T Consensus 94 gl~p~~i~GsSaGAivaa~~~~~ 116 (323)
T cd07231 94 QLLPRVIAGSSVGSIVCAIIATR 116 (323)
T ss_pred CCCCCEEEEECHHHHHHHHHHcC
Confidence 44556799999999999988763
No 409
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.40 E-value=1.7e+02 Score=22.52 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=25.6
Q ss_pred CCeEEEEcC-CCCC-----chhHHhhHHHHHhCCCeEEEec
Q 030815 7 QKHFVLVHG-SNHG-----AWCWYKVKPQLEAAGHRVTALD 41 (171)
Q Consensus 7 ~~~vv~lHG-~~~~-----~~~~~~~~~~l~~~g~~v~~~d 41 (171)
++.|++.|| ..+. .+.|..+++.+.++|+.|+.+-
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g 215 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFG 215 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 477888888 3322 2357889999999998887763
No 410
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=24.20 E-value=95 Score=22.27 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=21.6
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCcce---eEEEEeccc
Q 030815 75 DEKVVIVGHSLGGLSLALAAEKFPHKI---SVAIFLTAF 110 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~~~~~~---~~~v~~~~~ 110 (171)
.+-+++.| |||.....++.+.++.. ..+| +.|.
T Consensus 67 ~d~ivIAG--MGG~lI~~ILe~~~~~~~~~~~lI-LqP~ 102 (205)
T PF04816_consen 67 VDTIVIAG--MGGELIIEILEAGPEKLSSAKRLI-LQPN 102 (205)
T ss_dssp --EEEEEE--E-HHHHHHHHHHTGGGGTT--EEE-EEES
T ss_pred CCEEEEec--CCHHHHHHHHHhhHHHhccCCeEE-EeCC
Confidence 45688887 99999999999887653 4444 4443
No 411
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=24.08 E-value=78 Score=23.84 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=17.2
Q ss_pred EEEEEeChhHHHHHHHHHhC
Q 030815 78 VVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~~ 97 (171)
=.++|-|.||.++..++...
T Consensus 36 D~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 36 DLFAGTSAGSLIALGLALGY 55 (288)
T ss_pred eEEEEeCHHHHHHHHHHcCc
Confidence 48899999999999998654
No 412
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=24.04 E-value=1.7e+02 Score=21.91 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=22.2
Q ss_pred HHhhHHHHHhCCCeEEEecCCCCCCCC
Q 030815 23 WYKVKPQLEAAGHRVTALDLTASGIDM 49 (171)
Q Consensus 23 ~~~~~~~l~~~g~~v~~~d~~g~g~s~ 49 (171)
+...++.|++.|.+|..+|..|.|.++
T Consensus 59 f~amve~L~~~GvdV~ifddtg~~~TP 85 (318)
T COG4874 59 FNAMVEGLRQAGVDVVIFDDTGQGETP 85 (318)
T ss_pred HHHHHHHHHhcCceEEEeecCCCCCCC
Confidence 445788899999999999998887664
No 413
>PRK07933 thymidylate kinase; Validated
Probab=23.96 E-value=2.6e+02 Score=19.97 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=28.0
Q ss_pred EEEEcCCCCCc--hhHHhhHHHHHhCCCeEEEecCCCCCC
Q 030815 10 FVLVHGSNHGA--WCWYKVKPQLEAAGHRVTALDLTASGI 47 (171)
Q Consensus 10 vv~lHG~~~~~--~~~~~~~~~l~~~g~~v~~~d~~g~g~ 47 (171)
+|.+=|.-++. ..-+.+++.|...|+.|+....|.+|.
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~ 41 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGR 41 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 45666765444 335678999999999999998886653
No 414
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.88 E-value=1.6e+02 Score=20.14 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=21.9
Q ss_pred HHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 65 LLEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 65 ~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+.++.+.+...++|.++|....+.++..+..++
T Consensus 23 l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l 55 (179)
T cd05005 23 LDKLISAILNAKRIFVYGAGRSGLVAKAFAMRL 55 (179)
T ss_pred HHHHHHHHHhCCeEEEEecChhHHHHHHHHHHH
Confidence 333444443458899999877777777776654
No 415
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=23.72 E-value=3.6e+02 Score=21.12 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=38.9
Q ss_pred hHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHH
Q 030815 22 CWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLS 89 (171)
Q Consensus 22 ~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~ 89 (171)
+|+.+...+.++ .+++.++ |+.|.++.+.. ++++ .+.+..+++.. ...-+++|--++|-.+
T Consensus 154 D~~~v~~~i~~~-tkli~IQ-RS~GY~~RpS~---~I~e-I~~~i~~vk~i-npn~ivFVDNCYGEFv 214 (416)
T COG4100 154 DIQAVKTAISDR-TKLIGIQ-RSKGYAWRPSL---SIAE-IEEMITFVKEI-NPNVIVFVDNCYGEFV 214 (416)
T ss_pred cHHHHHHhcCcc-ceEEEEE-eccCcCCCCcc---cHHH-HHHHHHHHHhc-CCCEEEEEeccchhhh
Confidence 577777777765 7777775 57777766653 3333 34455666666 5566777777777554
No 416
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=23.69 E-value=1.8e+02 Score=17.48 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=24.6
Q ss_pred cHHHhHHHHHHHHHhc---CCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 57 SFYEYNEPLLEILASL---SADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 57 ~~~~~~~~~~~~i~~~---~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
..+..+++-.+.++.. ...+++.++|-|.|=.+|.+.+..+
T Consensus 18 GC~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 18 GCARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp HHHHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh
Confidence 3444455444444443 3557899999999977776665543
No 417
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=23.62 E-value=79 Score=24.68 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.8
Q ss_pred EEEEeChhHHHHHHHHHh
Q 030815 79 VIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 79 ~lvG~S~Gg~~a~~~~~~ 96 (171)
.+.|-|.||.+|..++..
