AmiGO: BLAST Results


BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	4.7e-32
BLAST match view associations BLAST with AT5G54580 AT5G54580 AT5G54580	protein from Arabidopsis thaliana	3.1e-19
BLAST match view associations BLAST with ORRM1 ORRM1 ORRM1 AT3G20930	protein from Arabidopsis thaliana	3.4e-19
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	1.6e-17
BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	6.0e-16
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	2.6e-15
BLAST match view associations BLAST with AT2G27330 AT2G27330 AT2G27330	protein from Arabidopsis thaliana	2.3e-14
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	7.9e-14
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	1.0e-13
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	2.7e-13
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	4.4e-13
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	4.4e-13
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	4.4e-13
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	5.6e-13
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	9.1e-13
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.2e-12
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	1.2e-12
BLAST match view associations BLAST with AT4G20030 AT4G20030 AT4G20030	protein from Arabidopsis thaliana	1.2e-12
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	1.5e-12
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.9e-12
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	2.4e-12
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	3.9e-12
BLAST match view associations BLAST with U1-70K U1-70K U1-70K AT3G50670	protein from Arabidopsis thaliana	5.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	6.4e-12
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	8.2e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.3e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.3e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.3e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.3e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	1.3e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	1.3e-11
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	1.3e-11
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	1.3e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	1.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.5e-11
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	1.8e-11
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	2.2e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	2.2e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	2.2e-11
BLAST match view associations BLAST with R09B3.2 R09B3.2 R09B3.2	gene from Caenorhabditis elegans	2.2e-11
BLAST match view associations BLAST with G5E5V7 G5E5V7 G5E5V7 Uncharacterized protein	protein from Bos taurus	2.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	2.8e-11
BLAST match view associations BLAST with AT2G43370 AT2G43370 AT2G43370	protein from Arabidopsis thaliana	2.8e-11
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	3.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	4.5e-11
BLAST match view associations BLAST with AT5G59860 AT5G59860 AT5G59860	protein from Arabidopsis thaliana	4.5e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	5.8e-11
BLAST match view associations BLAST with F1M2S4 F1M2S4 F1M2S4 Uncharacterized protein	protein from Rattus norvegicus	5.8e-11
BLAST match view associations BLAST with RBMXL1 RBMXL1 RBMXL1 RNA binding motif protein, X-linked-like-1	protein from Homo sapiens	7.0e-11
BLAST match view associations BLAST with RPS19 RPS19 RPS19 AT5G47320	protein from Arabidopsis thaliana	7.4e-11
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	8.8e-11
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	9.2e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich splicing factor 2	protein from Gallus gallus	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich splicing factor 2	protein from Bos taurus	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Uncharacterized protein	protein from Canis lupus familiaris	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich splicing factor 2	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich splicing factor 2	protein from Sus scrofa	9.4e-11
BLAST match view associations BLAST with Srsf2 Srsf2 Srsf2 serine/arginine-rich splicing factor 2	protein from Mus musculus	9.4e-11
BLAST match view associations BLAST with Srsf2 Srsf2 Srsf2 serine/arginine-rich splicing factor 2	gene from Rattus norvegicus	9.4e-11
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	1.0e-10
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	1.2e-10
BLAST match view associations BLAST with D4A2D2 D4A2D2 D4A2D2 Uncharacterized protein	protein from Rattus norvegicus	1.6e-10
BLAST match view associations BLAST with SRSF8 SRSF8 SRSF8 Serine/arginine-rich splicing factor 8	protein from Homo sapiens	1.7e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Gallus gallus	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	1.9e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X-linked	gene from Rattus norvegicus	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Rbmx	protein from Bos taurus	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Homo sapiens	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Pan troglodytes	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Macaca fascicularis	1.9e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X chromosome	protein from Mus musculus	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Canis lupus familiaris	1.9e-10
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Gallus gallus	2.0e-10
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	2.0e-10
BLAST match view associations BLAST with srsf2b srsf2b srsf2b serine/arginine-rich splicing factor 2b	gene_product from Danio rerio	2.0e-10
BLAST match view associations BLAST with srsf2a srsf2a srsf2a serine/arginine-rich splicing factor 2a	gene_product from Danio rerio	2.0e-10
BLAST match view associations BLAST with rnp-7 rnp-7 rnp-7	gene from Caenorhabditis elegans	2.2e-10
BLAST match view associations BLAST with SC35 SC35 SC35 AT5G64200	protein from Arabidopsis thaliana	2.2e-10
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X linked-like-1	protein from Mus musculus	2.4e-10
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	2.5e-10
BLAST match view associations BLAST with GSU1324 GSU1324 GSU1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	2.5e-10
BLAST match view associations BLAST with GSU_1324 GSU_1324 GSU_1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	2.5e-10
BLAST match view associations BLAST with GR-RBP6 GR-RBP6 GR-RBP6 AT1G18630	protein from Arabidopsis thaliana	2.5e-10
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030819
        (171 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi...   351  4.7e-32   1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi...   230  3.1e-19   1
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi...   232  3.4e-19   1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi...   214  1.6e-17   1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi...   199  6.0e-16   1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi...   193  2.6e-15   1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi...   184  2.3e-14   1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin...   179  7.9e-14   1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...   178  1.0e-13   1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin...   177  2.7e-13   1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi...   172  4.4e-13   1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido...   172  4.4e-13   1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"...   172  4.4e-13   1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,...   171  5.6e-13   1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi...   169  9.1e-13   1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin...   168  1.2e-12   1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi...   168  1.2e-12   1
TAIR|locus:2119797 - symbol:AT4G20030 species:3702 "Arabi...   168  1.2e-12   1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer...   167  1.5e-12   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   167  1.5e-12   1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin...   166  1.9e-12   1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   165  2.4e-12   1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3...   163  3.9e-12   1
TAIR|locus:2101714 - symbol:U1-70K "AT3G50670" species:37...   169  5.4e-12   1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   161  6.4e-12   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   161  6.4e-12   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   161  6.4e-12   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   161  6.4e-12   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   161  6.4e-12   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   161  6.4e-12   1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   161  6.4e-12   1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   161  6.4e-12   1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   161  6.4e-12   1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   161  6.4e-12   1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   161  6.4e-12   1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702...   160  8.2e-12   1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"...   158  1.3e-11   1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"...   158  1.3e-11   1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"...   158  1.3e-11   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   158  1.3e-11   1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   158  1.3e-11   1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi...   158  1.3e-11   1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding...   158  1.3e-11   1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro...   158  1.3e-11   1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   159  1.5e-11   1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi...   161  1.5e-11   1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3...   160  1.8e-11   1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein...   156  2.2e-11   1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ...   156  2.2e-11   1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   156  2.2e-11   1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   156  2.2e-11   1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha...   156  2.2e-11   1
UNIPROTKB|G5E5V7 - symbol:G5E5V7 "Uncharacterized protein...   160  2.5e-11   1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot...   155  2.8e-11   1
TAIR|locus:2058141 - symbol:AT2G43370 species:3702 "Arabi...   160  2.8e-11   1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ...   154  3.5e-11   1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein...   153  4.5e-11   1
TAIR|locus:2168133 - symbol:AT5G59860 species:3702 "Arabi...   153  4.5e-11   1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p...   152  5.8e-11   1
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein...   152  5.8e-11   1
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote...   158  7.0e-11   1
TAIR|locus:2171539 - symbol:RPS19 "ribosomal protein S19"...   151  7.4e-11   1
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein...   154  8.8e-11   1
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein...   154  9.2e-11   1
UNIPROTKB|P30352 - symbol:SRSF2 "Serine/arginine-rich spl...   150  9.4e-11   1
UNIPROTKB|Q3MHR5 - symbol:SRSF2 "Serine/arginine-rich spl...   150  9.4e-11   1
UNIPROTKB|E2RDB2 - symbol:SRSF2 "Uncharacterized protein"...   150  9.4e-11   1
UNIPROTKB|B4DN89 - symbol:SRSF2 "Serine/arginine-rich-spl...   150  9.4e-11   1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl...   150  9.4e-11   1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl...   150  9.4e-11   1
UNIPROTKB|Q01130 - symbol:SRSF2 "Serine/arginine-rich spl...   150  9.4e-11   1
UNIPROTKB|Q06A98 - symbol:SRSF2 "Serine/arginine-rich spl...   150  9.4e-11   1
MGI|MGI:98284 - symbol:Srsf2 "serine/arginine-rich splici...   150  9.4e-11   1
RGD|1359422 - symbol:Srsf2 "serine/arginine-rich splicing...   150  9.4e-11   1
UNIPROTKB|Q6PDU1 - symbol:Srsf2 "Serine/arginine-rich spl...   150  9.4e-11   1
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ...   154  1.0e-10   1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ...   149  1.2e-10   1
UNIPROTKB|F1M6U1 - symbol:F1M6U1 "Uncharacterized protein...   150  1.4e-10   1
UNIPROTKB|D4A2D2 - symbol:D4A2D2 "Uncharacterized protein...   150  1.6e-10   1
UNIPROTKB|Q9BRL6 - symbol:SRSF8 "Serine/arginine-rich spl...   151  1.7e-10   1
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ...   154  1.9e-10   1
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ...   154  1.9e-10   1
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l...   154  1.9e-10   1
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein...   154  1.9e-10   1
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein...   154  1.9e-10   1
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein...   154  1.9e-10   1
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein...   154  1.9e-10   1
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,...   154  1.9e-10   1
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ...   154  1.9e-10   1
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"...   147  2.0e-10   1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s...   147  2.0e-10   1
ZFIN|ZDB-GENE-030131-2420 - symbol:srsf2b "serine/arginin...   147  2.0e-10   1
ZFIN|ZDB-GENE-040426-2706 - symbol:srsf2a "serine/arginin...   147  2.0e-10   1
WB|WBGene00004390 - symbol:rnp-7 species:6239 "Caenorhabd...   152  2.2e-10   1
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic...   151  2.2e-10   1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei...   153  2.4e-10   1
UNIPROTKB|F8W646 - symbol:HNRNPA1 "Heterogeneous nuclear ...   146  2.5e-10   1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s...   146  2.5e-10   1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"...   146  2.5e-10   1
TAIR|locus:2027438 - symbol:GR-RBP6 "glycine-rich RNA-bin...   146  2.5e-10   1

WARNING:  Descriptions of 969 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2206850 [details] [associations]
            symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
            EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
            RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
            SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
            GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
            HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
            ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
        Length = 181

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 73/130 (56%), Positives = 98/130 (75%)

Query:    46 LFSLRQGRGRGACFPLACLPP----SPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGF 101
             + S R+ R  G     +CL      SP S S+  PKT+L+VSGLSFRT+ED+LR+ F+ F
Sbjct:    42 VISARRRRDIGGVLISSCLSTDSSSSPPS-SSSGPKTKLYVSGLSFRTTEDTLRDTFEQF 100

Query:   102 GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELR 161
             G L+ +N+VMDK+ANRP+GFAFLRY TEEE+ +AI+GMHGKFLDGRVIFVE AK+R+++ 
Sbjct:   101 GNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMS 160

Query:   162 QAFKNNPRQN 171
             +A    PR++
Sbjct:   161 RA---KPRRD 167


>TAIR|locus:2172144 [details] [associations]
            symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
            HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
            EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
            ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
            PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
            KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
            InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
            ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
            Uniprot:Q9FIU6
        Length = 156

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 47/97 (48%), Positives = 66/97 (68%)

Query:    75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRR 134
             +P T LFVSGLS RT+ + LR AF  FG++ +  +V D+++   +GF F+RYAT E+S +
Sbjct:    53 EPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAK 112

Query:   135 AIEGMHGKFLDGRVIFVEIAKSRAELRQAFKNNPRQN 171
              I GM GKFLDG VIF E A+ R E  Q+++  P+ N
Sbjct:   113 GIAGMDGKFLDGWVIFAEYARPR-EQSQSYQ--PQNN 146


>TAIR|locus:2088756 [details] [associations]
            symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0019252 "starch biosynthetic
            process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
            EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
            UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
            EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
            TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
            ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
            Uniprot:Q8L440
        Length = 374

 Score = 232 (86.7 bits), Expect = 3.4e-19, P = 3.4e-19
 Identities = 44/82 (53%), Positives = 66/82 (80%)

Query:    77 KTR-LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             KT+ LF++GLSF TSE +LR AF+GFG+LVEV ++MDKI+ R +G+AFL Y TEE +  A
Sbjct:   280 KTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTA 339

Query:   136 IEGMHGKFLDGRVIFVEIAKSR 157
             ++ M+GK ++G +I V++AK++
Sbjct:   340 LKEMNGKIINGWMIVVDVAKTK 361


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 39/93 (41%), Positives = 63/93 (67%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFVS LS  T++ SLR  F  FGQ+ E  L+ D    RP+GF F+ + +E+++R+A++ 
Sbjct:     8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67

Query:   139 MHGKFLDGRVIFVEIAKSRAELRQAFKNNPRQN 171
             + GK +DGR+IFVE+AK+  E+R    +N  ++
Sbjct:    68 LDGKIVDGRLIFVEVAKNAEEVRAGINSNKAED 100


>TAIR|locus:2049816 [details] [associations]
            symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
            HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
            RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
            SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
            KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
            InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
            ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
            Uniprot:Q8S8L4
        Length = 142

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 42/90 (46%), Positives = 61/90 (67%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             RLFVSGLS  T+ + L++AF  FGQLV+  ++ D+ + R +GF F+ YAT E++ +A   
Sbjct:    35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94

Query:   139 MHGKFLDGRVIFVEIAKSRAELRQAFKNNP 168
             M+ KFLDG VIFV+ A+ R E R+  +  P
Sbjct:    95 MNAKFLDGWVIFVDPARPR-EPRRPLQQEP 123


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 35/83 (42%), Positives = 60/83 (72%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             ++LF+ GLSF T+E  L  AF   GQ+VE  +VMD++++R +GF F+ +A+ +E+++A+ 
Sbjct:    34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93

Query:   138 GMHGKFLDGRVIFVEIAKSRAEL 160
               +G+ L+GR IFV+ AK++  L
Sbjct:    94 EFNGQQLNGRTIFVDYAKAKQSL 116


>TAIR|locus:2039590 [details] [associations]
            symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
            IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
            ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
            EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
            TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
            PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
            Uniprot:Q1ECN0
        Length = 116

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 30/77 (38%), Positives = 60/77 (77%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             LFV G+SF ++E++L  AF  +GQ+++V+++MDKI  RP+GFA++ ++++EE+ +A+  +
Sbjct:    23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82

Query:   140 HGKFLDGRVIFVEIAKS 156
             + + +DGRV+ ++  K+
Sbjct:    83 NAQLVDGRVVILDTTKA 99


>UNIPROTKB|Q43472 [details] [associations]
            symbol:blt801 "Glycine-rich RNA-binding protein blt801"
            species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
            to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
            EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
            Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
        Length = 161

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 35/79 (44%), Positives = 53/79 (67%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             R FV GL + T + SL+NAF  +G +++  ++ D+   R RGF F+ +A++E  R+AIE 
Sbjct:     7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query:   139 MHGKFLDGRVIFVEIAKSR 157
             M+G+ LDGR I V  A+SR
Sbjct:    67 MNGQDLDGRNITVNEAQSR 85


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 42/117 (35%), Positives = 67/117 (57%)

Query:    49 LRQGRGRGACFPLACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVN 108
             LRQG  + +  P+  +  S   +S+     +LFV GLS+ T + SL+ AF  FG++ E  
Sbjct:    11 LRQGVSQSSNGPVTSMLGSLRYMSS-----KLFVGGLSWGTDDSSLKQAFTSFGEVTEAT 65

Query:   109 LVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAEL-RQAF 164
             ++ D+   R RGF F+ ++ E+ +  AI+ M GK L+GR I V +A  R+   R +F
Sbjct:    66 VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSF 122


