Query 030817
Match_columns 171
No_of_seqs 126 out of 762
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2182 Hydrolytic enzymes of 100.0 2.6E-36 5.7E-41 252.8 9.7 153 11-166 275-450 (514)
2 PF05577 Peptidase_S28: Serine 100.0 2E-33 4.3E-38 238.6 3.9 165 2-168 200-395 (434)
3 KOG2183 Prolylcarboxypeptidase 99.9 3.7E-26 8.1E-31 188.1 9.9 156 2-164 257-430 (492)
4 PF05576 Peptidase_S37: PS-10 96.5 0.0071 1.5E-07 51.3 6.1 71 86-167 290-369 (448)
5 COG3977 Alanine-alpha-ketoisov 52.5 14 0.00031 30.7 2.8 23 135-158 84-106 (417)
6 PF09664 DUF2399: Protein of u 31.3 29 0.00063 25.5 1.4 21 151-171 67-98 (152)
7 PRK14760 hypothetical protein; 23.9 30 0.00064 17.6 0.2 7 95-101 19-25 (26)
8 PF14433 SUKH-3: SUKH-3 immuni 18.9 73 0.0016 22.7 1.5 37 111-148 16-52 (142)
9 cd00389 microbial_RNases micro 17.8 1.3E+02 0.0029 19.1 2.3 23 144-168 48-70 (71)
10 COG5171 YRB1 Ran GTPase-activa 17.0 61 0.0013 24.6 0.7 11 85-96 158-168 (211)
No 1
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=252.78 Aligned_cols=153 Identities=29% Similarity=0.448 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHhhhcCC-----------hhhccHhhHhccccChhHHHHHHHHHHHHhccccCCcccccc--h--hhh
Q 030817 11 GDFLYFLADAAVTAFQYGN-----------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYN--Q--KRL 75 (171)
Q Consensus 11 ~df~~~l~~~~~~~~Qy~~-----------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~--~~~ 75 (171)
..|+..|.+.|+++|||.. ++++|+.|.+. ...+.+.++.++++.+.... +..|.+++ . ..+
T Consensus 275 ~~ff~nv~~~FqgvvQY~gd~~~~~~~~~~i~~~C~~l~n~--t~~d~v~~~~~~~~~~~~~~-~~~c~~~~Y~~~i~~~ 351 (514)
T KOG2182|consen 275 HNFFSNVYSNFQGVVQYSGDNSNATASGLGIPAMCDILNNK--TPGDDVVAVNKYMNWFNNGF-GYGCLDNTYNGMISYL 351 (514)
T ss_pred HHHHHHHHHhhhhheeecCCCCcccccccChhHHHHHhhcC--CCCchHHHHHHHHHHHHhcc-CCCcCCccHHHHHHHh
Confidence 3488999999999999963 47899999984 56788999999999876543 33455443 2 456
Q ss_pred hccCCCC--CCCCcceeecccccccccccCCCCCCCCccCCCchhHHHHHHhhcCC-----CCCcCHHHHHHhhCC-CCC
Q 030817 76 KNTAVTD--QSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGE-----GIYPDVDSTNIYYGG-TKI 147 (171)
Q Consensus 76 ~~~~~~~--~~~~R~W~~QtCtE~g~fqt~~~~~~~fs~~i~~~~~~~~C~~~Fg~-----~~~p~v~~tN~~yGG-~~~ 147 (171)
+++.... ..++|+|+||||||||||||+++++++|+..++++||+++|+++||. .+.+.|+.||.+||| .++
T Consensus 352 ~n~~~~~~~~~a~r~W~wQtCtEfG~yQttds~~~iFgs~vp~~~fid~C~dlFG~~y~~~~i~~~V~~TN~~YGG~~~~ 431 (514)
T KOG2182|consen 352 KNSTEPGEDAAADRLWTWQTCTEFGYYQTTDSGNSIFGSTVPLDYFIDLCMDLFGAEYTAKGIDPNVDQTNYKYGGRDNY 431 (514)
T ss_pred hcccCcCcccccchhhhhhhcccceeeEecCCCCccccCCCChHHHHHHHHHHhCchhhhhHHHHHHHHhhhhcCccccc
Confidence 6544332 24689999999999999999999999999999999999999999994 578899999999999 589
Q ss_pred CCCeEEEeCCCCCcccccC
Q 030817 148 AGSLASCIQTNFISRYAFI 166 (171)
Q Consensus 148 ~~sniif~nG~~d~~~~~~ 166 (171)
+++||+|+||++|||.+.+
T Consensus 432 ~atnVvf~NG~~DPWh~LG 450 (514)
T KOG2182|consen 432 NATNVVFPNGSLDPWHALG 450 (514)
T ss_pred CcceEEecCCCCCchhhhc
Confidence 9999999999999998754
No 2
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=99.97 E-value=2e-33 Score=238.56 Aligned_cols=165 Identities=30% Similarity=0.438 Sum_probs=92.1
Q ss_pred CC-cccCCCh--hH---HHHHHHHHHHHhhhcCC------------hhhccHhhHhccccChhHHHHHHHHHHHHhccc-
Q 030817 2 FD-AAELEIE--GD---FLYFLADAAVTAFQYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGS- 62 (171)
Q Consensus 2 F~-~~~l~~~--~d---f~~~l~~~~~~~~Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~- 62 (171)
|+ |..+... .| |+..++..++.++||++ +..+|+.|++. ...+.+.++..+.+.+..-.