T Consensus 44 lIaGTStGgIIAa~la~g 61 (344)
T cd07217 44 FVGGTSTGSIIAACIALG 61 (344)
T ss_pred EEEEecHHHHHHHHHHcC
Confidence 788999999999999864
No 418
>PRK03846 adenylylsulfate kinase; Provisional
Probab=23.61 E-value=2.2e+02 Score=19.86 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=24.7
Q ss_pred cCCCeEEEEcCCCCCchh--HHhhHHHHHhCCCeEEEec
Q 030815 5 KKQKHFVLVHGSNHGAWC--WYKVKPQLEAAGHRVTALD 41 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~d 41 (171)
+.++.+|.+.|..++..+ -+.+...|...|+.++.+|
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 356778888897666543 4456666666677777665
No 419
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=23.54 E-value=2.1e+02 Score=20.17 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCc-hhHHhhHHHHHhCCCeEEEecC
Q 030815 9 HFVLVHGSNHGA-WCWYKVKPQLEAAGHRVTALDL 42 (171)
Q Consensus 9 ~vv~lHG~~~~~-~~~~~~~~~l~~~g~~v~~~d~ 42 (171)
.||+.-|..... ......++.|++.|..++++-.
T Consensus 135 vIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGi 169 (193)
T cd01477 135 VIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAF 169 (193)
T ss_pred EEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 344445654333 4466778889999999998844
No 420
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=23.40 E-value=1.8e+02 Score=19.80 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=21.8
Q ss_pred EEEcCCCCCchh--HHhhHHHHHhCCCeEEEecCC
Q 030815 11 VLVHGSNHGAWC--WYKVKPQLEAAGHRVTALDLT 43 (171)
Q Consensus 11 v~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~ 43 (171)
.+..+-||...+ -..++..|+++|++|+.+|.-
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D 36 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLD 36 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEES
T ss_pred EEEcCCCCccHHHHHHHHHhccccccccccccccC
Confidence 344444544433 346888999999999999873
No 421
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.29 E-value=2.1e+02 Score=21.17 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCC
Q 030815 6 KQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLT 43 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 43 (171)
..+..|++-|...+.- =..++..|.+.||.|++-.++
T Consensus 5 ~~~k~VlItgcs~GGI-G~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGI-GYALAKEFARNGYLVYATARR 41 (289)
T ss_pred cCCCeEEEeecCCcch-hHHHHHHHHhCCeEEEEEccc
Confidence 3455666666543332 236888999999999987543
No 422
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=23.27 E-value=63 Score=21.21 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=19.3
Q ss_pred CCCchhHHhhHHHHHhCCCeEEEecCC
Q 030815 17 NHGAWCWYKVKPQLEAAGHRVTALDLT 43 (171)
Q Consensus 17 ~~~~~~~~~~~~~l~~~g~~v~~~d~~ 43 (171)
||.......+++.|.+.|++|..+-..
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~ 38 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPG 38 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 444455678999999999998887433
No 423
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=23.10 E-value=2.1e+02 Score=22.30 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCCchh-----HHhhHHHHHhCCCeEEE
Q 030815 7 QKHFVLVHGSNHGAWC-----WYKVKPQLEAAGHRVTA 39 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~-----~~~~~~~l~~~g~~v~~ 39 (171)
..+++++.|+|+.+.. +..+.+.|.++|..+..
T Consensus 248 ~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~~i~i~~ 285 (323)
T COG2376 248 DEVAVLVNGLGATPLMELYILYNRVARLLAAKGITIER 285 (323)
T ss_pred CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 6789999999987653 67788899888877653
No 424
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=23.04 E-value=1.2e+02 Score=23.93 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=25.0
Q ss_pred CCcEEEEEeChhHHHHHHHHH-hCCcceeEEEEec
Q 030815 75 DEKVVIVGHSLGGLSLALAAE-KFPHKISVAIFLT 108 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~-~~~~~~~~~v~~~ 108 (171)
..+++++|-|.||.-++.... ..|..+..-|++.
T Consensus 156 ~~~iV~IGaStGGp~AL~~il~~lP~~~p~pvvIv 190 (350)
T COG2201 156 ARKIVAIGASTGGPAALRAVLPALPADFPAPVVIV 190 (350)
T ss_pred CccEEEEEeCCCCHHHHHHHHHhCCCCCCCCEEEE
Confidence 346999999999999988754 5677666444444
No 425
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=22.99 E-value=3.2e+02 Score=20.21 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=14.5
Q ss_pred HHhhHHHHHhCCC--eEEEecCCCCCC
Q 030815 23 WYKVKPQLEAAGH--RVTALDLTASGI 47 (171)
Q Consensus 23 ~~~~~~~l~~~g~--~v~~~d~~g~g~ 47 (171)
.+..++.+.+.|. .-+.+| ||.|.
T Consensus 152 ~~~~i~~~~~~Gi~~~~IilD-Pg~g~ 177 (258)
T cd00423 152 LEERVEAATEAGIPPEDIILD-PGIGF 177 (258)
T ss_pred HHHHHHHHHHcCCCHHHEEEe-CCCCc
Confidence 3455666667784 356667 56664
No 426
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=22.91 E-value=1.4e+02 Score=20.91 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=19.1
Q ss_pred EEEcCCCCCchhHHhhHHHHHhCCCeEEEecCC
Q 030815 11 VLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLT 43 (171)
Q Consensus 11 v~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 43 (171)
|.+.|+|--.. .++..|++.|+.|+.+|.-
T Consensus 3 I~ViGlGyvGl---~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 3 IAVIGLGYVGL---PLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEE--STTHH---HHHHHHHHTTSEEEEE-S-
T ss_pred EEEECCCcchH---HHHHHHHhCCCEEEEEeCC
Confidence 34446664443 5778899999999999864
No 427
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=22.90 E-value=2.7e+02 Score=19.44 Aligned_cols=62 Identities=10% Similarity=-0.025 Sum_probs=35.5
Q ss_pred CCCeEEEEcCCCCCc---hhHHhhHHHHHhCCCeEEEecCCCC---CCCCccccccccHHHhHHHHHHHHH
Q 030815 6 KQKHFVLVHGSNHGA---WCWYKVKPQLEAAGHRVTALDLTAS---GIDMKKIQDVHSFYEYNEPLLEILA 70 (171)
Q Consensus 6 ~~~~vv~lHG~~~~~---~~~~~~~~~l~~~g~~v~~~d~~g~---g~s~~~~~~~~~~~~~~~~~~~~i~ 70 (171)
.+.++|+++-+.... ..++.-.+.|++.|+.|+-+. +|+ |..... ...+.++.++.+...+.