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 177 (67.4 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/92 (34%), Positives = 54/92 (58%)

Query:    66 PSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLR 125
             PS      C   ++LF+ G+++   EDSLR AF  +G++V+  +++D+   R RGF F+ 
Sbjct:    28 PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query:   126 YATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
             + + E +  AI+ + G+ L GRV+ V  A  R
Sbjct:    88 FTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 36/88 (40%), Positives = 57/88 (64%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GL+F T+E+SL   F  +GQ+ EV +V D+ + R RGF F+ +   E+++ A+  
Sbjct:     7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIA-KSRAELRQAFK 165
             M+GK +DGR I V+ A KS  + R  ++
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSNDRRGGYR 94


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 34/80 (42%), Positives = 52/80 (65%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P+ R F+ GL++ TS+  LR+AF+ +G LVE  +V+DK + R RGF F+ +  ++    A
Sbjct:     5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64

Query:   136 IEGMHGKFLDGRVIFVEIAK 155
             I  M+G  LDGR I V+ A+
Sbjct:    65 IAAMNGMDLDGRTITVDKAQ 84


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 32/76 (42%), Positives = 52/76 (68%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+E SL +AF  +G +  V++  ++  NR RGF F+ +   ++++ A+EG
Sbjct:     6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK +DGR I V+ A
Sbjct:    66 MNGKSVDGRTIRVDEA 81


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 34/79 (43%), Positives = 52/79 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             R FV GL++ T+++ L+  F  FG +++  ++ D+ + R RGF F+ +  E+  R AIE 
Sbjct:     7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66

Query:   139 MHGKFLDGRVIFVEIAKSR 157
             M+GK LDGRVI V  A+SR
Sbjct:    67 MNGKELDGRVITVNEAQSR 85


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 34/86 (39%), Positives = 52/86 (60%)

Query:    72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEE 131
             S+  P ++LF+ GLS+   E SL++AF  FG++ EV +  DK + R RGF F+ +A E +
Sbjct:    35 SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94

Query:   132 SRRAIEGMHGKFLDGRVIFVEIAKSR 157
             +  A + M GK L GR + +  A  R
Sbjct:    95 ALSAKDAMDGKGLLGRPLRISFALER 120


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 35/88 (39%), Positives = 56/88 (63%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+F T+ED L  AF  +G++ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65

Query:   139 MHGKFLDGRVIFVEIA-KSRAELRQAFK 165
             M+GK +DGR I V+ A KS  E R  ++
Sbjct:    66 MNGKSVDGRQIRVDQAGKSSGERRGGYR 93


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 31/76 (40%), Positives = 51/76 (67%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             TR++V  LS  T++D LR AF G+G +V+  ++ D+  +R RGF F+ Y++  E+  A+ 
Sbjct:     3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62

Query:   138 GMHGKFLDGRVIFVEI 153
             GM GK L+GR + V++
Sbjct:    63 GMDGKELNGRRVSVKL 78


>TAIR|locus:2119797 [details] [associations]
            symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
            EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
            UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
            EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
            TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
            PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
            Uniprot:Q67XI5
        Length = 152

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 32/92 (34%), Positives = 59/92 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             +++ V  L F TSED L+  F  FG++ EV L+ D+   R +G+AF+++ +++++  AIE
Sbjct:    40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99

Query:   138 GMHGKFLDGRVIFVEIAKSRAELRQAFKNNPR 169
              M  +  +GR+I+++IAK     ++ F+  PR
Sbjct:   100 TMDRRMYNGRMIYIDIAKPG---KRDFQGLPR 128


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 33/83 (39%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL++ T++D LR  F  +G + E  +V D+  NR RGF F+R+A+E E+  A+  
Sbjct:     3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+ +  DGR+I V+ A  R   R
Sbjct:    63 MNNQEFDGRIIRVDKASERPAAR 85


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 37/88 (42%), Positives = 54/88 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T E  L   F  +GQ+ EV +V D+   R RGF F+ +   E+++ A+ G
Sbjct:     7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66

Query:   139 MHGKFLDGRVIFVEIA-KSRAELRQAFK 165
             M+GK +DGR I V+ A KS  + R  ++
Sbjct:    67 MNGKTVDGRQIRVDQAGKSSNDRRGGYR 94


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 34/88 (38%), Positives = 56/88 (63%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+F T+E+SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query:   139 MHGKFLDGRVIFVEIA-KSRAELRQAFK 165
             M+GK +DGR I V+ A KS  + R  ++
Sbjct:    66 MNGKAVDGRQIRVDQAGKSSGDRRGGYR 93


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 32/91 (35%), Positives = 55/91 (60%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLS+ T+E SL  AF  +G + +V+++ D+  +R RGF F+ +   E+++ A+  
Sbjct:    24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83

Query:   139 MHGKFLDGRVIFVEIAKSRAELRQAFKNNPR 169
             M+GK +DGR+I V+ A         F+   R
Sbjct:    84 MNGKQVDGRMIRVDEAGKSGGRSGGFRGGSR 114


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 35/87 (40%), Positives = 52/87 (59%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T+LF+ GLS+ T + SLR+AF  FG +V+  +++D+   R RGF F+ +  E  +  AI 
Sbjct:    35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94

Query:   138 GMHGKFLDGRVIFVEIAKSRAELRQAF 164
              M GK L+GR I V  A  R    +A+
Sbjct:    95 EMDGKELNGRHIRVNPANDRPSAPRAY 121


>TAIR|locus:2101714 [details] [associations]
            symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
            involved in RNA interference" evidence=RCA] [GO:0035196 "production
            of miRNAs involved in gene silencing by miRNA" evidence=RCA]
            [GO:0043687 "post-translational protein modification" evidence=RCA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
            eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
            EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
            RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
            ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
            PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
            KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
            HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
            PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
            GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
        Length = 427

 Score = 169 (64.5 bits), Expect = 5.4e-12, P = 5.4e-12
 Identities = 37/129 (28%), Positives = 68/129 (52%)

Query:    30 PAPATPFTIKRRDFDSLFSLRQGRG-RGACFPLACLPPSPHSLSTCQPKTRLFVSGLSFR 88
             P P      ++R+   +  LR  +G   A   L    P+    +T  P   LFVS L++ 
Sbjct:    91 PKPEVELPSQKRE--RIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYE 148

Query:    89 TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRV 148
             +SE  ++  F+ +G +  V+LV D++ N+P+G+AF+ Y    + + A +   G+ +DGR 
Sbjct:   149 SSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRR 208

Query:   149 IFVEIAKSR 157
             + V++ + R
Sbjct:   209 VLVDVERGR 217


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 32/79 (40%), Positives = 50/79 (63%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             R FV GL++ T + +L  AF  +G +++  ++ D+   R RGF F+ +  E+  + AIEG
Sbjct:     9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query:   139 MHGKFLDGRVIFVEIAKSR 157
             M+G+ LDGR I V  A+SR
Sbjct:    69 MNGQDLDGRSITVNEAQSR 87


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 34/83 (40%), Positives = 51/83 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +L V GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   +E R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSENR 89


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 34/83 (40%), Positives = 51/83 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +L V GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   +E R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSENR 89


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 34/83 (40%), Positives = 51/83 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +L V GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   +E R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSENR 89


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVE 152
             M+GK +DGR I V+
Sbjct:    67 MNGKSVDGRQIRVD 80


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 33/80 (41%), Positives = 47/80 (58%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GL+F T E +L + F  FG + EV +V D+   R RGF F+ +   E +  A+  
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66

Query:   139 MHGKFLDGRVIFVEIAKSRA 158
             M+G+ LDGR I V+ A   A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 33/83 (39%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E +L   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 33/83 (39%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E +L   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 33/83 (39%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E +L   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 159 (61.0 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 33/76 (43%), Positives = 49/76 (64%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK +DGR I V+ A
Sbjct:    67 MNGKSVDGRQIRVDQA 82


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 161 (61.7 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +DGR I V+ A   ++ R
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNR 89


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 160 (61.4 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 31/84 (36%), Positives = 52/84 (61%)

Query:    74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESR 133
             C   +++FV G+S+ T E  LR AF  +G++V+  +++D+   R RGFAF+ + + EE+ 
Sbjct:    30 CMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEAS 89

Query:   134 RAIEGMHGKFLDGRVIFVEIAKSR 157
              A++ + G+ L GR I V  A  R
Sbjct:    90 NAMQ-LDGQDLHGRRIRVNYATER 112


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/80 (41%), Positives = 47/80 (58%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GL+F T E +L + F  FG + EV +V D+   R RGF F+ +   E +  A+  
Sbjct:     7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66

Query:   139 MHGKFLDGRVIFVEIAKSRA 158
             M+G+ LDGR I V+ A   A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/80 (41%), Positives = 48/80 (60%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GL+F T E +L + F+ FG + EV +V D+   R RGF F+ +   E +  A+  
Sbjct:     7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66

Query:   139 MHGKFLDGRVIFVEIAKSRA 158
             M+G+ LDGR I V+ A   A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/80 (41%), Positives = 47/80 (58%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GL+F T E +L + F  FG + EV +V D+   R RGF F+ +   E +  A+  
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66

Query:   139 MHGKFLDGRVIFVEIAKSRA 158
             M+G+ LDGR I V+ A   A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/80 (41%), Positives = 47/80 (58%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GL+F T E +L + F  FG + EV +V D+   R RGF F+ +   E +  A+  
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66

Query:   139 MHGKFLDGRVIFVEIAKSRA 158
             M+G+ LDGR I V+ A   A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>WB|WBGene00011155 [details] [associations]
            symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
            SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
            PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
            KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
            InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
        Length = 83

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             ++V    F+T+E+ L N F   GQ+  V +V D+   RPRGFAF+ +A E  ++RA+E M
Sbjct:     7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66

Query:   140 HGKFLDGRVIFVEIA 154
             +G   +GR + V +A
Sbjct:    67 NGAEFNGRPLRVNLA 81


>UNIPROTKB|G5E5V7 [details] [associations]
            symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
            export" evidence=IEA] [GO:0045111 "intermediate filament
            cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
            EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
            Uniprot:G5E5V7
        Length = 319

 Score = 160 (61.4 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 41/101 (40%), Positives = 59/101 (58%)

Query:    60 PL-ACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRP 118
             PL +CL  SP  L   +   +LF+ GLSF T+++SLR+ F+ +G L +  +VMD    R 
Sbjct:     7 PLPSCLNQSPKELEQLR---KLFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRS 62

Query:   119 RGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAE 159
             RGF F+ Y T EE   A+     K +DGRV+  + A SR +
Sbjct:    63 RGFGFVTYTTVEEVDAAMNARPQK-MDGRVVEPKRAVSRED 102


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 33/80 (41%), Positives = 47/80 (58%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GL+F T E +L + F  FG + EV +V D+   R RGF F+ +   E +  A+  
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66

Query:   139 MHGKFLDGRVIFVEIAKSRA 158
             M+G+ LDGR I V+ A   A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>TAIR|locus:2058141 [details] [associations]
            symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
            flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
            EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
            UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
            STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
            KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
            PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
            Uniprot:Q8VY74
        Length = 333

 Score = 160 (61.4 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 34/95 (35%), Positives = 48/95 (50%)

Query:    58 CFPLACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANR 117
             C+      PS  S +   P   LFV  LS  T+ED+LR     +G++  + LV   +   
Sbjct:    44 CYNAGLYDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGA 103

Query:   118 PRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152
              RG+ F+ Y TE+E  RA E  H   +DGR I V+
Sbjct:   104 SRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVD 138


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 32/75 (42%), Positives = 46/75 (61%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             LF+ GL+F T+E +L + F  FG + EV +V D+   R RGF F+ +   E +  A+  M
Sbjct:     8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67

Query:   140 HGKFLDGRVIFVEIA 154
             +GK LDGR I V+ A
Sbjct:    68 NGKSLDGRQIRVDHA 82


>TAIR|locus:2168133 [details] [associations]
            symbol:AT5G59860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00539298
            RefSeq:NP_200794.1 UniGene:At.66722 ProteinModelPortal:F4JXD2
            SMR:F4JXD2 EnsemblPlants:AT5G59860.1 GeneID:836108
            KEGG:ath:AT5G59860 Uniprot:F4JXD2
        Length = 157

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/85 (36%), Positives = 55/85 (64%)

Query:    83 SGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142
             SGLS  T++ SLR  F  F +L++     D+   RP+GF F+ + +E+++++A++ ++GK
Sbjct:    76 SGLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGK 130

Query:   143 FLDGRVIFVEIAKSRAELRQAFKNN 167
              ++GR+IFVE AK       + K+N
Sbjct:   131 IVNGRLIFVETAKEVEAPTTSLKSN 155


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 32/80 (40%), Positives = 46/80 (57%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GL+F T E +L + F  FG + EV +V D+   R RGF F+ +   E +   +  
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66

Query:   139 MHGKFLDGRVIFVEIAKSRA 158
             M+G+ LDGR I V+ A   A
Sbjct:    67 MNGESLDGRQIRVDHAGKSA 86


>UNIPROTKB|F1M2S4 [details] [associations]
            symbol:F1M2S4 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
            ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
        Length = 208

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 34/84 (40%), Positives = 53/84 (63%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF+T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:     8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67

Query:   139 MHGKFLDGRVIFVEIAKSRAELRQ 162
                K +DGRV+  + A SR + R+
Sbjct:    68 RPHK-VDGRVVEPKRAVSREDSRR 90


>UNIPROTKB|Q96E39 [details] [associations]
            symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
            eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
            RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
            SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
            PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
            Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
            UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
            neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
            PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
            ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
        Length = 390

 Score = 158 (60.7 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>TAIR|locus:2171539 [details] [associations]
            symbol:RPS19 "ribosomal protein S19" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
            constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
            "translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
            subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
            elongation" evidence=RCA] [GO:0005763 "mitochondrial small
            ribosomal subunit" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
            InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
            PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
            GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
            SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
            EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
            PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
            ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
            PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
            KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
            PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
            Uniprot:P39697
        Length = 212

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 29/78 (37%), Positives = 49/78 (62%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T+L++ GLS  T E SL++AF  F  + E  ++ +K+  R RG+ F+ + +E+ +  AI 
Sbjct:    31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M+G+ L+G  I V +AK
Sbjct:    91 AMNGQELNGFNISVNVAK 108


>UNIPROTKB|H0Y6E7 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
            Uniprot:H0Y6E7
        Length = 292

 Score = 154 (59.3 bits), Expect = 8.8e-11, P = 8.8e-11
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:    11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    71 MNGKSLDGKAIKVEQA 86


>UNIPROTKB|H3BT71 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
            SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
        Length = 296

 Score = 154 (59.3 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>UNIPROTKB|P30352 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
            EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
            UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
            GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
        Length = 221

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS D+LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAVLDGRELRVQMAR 91


>UNIPROTKB|Q3MHR5 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
            IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
            ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
            Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
            InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
            Uniprot:Q3MHR5
        Length = 221

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS D+LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAVLDGRELRVQMAR 91


>UNIPROTKB|E2RDB2 [details] [associations]
            symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
            GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
            EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
            ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
            GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
        Length = 221

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS D+LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAVLDGRELRVQMAR 91


>UNIPROTKB|B4DN89 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
            ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
            ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
            Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
            Bgee:B4DN89 Uniprot:B4DN89
        Length = 209

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS D+LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAVLDGRELRVQMAR 91


>UNIPROTKB|J3KP15 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
            Uniprot:J3KP15
        Length = 134

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS D+LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAVLDGRELRVQMAR 91


>UNIPROTKB|J3QL05 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
            Uniprot:J3QL05
        Length = 130

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS D+LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAVLDGRELRVQMAR 91


>UNIPROTKB|Q01130 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
            "transcription corepressor activity" evidence=NAS] [GO:0016607
            "nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=TAS] [GO:0006369
            "termination of RNA polymerase II transcription" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
            Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
            GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
            HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
            CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
            EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
            EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
            RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
            PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
            ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
            MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
            PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
            Ensembl:ENST00000359995 Ensembl:ENST00000392485
            Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
            KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
            MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
            ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
            NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
            Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
        Length = 221

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS D+LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAVLDGRELRVQMAR 91


>UNIPROTKB|Q06A98 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
            species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
            RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
            SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
        Length = 221

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS D+LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAVLDGRELRVQMAR 91


>MGI|MGI:98284 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
            HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
            OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
            EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
            IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
            UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
            DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
            PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
            Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
            NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
            GermOnline:ENSMUSG00000034120 Uniprot:Q62093
        Length = 221

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS D+LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAVLDGRELRVQMAR 91


>RGD|1359422 [details] [associations]
            symbol:Srsf2 "serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
            OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
            RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
            SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS D+LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAVLDGRELRVQMAR 91


>UNIPROTKB|Q6PDU1 [details] [associations]
            symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
            GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
            EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
            UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
            STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
            Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
            NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
            Uniprot:Q6PDU1
        Length = 221

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS D+LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAVLDGRELRVQMAR 91


>UNIPROTKB|K7GRX3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
            Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
            Uniprot:K7GRX3
        Length = 306

 Score = 154 (59.3 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>UNIPROTKB|F8VZ49 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
            HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
            ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
            Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
            Uniprot:F8VZ49
        Length = 231

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 36/92 (39%), Positives = 56/92 (60%)

Query:    70 SLSTCQPKT--RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYA 127
             +LS  +P+   +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YA
Sbjct:    23 ALSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 82

Query:   128 TEEESRRAIEGMHGKFLDGRVIFVEIAKSRAE 159
             T EE   A+     K +DGRV+  + A SR +
Sbjct:    83 TVEEVDAAMNARPHK-VDGRVVEPKRAVSRED 113


>UNIPROTKB|F1M6U1 [details] [associations]
            symbol:F1M6U1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
            Uniprot:F1M6U1
        Length = 252

 Score = 150 (57.9 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    RPRGF F+ Y T EE   A+  
Sbjct:     8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    68 RPHK-VDGRVVEPKRAVSRED 87


>UNIPROTKB|D4A2D2 [details] [associations]
            symbol:D4A2D2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
            IPI:IPI00559583 ProteinModelPortal:D4A2D2
            Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
        Length = 262

 Score = 150 (57.9 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 34/81 (41%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+F T+++SLR+ F+ +G L E  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  E A SR +
Sbjct:    75 RPHK-VDGRVVEPERAVSRED 94


>UNIPROTKB|Q9BRL6 [details] [associations]
            symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
            EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
            IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
            UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
            SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
            PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
            UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
            HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
            EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
            CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
        Length = 282

 Score = 151 (58.2 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 33/91 (36%), Positives = 55/91 (60%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             L V  L++RTS DSLR  F+ +G++ +V +  +     PRGFAF+R+    +++ A   M
Sbjct:    16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75

Query:   140 HGKFLDGRVIFVEIAK-SRAELRQAFKNNPR 169
              G  LDGR + V++A+  R +L ++ +  PR
Sbjct:    76 DGAELDGRELRVQVARYGRRDLPRSRQGEPR 106


>UNIPROTKB|F1NZD3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
            InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
            EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
            Uniprot:F1NZD3
        Length = 385

 Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>UNIPROTKB|F1RQ90 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
            UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
            Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
            Uniprot:F1RQ90
        Length = 390

 Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>RGD|1565256 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
            complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0070062
            "extracellular vesicular exosome" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
            GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
            EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
            UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
            STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
            Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
            InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
            Uniprot:Q4V898
        Length = 390

 Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>UNIPROTKB|D3JUI8 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9913 "Bos taurus" [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
            "extracellular vesicular exosome" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
            evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0001047 "core promoter
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
            EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
            Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
            NextBio:20869035 Uniprot:D3JUI8
        Length = 391

 Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>UNIPROTKB|P38159 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
            euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
            GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
            EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
            EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
            IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
            RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
            ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
            MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
            SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
            Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
            KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
            MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
            InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
            NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
            Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
        Length = 391

 Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>UNIPROTKB|A5A6M3 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9598 "Pan troglodytes" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
            ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
            KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
        Length = 391

 Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>UNIPROTKB|Q4R7F0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
            Uniprot:Q4R7F0
        Length = 391

 Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>MGI|MGI:1343044 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X chromosome"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
            EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
            EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
            RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
            SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
            PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
            Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
            UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
            Genevestigator:Q9WV02 Uniprot:Q9WV02
        Length = 391

 Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>UNIPROTKB|E2R068 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
            Uniprot:E2R068
        Length = 392

 Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:    10 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 69

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    70 MNGKSLDGKAIKVEQA 85


>UNIPROTKB|E1C875 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
            IPI:IPI00681985 ProteinModelPortal:E1C875
            Ensembl:ENSGALT00000031186 Uniprot:E1C875
        Length = 182

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 34/77 (44%), Positives = 46/77 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P T L V GLS  T+E  LR  F  +G L  VN+V D+   R RGFAF+ +   ++S+ A
Sbjct:    16 PNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 75

Query:   136 IEGMHGKFLDGRVIFVE 152
             +E  +G  LDGR I V+
Sbjct:    76 MEHANGMELDGRRIRVD 92


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 26/78 (33%), Positives = 47/78 (60%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             ++L+V  L++R  +  L   F  +G +    +VMD+   R RGF F+   +++E++ AI 
Sbjct:     3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62

Query:   138 GMHGKFLDGRVIFVEIAK 155
             G++GK +DGR + V  A+
Sbjct:    63 GLNGKEMDGRNLMVNEAR 80


>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
            symbol:srsf2b "serine/arginine-rich splicing
            factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
            IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
            Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
            InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
        Length = 220

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 28/78 (35%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS ++LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGAILDGRELRVQMAR 91


>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
            symbol:srsf2a "serine/arginine-rich splicing
            factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
            HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
            HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
            EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
            UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
            Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
            InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
        Length = 225

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 28/78 (35%), Positives = 50/78 (64%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L V  L++RTS ++LR  F+ +G++ +V +  D+     RGFAF+R+  + ++  A++
Sbjct:    14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query:   138 GMHGKFLDGRVIFVEIAK 155
              M G  LDGR + V++A+
Sbjct:    74 AMDGALLDGRELRVQMAR 91


>WB|WBGene00004390 [details] [associations]
            symbol:rnp-7 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
            GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
            HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
            GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
            ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
            MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
            EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
            KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
            InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
        Length = 332

 Score = 152 (58.6 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 35/121 (28%), Positives = 66/121 (54%)

Query:    39 KRRDFDSLFSLRQGRGRGACFPLACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAF 98
             KRR  D L + +  +G      +A   P+ +  ++  P   LFV  +++ TSE  LR  F
Sbjct:    71 KRRQKDELLAYKVEQG------IATWNPAENPRASEDPYRTLFVGRINYETSESKLRREF 124

Query:    99 QGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRA 158
             + +G++ ++ +V D+ A +PRG+AF+ Y+ + E   A +   G  +DG+ + V+  + R 
Sbjct:   125 EAYGKIKKLTMVHDE-AGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDYERGRT 183

Query:   159 E 159
             +
Sbjct:   184 Q 184


>TAIR|locus:2173338 [details] [associations]
            symbol:SC35 "ortholog of human splicing factor SC35"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
            "membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0030422 "production of siRNA involved in RNA interference"
            evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
            GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
            EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
            RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
            UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
            PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
            EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
            TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
            ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
        Length = 303

 Score = 151 (58.2 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 30/76 (39%), Positives = 49/76 (64%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             L V  ++FRT+ D L   F  +G++V+V +  D+     RGFAF+RY  ++E+ +A+E +
Sbjct:    18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77

Query:   140 HGKFLDGRVIFVEIAK 155
              G+ +DGR I V+ AK
Sbjct:    78 DGRVVDGREITVQFAK 93


>MGI|MGI:1343045 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
            selection" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
            GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
            IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
            UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
            STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
            Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
            UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
            NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
        Length = 388

 Score = 153 (58.9 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 30/76 (39%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VE+ L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>UNIPROTKB|F8W646 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
            ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
            Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
            Uniprot:F8W646
        Length = 156

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|Q74DJ2 [details] [associations]
            symbol:GSU1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 32/91 (35%), Positives = 52/91 (57%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             L+V  +S+  +ED LR  F   G +  V+++ D    R +G  ++R  TEEE++ AIE +
Sbjct:     5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64

Query:   140 HGKFLDGRVIFVEIAKSRAELRQAFKNNPRQ 170
              G  L  RVI V +A+ +   +QA +  PR+
Sbjct:    65 DGALLRNRVITVSVARPQ---KQATRPAPRR 92


>TIGR_CMR|GSU_1324 [details] [associations]
            symbol:GSU_1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 32/91 (35%), Positives = 52/91 (57%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             L+V  +S+  +ED LR  F   G +  V+++ D    R +G  ++R  TEEE++ AIE +
Sbjct:     5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64

Query:   140 HGKFLDGRVIFVEIAKSRAELRQAFKNNPRQ 170
              G  L  RVI V +A+ +   +QA +  PR+
Sbjct:    65 DGALLRNRVITVSVARPQ---KQATRPAPRR 92


>TAIR|locus:2027438 [details] [associations]
            symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
            evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
            GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
            EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
            UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
            SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
            EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
            GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
            OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
            Genevestigator:Q9FZ84 Uniprot:Q9FZ84
        Length = 155

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 31/79 (39%), Positives = 49/79 (62%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             +++FV GLS  T  + L+ AF  FG++V+  +V+D+ +   RGF F+ Y + E +  A++
Sbjct:    36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95

Query:   138 GMHGKFLDGRVIFVEIAKS 156
              M  K LDGR+I V  A S
Sbjct:    96 AMQNKELDGRIIGVHPADS 114


>TAIR|locus:2179624 [details] [associations]
            symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
            UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
            EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
            OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
        Length = 172

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 43/149 (28%), Positives = 72/149 (48%)

Query:    13 YFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPL---ACLPPSPH 69
             YF ++QNL        +P   T  TI R    S F   + +    C PL   +C+     
Sbjct:    17 YFGMSQNL-------RTPI-LTMSTIPRDRLISSFHTARSK---LCSPLRTISCVAGDDE 65

Query:    70 SLSTCQ-PKT--RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRY 126
             +      P +   LFV G S   SE  L+  F  FGQ+  V ++ ++   +  G+ ++ +
Sbjct:    66 TREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWF 125

Query:   127 ATEEESRRAIEGMHGKFLDGRVIFVEIAK 155
              ++E+++ A+E M+GKF DGR I V+  +
Sbjct:   126 NSKEDAQSAVEAMNGKFFDGRFILVKFGQ 154


>WB|WBGene00011156 [details] [associations]
            symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
            RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
            IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
            GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
            WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
            Uniprot:O45713
        Length = 85

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             ++V    F+T+ED L N F   G +  V +V D+   RPRGFAF+ +  E  ++RA++  
Sbjct:     6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65

Query:   140 HGKFLDGRVIFVEIAKSR 157
             +G   +GR + V +A++R
Sbjct:    66 NGVDFNGRALRVNLAQNR 83


>UNIPROTKB|O45713 [details] [associations]
            symbol:R09B3.3 "Protein R09B3.3" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
            SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
            EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
            UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
            OMA:KRVHIPT NextBio:878159 Uniprot:O45713
        Length = 85

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 28/78 (35%), Positives = 47/78 (60%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             ++V    F+T+ED L N F   G +  V +V D+   RPRGFAF+ +  E  ++RA++  
Sbjct:     6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65

Query:   140 HGKFLDGRVIFVEIAKSR 157
             +G   +GR + V +A++R
Sbjct:    66 NGVDFNGRALRVNLAQNR 83


>UNIPROTKB|Q29RT0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
            of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
            euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
            RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
            SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
            KEGG:bta:617969 KEGG:bta:782306 CTD:27288
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
            NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
        Length = 396

 Score = 153 (58.9 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 31/80 (38%), Positives = 49/80 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T E SL   F  +G++ EV L+ D+  N+ RGFAF+ + +  +++ A+  
Sbjct:     9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRD 68

Query:   139 MHGKFLDGRVIFVEIAKSRA 158
             M+GK LDG+ I V  A   A
Sbjct:    69 MNGKSLDGKAIKVAQATKPA 88


>UNIPROTKB|B4DQI6 [details] [associations]
            symbol:TRA2A "cDNA FLJ50614, highly similar to
            Transformer-2 protein homolog" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
            UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
            EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
            Uniprot:B4DQI6
        Length = 180

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 34/77 (44%), Positives = 46/77 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P T L V GLS  T+E  LR  F  +G L  VN+V D+   R RGFAF+ +   ++S+ A
Sbjct:    16 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 75

Query:   136 IEGMHGKFLDGRVIFVE 152
             +E  +G  LDGR I V+
Sbjct:    76 MERANGMELDGRRIRVD 92


>UNIPROTKB|B4DUA9 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
            EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
            SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
        Length = 181

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 34/77 (44%), Positives = 46/77 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P T L V GLS  T+E  LR  F  +G L  VN+V D+   R RGFAF+ +   ++S+ A
Sbjct:    16 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 75

Query:   136 IEGMHGKFLDGRVIFVE 152
             +E  +G  LDGR I V+
Sbjct:    76 MERANGMELDGRRIRVD 92


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 27/79 (34%), Positives = 49/79 (62%)

Query:    77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136
             + +++V  LS+  + D L++ F  +G++ E  L+MD+   R +GFAF+ Y T++ ++ A+
Sbjct:    17 QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76

Query:   137 EGMHGKFLDGRVIFVEIAK 155
                +G  L GR I V IA+
Sbjct:    77 SKANGIDLQGRKIRVNIAR 95


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 27/79 (34%), Positives = 49/79 (62%)

Query:    77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136
             + +++V  LS+  + D L++ F  +G++ E  L+MD+   R +GFAF+ Y T++ ++ A+
Sbjct:    17 QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76

Query:   137 EGMHGKFLDGRVIFVEIAK 155
                +G  L GR I V IA+
Sbjct:    77 SKANGIDLQGRKIRVNIAR 95


>TAIR|locus:2025092 [details] [associations]
            symbol:SR45a "serine/arginine rich-like protein 45a"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0008380
            "RNA splicing" evidence=NAS] [GO:0009644 "response to high light
            intensity" evidence=IMP] [GO:0043484 "regulation of RNA splicing"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0008380
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009644
            GO:GO:0030529 GO:GO:0043484 eggNOG:COG0724 HSSP:Q14103
            EMBL:BT005797 IPI:IPI00529615 RefSeq:NP_563787.2 UniGene:At.24511
            ProteinModelPortal:Q84TH4 SMR:Q84TH4 STRING:Q84TH4
            EnsemblPlants:AT1G07350.1 GeneID:837246 KEGG:ath:AT1G07350
            TAIR:At1g07350 HOGENOM:HOG000239942 InParanoid:Q84TH4 OMA:SYSPYYR
            ProtClustDB:CLSN2918464 ArrayExpress:Q84TH4 Genevestigator:Q84TH4
            Uniprot:Q84TH4
        Length = 382

 Score = 151 (58.2 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 43/140 (30%), Positives = 68/140 (48%)

Query:    18 QNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSLSTCQPK 77
             Q +L + L   + +P + ++ + R   SL    + RGR     L+  P    S     P 
Sbjct:    16 QRVLEYPLRLENRSPMS-YSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPG 74

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
               L+V+GLS R +E  L + F   G++ +V+LV+D      RGF F+   +  ++ R I 
Sbjct:    75 NSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIR 134