T Consensus 200 f~~~~~~~~~~~~d~~~~~~~~~~~~~~~~qy~~~~~~~~~~~~~~i~~~C~~l~~~--~~~~~~~~~~~~~~~~~~~~~ 277 (434)
T PF05577_consen 200 FKLCFPLDDKNDDDFAYFFSSIADAFQGMVQYPYPGNFNSPLPAWPIRQLCDSLTNA--SWPDEVLRLAALAQWYNNFNT 277 (434)
T ss_dssp CTBSS---TCHCHHHHHHHHHHHHHHHHHT--SS-EESSSEE-SSHHHHHHHHCHTS--SSHHHHHHHHHHHHHHCCCH-
T ss_pred hhhccccccccchHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcchHHHhhhhccc--ccCchhHHHHHHHHHHHHhcC
Confidence 66 3555432 44 55567788888999952 57999999976 33344444444433321111
Q ss_pred -c-CCcccccch----hhhhccCCCCCCCCcceeecccccccccccCCCCCCCCccCCCchhHHHHHHhhcCCC-----C
Q 030817 63 -F-GASVQTYNQ----KRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEG-----I 131 (171)
Q Consensus 63 -~-~~~~~~~~~----~~~~~~~~~~~~~~R~W~~QtCtE~g~fqt~~~~~~~fs~~i~~~~~~~~C~~~Fg~~-----~ 131 (171)
+ ...|.+... ....+..+++..++|+|.||+|||||||||+++..++|+++++++++.++|+++||+. +
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~W~wQtCtE~G~fqt~~~~~~l~~~~~~l~~~~~~C~~~Fg~~~~~~~i 357 (434)
T PF05577_consen 278 TCYSNSCADFDYNCFDSTYDDSSFDDNADDRQWLWQTCTEFGYFQTADGPNSLFSRLVNLDYYQDQCQDVFGPGPNPESI 357 (434)
T ss_dssp SCCHHCCC--SS-BSSTT---SS----HHHHHHHHHHCCT-B----B-SSSSSS-B---HHHHHHHHHHHHS----T---
T ss_pred ccccccccccccccccCCCCcccccccccchhhHHHhhhhccceeccCCCCCcccCCCCHHHHHHHHHHHhCCCcccccc
Confidence 1 111222211 1112222211235799999999999999999998899999999999999999999863 4
Q ss_pred CcCHHHHHHhhCC-CCCCCCeEEEeCCCCCcccccCCC
Q 030817 132 YPDVDSTNIYYGG-TKIAGSLASCIQTNFISRYAFIPH 168 (171)
Q Consensus 132 ~p~v~~tN~~yGG-~~~~~sniif~nG~~d~~~~~~~~ 168 (171)
.++++++|.+||| ++++++||+|+||++|||++++..
T Consensus 358 ~~~~~~tN~~YGG~~~~~~tnviFtNG~~DPW~~lgv~ 395 (434)
T PF05577_consen 358 PPNVDWTNNYYGGWWNPNATNVIFTNGELDPWRALGVT 395 (434)
T ss_dssp ---TCHHHHHHTTT--TT--SEEEEEETT-CCGGGS--
T ss_pred ccchhHHhheeCccccCCCCeEEeeCCCCCCcccccCC
Confidence 5589999999999 899999999999999999999854
No 3
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.93 E-value=3.7e-26 Score=188.09 Aligned_cols=156 Identities=18% Similarity=0.233 Sum_probs=128.7
Q ss_pred CC-cccCC-ChhHHHHHHHHHHHH--hhhcCC------------hhhccHhhHhccccChhHHHHHHHHHHHHhccccCC
Q 030817 2 FD-AAELE-IEGDFLYFLADAAVT--AFQYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGA 65 (171)
Q Consensus 2 F~-~~~l~-~~~df~~~l~~~~~~--~~Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 65 (171)
|+ |..|+ +..++..+|.+++.. ||||++ ++++|+.|........+.|+++.+.+..+||.+++.
