BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030817
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AL3|A Chain A, Cofactor Binding Fragment Of Cysb From Klebsiella
           Aerogenes
          Length = 324

 Score = 32.0 bits (71), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 101 QVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFI 160
           QV PA   +     +    +D  K+V GE  +PD  S  +    T+   +L   I+  FI
Sbjct: 58  QVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYVATTHTQARYALPGVIK-GFI 116

Query: 161 SRYAFIPHHM 170
            RY  +  HM
Sbjct: 117 ERYPRVSLHM 126


>pdb|1DKI|A Chain A, Crystal Structure Of The Zymogen Form Of Streptococcal
           Pyrogenic Exotoxin B Active Site (C47s) Mutant
 pdb|1DKI|B Chain B, Crystal Structure Of The Zymogen Form Of Streptococcal
           Pyrogenic Exotoxin B Active Site (C47s) Mutant
 pdb|1DKI|C Chain C, Crystal Structure Of The Zymogen Form Of Streptococcal
           Pyrogenic Exotoxin B Active Site (C47s) Mutant
 pdb|1DKI|D Chain D, Crystal Structure Of The Zymogen Form Of Streptococcal
           Pyrogenic Exotoxin B Active Site (C47s) Mutant
          Length = 371

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 4   AAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGE 45
           A   EI+   +  L D+    +  GNP  L TP++E    GE
Sbjct: 112 AGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE 153


>pdb|1PVJ|A Chain A, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
           B (Speb)- Inhibitor Complex
 pdb|1PVJ|B Chain B, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
           B (Speb)- Inhibitor Complex
 pdb|1PVJ|C Chain C, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
           B (Speb)- Inhibitor Complex
 pdb|1PVJ|D Chain D, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
           B (Speb)- Inhibitor Complex
          Length = 368

 Score = 28.1 bits (61), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 4   AAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGE 45
           A   EI+   +  L D+    +  GNP  L TP++E    GE
Sbjct: 109 AGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE 150


>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
          Length = 1580

 Score = 26.9 bits (58), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 16   FLADAAVTAFQYGNPDKLCT 35
            FL+ A  T ++Y  PDK CT
Sbjct: 1391 FLSPATFTVYEYHRPDKQCT 1410


>pdb|3CU7|A Chain A, Human Complement Component 5
 pdb|3CU7|B Chain B, Human Complement Component 5
 pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
            Beta-Grasp Domain Of Ssl7
 pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
            Beta-Grasp Domain Of Ssl7
 pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
          Length = 1676

 Score = 26.9 bits (58), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 16   FLADAAVTAFQYGNPDKLCT 35
            FL+ A  T ++Y  PDK CT
Sbjct: 1487 FLSPATFTVYEYHRPDKQCT 1506


>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
 pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
          Length = 1676

 Score = 26.9 bits (58), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 16   FLADAAVTAFQYGNPDKLCT 35
            FL+ A  T ++Y  PDK CT
Sbjct: 1487 FLSPATFTVYEYHRPDKQCT 1506


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,239,009
Number of Sequences: 62578
Number of extensions: 201274
Number of successful extensions: 424
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 11
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)