T Consensus 112 ~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~-~g~la~~~~g~g--~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 112 ATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPK-EGLLACGDEGYG--ALADIETILETIENTLK 179 (182)
T ss_pred CCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCC-CCccccCCccCC--CCCCHHHHHHHHHHHhc
Confidence 355677777544322 234556677888899988776 232 332222 22366666666665543
No 428
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=22.84 E-value=2e+02 Score=21.14 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=22.3
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCC--cceeEEEEecccc
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFP--HKISVAIFLTAFM 111 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~--~~~~~~v~~~~~~ 111 (171)
+.+++.+.||-||-.-...+..++- -.++.+|-++.+.
T Consensus 54 KGk~iSvmg~GmGipS~sIY~~ELi~~y~Vk~iIRvGt~G 93 (236)
T COG0813 54 KGKKISVMGHGMGIPSISIYSRELITDYGVKKIIRVGTCG 93 (236)
T ss_pred cCcEEEEEEecCCCccHHHHHHHHHHHhCcceEEEEEccc
Confidence 6778888888888554444443321 1256666555544
No 429
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.66 E-value=3.6e+02 Score=20.74 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=23.5
Q ss_pred CchhHHhhHHHHHhCCCeEE-EecCCCCCCC
Q 030815 19 GAWCWYKVKPQLEAAGHRVT-ALDLTASGID 48 (171)
Q Consensus 19 ~~~~~~~~~~~l~~~g~~v~-~~d~~g~g~s 48 (171)
+..+++.+++..+++|.+|+ -+|.|||-.+
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a 110 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHSLA 110 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHHHH
Confidence 55668889999999999886 5799998544
No 430
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.63 E-value=1.6e+02 Score=22.27 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=25.6
Q ss_pred eEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecC
Q 030815 9 HFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDL 42 (171)
Q Consensus 9 ~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~ 42 (171)
.++..+..||.......+++.|.+.|+.|..+..
T Consensus 4 ~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~ 37 (371)
T cd04962 4 GIVCYPTYGGSGVVATELGKALARRGHEVHFITS 37 (371)
T ss_pred eEEEEeCCCCccchHHHHHHHHHhcCCceEEEec
Confidence 3444456677777788999999999998887754
No 431
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=22.62 E-value=2.5e+02 Score=18.91 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=34.3
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSL 90 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a 90 (171)
+.+.+.|.++||.|+-+ |. . + .+..+++..+.+.+..-....-|.++|.-.|-.++
T Consensus 16 ~~l~~~L~~~g~eV~D~---G~-~------~-~dypd~a~~va~~V~~~e~~~GIliCGtGiG~sia 71 (141)
T PRK12613 16 ELIKSFLQEEGYDIIDV---TD-I------N-SDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMV 71 (141)
T ss_pred HHHHHHHHHCCCEEEEc---CC-C------C-CChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhh
Confidence 35788999999988543 21 1 1 25666777777777555333457777655554443
No 432
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=22.59 E-value=1.5e+02 Score=22.78 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=18.0
Q ss_pred CCcEEEEEeChhHHHHHHHHHh
Q 030815 75 DEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 75 ~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
..+-++.|-|.|+.++..++..
T Consensus 96 l~~~~i~GtSaGAi~aa~~~~~ 117 (298)
T cd07206 96 LLPRVISGSSAGAIVAALLGTH 117 (298)
T ss_pred CCCCEEEEEcHHHHHHHHHHcC
Confidence 4456799999999999988753
No 433
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=5.6e+02 Score=23.02 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=52.8
Q ss_pred CeEEEec-----CCCCCCCCccccccccHHHhHHHHHHHHHhcC--CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEe
Q 030815 35 HRVTALD-----LTASGIDMKKIQDVHSFYEYNEPLLEILASLS--ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFL 107 (171)
Q Consensus 35 ~~v~~~d-----~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~ 107 (171)
-.||-+| -|..|.+...- .-++..+-++.+.++-+. ..+.++++|-..=--+ +.=+...|.|+++++.+
T Consensus 765 PCVIFFDELDSlAP~RG~sGDSG---GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL-LDpALLRPGRFDKLvyv 840 (953)
T KOG0736|consen 765 PCVIFFDELDSLAPNRGRSGDSG---GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL-LDPALLRPGRFDKLVYV 840 (953)
T ss_pred CeEEEeccccccCccCCCCCCcc---ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc-cChhhcCCCccceeEEe
Confidence 4466665 23344443222 257778888888888883 5678999985432221 12234458899999999
Q ss_pred ccccCCCCCChhHHHHHHhhcCC
Q 030815 108 TAFMPDTKHQPSYVVERFFERIP 130 (171)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~ 130 (171)
++.-... ......+.+.+...