T Consensus 257 f~lc~~ln~d~~~l~d~l~ea~~ylAMVdYPy~t~Fl~pLPa~PV~~~C~~i~~~~~~~~~ll~~i~a~~~~yyNytg~~ 336 (492)
T KOG2183|consen 257 FKLCKPLNDDIGDLKDYLREAYEYLAMVDYPYPTSFLAPLPAWPVKVVCKYINAPGPNDSDLLDRIFAAVNLYYNYTGSE 336 (492)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHHHhcCCCCccccCcCCCCcHHHHHHHhccCCCChHHHHHHHHHHhhheeccCCCc
Confidence 55 57777 556778888866544 888873 479999998764344788999999999999888778
Q ss_pred cccccchhhhhccCCCCCCCCcceeecccccccccccCCCCCCCCc-cCCCchhHHHHHHhhcCCCCCcCHHHHHHhhCC
Q 030817 66 SVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRS-SKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGG 144 (171)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~R~W~~QtCtE~g~fqt~~~~~~~fs-~~i~~~~~~~~C~~~Fg~~~~p~v~~tN~~yGG 144 (171)
.|.+.+ +.+.....+.|.|.||+|||+.+..++++.+.||+ -+++.+.+.+.|.+.|| +.|+++|++.+|||
T Consensus 337 ~C~d~s-----d~t~~~~~d~~gW~~QaCtEmVMp~~~ng~~~mf~~~~fn~~~y~e~C~~~~~--v~prP~wi~t~fgg 409 (492)
T KOG2183|consen 337 KCYDIS-----DPTYGSGLDDLGWPWQACTEMVMPMCSNGVDDMFPDCPFNSESYQEGCMQTFG--VTPRPKWITTEFGG 409 (492)
T ss_pred chhccc-----cccCCCCCCcCCCchhhhhhhhhccccCCCcccCCCCCCCHHHHHHHHHHhcC--CCCCCcceehhhcc
Confidence 888764 12222234679999999999999999999899995 58999999999999999 89999999999999
Q ss_pred CCCCC-CeEEEeCCCCCcccc
Q 030817 145 TKIAG-SLASCIQTNFISRYA 164 (171)
Q Consensus 145 ~~~~~-sniif~nG~~d~~~~ 164 (171)
.++.+ |||||+||.+|||--
T Consensus 410 ~~l~~~SNiIFSNG~LDPWSG 430 (492)
T KOG2183|consen 410 ADLSAFSNIIFSNGLLDPWSG 430 (492)
T ss_pred ccchhhcceeeeCCCcCCccC
Confidence 88765 899999999999964
No 4
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=96.50 E-value=0.0071 Score=51.32 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=41.4
Q ss_pred CcceeecccccccccccCCCCCCCCccCCCchhHHHHHHhh---------cCCCCCcCHHHHHHhhCCCCCCCCeEEEeC
Q 030817 86 DRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNV---------FGEGIYPDVDSTNIYYGGTKIAGSLASCIQ 156 (171)
Q Consensus 86 ~R~W~~QtCtE~g~fqt~~~~~~~fs~~i~~~~~~~~C~~~---------Fg~~~~p~v~~tN~~yGG~~~~~sniif~n 156 (171)
--..+||.=||+||+....+. +...++...+. =... |.+...++|+..-. -+++|+|||+
T Consensus 290 y~pyyyQA~teLG~p~~~~~h--l~~~ll~~g~~---~~r~fvP~~i~m~Fdp~am~dI~~Wvr------~~~~rmlFVY 358 (448)
T PF05576_consen 290 YTPYYYQAGTELGYPGYDTPH--LRKKLLRYGYQ---PPRNFVPRDIPMKFDPTAMRDIDRWVR------NNGPRMLFVY 358 (448)
T ss_pred ccChHHHHHhhcCCCCCCCcc--hhccccccCCC---CcccCCCCCCCCCcCHHHHHHHHHHHH------hCCCeEEEEe
Confidence 468999999999998654322 11111111110 0122 32222334443332 3679999999
Q ss_pred CCCCcccccCC
Q 030817 157 TNFISRYAFIP 167 (171)
Q Consensus 157 G~~d~~~~~~~ 167 (171)
|+.|||.|..-
T Consensus 359 G~nDPW~A~~f 369 (448)
T PF05576_consen 359 GENDPWSAEPF 369 (448)
T ss_pred CCCCCcccCcc
Confidence 99999998754
No 5
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=52.47 E-value=14 Score=30.70 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=19.8
Q ss_pred HHHHHHhhCCCCCCCCeEEEeCCC
Q 030817 135 VDSTNIYYGGTKIAGSLASCIQTN 158 (171)
Q Consensus 135 v~~tN~~yGG~~~~~sniif~nG~ 158 (171)
+...|.+|| |++...||..+||.
