BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030817
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1PF50|EDA2_ARATH Probable serine protease EDA2 OS=Arabidopsis thaliana GN=EDA2 PE=2
SV=2
Length = 489
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 118/150 (78%)
Query: 1 MFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYL 60
+F+A EL+++ DFLY ADAAV AFQYGNPDKLC PLVEAK G DLV Y+ +V+EY +
Sbjct: 251 LFNATELDVDADFLYLTADAAVMAFQYGNPDKLCVPLVEAKKNGSDLVVTYSTYVREYCM 310
Query: 61 GSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHL 120
+G V+TYN+K L+NT VT SA RLWWFQ CTE+ +FQVAP DSVRS +++T +HL
Sbjct: 311 RIWGLRVRTYNRKHLRNTVVTADSAYRLWWFQACTELGYFQVAPKYDSVRSHQINTTFHL 370
Query: 121 DLCKNVFGEGIYPDVDSTNIYYGGTKIAGS 150
DLCK++FG+ +YP VD+TN+YYGG ++A +
Sbjct: 371 DLCKSLFGKDVYPKVDATNLYYGGDRLAAT 400
>sp|P34528|YM67_CAEEL Putative serine protease K12H4.7 OS=Caenorhabditis elegans
GN=K12H4.7 PE=3 SV=2
Length = 510
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 61 GSFGASVQTYNQ--KRLKNTAVTDQSADRLWWFQVCTEVAFFQ------VAPANDSVRSS 112
G FG + YN +K+ + +DR W +Q CTE ++Q P V S
Sbjct: 341 GYFGCNDIDYNGFISFMKDETFGEAQSDRAWVWQTCTEFGYYQSTSSATAGPWFGGV--S 398
Query: 113 KVDTRYHLDLCKNVFG-----EGIYPDVDSTNIYYGG 144
+ +Y++D C ++G + + VD TN YYGG
Sbjct: 399 NLPAQYYIDECTAIYGAAYNSQEVQTSVDYTNQYYGG 435
>sp|Q9QXE5|TSSP_MOUSE Thymus-specific serine protease OS=Mus musculus GN=Prss16 PE=2 SV=1
Length = 509
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 85 ADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFG---EGIYPDVDSTNIY 141
DR W +Q CTE F+ S + L+LC+ VFG + V TN Y
Sbjct: 368 GDRQWLYQTCTEFGFYVTCEGLQCPFSQLPALPFQLELCEQVFGLSPASVAQAVAQTNSY 427
Query: 142 YGG 144
YGG
Sbjct: 428 YGG 430
>sp|Q9NQE7|TSSP_HUMAN Thymus-specific serine protease OS=Homo sapiens GN=PRSS16 PE=2 SV=2
Length = 514
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 85 ADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFG---EGIYPDVDSTNIY 141
DR W +Q CTE F+ S LDLC+ VFG + V TN Y
Sbjct: 369 GDRQWLYQTCTEFGFYVTCENPRCPFSQLPALPSQLDLCEQVFGLSALSVAQAVAQTNSY 428
Query: 142 YGG 144
YGG
Sbjct: 429 YGG 431
>sp|P90893|YM9I_CAEEL Putative serine protease F56F10.1 OS=Caenorhabditis elegans
GN=F56F10.1 PE=1 SV=2
Length = 540
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 77 NTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEG-----I 131
N D +A R W + C E+ F Q ++V + V +D+C ++FG+ I
Sbjct: 364 NVLGPDGAAARGWMWLCCNEIGFLQTTNQGNNVFGTGVPLNLFIDMCTDMFGDSMKMSQI 423
Query: 132 YPDVDSTNIYYGG 144
+ YYGG
Sbjct: 424 MGGNKKSQNYYGG 436
>sp|P0A9F3|CYSB_ECOLI HTH-type transcriptional regulator CysB OS=Escherichia coli (strain
K12) GN=cysB PE=3 SV=1
Length = 324
Score = 33.1 bits (74), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 101 QVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFI 160
QV PA + + +D K+V GE +PD S I T+ +L + I+ FI
Sbjct: 58 QVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIK-GFI 116
Query: 161 SRYAFIPHHM 170
RY + HM
Sbjct: 117 ERYPRVSLHM 126
>sp|P0A9F4|CYSB_ECOL6 HTH-type transcriptional regulator CysB OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=cysB PE=3 SV=1
Length = 324
Score = 33.1 bits (74), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 101 QVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFI 160
QV PA + + +D K+V GE +PD S I T+ +L + I+ FI
Sbjct: 58 QVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIK-GFI 116
Query: 161 SRYAFIPHHM 170
RY + HM
Sbjct: 117 ERYPRVSLHM 126
>sp|P0A9F5|CYSB_ECO57 HTH-type transcriptional regulator CysB OS=Escherichia coli O157:H7
GN=cysB PE=3 SV=1
Length = 324
Score = 33.1 bits (74), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 101 QVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFI 160
