Query 030817
Match_columns 171
No_of_seqs 126 out of 762
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 07:33:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2z_B Lysosomal Pro-X carboxy 100.0 2E-35 6.9E-40 250.4 7.3 160 1-169 215-394 (446)
2 4ebb_A Dipeptidyl peptidase 2; 100.0 6.3E-29 2.2E-33 212.0 12.7 163 2-169 217-401 (472)
3 3elb_A Ethanolamine-phosphate 16.5 1.2E+02 0.004 24.3 3.5 31 132-162 179-210 (341)
4 1mmc_A AC-AMP2, antimicrobial 12.8 40 0.0014 17.1 -0.1 13 92-104 13-25 (30)
5 2z5k_B Nuclear RNA export fact 11.1 91 0.0031 15.6 0.9 19 151-169 6-24 (30)
6 2juc_A PRE-mRNA-splicing facto 10.6 66 0.0022 18.9 0.3 9 160-168 37-45 (59)
7 4hwm_A Uncharacterized protein 9.0 1.2E+02 0.0042 20.4 1.2 14 98-111 23-36 (130)
8 3ihj_A Alanine aminotransferas 8.2 2.1E+02 0.0072 23.4 2.6 23 136-158 140-162 (498)
9 2kus_A SM-AMP-1.1A; plant anti 7.0 1.3E+02 0.0046 15.6 0.5 12 92-103 18-29 (35)
10 1l6p_A Thiol:disulfide interch 6.7 1.3E+02 0.0043 20.2 0.4 14 87-100 96-109 (125)
No 1
>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=250.40 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=127.0
Q ss_pred CCC-cccCCChhH---HHHHHHHHHHH--hhhcCC------------hhhccHhhHhccccChhHHHHHHHHHHHHhccc
Q 030817 1 MFD-AAELEIEGD---FLYFLADAAVT--AFQYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGS 62 (171)
Q Consensus 1 ~F~-~~~l~~~~d---f~~~l~~~~~~--~~Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 62 (171)
+|+ |++|++ .| |+..|+++++. ++||+. +.++|+.|++...+..+.+++++++++.+++.+
T Consensus 215 ~F~lc~~l~~-~D~~~~~~~l~~~~~~~a~~~y~~~~~~~~~~p~~~v~~~C~~l~~~~~~~~~~~~~~~~~~~~~~n~~ 293 (446)
T 3n2z_B 215 ALHLCSPLTS-QDIQHLKDWISETWVNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYS 293 (446)
T ss_dssp HTTBSSCCCT-TSHHHHHHHHHHHHHHHHHTCCSSCEESSSEECSSHHHHHHHHSCCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCCCCCCH-HHHHHHHHHHHHHHhhhhhcccccccccccCCCCccHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcC
Confidence 488 478865 45 66788888865 677752 478999998653234577899999988877654
Q ss_pred cCCcccccchhhhhccCCCCCCCCcceeecccccccccccCCCCCCCC-ccCCCchhHHHHHHhhcCCCCCcCHHHHHHh
Q 030817 63 FGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVR-SSKVDTRYHLDLCKNVFGEGIYPDVDSTNIY 141 (171)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~R~W~~QtCtE~g~fqt~~~~~~~f-s~~i~~~~~~~~C~~~Fg~~~~p~v~~tN~~ 141 (171)
....|.+.+... . ...++|+|.||+|||||||||+++.+++| +++++++++.++|+++|| +.|+++++|.+
T Consensus 294 ~~~~C~~~~~~~-----~-~~~~~r~W~yQ~CtE~g~~~t~~~~~~~f~~~~~~~~~~~~~C~~~Fg--~~p~~~~~~~~ 365 (446)
T 3n2z_B 294 GQVKCLNISETA-----T-SSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWG--VRPRPSWITTM 365 (446)
T ss_dssp SCCSSBCCCC----------CHHHHHHHHHHHHTCCCCCCBCSSSSSSCCBCCCHHHHHHHHHHHHS--CCCCTTHHHHH
T ss_pred CCCCCcCcCcCc-----C-CCccccceeeeecCCccccccCCCCCCcCcCCcCCHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 445676553211 1 12357999999999999999998888899 579999999999999999 78999999999
Q ss_pred hCCCCC-CCCeEEEeCCCCCcccccCCCC
Q 030817 142 YGGTKI-AGSLASCIQTNFISRYAFIPHH 169 (171)
Q Consensus 142 yGG~~~-~~sniif~nG~~d~~~~~~~~~ 169 (171)
|||+++ .++||||+||++|||++++++.