Query:   138 GMHGKFLDGRVIFVEIAKSR 157
              +    L GRVI VE A+ R
Sbjct:   135 SLDHSVLQGRVITVEKARRR 154


>UNIPROTKB|E2REM2 [details] [associations]
            symbol:E2REM2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
            GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
            Ensembl:ENSCAFT00000027720 Uniprot:E2REM2
        Length = 207

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 38/98 (38%), Positives = 55/98 (56%)

Query:    62 ACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGF 121
             +CL  SP      Q   +LF+ GLSF T+++SLR+ F+ +G L    ++ D    R RGF
Sbjct:     1 SCLSQSPKEPEQLQ---KLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGF 56

Query:   122 AFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAE 159
              F+ YAT EE   A+     K +DGRV+  + A SR +
Sbjct:    57 GFVTYATVEEVDAAMNARPHK-VDGRVVEPKRAVSRED 93


>UNIPROTKB|I3LQ36 [details] [associations]
            symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU210877
            Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
        Length = 161

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 31/80 (38%), Positives = 45/80 (56%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GL+F T E +L + F  FG + EV +V D    R +GF F+ +   E +  A+  
Sbjct:     7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66

Query:   139 MHGKFLDGRVIFVEIAKSRA 158
              +G+ LDGR I V+ A   A
Sbjct:    67 TNGESLDGRQIHVDHAGKSA 86


>UNIPROTKB|Q8N7X1 [details] [associations]
            symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
            RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
            SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
            Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
            UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
            neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
            HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
            OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
            CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
        Length = 1067

 Score = 157 (60.3 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 31/89 (34%), Positives = 59/89 (66%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+ +T E +L+  F  +G +++V L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARD 68

Query:   139 MHGKFLDGRVIFVEIAKSRAELRQAFKNN 167
             M+GK+LDG+ I V  A++   ++ AFK++
Sbjct:    69 MNGKYLDGKAIMV--AQT---IKPAFKSS 92


>UNIPROTKB|F1NPM7 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
            OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
            Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
        Length = 277

 Score = 147 (56.8 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 34/77 (44%), Positives = 46/77 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P T L V GLS  T+E  LR  F  +G L  VN+V D+   R RGFAF+ +   ++S+ A
Sbjct:   119 PNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 178

Query:   136 IEGMHGKFLDGRVIFVE 152
             +E  +G  LDGR I V+
Sbjct:   179 MEHANGMELDGRRIRVD 195


>UNIPROTKB|E2R4B2 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
            Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
        Length = 278

 Score = 147 (56.8 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 42/131 (32%), Positives = 66/131 (50%)

Query:    23 HNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACF-PLACLPPSPHSLSTCQPKTRLF 81
             H+  R++ + +   + +RR     ++    R R     P++       S +   P T L 
Sbjct:    63 HSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLG 122

Query:    82 VSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141
             V GLS  T+E  LR  F  +G L  VN+V D+   R RGFAF+ +   ++S+ A+E  +G
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:   142 KFLDGRVIFVE 152
               LDGR I V+
Sbjct:   183 MELDGRRIRVD 193


>UNIPROTKB|Q06AA6 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
            SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
            Uniprot:Q06AA6
        Length = 279

 Score = 147 (56.8 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 42/131 (32%), Positives = 66/131 (50%)

Query:    23 HNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACF-PLACLPPSPHSLSTCQPKTRLF 81
             H+  R++ + +   + +RR     ++    R R     P++       S +   P T L 
Sbjct:    63 HSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLG 122

Query:    82 VSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141
             V GLS  T+E  LR  F  +G L  VN+V D+   R RGFAF+ +   ++S+ A+E  +G
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:   142 KFLDGRVIFVE 152
               LDGR I V+
Sbjct:   183 MELDGRRIRVD 193


>UNIPROTKB|Q2KJ71 [details] [associations]
            symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
            OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
            IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
            STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
            KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
        Length = 281

 Score = 147 (56.8 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 42/131 (32%), Positives = 66/131 (50%)

Query:    23 HNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACF-PLACLPPSPHSLSTCQPKTRLF 81
             H+  R++ + +   + +RR     ++    R R     P++       S +   P T L 
Sbjct:    63 HSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLG 122

Query:    82 VSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141
             V GLS  T+E  LR  F  +G L  VN+V D+   R RGFAF+ +   ++S+ A+E  +G
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:   142 KFLDGRVIFVE 152
               LDGR I V+
Sbjct:   183 MELDGRRIRVD 193


>UNIPROTKB|Q13595 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
            IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
            UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
            IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
            DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
            Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
            CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
            MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
            HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
            OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
            NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
            GermOnline:ENSG00000164548 Uniprot:Q13595
        Length = 282

 Score = 147 (56.8 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 42/131 (32%), Positives = 66/131 (50%)

Query:    23 HNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACF-PLACLPPSPHSLSTCQPKTRLF 81
             H+  R++ + +   + +RR     ++    R R     P++       S +   P T L 
Sbjct:    63 HSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLG 122

Query:    82 VSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141
             V GLS  T+E  LR  F  +G L  VN+V D+   R RGFAF+ +   ++S+ A+E  +G
Sbjct:   123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 182

Query:   142 KFLDGRVIFVE 152
               LDGR I V+
Sbjct:   183 MELDGRRIRVD 193


>UNIPROTKB|F1Q3G7 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
            GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
            GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
            Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
        Length = 384

 Score = 150 (57.9 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 40/114 (35%), Positives = 60/114 (52%)

Query:    49 LRQGRGRGACFPLACLPPS---PHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLV 105
             +R  +GR    P A        P S    +   +LF+ GLSF T+++SLR+ F+ +G L 
Sbjct:     3 IRDAQGRSLPMPKARRRDKKARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLT 62

Query:   106 EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAE 159
             +  ++ D    R RGF F+ YAT EE   A+     K +DGRV+  + A SR +
Sbjct:    63 DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHK-VDGRVVEPKRAVSRED 115


>UNIPROTKB|D4ACJ8 [details] [associations]
            symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
            ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
        Length = 268

 Score = 146 (56.5 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|O75526 [details] [associations]
            symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
            Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
            EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
            RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
            SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
            PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
            KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
            H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
            HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
            InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
            Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
        Length = 392

 Score = 150 (57.9 bits), Expect = 5.3e-10, P = 5.3e-10
 Identities = 31/80 (38%), Positives = 49/80 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARD 68

Query:   139 MHGKFLDGRVIFVEIAKSRA 158
             M+GK LDG+ I V  A   A
Sbjct:    69 MNGKSLDGKAIKVAQATKPA 88


>DICTYBASE|DDB_G0285403 [details] [associations]
            symbol:DDB_G0285403 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
            EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
            EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
            InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
        Length = 1035

 Score = 129 (50.5 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
 Identities = 30/94 (31%), Positives = 50/94 (53%)

Query:    60 PLACLPPSPHSL--STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANR 117
             P     P P +L  ST Q ++R++V  L F  +ED +R  F  FG +  + L  D  + +
Sbjct:   568 PTTTTTPIPPTLNQSTSQDQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGK 626

Query:   118 PRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151
              +G+AF+ Y  +E + +A++ M    + GR I V
Sbjct:   627 SKGYAFIEYDNQESAAKALQSMTNYVMCGRAIKV 660

 Score = 100 (40.3 bits), Expect = 0.00062, Sum P(2) = 0.00062
 Identities = 23/89 (25%), Positives = 48/89 (53%)

Query:    66 PSPHSLSTCQP---KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFA 122
             P P+  +   P    +R+++  +++  +ED +R+ F  FG+++   L+ +    + +GF 
Sbjct:   754 PKPNESAPPVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFG 813

Query:   123 FLRYATEEESRRAIEGMHGKFLDGRVIFV 151
             F+ +  ++ +  AI  M+G  L GR I V
Sbjct:   814 FVDFELKKSADDAIATMNGFELLGRSIKV 842

 Score = 52 (23.4 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query:     3 VLGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFT 37
             V G    PTT   ++ +  I + T+ +P PATP +
Sbjct:    90 VNGHQTQPTTTVELSNSTPISSPTKTTPIPATPIS 124


>ZFIN|ZDB-GENE-030131-579 [details] [associations]
            symbol:rbmx "RNA binding motif protein, X-linked"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0071347 "cellular response to interleukin-1" evidence=ISS]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
            GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
            EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
            UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
            PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
            GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
            OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
            Bgee:Q7ZWA3 Uniprot:Q7ZWA3
        Length = 379

 Score = 149 (57.5 bits), Expect = 6.4e-10, P = 6.4e-10
 Identities = 34/90 (37%), Positives = 53/90 (58%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  TSE  L   F  FG++ EV L+ D+  N+ RGFAF+ Y    +++ A   
Sbjct:     9 KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAARE 68

Query:   139 MHGKFLDGRVIFVEIAKSRAELRQAFKNNP 168
             M+GK LDG+ I VE A ++ +   + +  P
Sbjct:    69 MNGKPLDGKPIKVEQA-TKPQFETSGRRGP 97


>RGD|1306751 [details] [associations]
            symbol:Rbmxrtl "RNA binding motif protein, X chromosome
            retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006376 "mRNA splice site selection"
            evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0051260 "protein homooligomerization"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
            GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
            IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
            SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
            Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
            UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
            Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
        Length = 388

 Score = 149 (57.5 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 29/76 (38%), Positives = 49/76 (64%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VE+ L+ D+  N+ RGFAF+ + +  +++     
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>RGD|1585845 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
            Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
        Length = 388

 Score = 149 (57.5 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 29/76 (38%), Positives = 49/76 (64%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VE+ L+ D+  N+ RGFAF+ + +  +++     
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68

Query:   139 MHGKFLDGRVIFVEIA 154
             M+GK LDG+ I VE A
Sbjct:    69 MNGKSLDGKAIKVEQA 84


>GENEDB_PFALCIPARUM|PF11_0083 [details] [associations]
            symbol:PF11_0083 "nucleic acid binding factor,
            putative" species:5833 "Plasmodium falciparum" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE014186 RefSeq:XP_001347758.2 ProteinModelPortal:Q8IIT2
            EnsemblProtists:PF11_0083:mRNA GeneID:810634 KEGG:pfa:PF11_0083
            EuPathDB:PlasmoDB:PF3D7_1107100 HOGENOM:HOG000282219
            ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
        Length = 588

 Score = 136 (52.9 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV+ L+  T+ + LRN F+ FG+++++ +  D   NRPRG AF+ +   E  +  +  
Sbjct:   503 KLFVTKLNSATTIEKLRNYFEKFGEIIDIYMPNDVYTNRPRGIAFVTFLDNESVKNILSD 562

Query:   139 MHGK-FLDGRVIFVEIA 154
              H K  +DG+ + +++A
Sbjct:   563 EHSKHIIDGKEVVLDLA 579

 Score = 38 (18.4 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query:    14 FNINQNLLIHNLTRHSP---APATPFTIKRRDFDSLFS 48
             F   Q++ +  + +  P   A   PF   ++D +  FS
Sbjct:   210 FQNEQSVYVDEVIKEYPRIFATRLPFEASKKDLEKYFS 247


>UNIPROTKB|Q8IIT2 [details] [associations]
            symbol:PF11_0083 "Nucleic acid binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0005575
            "cellular_component" evidence=ND] [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE014186 RefSeq:XP_001347758.2
            ProteinModelPortal:Q8IIT2 EnsemblProtists:PF11_0083:mRNA
            GeneID:810634 KEGG:pfa:PF11_0083 EuPathDB:PlasmoDB:PF3D7_1107100
            HOGENOM:HOG000282219 ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
        Length = 588

 Score = 136 (52.9 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
 Identities = 25/77 (32%), Positives = 47/77 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV+ L+  T+ + LRN F+ FG+++++ +  D   NRPRG AF+ +   E  +  +  
Sbjct:   503 KLFVTKLNSATTIEKLRNYFEKFGEIIDIYMPNDVYTNRPRGIAFVTFLDNESVKNILSD 562

Query:   139 MHGK-FLDGRVIFVEIA 154
              H K  +DG+ + +++A
Sbjct:   563 EHSKHIIDGKEVVLDLA 579

 Score = 38 (18.4 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query:    14 FNINQNLLIHNLTRHSP---APATPFTIKRRDFDSLFS 48
             F   Q++ +  + +  P   A   PF   ++D +  FS
Sbjct:   210 FQNEQSVYVDEVIKEYPRIFATRLPFEASKKDLEKYFS 247


>UNIPROTKB|Q66II8 [details] [associations]
            symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
            [GO:0043484 "regulation of RNA splicing" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
            GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
            Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
            OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
            RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
            STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
            KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
            OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
        Length = 471

 Score = 150 (57.9 bits), Expect = 7.5e-10, P = 7.5e-10
 Identities = 31/93 (33%), Positives = 55/93 (59%)

Query:    68 PHSLSTCQP---KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             PH+    Q    KT LFV+ +++ T+E  LR  F+ +G +  +++V +K + +PRG+AF+
Sbjct:    91 PHNDQNAQGDAFKT-LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFI 149

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
              Y  E +   A +   GK +DGR + V++ + R
Sbjct:   150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182


>UNIPROTKB|F8VXY0 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
            Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
            Uniprot:F8VXY0
        Length = 304

 Score = 146 (56.5 bits), Expect = 7.9e-10, P = 7.9e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>MGI|MGI:1933972 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0042802 "identical protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
            IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
            SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
            PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
            CleanEx:MM_TRA2A Genevestigator:Q6PFR5
            GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
        Length = 281

 Score = 145 (56.1 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 34/77 (44%), Positives = 46/77 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P T L V GLS  T+E  LR  F  +G L  VN+V D+   R RGFAF+ +   ++S+ A
Sbjct:   115 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 174

Query:   136 IEGMHGKFLDGRVIFVE 152
             +E  +G  LDGR I V+
Sbjct:   175 MERANGMELDGRRIRVD 191


>UNIPROTKB|F8VSB5 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
            Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
            Uniprot:F8VSB5
        Length = 306

 Score = 146 (56.5 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>RGD|1562563 [details] [associations]
            symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0042802 "identical protein binding"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
            UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
            Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
            Uniprot:B1WC25
        Length = 282

 Score = 145 (56.1 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 34/77 (44%), Positives = 46/77 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P T L V GLS  T+E  LR  F  +G L  VN+V D+   R RGFAF+ +   ++S+ A
Sbjct:   115 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 174

Query:   136 IEGMHGKFLDGRVIFVE 152
             +E  +G  LDGR I V+
Sbjct:   175 MERANGMELDGRRIRVD 191


>UNIPROTKB|F8VRQ1 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
            Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
            Uniprot:F8VRQ1
        Length = 307

 Score = 146 (56.5 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|J3KQA8 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
        Length = 102

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 30/71 (42%), Positives = 45/71 (63%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVI 149
                K +DGRV+
Sbjct:    75 RPHK-VDGRVV 84


>UNIPROTKB|F1M5N1 [details] [associations]
            symbol:F1M5N1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
            ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
        Length = 207

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 30/71 (42%), Positives = 45/71 (63%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70

Query:   139 MHGKFLDGRVI 149
                K +DGRV+
Sbjct:    71 RPHK-VDGRVV 80


>UNIPROTKB|E2QRU8 [details] [associations]
            symbol:SNRNP70 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
            Uniprot:E2QRU8
        Length = 386

 Score = 148 (57.2 bits), Expect = 8.5e-10, P = 8.5e-10
 Identities = 31/93 (33%), Positives = 54/93 (58%)

Query:    68 PHSLSTCQP---KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             PH+    Q    KT LFV+ +++ T+E  LR  F+ +G +  +++V  K + +PRG+AF+
Sbjct:    91 PHNDPNAQGDAFKT-LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI 149