QV PA + + +D K+V GE +PD S I T+ +L + I+ FI
Sbjct: 58 QVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIK-GFI 116
Query: 161 SRYAFIPHHM 170
RY + HM
Sbjct: 117 ERYPRVSLHM 126
>sp|P06614|CYSB_SALTY HTH-type transcriptional regulator CysB OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=cysB PE=1 SV=1
Length = 324
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 101 QVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFI 160
QV PA + + +D K+V GE +PD S I T+ +L I+ FI
Sbjct: 58 QVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPGVIK-GFI 116
Query: 161 SRYAFIPHHM 170
RY + HM
Sbjct: 117 ERYPRVSLHM 126
>sp|P45600|CYSB_KLEPN HTH-type transcriptional regulator CysB OS=Klebsiella pneumoniae
GN=cysB PE=1 SV=2
Length = 324
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 101 QVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIAGSLASCIQTNFI 160
QV PA + + +D K+V GE +PD S + T+ +L I+ FI
Sbjct: 58 QVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYVATTHTQARYALPGVIK-GFI 116
Query: 161 SRYAFIPHHM 170
RY + HM
Sbjct: 117 ERYPRVSLHM 126
>sp|P13433|RPOM_YEAST DNA-directed RNA polymerase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO41 PE=1
SV=2
Length = 1351
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 81 TDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIY 132
+D S R W QV T +A S RS++ DT Y L++ + GE +Y
Sbjct: 774 SDPSILRAWKLQVKT------IANKFSSDRSNRCDTNYKLEIARAFLGEKLY 819
>sp|B0UR84|DNAK_METS4 Chaperone protein DnaK OS=Methylobacterium sp. (strain 4-46)
GN=dnaK PE=3 SV=1
Length = 639
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 17/28 (60%)
Query: 31 DKLCTPLVEAKNAGEDLVDAYAKFVKEY 58
DK LVE KN GE LV A K VKEY
Sbjct: 521 DKKRRELVEVKNQGESLVHATEKSVKEY 548
>sp|Q65Q25|RHAA_MANSM L-rhamnose isomerase OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=rhaA PE=3 SV=1
Length = 417
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 101 QVAPANDSVRSSKVDTRYHLDLCKN-VFGEGIYPDVDSTNIYYGGTKIAGSLASCI 155
++ A D + + K+D +YHLD ++ +FG G+ +N +Y ++ A C+
Sbjct: 201 RLVEALDEIIAEKIDAKYHLDAVESKLFGIGVESYTVGSNEFYAAYAVSRGTALCL 256
>sp|O64474|HMA4_ARATH Putative cadmium/zinc-transporting ATPase HMA4 OS=Arabidopsis
thaliana GN=HMA4 PE=1 SV=2
Length = 1172
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 89 WWFQVCTEVAFFQVAPANDSVRSSKVDTR-YHLDLCKNVFGEGIYPDVDSTNIYYGGTKI 147
W V ++ + A D +S V+ R ++ +N GEGIY +D +I+ G KI
Sbjct: 431 WVSSVESKSSHPMAATIVDYAKSVSVEPRPEEVEDYQNFPGEGIYGKIDGNDIFIGNKKI 490
Query: 148 AGSLASC 154
A S A C
Sbjct: 491 A-SRAGC 496
>sp|B8IHL3|DNAK_METNO Chaperone protein DnaK OS=Methylobacterium nodulans (strain ORS2060
/ LMG 21967) GN=dnaK PE=3 SV=1
Length = 637
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 31 DKLCTPLVEAKNAGEDLVDAYAKFVKEY 58
DK LVE KN GE L+ A K VKEY
Sbjct: 521 DKKRRELVEVKNQGESLIHATEKSVKEY 548
>sp|Q58195|Y785_METJA Uncharacterized protein MJ0785 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0785 PE=4 SV=1
Length = 375
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 42 NAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQ 101
NAG DL + K +K+Y + + +++T N+ K ++ DR+ +VC V +
Sbjct: 169 NAGADLTEESIKELKKYGIDTICCNLETINENLFKKVKPGEELEDRI---RVCKLVNKYD 225
Query: 102 VAPAND---SVRSSKVDTRYHLDLCKNVFGEGIYP 133
+ + + S D HL KN G P
Sbjct: 226 IELSTGLLIGIGESYEDRVEHLFYLKNELNVGEIP 260
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,771,963
Number of Sequences: 539616
Number of extensions: 2400607
Number of successful extensions: 5048
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5042
Number of HSP's gapped (non-prelim): 20
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)