T Consensus 366 yGG~~~~~~sniif~NG~~DPW~~~gv~~ 394 (446)
T 3n2z_B 366 YGGKNISSHTNIVFSNGELDPWSGGGVTK 394 (446)
T ss_dssp HCTTCCTTCCCEEEEEESSCGGGGGSCCS
T ss_pred hccccCCCCCeEEEeCCCcCCcccccccc
Confidence 999995 6799999999999999999864
No 2
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=99.96 E-value=6.3e-29 Score=211.99 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=114.0
Q ss_pred CC-cccCCChhHH---HHHHHHHHHHhhh--cCC------------hhhccHhhHhccccChhHHHHHHHHHHHHhcccc
Q 030817 2 FD-AAELEIEGDF---LYFLADAAVTAFQ--YGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSF 63 (171)
Q Consensus 2 F~-~~~l~~~~df---~~~l~~~~~~~~Q--y~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 63 (171)
|+ |+++.+..|+ +..+.++++.++| |.. +..+|+.|.+. .+.+.++..++..+++..+
T Consensus 217 f~~c~~~~~~~d~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~----~~~~~~~~~~~~~~~~~~~ 292 (472)
T 4ebb_A 217 FGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSE----AQRITGLRALAGLVYNASG 292 (472)
T ss_dssp HTBSSCCCSHHHHHHHHHHHHHHHHHHHHTCCSSCEESSSEECSSHHHHHHHHHHTC----SSHHHHHHHHHHHHHCTTS
T ss_pred hcCCCCCCChHHHHHHHHHHHHHHHHHhhhccccchhhcccCccchHHHHHHHhccc----chHHHHHHHHHHHHhhccC
Confidence 45 6788776664 4455566655444 432 35678888754 2456667777666666554
Q ss_pred CCcccccchhhhhccCCC---CCCCCcceeecccccccccccCCCCCCCC-ccCCCchhHHHHHHhhcCCCCCcCHHHHH
Q 030817 64 GASVQTYNQKRLKNTAVT---DQSADRLWWFQVCTEVAFFQVAPANDSVR-SSKVDTRYHLDLCKNVFGEGIYPDVDSTN 139 (171)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~---~~~~~R~W~~QtCtE~g~fqt~~~~~~~f-s~~i~~~~~~~~C~~~Fg~~~~p~v~~tN 139 (171)
...|.+.........+.+ ...++|+|.||+||||||||++++.+++| +++++++++.++|+++||....|++. +|
T Consensus 293 ~~~c~~~~~~~~~~~~~~~~~~~~~~r~W~yQ~CtE~g~~~~~~~~~~~f~~~~~~~~~~~~~C~~~fg~~~~~~~~-~~ 371 (472)
T 4ebb_A 293 SEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWL-LT 371 (472)
T ss_dssp CCSSBCHHHHCCCCSSTTCCCSSHHHHHHHHHHTTTCCCCCCBCSSSSSSCCBCCCHHHHHHHHHHHHSCCCCTTHH-HH
T ss_pred CcchhhhhhhhhhccCCcccCCCCCcccccccccccccccccCCCCCCcCCCCCCcHHHHHHHHHHHhCCCCChhHH-HH
Confidence 555654321111111111 11236999999999999999999888887 56899999999999999965555554 45
Q ss_pred HhhCCCCCCCCeEEEeCCCCCcccccCCCC
Q 030817 140 IYYGGTKIAGSLASCIQTNFISRYAFIPHH 169 (171)
Q Consensus 140 ~~yGG~~~~~sniif~nG~~d~~~~~~~~~ 169 (171)
.+|||.+++++||||+||++|||++++++.
T Consensus 372 ~~~Gg~~~~~sniiF~nG~~DPW~~~gv~~ 401 (472)
T 4ebb_A 372 SFWGGDLRAASNIIFSNGNLDPWAGGGIRR 401 (472)
T ss_dssp HHCTTCCTTCCSEEEEEETTCTTGGGSCCS
T ss_pred HhcCCcCCCCCeEEEECCCcCCCcCccCCC
Confidence 678888999999999999999999999864
No 3
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=16.55 E-value=1.2e+02 Score=24.28 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=21.1
Q ss_pred CcCHHHHHHhhCCCCCC-CCeEEEeCCCCCcc
Q 030817 132 YPDVDSTNIYYGGTKIA-GSLASCIQTNFISR 162 (171)
Q Consensus 132 ~p~v~~tN~~yGG~~~~-~sniif~nG~~d~~ 162 (171)
.|....+-..=+|..++ ..+|++++|.|||-
T Consensus 179 ~~~~~~~~~f~~g~~~~~~~~iv~~~GsFD~~ 210 (341)
T 3elb_A 179 LQTSQKIIQFASGKEPQPGETVIYVAGAFDLF 210 (341)
T ss_dssp CCCHHHHHHHCCCCCCCTTCEEEEEEECCTTC
T ss_pred cCCcceeeeeccCCCCCCCCEEEEEecccCCC
Confidence 44555555434665554 57899999999984
No 4
>1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A*
Probab=12.84 E-value=40 Score=17.07 Aligned_cols=13 Identities=15% Similarity=0.616 Sum_probs=9.6