T Consensus 841 G~~~d~e--sk~~vL~AlTrkFk 861 (953)
T KOG0736|consen 841 GPNEDAE--SKLRVLEALTRKFK 861 (953)
T ss_pred cCCccHH--HHHHHHHHHHHHcc
Confidence 9765322 33344555544443
No 434
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=22.38 E-value=1.1e+02 Score=18.41 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=15.9
Q ss_pred HHhhHHHHHhCCCeEEEec
Q 030815 23 WYKVKPQLEAAGHRVTALD 41 (171)
Q Consensus 23 ~~~~~~~l~~~g~~v~~~d 41 (171)
...+.+.|.++||.|+.++
T Consensus 10 Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLE 28 (80)
T ss_pred chHHHHHHHHCCCEEEecC
Confidence 3468899999999998875
No 435
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=22.31 E-value=81 Score=16.16 Aligned_cols=9 Identities=44% Similarity=0.973 Sum_probs=7.4
Q ss_pred CCeEEEEcC
Q 030815 7 QKHFVLVHG 15 (171)
Q Consensus 7 ~~~vv~lHG 15 (171)
...++++||
T Consensus 32 p~~vilVHG 40 (43)
T PF07521_consen 32 PRKVILVHG 40 (43)
T ss_dssp SSEEEEESS
T ss_pred CCEEEEecC
Confidence 467999998
No 436
>PRK03094 hypothetical protein; Provisional
Probab=22.17 E-value=1.2e+02 Score=18.30 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=15.4
Q ss_pred HHhhHHHHHhCCCeEEEec
Q 030815 23 WYKVKPQLEAAGHRVTALD 41 (171)
Q Consensus 23 ~~~~~~~l~~~g~~v~~~d 41 (171)
...+.+.|.++||.|+-+.
T Consensus 10 Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred cHHHHHHHHHCCCEEEecC
Confidence 3468899999999998764
No 437
>PRK06696 uridine kinase; Validated
Probab=22.13 E-value=3e+02 Score=19.68 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=26.9
Q ss_pred cCCCeEEEEcCCCCCchh--HHhhHHHHHhCCCeEEEe
Q 030815 5 KKQKHFVLVHGSNHGAWC--WYKVKPQLEAAGHRVTAL 40 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~ 40 (171)
+..|.+|.+-|..++..+ -+.+++.|.+.|..++.+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~ 56 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRA 56 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457889999998777654 356788887778777764
No 438
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.09 E-value=2.1e+02 Score=23.10 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCC
Q 030815 63 EPLLEILASLSADEKVVIVGHSLGGLSLALAAEKFP 98 (171)
Q Consensus 63 ~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~ 98 (171)
+|+.+++..+ ..+++.++|.-..|.-+..++.+..
T Consensus 3 ~~~~~~~~~~-~~~~i~v~G~G~sG~a~a~~L~~~G 37 (458)
T PRK01710 3 RDFNEFKKFI-KNKKVAVVGIGVSNIPLIKFLVKLG 37 (458)
T ss_pred chHHHHhhhh-cCCeEEEEcccHHHHHHHHHHHHCC
Confidence 4566777777 5678999999999997777776654
No 439
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=22.06 E-value=1.8e+02 Score=21.29 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=17.8
Q ss_pred EEEEEeChhHHHHHHHHHhCC
Q 030815 78 VVIVGHSLGGLSLALAAEKFP 98 (171)
Q Consensus 78 ~~lvG~S~Gg~~a~~~~~~~~ 98 (171)
-.++|-|.|+.++..++...+
T Consensus 33 ~~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 33 RRIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred CEEEEEcHHHHHHHHHHhCCC
Confidence 389999999999999887653
No 440
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=22.04 E-value=4.3e+02 Score=21.37 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=29.6
Q ss_pred cHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhCCccee
Q 030815 57 SFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLALAAEKFPHKIS 102 (171)
Q Consensus 57 ~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~ 102 (171)
+.+++.+.+...++.. +..+-+++ .-||.++..+..+.++...
T Consensus 95 ~~~~y~~~~~~~l~~~-~~~p~~i~--DdGg~~~~~~~~~~~~~~~ 137 (413)
T cd00401 95 TLEEYWWCIEQALKFP-DGEPNMIL--DDGGDLTLLIHKKHPELLP 137 (413)
T ss_pred CHHHHHHHHHHHHhcc-CCCCcEEE--ecchHHHHHHHhhhhhhhh
Confidence 5677777777777765 34565665 7899988888776654433
No 441
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.88 E-value=3.5e+02 Score=20.30 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=55.8
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCC-eEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEE-EE
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGH-RVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVI-VG 82 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~-~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l-vG 82 (171)
+.+.||++--|..++.+.|...++.+...|- .++.. .+|. ...+ .+...+.--.....++.. -.-+|.+ ..
T Consensus 132 ~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~-~rG~--~t~~---~Y~~~~vdl~~i~~lk~~-~~~pV~~D~s 204 (266)
T PRK13398 132 KTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLC-ERGI--RTFE---TYTRNTLDLAAVAVIKEL-SHLPIIVDPS 204 (266)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEE-ECCC--CCCC---CCCHHHHHHHHHHHHHhc-cCCCEEEeCC
Confidence 4467899999999999999999999987766 44444 3442 1111 122222222233344444 2456777 79
Q ss_pred eChh-----HHHHHHHHHhCCcceeEEEEecccc
Q 030815 83 HSLG-----GLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 83 ~S~G-----g~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
||.| ..+ ..++.... ..|+++..=+.