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
              Y  E +   A +   GK +DGR + V++ + R
Sbjct:   150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182


>UNIPROTKB|P09867 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
            GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
            RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
            SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
            GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
            OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
        Length = 320

 Score = 146 (56.5 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|F8W6I7 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
            Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
            Uniprot:F8W6I7
        Length = 320

 Score = 146 (56.5 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|Q06A94 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
            EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
            SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
            Uniprot:Q06A94
        Length = 320

 Score = 146 (56.5 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|A5A6H4 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
            GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
            EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
            RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
            UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
            Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
            GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
            CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
            Uniprot:A5A6H4
        Length = 320

 Score = 146 (56.5 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>MGI|MGI:104820 [details] [associations]
            symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
            import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
            EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
            EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
            EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
            EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
            IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
            UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
            IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
            PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
            UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
            Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
            GermOnline:ENSMUSG00000058922 Uniprot:P49312
        Length = 320

 Score = 146 (56.5 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>RGD|69234 [details] [associations]
            symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
           species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
           evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
           spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
           evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
           [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
           evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
           evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
           "cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
           evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
           [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
           "ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
           "intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
           transport" evidence=IEA] [GO:0051168 "nuclear export"
           evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
           [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
           InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
           SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
           GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
           GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
           GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
           HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
           CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
           UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
           STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
           KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
           Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
        Length = 320

 Score = 146 (56.5 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|Q5I0M7 [details] [associations]
            symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
            UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
            Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
        Length = 320

 Score = 146 (56.5 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|E1BLD4 [details] [associations]
            symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
            EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
            Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
        Length = 756

 Score = 152 (58.6 bits), Expect = 9.5e-10, P = 9.5e-10
 Identities = 34/98 (34%), Positives = 56/98 (57%)

Query:    68 PHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYA 127
             P        K RL +  LSF+ SED L+  F  FG ++EVN+   K   + RGFAF+++ 
Sbjct:   104 PKKAKVADKKARLIIRNLSFKCSEDDLKTVFSQFGTILEVNIPR-KPDGKMRGFAFVQFK 162

Query:   128 TEEESRRAIEGMHGKFLDGRVIFVE--IAKSRAELRQA 163
                E+ +A++GM+ K + GR + V+  +AK + +  Q+
Sbjct:   163 NLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKSTQS 200

 Score = 109 (43.4 bits), Expect = 0.00087, P = 0.00087
 Identities = 29/89 (32%), Positives = 47/89 (52%)

Query:    77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136
             KT +F+  LSF + E+ L    Q FG L  V +V+       +G AF ++ T+E +++ +
Sbjct:   332 KT-VFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCL 390

Query:   137 EGMH------GKFLDGRVIFVEIAKSRAE 159
             E         G  LDGR + V++A +R E
Sbjct:   391 EAASPEAEGGGLKLDGRQLKVDLAVTRDE 419


>UNIPROTKB|F8W1S7 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
            Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
            Uniprot:F8W1S7
        Length = 330

 Score = 146 (56.5 bits), Expect = 9.9e-10, P = 9.9e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|Q5JQF3 [details] [associations]
            symbol:PABPC5 "Polyadenylate-binding protein 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
            IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
            HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
        Length = 218

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/92 (31%), Positives = 54/92 (58%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T +FV  +     ++ L+  F  +G    V ++ D  + + +GF F+RY T E +++A+ 
Sbjct:    35 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 93

Query:   138 GMHGKFLDGRVIFVEIAKSR----AELRQAFK 165
              +HGK +DG+V++V  A+ +    AELR+ F+
Sbjct:    94 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFE 125


>UNIPROTKB|F1RVD1 [details] [associations]
            symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
            GeneTree:ENSGT00700000104347 KO:K13044 EMBL:CU627987
            RefSeq:XP_003129409.3 UniGene:Ssc.55768 Ensembl:ENSSSCT00000010127
            GeneID:100511704 KEGG:ssc:100511704 Uniprot:F1RVD1
        Length = 216

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 30/98 (30%), Positives = 52/98 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    +L   +P  ++FV GLS  TSE+ ++  F  FG++  + L MD   N  RGF F+
Sbjct:    16 PKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 75

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQ 162
              Y  EE  ++ +E  + +   G+   +++A+ +   RQ
Sbjct:    76 TYTDEEPVKKLLESRYHQIGSGKCE-IKVAQPKEVYRQ 112


>UNIPROTKB|P08621 [details] [associations]
            symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003723 "RNA binding"
            evidence=IMP] [GO:0043484 "regulation of RNA splicing"
            evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
            [GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
            GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
            PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
            Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
            EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
            EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
            EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
            EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
            IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
            PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
            PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
            SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
            STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
            PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
            Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
            GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
            neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
            ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
            NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
            Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
        Length = 437

 Score = 148 (57.2 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 31/93 (33%), Positives = 54/93 (58%)

Query:    68 PHSLSTCQP---KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             PH+    Q    KT LFV+ +++ T+E  LR  F+ +G +  +++V  K + +PRG+AF+
Sbjct:    91 PHNDPNAQGDAFKT-LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI 149

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
              Y  E +   A +   GK +DGR + V++ + R
Sbjct:   150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182


>UNIPROTKB|Q1RMR2 [details] [associations]
            symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
            species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
            evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
            InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
            RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
            STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
            KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
            InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
            ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
        Length = 439

 Score = 148 (57.2 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 31/93 (33%), Positives = 54/93 (58%)

Query:    68 PHSLSTCQP---KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             PH+    Q    KT LFV+ +++ T+E  LR  F+ +G +  +++V  K + +PRG+AF+
Sbjct:    91 PHNDPNAQGDAFKT-LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI 149

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
              Y  E +   A +   GK +DGR + V++ + R
Sbjct:   150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182


>UNIPROTKB|F6V5G7 [details] [associations]
            symbol:SNRNP70 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
            GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
            EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
            GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
        Length = 439

 Score = 148 (57.2 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 31/93 (33%), Positives = 54/93 (58%)

Query:    68 PHSLSTCQP---KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             PH+    Q    KT LFV+ +++ T+E  LR  F+ +G +  +++V  K + +PRG+AF+
Sbjct:    91 PHNDPNAQGDAFKT-LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI 149

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
              Y  E +   A +   GK +DGR + V++ + R
Sbjct:   150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182


>MGI|MGI:98341 [details] [associations]
            symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISO]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:98341 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
            InterPro:IPR022023 Pfam:PF12220 CTD:6625
            GeneTree:ENSGT00530000063750 OrthoDB:EOG4CJVJ7 ChiTaRS:SNRNP70
            EMBL:AK133115 EMBL:AK146729 EMBL:X15769 EMBL:X15770 EMBL:X15771
            EMBL:X15772 EMBL:X15774 EMBL:X15775 EMBL:X15776 IPI:IPI00230541
            IPI:IPI00625105 PIR:S04336 PIR:S04824 RefSeq:NP_033250.3
            UniGene:Mm.216386 ProteinModelPortal:Q62376 SMR:Q62376
            MINT:MINT-1868298 STRING:Q62376 PhosphoSite:Q62376 PaxDb:Q62376
            PRIDE:Q62376 Ensembl:ENSMUST00000074575 GeneID:20637 KEGG:mmu:20637
            HOVERGEN:HBG094947 InParanoid:Q62376 NextBio:299035 Bgee:Q62376
            Genevestigator:Q62376 GermOnline:ENSMUSG00000063511 Uniprot:Q62376
        Length = 448

 Score = 148 (57.2 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 31/93 (33%), Positives = 54/93 (58%)

Query:    68 PHSLSTCQP---KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             PH+    Q    KT LFV+ +++ T+E  LR  F+ +G +  +++V  K + +PRG+AF+
Sbjct:    91 PHNDPNAQGDAFKT-LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI 149

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
              Y  E +   A +   GK +DGR + V++ + R
Sbjct:   150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182


>UNIPROTKB|I3LNE5 [details] [associations]
            symbol:SNRNP70 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 OMA:KKSRGYL
            InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
            EMBL:FP102974 Ensembl:ENSSSCT00000022304 Uniprot:I3LNE5
        Length = 452

 Score = 148 (57.2 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 31/93 (33%), Positives = 54/93 (58%)

Query:    68 PHSLSTCQP---KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             PH+    Q    KT LFV+ +++ T+E  LR  F+ +G +  +++V  K + +PRG+AF+
Sbjct:    91 PHNDPNAQGDAFKT-LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFI 149

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
              Y  E +   A +   GK +DGR + V++ + R
Sbjct:   150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182


>UNIPROTKB|Q32P51 [details] [associations]
            symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
            A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
            EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
            IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
            UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
            IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
            PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
            Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
            KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
            HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
            HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
            OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
            Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
            Uniprot:Q32P51
        Length = 320

 Score = 145 (56.1 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 36/92 (39%), Positives = 55/92 (59%)

Query:    70 SLSTCQPKT--RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYA 127
             S S  +P+   +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YA
Sbjct:     4 SASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63

Query:   128 TEEESRRAIEGMHGKFLDGRVIFVEIAKSRAE 159
             T EE   A+     K +DGRV+  + A SR +
Sbjct:    64 TVEEVDAAMNTTPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|D4A491 [details] [associations]
            symbol:D4A491 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            IPI:IPI00560785 ProteinModelPortal:D4A491
            Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
        Length = 239

 Score = 141 (54.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 32/81 (39%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:     8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K ++GRV+  + A SR +
Sbjct:    68 RPHK-VNGRVVEPKRAVSRED 87


>POMBASE|SPAC25G10.01 [details] [associations]
            symbol:SPAC25G10.01 "RNA-binding protein" species:4896
            "Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
            RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
            EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
            OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
        Length = 297

 Score = 144 (55.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 29/76 (38%), Positives = 46/76 (60%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             LFVSG++ R  ED L+  F  FG +  V ++ + +    RGF FL ++T EE+  AI+ +
Sbjct:   103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162

Query:   140 HGKFLDGRVIFVEIAK 155
             + +   GRV+ V+ AK
Sbjct:   163 NSQEFYGRVLNVQKAK 178


>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
            symbol:tra2a "transformer-2 alpha" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
            UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
            Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
            InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
        Length = 297

 Score = 144 (55.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 33/77 (42%), Positives = 46/77 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P T L V GLS  T+E  LR  F  +G L  VN+V D+   R RGFAF+ +   ++++ A
Sbjct:   133 PNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEA 192

Query:   136 IEGMHGKFLDGRVIFVE 152
             +E  +G  LDGR I V+
Sbjct:   193 MERANGMELDGRRIRVD 209


>UNIPROTKB|F1PVY3 [details] [associations]
            symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
            Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
        Length = 301

 Score = 144 (55.7 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 38/98 (38%), Positives = 55/98 (56%)

Query:    62 ACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGF 121
             +CL  SP      Q   +LF+ GLSF T+++SLR+ F+ +G L    ++ D    R RGF
Sbjct:     1 SCLSQSPKEPEQLQ---KLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGF 56

Query:   122 AFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAE 159
              F+ YAT EE   A+     K +DGRV+  + A SR +
Sbjct:    57 GFVTYATVEEVDAAMNARPHK-VDGRVVEPKRAVSRED 93


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 30/76 (39%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68

Query:   139 MHGKFLDGRVIFVEIA 154
             ++GK LDG+ I VE A
Sbjct:    69 LNGKALDGKPIKVEQA 84


>UNIPROTKB|P09651 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
            [GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
            [GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
            "single-stranded RNA binding" evidence=IC] [GO:0005654
            "nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
            [GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
            export" evidence=IDA] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
            filament cytoskeleton" evidence=IDA] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
            GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
            Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
            Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
            GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
            GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
            EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
            EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
            EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
            IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
            RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
            UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
            PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
            PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
            PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
            PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
            PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
            ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
            MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
            SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
            Ensembl:ENST00000340913 Ensembl:ENST00000546500
            Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
            KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
            GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
            H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
            MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
            InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
            ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
            GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
            CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
            Uniprot:P09651
        Length = 372

 Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|E2QYP1 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
            ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
            NextBio:20853043 Uniprot:E2QYP1
        Length = 373

 Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|D4ACJ7 [details] [associations]
            symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
            EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
            OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
            Uniprot:D4ACJ7
        Length = 373

 Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT EE   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|A9UMT9 [details] [associations]
            symbol:LOC100135403 "LOC100135403 protein" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
            EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
            STRING:A9UMT9 Uniprot:A9UMT9
        Length = 375

 Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 30/76 (39%), Positives = 50/76 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68

Query:   139 MHGKFLDGRVIFVEIA 154
             ++GK LDG+ I VE A
Sbjct:    69 LNGKALDGKPIKVEQA 84


>UNIPROTKB|I3LP80 [details] [associations]
            symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
            EMBL:CU627987 Ensembl:ENSSSCT00000027195 OMA:NVVEMEM Uniprot:I3LP80
        Length = 231

 Score = 140 (54.3 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 30/98 (30%), Positives = 52/98 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    +L   +P  ++FV GLS  TSE+ ++  F  FG++  + L MD   N  RGF F+
Sbjct:    12 PKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 71

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQ 162
              Y  EE  ++ +E  + +   G+   +++A+ +   RQ
Sbjct:    72 TYTDEEPVKKLLESRYHQIGSGKCE-IKVAQPKEVYRQ 108


>ZFIN|ZDB-GENE-040825-2 [details] [associations]
            symbol:snrnp70 "small nuclear ribonucleoprotein 70
            (U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
            KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
            GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
            IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
            STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
            KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
        Length = 495

 Score = 148 (57.2 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 31/93 (33%), Positives = 54/93 (58%)

Query:    68 PHSLSTCQP---KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             PH+ +  Q    KT LFV+ +++ T+E  LR  F+ +G +  + +V +K   +PRG+AF+
Sbjct:    91 PHNDANAQGDAFKT-LFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAFI 149

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
              Y  E +   A +   GK +DGR + V++ + R
Sbjct:   150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182


>UNIPROTKB|H0YA96 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
        Length = 210

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:    73 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 132

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   133 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 171

 Score = 122 (48.0 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 26/78 (33%), Positives = 47/78 (60%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             ++F+ GLS+ T++  L++ F  FG++V+  L +D I  R RGF F+ +   E   + ++ 
Sbjct:     2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61

Query:   139 MHGKFLDGRVIFVEIAKS 156
                K L+G+VI  + AK+
Sbjct:    62 KEHK-LNGKVIDPKRAKA 78


>UNIPROTKB|F5H6R6 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
            EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
            ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
            ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
        Length = 201

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:    15 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 74

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:    75 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 113


>UNIPROTKB|F1RVC9 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            GeneTree:ENSGT00700000104347 EMBL:CU627987
            Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
        Length = 202

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:    16 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 75

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:    76 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 114


>RGD|1309982 [details] [associations]
            symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
            (C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0042802 "identical protein binding"
            evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
            PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
            STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
            Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
        Length = 158

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:    21 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 80

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:    81 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 119


>WB|WBGene00004701 [details] [associations]
            symbol:rsp-4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
            morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
            "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
            GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
            GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
            RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
            ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
            MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
            EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
            UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
            InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
            Uniprot:Q09511
        Length = 196

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 25/78 (32%), Positives = 48/78 (61%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L +  LS++T+ + LR  F+ +G + +V++  DK + + +GF F+R+    ++  A++
Sbjct:    19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78

Query:   138 GMHGKFLDGRVIFVEIAK 155
                GK +DGR + V +AK
Sbjct:    79 RTDGKLVDGRELRVTLAK 96


>UNIPROTKB|Q09511 [details] [associations]
            symbol:rsp-4 "Probable splicing factor,
            arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
            [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
            GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
            GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
            RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
            ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
            MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
            EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
            UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
            InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
            Uniprot:Q09511
        Length = 196