Q ss_pred cccccccccccCC
Q 030817 92 QVCTEVAFFQVAP 104 (171)
Q Consensus 92 QtCtE~g~fqt~~ 104 (171)
+.|+++||--|++
T Consensus 13 ~CCS~~G~CGtt~ 25 (30)
T 1mmc_A 13 MCCSQFGYCGKGP 25 (30)
T ss_dssp CEECTTSCEESSH
T ss_pred CCCCCCCcccCcc
Confidence 4889999876653
No 5
>2z5k_B Nuclear RNA export factor 1; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB: 2z5m_B
Probab=11.06 E-value=91 Score=15.63 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=15.7
Q ss_pred eEEEeCCCCCcccccCCCC
Q 030817 151 LASCIQTNFISRYAFIPHH 169 (171)
Q Consensus 151 niif~nG~~d~~~~~~~~~ 169 (171)
++.+.++..||..-.||+-
T Consensus 6 d~~m~d~~~~~~~RytPY~ 24 (30)
T 2z5k_B 6 DVAMSDAQDGPRVRYNPYT 24 (30)
T ss_pred CccccccccCccccccCcc
Confidence 5778899999998888873
No 6
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=10.56 E-value=66 Score=18.95 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=4.9
Q ss_pred CcccccCCC
Q 030817 160 ISRYAFIPH 168 (171)
Q Consensus 160 d~~~~~~~~ 168 (171)
||+|.+.|+
T Consensus 37 DpRY~~l~s 45 (59)
T 2juc_A 37 DPDFYKIRD 45 (59)
T ss_dssp STTGGGSSC
T ss_pred CCCeeecCC
Confidence 555555554
No 7
>4hwm_A Uncharacterized protein YEDD; YEDD-like protein, PF13987 family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 1.38A {Klebsiella pneumoniae subsp}
Probab=9.01 E-value=1.2e+02 Score=20.42 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=10.7
Q ss_pred cccccCCCCCCCCc
Q 030817 98 AFFQVAPANDSVRS 111 (171)
Q Consensus 98 g~fqt~~~~~~~fs 111 (171)
|||||..+...|+|
T Consensus 23 G~WQs~GPQs~lvS 36 (130)
T 4hwm_A 23 GFWQTKGPQSAMMS 36 (130)
T ss_dssp EEEECCSCCTTSSS
T ss_pred eeeeccCCcccccC
Confidence 88998877666765
No 8
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=8.19 E-value=2.1e+02 Score=23.43 Aligned_cols=23 Identities=9% Similarity=-0.115 Sum_probs=17.4
Q ss_pred HHHHHhhCCCCCCCCeEEEeCCC
Q 030817 136 DSTNIYYGGTKIAGSLASCIQTN 158 (171)
Q Consensus 136 ~~tN~~yGG~~~~~sniif~nG~ 158 (171)
+++..++||.....++|++++|-
T Consensus 140 ~~~~~~~gG~~~~~~~i~~t~G~ 162 (498)
T 3ihj_A 140 AYITRRDGGVPADPDNIYLTTGA 162 (498)
T ss_dssp HHHHHHTTTCCCCGGGEEEESSH
T ss_pred HHHHHhcCCCCCCcccEEEcCCH
Confidence 44555666787788999999984
No 9
>2kus_A SM-AMP-1.1A; plant antimicrobial peptide, chitin-binding peptide, antimic protein; NMR {Stellaria media}
Probab=7.00 E-value=1.3e+02 Score=15.60 Aligned_cols=12 Identities=8% Similarity=0.426 Sum_probs=8.8
Q ss_pred cccccccccccC
Q 030817 92 QVCTEVAFFQVA 103 (171)
Q Consensus 92 QtCtE~g~fqt~ 103 (171)
..|+++||-=++
T Consensus 18 ~CCS~~G~CG~t 29 (35)
T 2kus_A 18 LCCSQYGYCGSG 29 (35)
T ss_dssp CEECTTSBEECS
T ss_pred CccCCCccccCC
Confidence 478999987554
No 10
>1l6p_A Thiol:disulfide interchange protein DSBD; disulfide bond isomerase protein, immunoglobulin-like fold, electron transport; 1.65A {Escherichia coli} SCOP: b.1.17.1 PDB: 1jzd_C
Probab=6.67 E-value=1.3e+02 Score=20.22 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.0
Q ss_pred cceeeccccccccc
Q 030817 87 RLWWFQVCTEVAFF 100 (171)
Q Consensus 87 R~W~~QtCtE~g~f 100 (171)
-.=.||-|+|-|.+
T Consensus 96 l~v~yQGCad~GlC 109 (125)
T 1l6p_A 96 LTVTYQGCADAGFC 109 (125)
T ss_dssp EEEEECEEETTTEE
T ss_pred EEEEEeCcCCCCeE
Confidence 45689999998764
Done!