T Consensus 205 Hs~G~~~~v~~~-~~aAva~G--a~Gl~iE~H~~ 235 (266)
T PRK13398 205 HATGRRELVIPM-AKAAIAAG--ADGLMIEVHPE 235 (266)
T ss_pred CcccchhhHHHH-HHHHHHcC--CCEEEEeccCC
Confidence 9998 333 23333333 46676655433
No 442
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=21.70 E-value=1.4e+02 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=28.2
Q ss_pred cCCCeEEEEcCCCCCc----------hhHHhhHHHHHhCCCeEEEec
Q 030815 5 KKQKHFVLVHGSNHGA----------WCWYKVKPQLEAAGHRVTALD 41 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~----------~~~~~~~~~l~~~g~~v~~~d 41 (171)
+++.+|++.|...... ..+....+.|.+.||.++..+
T Consensus 46 ~~~~~VLmYH~V~d~~~~~~~~~Vspe~Fe~QL~~Lk~nGY~~VSL~ 92 (672)
T PRK14581 46 KNTFVVIAYHDVEDDSADQRYLSVRSSALNEQFVWLRDNGYHVVSVD 92 (672)
T ss_pred CCceEEEEeCcccCCCCccCccccCHHHHHHHHHHHHHCcCEEecHH
Confidence 4567899999986432 346777888889999999885
No 443
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=21.61 E-value=1.6e+02 Score=22.74 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=25.6
Q ss_pred cCCCeEEEEcCCCCCchh--HHhhHHHHHhCCCeEEEe
Q 030815 5 KKQKHFVLVHGSNHGAWC--WYKVKPQLEAAGHRVTAL 40 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~ 40 (171)
.++|++|++-|+.|+... .+.+..++.++....+++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYvi 53 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVI 53 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEE
Confidence 357889999999877643 577888887765544444
No 444
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=21.57 E-value=3.2e+02 Score=19.77 Aligned_cols=63 Identities=13% Similarity=0.003 Sum_probs=35.6
Q ss_pred CCeEEEEcCCCCCchh---HHhhHHHHHhCCCeEEEecCC--CCCCCCccccccccHHHhHHHHHHHHHh
Q 030815 7 QKHFVLVHGSNHGAWC---WYKVKPQLEAAGHRVTALDLT--ASGIDMKKIQDVHSFYEYNEPLLEILAS 71 (171)
Q Consensus 7 ~~~vv~lHG~~~~~~~---~~~~~~~l~~~g~~v~~~d~~--g~g~s~~~~~~~~~~~~~~~~~~~~i~~ 71 (171)
+.++++++.+....+. .+.-.+.|++.|+.|+.+..- .+|.. ........++..+.+..++..
T Consensus 132 ~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~lAcg~~--G~Grm~ep~~I~~~i~~~l~~ 199 (209)
T PLN02496 132 SKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGDY--GNGAMAEPSLIYSTVRLFLES 199 (209)
T ss_pred CCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcCcccCCCc--CCCCCCCHHHHHHHHHHHHhh
Confidence 4578888877654432 344567788889999877432 12222 111233555555555555544
No 445
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=21.52 E-value=2.5e+02 Score=19.25 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=20.9
Q ss_pred HHHHHHHHhc---CCCCcEEEEEeC--hhHHHHHHHHHh
Q 030815 63 EPLLEILASL---SADEKVVIVGHS--LGGLSLALAAEK 96 (171)
Q Consensus 63 ~~~~~~i~~~---~~~~~~~lvG~S--~Gg~~a~~~~~~ 96 (171)
+.+.+++++. ...+++.++|.| .|-.++..+..+
T Consensus 21 ~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~ 59 (160)
T PF02882_consen 21 LAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK 59 (160)
T ss_dssp HHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC
Confidence 3444455543 367899999999 566677766665
No 446
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=21.34 E-value=4.8e+02 Score=21.62 Aligned_cols=61 Identities=13% Similarity=0.033 Sum_probs=36.3
Q ss_pred CCeEEEEcCCCCC---chhHHhhHHHHHhCCCeEEEecCC---CCCCCCccccccccHHHhHHHHHHHH
Q 030815 7 QKHFVLVHGSNHG---AWCWYKVKPQLEAAGHRVTALDLT---ASGIDMKKIQDVHSFYEYNEPLLEIL 69 (171)
Q Consensus 7 ~~~vv~lHG~~~~---~~~~~~~~~~l~~~g~~v~~~d~~---g~g~s~~~~~~~~~~~~~~~~~~~~i 69 (171)
+.++++++.+... ....+.-.+.|.+.|+.|+-|+.- .+|..... .....++.++.+...+
T Consensus 180 ~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~g~lA~~g~~G~G--rm~e~~~I~~~v~~~~ 246 (475)
T PRK13982 180 NRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEMAERGEAGVG--RMAEPLEIAAAAEALL 246 (475)
T ss_pred CCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCCcCCC--CCCCHHHHHHHHHHHH
Confidence 4578888877655 233456677788889999877641 13333222 2235566666666555
No 447
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=21.29 E-value=3.9e+02 Score=20.60 Aligned_cols=75 Identities=13% Similarity=-0.020 Sum_probs=38.9
Q ss_pred EEcCCCCCchhHH---hhHHHHHhCCCeEEEe---cCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeCh
Q 030815 12 LVHGSNHGAWCWY---KVKPQLEAAGHRVTAL---DLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSL 85 (171)
Q Consensus 12 ~lHG~~~~~~~~~---~~~~~l~~~g~~v~~~---d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~ 85 (171)
++-|+.|.+++++ .+++.+.+.|...+.+ |-+.|-..+..+ + .++..+.+.++++.....+--+++|-|=
T Consensus 3 vIEGFYG~PWs~e~R~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~---Y-p~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 3 VIEGFYGRPWSHEDRLDLIRFLGRYKMNTYIYAPKDDPYHRSKWREP---Y-PEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp EEE-SSSS---HHHHHHHHHHHHHTT--EEEE--TT-TTTTTTTTS-------HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred ceeCcCCCCCCHHHHHHHHHHHHHcCCceEEECCCCChHHHhhhccc---C-CHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 4678888888775 4667778888887766 334444333322 1 2344566666666654445667778787
Q ss_pred hHHHH
Q 030815 86 GGLSL 90 (171)
Q Consensus 86 Gg~~a 90 (171)
|..+.