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 25/78 (32%), Positives = 48/78 (61%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L +  LS++T+ + LR  F+ +G + +V++  DK + + +GF F+R+    ++  A++
Sbjct:    19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78

Query:   138 GMHGKFLDGRVIFVEIAK 155
                GK +DGR + V +AK
Sbjct:    79 RTDGKLVDGRELRVTLAK 96


>UNIPROTKB|F1N4Q4 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
            RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
            Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
            NextBio:20869865 Uniprot:F1N4Q4
        Length = 382

 Score = 146 (56.5 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 30/92 (32%), Positives = 53/92 (57%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T +FV        +D L+  F  +G    V ++ D  + + +GF F+RY T E +++A+ 
Sbjct:   199 TNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVL 257

Query:   138 GMHGKFLDGRVIFVEIAKSR----AELRQAFK 165
              +HGK +DG+V++V  A+ +    AELR+ F+
Sbjct:   258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFE 289


>FB|FBgn0028382 [details] [associations]
            symbol:cyp33 "cyclophilin-33" species:7227 "Drosophila
            melanogaster" [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=IEA;NAS] [GO:0003729 "mRNA binding"
            evidence=ISS;NAS] [GO:0006457 "protein folding" evidence=IEA;NAS]
            [GO:0005634 "nucleus" evidence=NAS] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
            "precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] InterPro:IPR000504
            InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
            InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
            PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
            SMART:SM00360 EMBL:AE013599 GO:GO:0006457 GO:GO:0006911
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 GO:GO:0003755
            SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00690000101651
            KO:K09564 EMBL:AF182826 EMBL:AY061421 RefSeq:NP_523773.1
            UniGene:Dm.2854 ProteinModelPortal:Q9V3G3 SMR:Q9V3G3 DIP:DIP-21959N
            IntAct:Q9V3G3 MINT:MINT-1643160 STRING:Q9V3G3 PaxDb:Q9V3G3
            PRIDE:Q9V3G3 EnsemblMetazoa:FBtr0086945 GeneID:36984
            KEGG:dme:Dmel_CG4886 UCSC:CG4886-RA CTD:36984 FlyBase:FBgn0028382
            InParanoid:Q9V3G3 OMA:AFIEFEL OrthoDB:EOG4QV9TN PhylomeDB:Q9V3G3
            GenomeRNAi:36984 NextBio:801358 Bgee:Q9V3G3 GermOnline:CG4886
            Uniprot:Q9V3G3
        Length = 300

 Score = 143 (55.4 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 32/89 (35%), Positives = 48/89 (53%)

Query:    77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136
             K  ++V GL+   +E  L NAF  FG + ++ +  D  + R RGFAF+ Y   E++  AI
Sbjct:     5 KRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64

Query:   137 EGMHGKFLDGRVIFVEIAKSRAELRQAFK 165
             + M+   L GR I V +AK       +FK
Sbjct:    65 DNMNDSELCGRTIRVNLAKPVRVKEDSFK 93


>UNIPROTKB|H0YCC8 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000474378 Uniprot:H0YCC8
        Length = 197

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 27/86 (31%), Positives = 50/86 (58%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T +++        ++SL+  F  FG+ + V ++ D    + +GF F+ Y   E++ +A+E
Sbjct:   104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVE 162

Query:   138 GMHGKFLDGRVIFVEIAKSRAELRQA 163
              M+GK + G++IFV  A+ + E RQA
Sbjct:   163 EMNGKEISGKIIFVGRAQKKVE-RQA 187


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGK 142
             M+GK
Sbjct:    67 MNGK 70


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GLSF T+E SL   F  +GQ+ EV +V D+   R RGF F+ +   ++++ A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   139 MHGK 142
             M+GK
Sbjct:    67 MNGK 70


>UNIPROTKB|I3LH22 [details] [associations]
            symbol:LOC100514264 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU915617
            Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
        Length = 161

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/81 (34%), Positives = 45/81 (55%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV GL+F + + +L +    F  + EV +V D+   R RGF F+ +   E +   +  
Sbjct:     7 KLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRA 66

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
             M+G+ LDGR I V+ A   A+
Sbjct:    67 MNGESLDGRQIHVDHAGKSAQ 87


>UNIPROTKB|Q83D11 [details] [associations]
            symbol:CBU_0935 "RNA binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/86 (34%), Positives = 50/86 (58%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +++V  L +   E+ L   F  FG +  V +V +    R +G+AF+ Y T +++ +A++ 
Sbjct:    45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA 104

Query:   139 MHGKFLDGRVIFVEIAKSRAELRQAF 164
              HGK L GR + V IAKSR E + A+
Sbjct:   105 -HGKDLQGRSLVVRIAKSR-EQQHAY 128


>TIGR_CMR|CBU_0935 [details] [associations]
            symbol:CBU_0935 "RNA-binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/86 (34%), Positives = 50/86 (58%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +++V  L +   E+ L   F  FG +  V +V +    R +G+AF+ Y T +++ +A++ 
Sbjct:    45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA 104

Query:   139 MHGKFLDGRVIFVEIAKSRAELRQAF 164
              HGK L GR + V IAKSR E + A+
Sbjct:   105 -HGKDLQGRSLVVRIAKSR-EQQHAY 128


>UNIPROTKB|F1PQV8 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
            GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
            EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
            Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
            Uniprot:F1PQV8
        Length = 382

 Score = 144 (55.7 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 29/92 (31%), Positives = 54/92 (58%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T +FV        ++ L+  F G+G    V ++ D  + + +GF F+RY T E +++A+ 
Sbjct:   199 TNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257

Query:   138 GMHGKFLDGRVIFVEIAKSR----AELRQAFK 165
              +HGK ++G+V++V  A+ +    AELR+ F+
Sbjct:   258 DLHGKSINGKVLYVGRAQKKIERLAELRRRFE 289


>UNIPROTKB|D4A6A2 [details] [associations]
            symbol:D4A6A2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
            ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
        Length = 232

 Score = 138 (53.6 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 32/81 (39%), Positives = 46/81 (56%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T++DSLR  FQ +G L +  ++ D    R RGF F+ Y+ EE        
Sbjct:    14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCAR 73

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
              H   +DGRV+  + A SR +
Sbjct:    74 PHK--VDGRVVEPKRAVSRED 92


>FB|FBgn0010263 [details] [associations]
            symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
            "germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
            "nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
            evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
            HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
            ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
            InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
        Length = 444

 Score = 145 (56.1 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             PKT L V+ L    S+D +R+ F  FG++    L+ DK+  +  G+ F+ Y  +E++ +A
Sbjct:   108 PKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKA 167

Query:   136 IEGMHGKFLDGRVIFVEIAKSRAE 159
             I  ++G  L  + I V IA+  +E
Sbjct:   168 INALNGLRLQNKTIKVSIARPSSE 191


>UNIPROTKB|F1LYN9 [details] [associations]
            symbol:F1LYN9 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
            Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
        Length = 263

 Score = 140 (54.3 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 32/81 (39%), Positives = 49/81 (60%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T++ SLR+ F+ +  L +  L+ D  + R RGF  + YAT EE   A+  
Sbjct:     1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  ++A SR +
Sbjct:    61 RPHK-VDGRVVEPKVAVSRED 80


>CGD|CAL0005232 [details] [associations]
            symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
            eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
            ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
            GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
            Uniprot:Q5AB84
        Length = 400

 Score = 144 (55.7 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 26/98 (26%), Positives = 53/98 (54%)

Query:    72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEE 131
             S   P   LF+  LSF  + D+L N F  +G ++   +       +P+GF ++++++ +E
Sbjct:   264 SQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDE 323

Query:   132 SRRAIEGMHGKFLDGRVIFVEIAKSRAELRQAFKNNPR 169
             ++ A+E M+G++++GR   ++ +  R        NN R
Sbjct:   324 AKAALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNNRR 361

 Score = 129 (50.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 28/103 (27%), Positives = 58/103 (56%)

Query:    67 SPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRY 126
             S  + ST +P T LFV  LS+   +  L+  F+  G ++   ++M++   + RG+ ++ +
Sbjct:   158 SKPAASTEEPAT-LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDF 216

Query:   127 ATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQAFKNNPR 169
              ++  + +A+E M GK +DGR I ++++  +    ++  NN R
Sbjct:   217 ESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKS--NNDR 257


>UNIPROTKB|Q5AB84 [details] [associations]
            symbol:NSR1 "Potential nuclear localization sequence
            binding protein Nsr1p" species:237561 "Candida albicans SC5314"
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
            EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
            RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
            STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
            KEGG:cal:CaO19.6090 Uniprot:Q5AB84
        Length = 400

 Score = 144 (55.7 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 26/98 (26%), Positives = 53/98 (54%)

Query:    72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEE 131
             S   P   LF+  LSF  + D+L N F  +G ++   +       +P+GF ++++++ +E
Sbjct:   264 SQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDE 323

Query:   132 SRRAIEGMHGKFLDGRVIFVEIAKSRAELRQAFKNNPR 169
             ++ A+E M+G++++GR   ++ +  R        NN R
Sbjct:   324 AKAALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNNRR 361

 Score = 129 (50.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 28/103 (27%), Positives = 58/103 (56%)

Query:    67 SPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRY 126
             S  + ST +P T LFV  LS+   +  L+  F+  G ++   ++M++   + RG+ ++ +
Sbjct:   158 SKPAASTEEPAT-LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDF 216

Query:   127 ATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQAFKNNPR 169
              ++  + +A+E M GK +DGR I ++++  +    ++  NN R
Sbjct:   217 ESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKS--NNDR 257


>UNIPROTKB|Q28521 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
            EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
            ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
            GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
            Uniprot:Q28521
        Length = 320

 Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 32/81 (39%), Positives = 50/81 (61%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+++SLR+ F+ +G L +  ++ D    R RGF F+ YAT E+   A+  
Sbjct:    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 74

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    75 RPHK-VDGRVVEPKRAVSRED 94


>UNIPROTKB|K7GQ39 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
        Length = 101

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 28/83 (33%), Positives = 50/83 (60%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:    11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70

Query:   139 MHGKFLDGRVIFVEIAKSRAELR 161
             M+GK +     F++  K R+  R
Sbjct:    71 MNGKGVPSSTRFLQQFKPRSTKR 93


>UNIPROTKB|H0Y8G5 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
        Length = 261

 Score = 139 (54.0 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:   102 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 161

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   162 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 200

 Score = 126 (49.4 bits), Expect = 8.9e-08, P = 8.9e-08
 Identities = 32/93 (34%), Positives = 55/93 (59%)

Query:    67 SP-HS-LSTCQPKT-RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAF 123
             SP HS  +T Q +  ++F+ GLS+ T++  L++ F  FG++V+  L +D I  R RGF F
Sbjct:    16 SPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 75

Query:   124 LRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156
             + +   E   + ++    K L+G+VI  + AK+
Sbjct:    76 VLFKESESVDKVMDQKEHK-LNGKVIDPKRAKA 107


>FB|FBgn0016978 [details] [associations]
            symbol:snRNP-U1-70K "small ribonucleoprotein particle U1
            subunit 70K" species:7227 "Drosophila melanogaster" [GO:0005692
            "U11 snRNP" evidence=ISS] [GO:0030532 "small nuclear
            ribonucleoprotein complex" evidence=ISS] [GO:0030619 "U1 snRNA
            binding" evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS;IDA]
            [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IPI]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0005515
            "protein binding" evidence=IPI] [GO:0007052 "mitotic spindle
            organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
            evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0007052 EMBL:AE014134 GO:GO:0022008
            GO:GO:0000166 GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0000381 GO:GO:0005685 KO:K11093 OMA:KKSRGYL
            InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
            EMBL:M31162 EMBL:AY061501 EMBL:AY089622 PIR:A36311
            RefSeq:NP_477205.1 UniGene:Dm.4728 PDB:2BN5 PDBsum:2BN5
            ProteinModelPortal:P17133 SMR:P17133 DIP:DIP-19840N
            MINT:MINT-1583111 STRING:P17133 PaxDb:P17133 PRIDE:P17133
            EnsemblMetazoa:FBtr0079355 EnsemblMetazoa:FBtr0331374
            EnsemblMetazoa:FBtr0331375 GeneID:33982 KEGG:dme:Dmel_CG8749
            CTD:33982 FlyBase:FBgn0016978 InParanoid:P17133 OrthoDB:EOG466T39
            PhylomeDB:P17133 EvolutionaryTrace:P17133 GenomeRNAi:33982
            NextBio:786261 Bgee:P17133 GermOnline:CG8749 Uniprot:P17133
        Length = 448

 Score = 144 (55.7 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 27/97 (27%), Positives = 56/97 (57%)

Query:    61 LACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRG 120
             +A   P+    +T  P   LF++ +++ TSE  LR  F+ +G + ++ L+ D+ + +P+G
Sbjct:    85 IALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKG 144

Query:   121 FAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
             +AF+ Y  E +   A +   GK +D + + V++ ++R
Sbjct:   145 YAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERAR 181


>UNIPROTKB|F1P5I0 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
        Length = 288

 Score = 140 (54.3 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T++DSLR  F+ +G L +  ++ D    R RGF F+ Y+  EE   A+  
Sbjct:    10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    70 RPHK-VDGRVVEPKRAVSRED 89


>UNIPROTKB|Q98SP8 [details] [associations]
            symbol:epabp-a "Embryonic polyadenylate-binding protein A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
            embryonic development" evidence=IEP] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
            HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
            RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
            SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
            Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
        Length = 629

 Score = 146 (56.5 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 30/93 (32%), Positives = 50/93 (53%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T +++        +  LR  F  FG  + V ++MD  + R RGF F+ Y   EE+++A+ 
Sbjct:   191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVS 249

Query:   138 GMHGKFLDGRVIFVEIAKSRAELRQAFKNNPRQ 170
              M+GK ++GR+I+V  A+ R E +   K    Q
Sbjct:   250 EMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQ 282

 Score = 118 (46.6 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 26/80 (32%), Positives = 43/80 (53%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             +F+  L       +L + F  FG ++   +V D+  +R  G+ F+ + T E + RAI+ M
Sbjct:   101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETHEAANRAIQTM 158

Query:   140 HGKFLDGRVIFVEIAKSRAE 159
             +G  L+ R +FV   KSR E
Sbjct:   159 NGMLLNDRKVFVGHFKSRRE 178


>UNIPROTKB|Q5ZI72 [details] [associations]
            symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
            D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
            GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
            GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
            RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
            ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
            Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
            GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
            Uniprot:Q5ZI72
        Length = 301

 Score = 140 (54.3 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 30/98 (30%), Positives = 52/98 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    +L   +P  ++FV GLS  TSE+ ++  F  FG++  + L MD   N  RGF F+
Sbjct:   102 PKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 161

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQ 162
              Y  EE  ++ +E  + +   G+   +++A+ +   RQ
Sbjct:   162 TYTDEEPVKKLLESRYHQIGSGKCE-IKVAQPKEVYRQ 198

 Score = 109 (43.4 bits), Expect = 0.00022, P = 0.00022
 Identities = 25/82 (30%), Positives = 43/82 (52%)

Query:    75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRR 134
             Q   ++F+ GLS+ TS+  L      FG++V+  +  D +  R RGF F+ +       +
Sbjct:    27 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 86

Query:   135 AIEGMHGKFLDGRVIFVEIAKS 156
              +E    K LDG++I  + AK+
Sbjct:    87 VLELKEHK-LDGKLIDPKRAKA 107


>MGI|MGI:1355299 [details] [associations]
            symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
            D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
            "double-stranded DNA binding" evidence=ISO] [GO:0003697
            "single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
            RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
            expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
            evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
            GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
            EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
            IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
            SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
            PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
            CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
        Length = 301

 Score = 140 (54.3 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 30/98 (30%), Positives = 52/98 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    +L   +P  ++FV GLS  TSE+ ++  F  FG++  + L MD   N  RGF F+
Sbjct:   101 PKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 160

