Query 030817
Match_columns 171
No_of_seqs 126 out of 762
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 07:33:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030817.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030817hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mmca_ g.3.1.2 (A:) Antimicro 44.1 2.7 0.00019 19.5 0.3 10 92-101 13-22 (30)
2 d1vf8a2 d.26.3.1 (A:246-315) C 17.6 38 0.0028 18.8 2.3 40 87-126 3-44 (70)
3 d2cj3a1 b.6.1.1 (A:1-105) Plas 16.5 15 0.0011 21.9 0.2 10 160-169 84-93 (105)
4 d2q5ba1 b.6.1.1 (A:1-105) Plas 13.0 22 0.0016 21.1 0.2 8 162-169 86-93 (105)
5 d1kdja_ b.6.1.1 (A:) Plastocya 13.0 22 0.0016 20.9 0.2 11 159-169 81-91 (102)
6 d1g47a1 g.39.1.3 (A:1-35) Pinc 12.0 30 0.0022 16.8 0.5 11 149-159 20-30 (35)
7 d9wgaa2 g.3.1.1 (A:53-86) Whea 11.6 23 0.0017 17.2 -0.0 13 92-104 7-19 (34)
8 d1bypa_ b.6.1.1 (A:) Plastocya 9.0 30 0.0022 20.2 -0.2 11 159-169 78-88 (99)
9 d1wb0a2 d.26.3.1 (A:267-336) C 8.6 73 0.0053 17.3 1.5 39 87-125 3-43 (68)
10 d1iuza_ b.6.1.1 (A:) Plastocya 8.5 42 0.0031 19.4 0.4 7 162-168 80-86 (98)
No 1
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Probab=44.10 E-value=2.7 Score=19.54 Aligned_cols=10 Identities=10% Similarity=0.587 Sum_probs=8.1
Q ss_pred cccccccccc
Q 030817 92 QVCTEVAFFQ 101 (171)
Q Consensus 92 QtCtE~g~fq 101 (171)
++|++|||.-
T Consensus 13 mccsqfgycg 22 (30)
T d1mmca_ 13 MCCSQFGYCG 22 (30)
T ss_dssp CEECTTSCEE
T ss_pred chhhhcCccc
Confidence 5899999964
No 2
>d1vf8a2 d.26.3.1 (A:246-315) Chitinase-like lectin ym1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.56 E-value=38 Score=18.76 Aligned_cols=40 Identities=5% Similarity=0.069 Sum_probs=25.4
Q ss_pred cceeec--ccccccccccCCCCCCCCccCCCchhHHHHHHhh
Q 030817 87 RLWWFQ--VCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNV 126 (171)
Q Consensus 87 R~W~~Q--tCtE~g~fqt~~~~~~~fs~~i~~~~~~~~C~~~ 126 (171)
|+|.-. .|+.+|-.-++.+....+.+.--.=-+.++|+.+
T Consensus 3 Rs~tL~~~~~~~~gap~~g~g~~G~~t~~~G~l~y~EIc~~~ 44 (70)
T d1vf8a2 3 HTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFL 44 (70)
T ss_dssp EEEEESCTTCCSTTCBEEEECCCCTTTCCTTEEEHHHHHHHH
T ss_pred CceECCCCccCCCCCccccCCCCCCccCCCCeEeHHHHHHHH
Confidence 556555 6888887766655556665543444567888654
No 3
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}
Probab=16.46 E-value=15 Score=21.85 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=8.2
Q ss_pred CcccccCCCC
Q 030817 160 ISRYAFIPHH 169 (171)
Q Consensus 160 d~~~~~~~~~ 169 (171)
.-||+|+||+
T Consensus 84 ~y~y~C~~H~ 93 (105)
T d2cj3a1 84 EYTFYCEPHR 93 (105)
T ss_dssp EEEEECTTTG
T ss_pred eEEEEeCCCc
Confidence 4599999985
No 4
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}
Probab=13.05 E-value=22 Score=21.08 Aligned_cols=8 Identities=38% Similarity=0.750 Sum_probs=7.2
Q ss_pred ccccCCCC
Q 030817 162 RYAFIPHH 169 (171)