T Consensus 79 g~~~~ 83 (306)
T PF07555_consen 79 GLDIC 83 (306)
T ss_dssp TTT--
T ss_pred ccccc
Confidence 76653
No 448
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=21.18 E-value=2.7e+02 Score=21.50 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=36.1
Q ss_pred CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChh----HHHHHHHHHhC
Q 030815 34 GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLG----GLSLALAAEKF 97 (171)
Q Consensus 34 g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~G----g~~a~~~~~~~ 97 (171)
|-..+..|+||+|+..........+....+.+...-+.+ .....++--|-+ =.+.+.++.++
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nL--v~~FLLvd~sv~i~~~D~~~i~~~ge~ 247 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENL--VRVFLLVDASVPIQPTDNPEIAWLGEN 247 (320)
T ss_pred cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhh--heeeeeeeccCCCCCCChHHHHHHhhc
Confidence 445678899999988766544445555555554444444 234455555554 23556666664
No 449
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=21.01 E-value=2.3e+02 Score=19.08 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=24.9
Q ss_pred EEEcCCCCCchh--HHhhHHHHHhCCCeEEEecCCCCC
Q 030815 11 VLVHGSNHGAWC--WYKVKPQLEAAGHRVTALDLTASG 46 (171)
Q Consensus 11 v~lHG~~~~~~~--~~~~~~~l~~~g~~v~~~d~~g~g 46 (171)
+.+-|..++..+ -..++..+.++|++|..+..-.++
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~ 39 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHD 39 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 445576555544 367888888889999888765444
No 450
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=20.96 E-value=2.8e+02 Score=18.81 Aligned_cols=57 Identities=19% Similarity=0.122 Sum_probs=31.6
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGG 87 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg 87 (171)
..+.+.|.++||.|+-+- .+. ..+ .....+++..+.+.+..-....-|.++|.-.|-
T Consensus 16 ~~l~~~L~~~g~eV~D~G--~~~--~~~---~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~ 72 (148)
T TIGR02133 16 EALWLDLAAHEPEVCDVG--VYD--ADD---DDDYPCFCIAAAEAVARDAADLGIVIGGSGNGE 72 (148)
T ss_pred HHHHHHHHHCCCEEEECC--CCC--CCC---CCCchHHHHHHHHHHhcCCCceEEEEcCCChhh
Confidence 357889999999875432 111 111 124566777777766554233346666544443
No 451
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=20.89 E-value=3.7e+02 Score=20.14 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=27.7
Q ss_pred eEEEEcCCCCCchh--HHhhHHHHHhCC--CeEEEecCCCCCC
Q 030815 9 HFVLVHGSNHGAWC--WYKVKPQLEAAG--HRVTALDLTASGI 47 (171)
Q Consensus 9 ~vv~lHG~~~~~~~--~~~~~~~l~~~g--~~v~~~d~~g~g~ 47 (171)
++|++-|+..+..+ -..+.+.|.++| +.|+.+|-...|.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~ 44 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGI 44 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCC
Confidence 68888999866544 457888888876 4677777665553
No 452
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=20.87 E-value=1.7e+02 Score=18.03 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=22.5
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCcceeEEEEecccc
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEKFPHKISVAIFLTAFM 111 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~~~v~~~~~~ 111 (171)
...++.++| ||.++..-+...-+.=..+.++++..
T Consensus 6 ~~~~vlVvG---gG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVG---GGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEE---ESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEEC---CCHHHHHHHHHHHhCCCEEEEECCch
Confidence 467889998 45666666655444346777888765
No 453
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=20.87 E-value=3.1e+02 Score=21.44 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=27.1
Q ss_pred cCCCeEEEEcCCCCCchh-----HHhhHHHHHhCCCeEEEe
Q 030815 5 KKQKHFVLVHGSNHGAWC-----WYKVKPQLEAAGHRVTAL 40 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~-----~~~~~~~l~~~g~~v~~~ 40 (171)
.....++++.|+|+.... ++.+.+.|.++|+.+...
T Consensus 251 ~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~gi~v~r~ 291 (329)
T TIGR02363 251 SGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQRGVNVART 291 (329)
T ss_pred CCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 345789999999977643 567888888888886644
No 454
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=20.85 E-value=3.9e+02 Score=20.46 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCCCcEEEEEeChhH
Q 030815 64 PLLEILASLSADEKVVIVGHSLGG 87 (171)
Q Consensus 64 ~~~~~i~~~~~~~~~~lvG~S~Gg 87 (171)
.+...++.. +.-..+++=||+||
T Consensus 78 ~ir~~~E~c-D~~~gf~i~~slgG 100 (328)
T cd00286 78 IIRKEAEEC-DSLQGFFITHSLGG 100 (328)
T ss_pred HHHHHHHhC-CCccceEEEeecCC
Confidence 333444444 44556777788876
No 455
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=20.80 E-value=2.2e+02 Score=18.84 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=10.1
Q ss_pred HHHHHHHHHhCCcceeEE
Q 030815 87 GLSLALAAEKFPHKISVA 104 (171)
Q Consensus 87 g~~a~~~~~~~~~~~~~~ 104 (171)
|.-++....++|++++-+
T Consensus 11 G~qtLdVi~~~~d~f~v~ 28 (129)
T PF02670_consen 11 GTQTLDVIRKHPDKFEVV 28 (129)
T ss_dssp HHHHHHHHHHCTTTEEEE
T ss_pred HHHHHHHHHhCCCceEEE
Confidence 344566666666655443
No 456
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=20.65 E-value=1.4e+02 Score=24.54 Aligned_cols=43 Identities=21% Similarity=0.134 Sum_probs=29.9
Q ss_pred CeEEEEcCCCC----CchhHHhhHHHHHhCCCeEEEecCCCCCCCCc
Q 030815 8 KHFVLVHGSNH----GAWCWYKVKPQLEAAGHRVTALDLTASGIDMK 50 (171)
Q Consensus 8 ~~vv~lHG~~~----~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~ 50 (171)
.-||+++|+|. .+..-.++.+.|+++|.+|----+|=-|+-+.