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQ 162
              Y  EE  ++ +E  + +   G+   +++A+ +   RQ
Sbjct:   161 TYTDEEPVKKLLESRYHQIGSGKCE-IKVAQPKEVYRQ 197

 Score = 107 (42.7 bits), Expect = 0.00039, P = 0.00039
 Identities = 25/82 (30%), Positives = 43/82 (52%)

Query:    75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRR 134
             Q   ++F+ GLS+ TS+  L      FG++V+  +  D +  R RGF F+ +       +
Sbjct:    26 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 85

Query:   135 AIEGMHGKFLDGRVIFVEIAKS 156
              +E    K LDG++I  + AK+
Sbjct:    86 VLELKEHK-LDGKLIDPKRAKA 106


>TAIR|locus:2202740 [details] [associations]
            symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
            EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
            PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
            ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
            EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
            TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
            ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
            Uniprot:Q9ZUJ3
        Length = 258

 Score = 138 (53.6 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 32/94 (34%), Positives = 52/94 (55%)

Query:    66 PSPHSLSTCQPKT--RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAF 123
             P P+      P+T  +LFV  LS+  + +SL  AF+  G +V   +V D    R RG+ F
Sbjct:   164 PKPNK-EPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGF 222

Query:   124 LRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
             + Y+++ E   A+E + G  L+GR I V +A+ +
Sbjct:   223 VCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256


>CGD|CAL0004726 [details] [associations]
            symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
            "poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
            stability" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
            RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
            GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
        Length = 510

 Score = 144 (55.7 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 32/109 (29%), Positives = 60/109 (55%)

Query:    59 FPLACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRP 118
             F  A +  +P++  T +P   +FV  LS   +++ LRNAF  F  L + +++ D   +R 
Sbjct:   156 FQSAAIAGNPNN--TEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRS 213

Query:   119 RGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQAFKNN 167
             RG+ F+ +  + ++  A++ M+G++L GR I    A  + + +Q   NN
Sbjct:   214 RGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQQQQQHYNN 262


>UNIPROTKB|F1NBB6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
        Length = 310

 Score = 140 (54.3 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T++DSLR  F+ +G L +  ++ D    R RGF F+ Y+  EE   A+  
Sbjct:    22 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 81

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    82 RPHK-VDGRVVEPKRAVSRED 101


>UNIPROTKB|Q9DDU8 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
            EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
            UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
            GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
            Uniprot:Q9DDU8
        Length = 289

 Score = 139 (54.0 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 31/79 (39%), Positives = 47/79 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P   L V GLS  T+E  LR  F  +G + +V++V D+ + R RGFAF+ +   E+++ A
Sbjct:   116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEA 175

Query:   136 IEGMHGKFLDGRVIFVEIA 154
              E  +G  LDGR I V+ +
Sbjct:   176 KERANGMELDGRRIRVDFS 194


>UNIPROTKB|F1PGQ0 [details] [associations]
            symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
            Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
        Length = 318

 Score = 140 (54.3 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 35/93 (37%), Positives = 51/93 (54%)

Query:    67 SPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRY 126
             SP S    +   +LF+ GLSF T+E+SLR+ F+ +G   +  ++ D    R RG  FL Y
Sbjct:     3 SPKSPKEPEQLWKLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMY 62

Query:   127 ATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAE 159
             AT EE   A+       +DGRV+  + A SR +
Sbjct:    63 ATVEEVDAAMNAR--PHVDGRVVEPKRAVSRED 93


>UNIPROTKB|F1RKX4 [details] [associations]
            symbol:RBFOX1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008022 "protein C-terminus binding" evidence=IEA]
            [GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005802 GeneTree:ENSGT00390000013767
            EMBL:CU464000 EMBL:CU694874 Ensembl:ENSSSCT00000008677 OMA:PPENTEN
            Uniprot:F1RKX4
        Length = 234

 Score = 136 (52.9 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query:    66 PSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLR 125
             PS ++ +  QPK RL VS + FR  +  LR  F  FG++++V ++ ++  ++  GF F+ 
Sbjct:   110 PSENTENKSQPK-RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK--GFGFVT 166

Query:   126 YATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
             +    ++ RA E +HG  ++GR I V  A +R
Sbjct:   167 FENSADADRAREKLHGTVVEGRKIEVNNATAR 198


>TAIR|locus:2036520 [details] [associations]
            symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
            "RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
            "response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
            GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
            EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
            RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
            UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
            PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
            EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
            TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
            ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
        Length = 292

 Score = 139 (54.0 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 27/81 (33%), Positives = 48/81 (59%)

Query:    77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136
             ++R+FV GLS+  +E  L + F  +G++ E  +++ +   RPRGF F+ +     +  AI
Sbjct:    11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query:   137 EGMHGKFLDGRVIFVEIAKSR 157
             + MHG+ L  +VI V  A+ +
Sbjct:    71 KHMHGRELGNKVISVNKAEPK 91


>RGD|1309950 [details] [associations]
            symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
            EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
            UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
            PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
            NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
        Length = 322

 Score = 140 (54.3 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 30/98 (30%), Positives = 52/98 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    +L   +P  ++FV GLS  TSE+ ++  F  FG++  + L MD   N  RGF F+
Sbjct:   123 PKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 182

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQ 162
              Y  EE  ++ +E  + +   G+   +++A+ +   RQ
Sbjct:   183 TYTDEEPVKKLLESRYHQIGSGKCE-IKVAQPKEVYRQ 219

 Score = 115 (45.5 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 31/95 (32%), Positives = 48/95 (50%)

Query:    62 ACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGF 121
             AC P  P S  T   K  +F+ GLS+ TS+  L      FG++V+  +  D +  R RGF
Sbjct:    38 AC-PLDPSSFPTSGNK--MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGF 94

Query:   122 AFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156
              F+ +       + +E    K LDG++I  + AK+
Sbjct:    95 GFVLFKDAASVDKVLELKEHK-LDGKLIDPKRAKA 128


>UNIPROTKB|Q3SWU3 [details] [associations]
            symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
            D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
            EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
            UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
            PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
            NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
        Length = 322

 Score = 140 (54.3 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 30/98 (30%), Positives = 52/98 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    +L   +P  ++FV GLS  TSE+ ++  F  FG++  + L MD   N  RGF F+
Sbjct:   123 PKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 182

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQ 162
              Y  EE  ++ +E  + +   G+   +++A+ +   RQ
Sbjct:   183 TYTDEEPVKKLLESRYHQIGSGKCE-IKVAQPKEVYRQ 219

 Score = 115 (45.5 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 31/95 (32%), Positives = 48/95 (50%)

Query:    62 ACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGF 121
             AC P  P S  T   K  +F+ GLS+ TS+  L      FG++V+  +  D +  R RGF
Sbjct:    38 AC-PLDPSSFPTSGNK--MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGF 94

Query:   122 AFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156
              F+ +       + +E    K LDG++I  + AK+
Sbjct:    95 GFVLFKDAASVDKVLELKEHK-LDGKLIDPKRAKA 128


>UNIPROTKB|B4DTC3 [details] [associations]
            symbol:HNRNPD "cDNA FLJ54150, highly similar to
            Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
            UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
            Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
            Ensembl:ENST00000543098 Uniprot:B4DTC3
        Length = 303

 Score = 139 (54.0 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:   117 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 176

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   177 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 215

 Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 26/78 (33%), Positives = 47/78 (60%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             ++F+ GLS+ T++  L++ F  FG++V+  L +D I  R RGF F+ +   E   + ++ 
Sbjct:    46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105

Query:   139 MHGKFLDGRVIFVEIAKS 156
                K L+G+VI  + AK+
Sbjct:   106 KEHK-LNGKVIDPKRAKA 122


>UNIPROTKB|G3V6A4 [details] [associations]
            symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
            InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
            UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
            NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
            Uniprot:G3V6A4
        Length = 304

 Score = 139 (54.0 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:   167 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 226

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   227 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 265

 Score = 121 (47.7 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 31/93 (33%), Positives = 54/93 (58%)

Query:    67 SP-HS-LSTCQPKT-RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAF 123
             SP H+  +T Q +  ++F+ GLS+ T++  L++ F  FG +V+  L +D I  R RGF F
Sbjct:    81 SPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGF 140

Query:   124 LRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156
             + +   E   + ++    K L+G+VI  + AK+
Sbjct:   141 VLFKESESVDKVMDQKEHK-LNGKVIDPKRAKA 172


>UNIPROTKB|F1NCV5 [details] [associations]
            symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
            D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
            EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
            Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
        Length = 338

 Score = 140 (54.3 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 30/98 (30%), Positives = 52/98 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    +L   +P  ++FV GLS  TSE+ ++  F  FG++  + L MD   N  RGF F+
Sbjct:   138 PKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 197

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQ 162
              Y  EE  ++ +E  + +   G+   +++A+ +   RQ
Sbjct:   198 TYTDEEPVKKLLESRYHQIGSGKCE-IKVAQPKEVYRQ 234

 Score = 109 (43.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 25/82 (30%), Positives = 43/82 (52%)

Query:    75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRR 134
             Q   ++F+ GLS+ TS+  L      FG++V+  +  D +  R RGF F+ +       +
Sbjct:    63 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 122

Query:   135 AIEGMHGKFLDGRVIFVEIAKS 156
              +E    K LDG++I  + AK+
Sbjct:   123 VLELKEHK-LDGKLIDPKRAKA 143


>UNIPROTKB|A5D9H5 [details] [associations]
            symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
            species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
            Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
            RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
            Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
            NextBio:20874604 Uniprot:A5D9H5
        Length = 306

 Score = 139 (54.0 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:   169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 228

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   229 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 267

 Score = 126 (49.4 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 32/93 (34%), Positives = 55/93 (59%)

Query:    67 SP-HS-LSTCQPKT-RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAF 123
             SP HS  +T Q +  ++F+ GLS+ T++  L++ F  FG++V+  L +D I  R RGF F
Sbjct:    83 SPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 142

Query:   124 LRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156
             + +   E   + ++    K L+G+VI  + AK+
Sbjct:   143 VLFKESESVDKVMDQKEHK-LNGKVIDPKRAKA 174


>UNIPROTKB|I3LBN9 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
            Uniprot:I3LBN9
        Length = 280

 Score = 138 (53.6 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 30/79 (37%), Positives = 47/79 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P   L V GLS  T+E  LR  F  +G + +V++V D+ + R RGFAF+ +   ++++ A
Sbjct:   108 PNCCLGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 167

Query:   136 IEGMHGKFLDGRVIFVEIA 154
              E  +G  LDGR I V+ +
Sbjct:   168 KERANGMELDGRRIRVDFS 186


>ZFIN|ZDB-GENE-060224-1 [details] [associations]
            symbol:hnrnpa3 "heterogeneous nuclear
            ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
            UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
            Uniprot:B0V1I7
        Length = 312

 Score = 139 (54.0 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 32/81 (39%), Positives = 49/81 (60%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T+EDSLR  F+ +G+L +  ++ D    R RGF F+ Y++  E   A+  
Sbjct:    14 KLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTA 73

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    74 RPHK-VDGRVVEPKRAVSRED 93


>MGI|MGI:1921361 [details] [associations]
            symbol:Rbm19 "RNA binding motif protein 19" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
            development" evidence=IEA] [GO:0040019 "positive regulation of
            embryonic development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
            GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
            HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
            CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
            EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
            IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
            PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
            PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
            STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
            Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
            UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
            NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
            Uniprot:Q8R3C6
        Length = 952

 Score = 133 (51.9 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             RLFV  LS+ +SE+ L   F  +G L E++  +D +  +P+GFAF+ +   E + +A   
Sbjct:   401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 460

Query:   139 MHGKFLDGRVIFVEIAKSRAELRQ 162
             + G+   GR++ V  +  + E  Q
Sbjct:   461 VDGQVFQGRMLHVLPSTIKKEASQ 484

 Score = 38 (18.4 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query:    32 PATPFTIKRR 41
             P TP+T+K R
Sbjct:   289 PTTPYTVKLR 298


>FB|FBgn0024987 [details] [associations]
            symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0042742 "defense response to bacterium"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
            GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
            SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
            UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
            InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
        Length = 485

 Score = 142 (55.0 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 30/88 (34%), Positives = 52/88 (59%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T L+V  LS   ++D L   F  +G +V+ N++ DK+  RPRG AF+RY   EE++ AI+
Sbjct:   179 TNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIK 238

Query:   138 GMHGKFLDG--RVIFVEIAKSRAELRQA 163
              ++    +G  + I+V +A+   + + A
Sbjct:   239 ALNNTVPEGGSQPIWVRLAEEHGKAKAA 266


>UNIPROTKB|G3V6A5 [details] [associations]
            symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
            isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
            KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
            Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
        Length = 334

 Score = 139 (54.0 bits), Expect = 6.0e-09, P = 6.0e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:   148 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 207

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   208 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 246

 Score = 120 (47.3 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 26/78 (33%), Positives = 46/78 (58%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             ++F+ GLS+ T++  L++ F  FG +V+  L +D I  R RGF F+ +   E   + ++ 
Sbjct:    77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136

Query:   139 MHGKFLDGRVIFVEIAKS 156
                K L+G+VI  + AK+
Sbjct:   137 KEHK-LNGKVIDPKRAKA 153


>POMBASE|SPBP22H7.02c [details] [associations]
            symbol:SPBP22H7.02c "RNA-binding protein Mrd1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] [GO:0030686 "90S preribosome"
            evidence=ISO] [GO:0034462 "small-subunit processome assembly"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
            GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
            GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
            GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
            HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
            RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
            PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
            KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
        Length = 833

 Score = 145 (56.1 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 29/82 (35%), Positives = 52/82 (63%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             RLF+  L++  +ED L++ F  FGQL +V++ +DK  N P+GFA++ +   +++ RA   
Sbjct:   324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383

Query:   139 MHGKFLDGRVIFVEIAKSRAEL 160
             +  K   GR++ V  AK+R+ +
Sbjct:   384 LDAKPFQGRLLHVLPAKARSSI 405


>UNIPROTKB|E1BZE6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00812068 ProteinModelPortal:E1BZE6
            Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
        Length = 380

 Score = 140 (54.3 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GLSF T++DSLR  F+ +G L +  ++ D    R RGF F+ Y+  EE   A+  
Sbjct:    34 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 93

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    94 RPHK-VDGRVVEPKRAVSRED 113


>UNIPROTKB|Q96DU9 [details] [associations]
            symbol:PABPC5 "Polyadenylate-binding protein 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
            EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
            PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
            ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
            PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
            DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
            UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
            HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
            PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
            GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
            CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
            Uniprot:Q96DU9
        Length = 382

 Score = 140 (54.3 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 29/92 (31%), Positives = 54/92 (58%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T +FV  +     ++ L+  F  +G    V ++ D  + + +GF F+RY T E +++A+ 
Sbjct:   199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257

Query:   138 GMHGKFLDGRVIFVEIAKSR----AELRQAFK 165
              +HGK +DG+V++V  A+ +    AELR+ F+
Sbjct:   258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFE 289


>FB|FBgn0031883 [details] [associations]
            symbol:CG11266 species:7227 "Drosophila melanogaster"
            [GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
            GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
            TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
            GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
            KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
            GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
            RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
            STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
            UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
        Length = 594

 Score = 143 (55.4 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 30/91 (32%), Positives = 53/91 (58%)

Query:    75 QPKT-----RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATE 129
             QPK+     RL+V  L F  +ED LR  F+ FG++  + L+MD    R +G+ F+ Y   
Sbjct:   327 QPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNA 386

Query:   130 EESRRAIEGMHGKFLDGRVIFVEIAKSRAEL 160
             +++++A+E ++G  L GR++ V     R ++
Sbjct:   387 DDAKKALEQLNGFELAGRLMKVGNVTERLDM 417