Q Consensus 162 ~~~~~~~~ 169 (171)
||+|+||+
T Consensus 86 ~y~C~~H~ 93 (105)
T d2q5ba1 86 TYYCAPHR 93 (105)
T ss_dssp EEECSTTG
T ss_pred EEEeCCCC
Confidence 89999986
No 5
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=12.99 E-value=22 Score=20.94 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=8.5
Q ss_pred CCcccccCCCC
Q 030817 159 FISRYAFIPHH 169 (171)
Q Consensus 159 ~d~~~~~~~~~ 169 (171)
-.-+|.|+||+
T Consensus 81 G~y~Y~C~~H~ 91 (102)
T d1kdja_ 81 GTYTFYCTPHK 91 (102)
T ss_dssp EEEEEECSTTG
T ss_pred ceEEEEecCCc
Confidence 45578899986
No 6
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.97 E-value=30 Score=16.77 Aligned_cols=11 Identities=0% Similarity=-0.127 Sum_probs=8.2
Q ss_pred CCeEEEeCCCC
Q 030817 149 GSLASCIQTNF 159 (171)
Q Consensus 149 ~sniif~nG~~ 159 (171)
..+|+=+||++
T Consensus 20 ~EkiVNSnGEl 30 (35)
T d1g47a1 20 AEKIVNSNGEL 30 (35)
T ss_dssp TTTCEEETTEE
T ss_pred hHHhhcCCCcc
Confidence 37788888874
No 7
>d9wgaa2 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]}
Probab=11.55 E-value=23 Score=17.25 Aligned_cols=13 Identities=8% Similarity=0.368 Sum_probs=9.9
Q ss_pred cccccccccccCC
Q 030817 92 QVCTEVAFFQVAP 104 (171)
Q Consensus 92 QtCtE~g~fqt~~ 104 (171)
+.|+++||--|++
T Consensus 7 ~CCS~~G~CGtt~ 19 (34)
T d9wgaa2 7 HCCSQYGHCGFGA 19 (34)
T ss_dssp CEECTTSBEECSH
T ss_pred CcccccccccCch
Confidence 4789999976654
No 8
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}
Probab=9.03 E-value=30 Score=20.18 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=7.9
Q ss_pred CCcccccCCCC
Q 030817 159 FISRYAFIPHH 169 (171)
Q Consensus 159 ~d~~~~~~~~~ 169 (171)
--=||+|+||.
T Consensus 78 G~y~y~C~~H~ 88 (99)
T d1bypa_ 78 GTYKFYCAPHA 88 (99)
T ss_dssp EEEEEECGGGT
T ss_pred ceEEEEECcCC
Confidence 33478999974
No 9
>d1wb0a2 d.26.3.1 (A:267-336) Chitotriosidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.57 E-value=73 Score=17.31 Aligned_cols=39 Identities=10% Similarity=0.022 Sum_probs=23.2
Q ss_pred cceeec--ccccccccccCCCCCCCCccCCCchhHHHHHHh
Q 030817 87 RLWWFQ--VCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKN 125 (171)
Q Consensus 87 R~W~~Q--tCtE~g~fqt~~~~~~~fs~~i~~~~~~~~C~~ 125 (171)
|+|.-. .|+++|-.-++++....+++.--.=-+.++|+.
T Consensus 3 rs~tL~~~~~~~~gap~~Gpg~~G~~T~~~G~l~y~EIc~~ 43 (68)
T d1wb0a2 3 RSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW 43 (68)
T ss_dssp EEEEESCTTCCSTTCBEEEECCCCTTTCCTTEEEHHHHTTC
T ss_pred cceEcCCCCCCCCCCccccCCCCCCccCCCeeEEhHHhhhh
Confidence 555543 688888776666656666543233335568854
No 10
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}
Probab=8.46 E-value=42 Score=19.43 Aligned_cols=7 Identities=29% Similarity=0.278 Sum_probs=0.0
Q ss_pred ccccCCC
Q 030817 162 RYAFIPH 168 (171)
Q Consensus 162 ~~~~~~~ 168 (171)
+|+|+||
T Consensus 80 ~y~C~~H 86 (98)
T d1iuza_ 80 GVYCEPH 86 (98)
T ss_dssp EEECTTT
T ss_pred EEEeCCC
Done!