T Consensus 308 ~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG 354 (463)
T PF02233_consen 308 KKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVAGRMPG 354 (463)
T ss_dssp SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTT
T ss_pred CceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCC
Confidence 35899999883 23345688999999999987666776666554
No 457
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=20.59 E-value=90 Score=24.36 Aligned_cols=30 Identities=13% Similarity=-0.017 Sum_probs=24.2
Q ss_pred CchhHHhhHHHHHhCCCeEE-EecCCCCCCC
Q 030815 19 GAWCWYKVKPQLEAAGHRVT-ALDLTASGID 48 (171)
Q Consensus 19 ~~~~~~~~~~~l~~~g~~v~-~~d~~g~g~s 48 (171)
+..+++.+++..+++|..|+ -+|.|||..+
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a 98 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTGS 98 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhHH
Confidence 45668889999999999876 5799998755
No 458
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=20.58 E-value=2.8e+02 Score=21.54 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=34.9
Q ss_pred ccHHHhHHHHHHHHHhc----CCCCcEEEEEeChhHHHHHHHHHhCC--cceeEEEEecccc
Q 030815 56 HSFYEYNEPLLEILASL----SADEKVVIVGHSLGGLSLALAAEKFP--HKISVAIFLTAFM 111 (171)
Q Consensus 56 ~~~~~~~~~~~~~i~~~----~~~~~~~lvG~S~Gg~~a~~~~~~~~--~~~~~~v~~~~~~ 111 (171)
+.++..+..-.+..+.. +..+++.++|-|.|=.++.+.+..+. ..--|+.+.-|..
T Consensus 18 ~GCe~nV~~QI~y~k~~gp~~ngPKkVLviGaSsGyGLa~RIsaaFG~gAdTiGVffE~pgt 79 (398)
T COG3007 18 YGCEANVLQQIDYVKAAGPIKNGPKKVLVIGASSGYGLAARISAAFGPGADTIGVFFERPGT 79 (398)
T ss_pred ccHHHHHHHHHHHHHhcCCccCCCceEEEEecCCcccHHHHHHHHhCCCCceeeEEeecCCc
Confidence 45555554444444444 36778999999999777777766553 2244555555544
No 459
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=20.53 E-value=2.8e+02 Score=18.67 Aligned_cols=33 Identities=18% Similarity=0.003 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCC----CchhHHhhHHHHHhCCCeEE
Q 030815 6 KQKHFVLVHGSNH----GAWCWYKVKPQLEAAGHRVT 38 (171)
Q Consensus 6 ~~~~vv~lHG~~~----~~~~~~~~~~~l~~~g~~v~ 38 (171)
+..+|++-|+..+ ....+..+++.|...||.-+
T Consensus 16 k~vvVv~~~~~~~~~~l~~~s~~~l~~eL~~~GYSyl 52 (146)
T PF04763_consen 16 KNVVVVCNHSWPGPESLPPESVSLLIEELEESGYSYL 52 (146)
T ss_pred CcEEEEEeCCcccccCCChHHHHHHHHHHhhcCCceE
Confidence 3445667788653 45668889999999998633
No 460
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=20.53 E-value=3.4e+02 Score=19.63 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=37.4
Q ss_pred CchhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhc-CCCCcEEEEEeChh
Q 030815 19 GAWCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASL-SADEKVVIVGHSLG 86 (171)
Q Consensus 19 ~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~lvG~S~G 86 (171)
+..+.-.+++.|+=. -.|..+|=|... --.+++..+...++.+ ...+.+++|-|-||
T Consensus 156 GQQQR~aIARaLame-P~vmLFDEPTSA----------LDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 156 GQQQRVAIARALAME-PEVMLFDEPTSA----------LDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred hHHHHHHHHHHHhcC-CceEeecCCccc----------CCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 344455677777654 778888766321 1235667777777776 35677999999987
No 461
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=20.48 E-value=2.2e+02 Score=19.69 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=32.8
Q ss_pred hhHHhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhH
Q 030815 21 WCWYKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGG 87 (171)
Q Consensus 21 ~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg 87 (171)
..++.+...+.+ +..|+.+|.. .+-.+++.+.++.......+++++|---|
T Consensus 10 ~d~~~L~~~l~~-~~~v~~ld~~---------------~d~~~qI~~~L~~~~~i~~lhivsHG~~G 60 (165)
T PF14252_consen 10 EDYESLLAGLPP-GVEVVILDPS---------------RDGLEQIAQALAGYQNIDALHIVSHGSPG 60 (165)
T ss_pred CCHHHHHhcCcC-CCEEEEEeCC---------------CchHHHHHHHHhcCCCCceEEEEcCCCcc
Confidence 446666666655 5778887642 22255666666666567889999886433
No 462
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.47 E-value=3.7e+02 Score=20.06 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=31.1
Q ss_pred cCCCeEEEEcCCCCCchhHHhhHHHHHhCCCeEEEecCCCC
Q 030815 5 KKQKHFVLVHGSNHGAWCWYKVKPQLEAAGHRVTALDLTAS 45 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~ 45 (171)
+.+.||++--|...+.+.|...++.+.+.|-.=+.+=.||.
T Consensus 120 ~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~ 160 (250)
T PRK13397 120 HIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGV 160 (250)
T ss_pred ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc
Confidence 45678999999889999999999999988764333334443
No 463
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=20.44 E-value=2.4e+02 Score=19.29 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=35.4
Q ss_pred CCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHH
Q 030815 34 GHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLS 89 (171)
Q Consensus 34 g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~ 89 (171)
.-+++++|+-|-= .....+.+-+.+..++......+.|++-=-|-||+|
T Consensus 97 ~~r~~VldF~Gdi-------~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~V 145 (155)
T PF08496_consen 97 KPRLFVLDFKGDI-------KASEVESLREEISAILSVATPEDEVLVRLESPGGMV 145 (155)
T ss_pred CCeEEEEecCCCc-------cHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCcee
Confidence 3789999987532 123566777777788877766788888888888875
No 464
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=20.43 E-value=3e+02 Score=18.87 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=35.5
Q ss_pred HhhHHHHHhCCCeEEEecCCCCCCCCccccccccHHHhHHHHHHHHHhcCCCCcEEEEEeChhHHHHH
Q 030815 24 YKVKPQLEAAGHRVTALDLTASGIDMKKIQDVHSFYEYNEPLLEILASLSADEKVVIVGHSLGGLSLA 91 (171)
Q Consensus 24 ~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lvG~S~Gg~~a~ 91 (171)
..+.++|.++||.|+-+-....- ......++...+.+.+..-....-|.++|.-.|-.++.