T Consensus 84 a~~l~~~yg-wnit~~NIalTnGS 106 (417)
T COG3977 84 AKMLRREYG-WNITAQNIALTNGS 106 (417)
T ss_pred HHHHHHHhC-CCCccceeeecCCc
Confidence 566788875 99999999999997
No 6
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=31.30 E-value=29 Score=25.47 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=16.3
Q ss_pred eEEEeCCCCCc-----------ccccCCCCCC
Q 030817 151 LASCIQTNFIS-----------RYAFIPHHMS 171 (171)
Q Consensus 151 niif~nG~~d~-----------~~~~~~~~~~ 171 (171)
-.++..|+||| ++.+.|+||+
T Consensus 67 ~~l~y~GDfDp~Gl~IA~~l~~r~~~~~Wrm~ 98 (152)
T PF09664_consen 67 ARLYYSGDFDPEGLRIANRLIQRYGARPWRMD 98 (152)
T ss_pred CEEEEecCCCHHHHHHHHHHHHHhCCccccCC
Confidence 47788999999 4677787774
No 7
>PRK14760 hypothetical protein; Provisional
Probab=23.89 E-value=30 Score=17.59 Aligned_cols=7 Identities=14% Similarity=0.572 Sum_probs=4.5
Q ss_pred ccccccc
Q 030817 95 TEVAFFQ 101 (171)
Q Consensus 95 tE~g~fq 101 (171)
||+|||.
T Consensus 19 t~~gww~ 25 (26)
T PRK14760 19 TQFGWWX 25 (26)
T ss_pred ccccccc
Confidence 5677763
No 8
>PF14433 SUKH-3: SUKH-3 immunity protein
Probab=18.90 E-value=73 Score=22.66 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=27.8
Q ss_pred ccCCCchhHHHHHHhhcCCCCCcCHHHHHHhhCCCCCC
Q 030817 111 SSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIA 148 (171)
Q Consensus 111 s~~i~~~~~~~~C~~~Fg~~~~p~v~~tN~~yGG~~~~ 148 (171)
.|.++.+.+.+..++. |-.+.|.+.+.-.+|||..+.
T Consensus 16 ~R~idi~~~~~~~~~~-g~~~~paa~~fL~efGgL~i~ 52 (142)
T PF14433_consen 16 GRKIDISLWEKILEEE-GYPVFPAAVEFLAEFGGLRIN 52 (142)
T ss_pred CcccCHHHHHHHHHhc-CCCCCHHHHHHHHHcCCeEEe
Confidence 3566777666666555 666899998899999999764
No 9
>cd00389 microbial_RNases microbial_RNases. Ribonucleases (RNAses) cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. The alignment contains fungal RNases (U2, T1, F1, Th, Pb, N1, and Ms) and bacterial RNases (barnase, binase, RNase Sa) , the majority of which are guanyl specific and fungal ribotoxins.
Probab=17.76 E-value=1.3e+02 Score=19.06 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=15.6
Q ss_pred CCCCCCCeEEEeCCCCCcccccCCC
Q 030817 144 GTKIAGSLASCIQTNFISRYAFIPH 168 (171)
Q Consensus 144 G~~~~~sniif~nG~~d~~~~~~~~ 168 (171)
+.+..+.|||+.+. .-|++...|
T Consensus 48 ~~~rGa~RIV~~~~--g~~y~t~dH 70 (71)
T cd00389 48 GGSRGADRVVYGGD--GEFYGTIDH 70 (71)
T ss_pred CCCCCCCEEEECCC--CcEEEecCc
Confidence 45667789999765 445665555
No 10
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=16.99 E-value=61 Score=24.62 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=8.6
Q ss_pred CCcceeeccccc
Q 030817 85 ADRLWWFQVCTE 96 (171)
Q Consensus 85 ~~R~W~~QtCtE 96 (171)
..|+|.| +||+
T Consensus 158 sdrsWvw-~~ta 168 (211)
T COG5171 158 SDRSWVW-MSTA 168 (211)
T ss_pred cccceEE-Eeec
Confidence 5799999 5665
Done!