T Consensus 16 ~~I~~~Lk~~g~~v~D~G~~~~~-------~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG~~iaA 76 (151)
T COG0698 16 EIIIDHLKSKGYEVIDFGTYTDE-------GSVDYPDYAKKVAEAVLNGEADLGILICGTGIGMSIAA 76 (151)
T ss_pred HHHHHHHHHCCCEEEeccccCCC-------CCcchHHHHHHHHHHHHcCCCCeeEEEecCChhHHHHh
Confidence 45788999999998654211111 11245666666666665432345577777766665543
No 465
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=20.41 E-value=1.9e+02 Score=17.41 Aligned_cols=13 Identities=31% Similarity=0.220 Sum_probs=9.0
Q ss_pred hhHHHHHhCCCeE
Q 030815 25 KVKPQLEAAGHRV 37 (171)
Q Consensus 25 ~~~~~l~~~g~~v 37 (171)
..+..|.+.||.+
T Consensus 76 ~aa~~L~~~G~~~ 88 (100)
T cd01523 76 FVAELLAERGYDV 88 (100)
T ss_pred HHHHHHHHcCcee
Confidence 4566777778873
No 466
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=20.29 E-value=2e+02 Score=21.32 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCCcEEEEEeChhHHHHHHHHHhC
Q 030815 65 LLEILASLSADEKVVIVGHSLGGLSLALAAEKF 97 (171)
Q Consensus 65 ~~~~i~~~~~~~~~~lvG~S~Gg~~a~~~~~~~ 97 (171)
+.++.+.+...++|.++|......+|.++..++
T Consensus 118 l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l 150 (278)
T PRK11557 118 LHECVTMLRSARRIILTGIGASGLVAQNFAWKL 150 (278)
T ss_pred HHHHHHHHhcCCeEEEEecChhHHHHHHHHHHH
Confidence 334444445678999999988888888887654
No 467
>PRK04148 hypothetical protein; Provisional
Probab=20.21 E-value=2.8e+02 Score=18.49 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=17.8
Q ss_pred CCCcEEEEEeChhHHHHHHHHHh
Q 030815 74 ADEKVVIVGHSLGGLSLALAAEK 96 (171)
Q Consensus 74 ~~~~~~lvG~S~Gg~~a~~~~~~ 96 (171)
...++..+|-.+|..++..++..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~ 38 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES 38 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC
Confidence 34679999988888788877754
No 468
>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []. This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.
Probab=20.13 E-value=34 Score=23.76 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=0.0
Q ss_pred cCCCeEEEEcCCCCCch--------------hHHhhHHHHHhCCCeEEEecCC
Q 030815 5 KKQKHFVLVHGSNHGAW--------------CWYKVKPQLEAAGHRVTALDLT 43 (171)
Q Consensus 5 ~~~~~vv~lHG~~~~~~--------------~~~~~~~~l~~~g~~v~~~d~~ 43 (171)
..+..||++||.+. .+ .+..+++...+.||.|+..+.+
T Consensus 97 ~~~~llViih~~g~-~wa~~~~~~~~l~~gs~~~~~i~~A~~~~~gVI~~N~~ 148 (178)
T PF09757_consen 97 TAKKLLVIIHGSGV-IWARRLIINGGLDSGSQIPQYIKWALKEGYGVIDLNPN 148 (178)
T ss_dssp -----------------------------------------------------
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 34568999999775 11 1111334444557777776543
No 469
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=20.12 E-value=78 Score=24.10 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=15.0
Q ss_pred EEEEeChhHHHHHHHHH
Q 030815 79 VIVGHSLGGLSLALAAE 95 (171)
Q Consensus 79 ~lvG~S~Gg~~a~~~~~ 95 (171)
.++|-|.||.+|+.++.
T Consensus 45 li~GTStGgiiA~~l~~ 61 (309)
T cd07216 45 LIGGTSTGGLIAIMLGR 61 (309)
T ss_pred eeeeccHHHHHHHHhcc
Confidence 78899999999998864
No 470
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=20.06 E-value=1.8e+02 Score=21.81 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=17.6
Q ss_pred cEEEEEeChhHHHHHHHHHhCC
Q 030815 77 KVVIVGHSLGGLSLALAAEKFP 98 (171)
Q Consensus 77 ~~~lvG~S~Gg~~a~~~~~~~~ 98 (171)
+|+|||-+.+|..+..++.+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G 24 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAG 24 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT
T ss_pred eEEEECCCHHHHHHHHHHHhcc
Confidence 6899999999999999988865
No 471
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=20.05 E-value=1.2e+02 Score=19.92 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=18.9
Q ss_pred HHhhHHHHHhCCCeEEEecCCCC
Q 030815 23 WYKVKPQLEAAGHRVTALDLTAS 45 (171)
Q Consensus 23 ~~~~~~~l~~~g~~v~~~d~~g~ 45 (171)
-..+.+.|+.+||.|+..+-...
T Consensus 38 g~aL~~~LR~~GYaV~e~~~~~~ 60 (121)
T PF07283_consen 38 GQALENALRAKGYAVIEDDPPDN 60 (121)
T ss_pred HHHHHHHHHhcCcEEEecCCccc
Confidence 45789999999999999886643
Done!