>UNIPROTKB|F8VR27 [details] [associations]
            symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
            EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
            EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
            EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
            IPI:IPI01023064 ProteinModelPortal:F8VR27 SMR:F8VR27
            Ensembl:ENST00000547605 UCSC:uc002cyr.1 ArrayExpress:F8VR27
            Bgee:F8VR27 Uniprot:F8VR27
        Length = 262

 Score = 136 (52.9 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query:    66 PSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLR 125
             PS ++ +  QPK RL VS + FR  +  LR  F  FG++++V ++ ++  ++  GF F+ 
Sbjct:   105 PSENTENKSQPK-RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK--GFGFVT 161

Query:   126 YATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
             +    ++ RA E +HG  ++GR I V  A +R
Sbjct:   162 FENSADADRAREKLHGTVVEGRKIEVNNATAR 193


>UNIPROTKB|F8VZY7 [details] [associations]
            symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
            EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
            EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
            EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
            IPI:IPI01022282 ProteinModelPortal:F8VZY7 SMR:F8VZY7
            Ensembl:ENST00000551752 ArrayExpress:F8VZY7 Bgee:F8VZY7
            Uniprot:F8VZY7
        Length = 263

 Score = 136 (52.9 bits), Expect = 6.7e-09, P = 6.7e-09
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query:    66 PSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLR 125
             PS ++ +  QPK RL VS + FR  +  LR  F  FG++++V ++ ++  ++  GF F+ 
Sbjct:   106 PSENTENKSQPK-RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK--GFGFVT 162

Query:   126 YATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
             +    ++ RA E +HG  ++GR I V  A +R
Sbjct:   163 FENSADADRAREKLHGTVVEGRKIEVNNATAR 194


>UNIPROTKB|E2RIB8 [details] [associations]
            symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
            EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
            ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
            KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
        Length = 751

 Score = 144 (55.7 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 33/100 (33%), Positives = 56/100 (56%)

Query:    66 PSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLR 125
             P P        K RL +  LSF+ SED L+  F  +G ++EVN+   K   + RGFAF++
Sbjct:   102 PKPKKPKVADKKARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPR-KPDGKMRGFAFVQ 160

Query:   126 YATEEESRRAIEGMHGKFLDGRVIFVE--IAKSRAELRQA 163
             +    E+ +A++ M+ K + GR + V+  +AK + +  Q+
Sbjct:   161 FKNLLEAGKALKSMNMKEIKGRTVAVDWAVAKDKYKNTQS 200

 Score = 109 (43.4 bits), Expect = 0.00086, P = 0.00086
 Identities = 29/89 (32%), Positives = 47/89 (52%)

Query:    77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136
             KT +F+  LSF + E+ L    Q FG L  V +V+       +G AF ++ T+E +++ +
Sbjct:   327 KT-VFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCL 385

Query:   137 EGMH------GKFLDGRVIFVEIAKSRAE 159
             E         G  LDGR + V++A +R E
Sbjct:   386 EAASPETEGGGLKLDGRQLRVDLAVTRDE 414


>UNIPROTKB|Q6DEY7 [details] [associations]
            symbol:epabp "Embryonic polyadenylate-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
            evidence=ISS] [GO:0043009 "chordate embryonic development"
            evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
            eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
            ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
            GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
            HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
            Uniprot:Q6DEY7
        Length = 629

 Score = 143 (55.4 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 30/93 (32%), Positives = 49/93 (52%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T +++        +  LR  F  FG  + V ++MD    R RGF F+ Y   EE+++A+ 
Sbjct:   191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVS 249

Query:   138 GMHGKFLDGRVIFVEIAKSRAELRQAFKNNPRQ 170
              M+GK ++GR+I+V  A+ R E +   K    Q
Sbjct:   250 EMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQ 282

 Score = 120 (47.3 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 26/80 (32%), Positives = 44/80 (55%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             +F+  L       +L + F  FG ++   +V D+  +R  G+ F+ + T+E + RAI+ M
Sbjct:   101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTM 158

Query:   140 HGKFLDGRVIFVEIAKSRAE 159
             +G  L+ R +FV   KSR E
Sbjct:   159 NGMLLNDRKVFVGHFKSRRE 178


>RGD|620365 [details] [associations]
            symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
            process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
            evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
            evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
            evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
            GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
            OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
            Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
            EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
            IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
            RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
            ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
            PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
            UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
            ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
            Uniprot:Q9JJ54
        Length = 353

 Score = 139 (54.0 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:   167 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 226

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   227 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 265

 Score = 121 (47.7 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 31/93 (33%), Positives = 54/93 (58%)

Query:    67 SP-HS-LSTCQPKT-RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAF 123
             SP H+  +T Q +  ++F+ GLS+ T++  L++ F  FG +V+  L +D I  R RGF F
Sbjct:    81 SPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGF 140

Query:   124 LRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156
             + +   E   + ++    K L+G+VI  + AK+
Sbjct:   141 VLFKESESVDKVMDQKEHK-LNGKVIDPKRAKA 172


>UNIPROTKB|Q9JJ54 [details] [associations]
            symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
            GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
            EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
            IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
            RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
            RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
            SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
            GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
            InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
            Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
        Length = 353

 Score = 139 (54.0 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:   167 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 226

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   227 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 265

 Score = 121 (47.7 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 31/93 (33%), Positives = 54/93 (58%)

Query:    67 SP-HS-LSTCQPKT-RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAF 123
             SP H+  +T Q +  ++F+ GLS+ T++  L++ F  FG +V+  L +D I  R RGF F
Sbjct:    81 SPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGF 140

Query:   124 LRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156
             + +   E   + ++    K L+G+VI  + AK+
Sbjct:   141 VLFKESESVDKVMDQKEHK-LNGKVIDPKRAKA 172


>UNIPROTKB|A6H6Y0 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
            OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
            UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
            STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
            Uniprot:A6H6Y0
        Length = 355

 Score = 139 (54.0 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:   169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 228

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   229 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 267

 Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 32/93 (34%), Positives = 55/93 (59%)

Query:    67 SP-HS-LSTCQPKT-RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAF 123
             SP HS  +T Q +  ++F+ GLS+ T++  L++ F  FG++V+  L +D I  R RGF F
Sbjct:    83 SPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 142

Query:   124 LRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156
             + +   E   + ++    K L+G+VI  + AK+
Sbjct:   143 VLFKESESVDKVMDQKEHK-LNGKVIDPKRAKA 174


>UNIPROTKB|E2RIX2 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
            InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
            RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
            KEGG:cfa:478450 Uniprot:E2RIX2
        Length = 355

 Score = 139 (54.0 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:   169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 228

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   229 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 267

 Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 32/93 (34%), Positives = 55/93 (59%)

Query:    67 SP-HS-LSTCQPKT-RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAF 123
             SP HS  +T Q +  ++F+ GLS+ T++  L++ F  FG++V+  L +D I  R RGF F
Sbjct:    83 SPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 142

Query:   124 LRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156
             + +   E   + ++    K L+G+VI  + AK+
Sbjct:   143 VLFKESESVDKVMDQKEHK-LNGKVIDPKRAKA 174


>UNIPROTKB|Q14103 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
            "RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
            evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
            "cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
            Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
            GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
            Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
            GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
            GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
            KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
            EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
            EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
            IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
            PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
            RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
            PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
            PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
            ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
            MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
            SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
            Ensembl:ENST00000313899 Ensembl:ENST00000352301
            Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
            UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
            GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
            neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
            PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
            GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
            Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
            InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
        Length = 355

 Score = 139 (54.0 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:   169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 228

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   229 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 267

 Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 32/93 (34%), Positives = 55/93 (59%)

Query:    67 SP-HS-LSTCQPKT-RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAF 123
             SP HS  +T Q +  ++F+ GLS+ T++  L++ F  FG++V+  L +D I  R RGF F
Sbjct:    83 SPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 142

Query:   124 LRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156
             + +   E   + ++    K L+G+VI  + AK+
Sbjct:   143 VLFKESESVDKVMDQKEHK-LNGKVIDPKRAKA 174


>MGI|MGI:101947 [details] [associations]
            symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
            "telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
            mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
            GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
            GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
            OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
            InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
            EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
            IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
            RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
            RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
            SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
            PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
            Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
            KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
            NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
            GermOnline:ENSMUSG00000000568 Uniprot:Q60668
        Length = 355

 Score = 139 (54.0 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    ++ T +P  ++FV GLS  T E+ +R  F GFG++  + L MD   N+ RGF F+
Sbjct:   169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 228

Query:   125 RYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSRAELRQ 162
              +  EE  ++ +E   H   L    I V ++K + + +Q
Sbjct:   229 TFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQ 267

 Score = 122 (48.0 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 26/78 (33%), Positives = 47/78 (60%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             ++F+ GLS+ T++  L++ F  FG++V+  L +D I  R RGF F+ +   E   + ++ 
Sbjct:    98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query:   139 MHGKFLDGRVIFVEIAKS 156
                K L+G+VI  + AK+
Sbjct:   158 KEHK-LNGKVIDPKRAKA 174


>TAIR|locus:2049721 [details] [associations]
            symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
            "response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
            evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
            "response to abscisic acid stimulus" evidence=IEP] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
            GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
            EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
            RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
            SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
            PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
            GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
            InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
            ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
            Uniprot:Q9ZUU4
        Length = 289

 Score = 137 (53.3 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 29/84 (34%), Positives = 50/84 (59%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             R++V  LS+   + +L + F   G++VE  ++ D+ + R +GF F+ Y + +E + AI+ 
Sbjct:   205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264

Query:   139 MHGKFLDGRVIFVEIAKSRAELRQ 162
             + G  LDGR I V  A++R   RQ
Sbjct:   265 LDGADLDGRQIRVSEAEARPPRRQ 288

 Score = 129 (50.5 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 32/107 (29%), Positives = 45/107 (42%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             PP   S S      +LFV  L F      L   F+  G +  V ++ DKI  R RGF F+
Sbjct:    81 PPKEQSFSA---DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQAFKNNPRQN 171
               ++  E   A +  +G  LDGR + V       +    F   PR +
Sbjct:   138 TMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSS 184


>UNIPROTKB|F1N2T0 [details] [associations]
            symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
            OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
            PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
            Uniprot:F1N2T0
        Length = 420

 Score = 140 (54.3 bits), Expect = 7.4e-09, P = 7.4e-09
 Identities = 30/98 (30%), Positives = 52/98 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    +L   +P  ++FV GLS  TSE+ ++  F  FG++  + L MD   N  RGF F+
Sbjct:   220 PKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 279

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQ 162
              Y  EE  ++ +E  + +   G+   +++A+ +   RQ
Sbjct:   280 TYTDEEPVKKLLESRYHQIGSGKCE-IKVAQPKEVYRQ 316

 Score = 107 (42.7 bits), Expect = 0.00070, P = 0.00069
 Identities = 25/82 (30%), Positives = 43/82 (52%)

Query:    75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRR 134
             Q   ++F+ GLS+ TS+  L      FG++V+  +  D +  R RGF F+ +       +
Sbjct:   145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204

Query:   135 AIEGMHGKFLDGRVIFVEIAKS 156
              +E    K LDG++I  + AK+
Sbjct:   205 VLELKEHK-LDGKLIDPKRAKA 225


>UNIPROTKB|E2QRT0 [details] [associations]
            symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
            GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
            EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
            GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
        Length = 420

 Score = 140 (54.3 bits), Expect = 7.4e-09, P = 7.4e-09
 Identities = 30/98 (30%), Positives = 52/98 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    +L   +P  ++FV GLS  TSE+ ++  F  FG++  + L MD   N  RGF F+
Sbjct:   220 PKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 279

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQ 162
              Y  EE  ++ +E  + +   G+   +++A+ +   RQ
Sbjct:   280 TYTDEEPVKKLLESRYHQIGSGKCE-IKVAQPKEVYRQ 316

 Score = 107 (42.7 bits), Expect = 0.00070, P = 0.00069
 Identities = 25/82 (30%), Positives = 43/82 (52%)

Query:    75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRR 134
             Q   ++F+ GLS+ TS+  L      FG++V+  +  D +  R RGF F+ +       +
Sbjct:   145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204

Query:   135 AIEGMHGKFLDGRVIFVEIAKS 156
              +E    K LDG++I  + AK+
Sbjct:   205 VLELKEHK-LDGKLIDPKRAKA 225


>UNIPROTKB|O14979 [details] [associations]
            symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
            D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
            RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
            evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
            [GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
            of gene expression" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
            GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
            GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
            KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
            EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
            EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
            IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
            UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
            SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
            PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
            Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
            KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
            MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
            OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
            GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
            CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
        Length = 420

 Score = 140 (54.3 bits), Expect = 7.4e-09, P = 7.4e-09
 Identities = 30/98 (30%), Positives = 52/98 (53%)

Query:    65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL 124
             P    +L   +P  ++FV GLS  TSE+ ++  F  FG++  + L MD   N  RGF F+
Sbjct:   220 PKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFI 279

Query:   125 RYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQ 162
              Y  EE  ++ +E  + +   G+   +++A+ +   RQ
Sbjct:   280 TYTDEEPVKKLLESRYHQIGSGKCE-IKVAQPKEVYRQ 316

 Score = 107 (42.7 bits), Expect = 0.00070, P = 0.00069
 Identities = 25/82 (30%), Positives = 43/82 (52%)

Query:    75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRR 134
             Q   ++F+ GLS+ TS+  L      FG++V+  +  D +  R RGF F+ +       +
Sbjct:   145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204

Query:   135 AIEGMHGKFLDGRVIFVEIAKS 156
              +E    K LDG++I  + AK+
Sbjct:   205 VLELKEHK-LDGKLIDPKRAKA 225


>UNIPROTKB|H7BY16 [details] [associations]
            symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
            ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
            Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
        Length = 297

 Score = 137 (53.3 bits), Expect = 7.5e-09, P = 7.5e-09
 Identities = 36/110 (32%), Positives = 58/110 (52%)

Query:    50 RQGRGRGACFPLACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNL 109
             R+  GR     L     SP++ S  QP   LFV GLS  T+E++L+ +F G    V   +
Sbjct:   171 REIEGRAIRLELQGPRGSPNARS--QPSKTLFVKGLSEDTTEETLKESFDGS---VRARI 225

Query:   110 VMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAE 159
             V D+     +GF F+ + +EE+++ A E M    +DG  + ++ AK + E
Sbjct:   226 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 275


>DICTYBASE|DDB_G0288291 [details] [associations]
            symbol:DDB_G0288291 "putative RNA-binding protein"
            species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
            RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
            EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
            InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
            Uniprot:Q54J52
        Length = 123

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 35/97 (36%), Positives = 51/97 (52%)

Query:    68 PHSLST-CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRY 126
             P SL+     K  L+V G+S   + D LR AF  FG + +V L MD    + +GF F+ +
Sbjct:     4 PESLTKGVNKKNVLYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDF 63

Query:   127 ATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQA 163
                E++  A++ MH   + GRVI   IAK    L +A
Sbjct:    64 ELPEDAADALDNMHESEIFGRVIKCSIAKPIKNLNKA 100


>UNIPROTKB|Q9H0Z9 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA;IDA] [GO:0010830 "regulation of myotube
            differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
            [GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
            response, signal transduction by p53 class mediator resulting in
            cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
            signal transduction by p53 class mediator resulting in
            transcription of p21 class mediator" evidence=IDA] [GO:0007050
            "cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
            of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
            mRNA stabilization" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
            GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
            GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
            HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
            EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
            RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
            ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
            PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
            Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
            KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
            H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
            neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
            EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
            ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
            Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
        Length = 239

 Score = 134 (52.2 bits), Expect = 8.0e-09, P = 8.0e-09
 Identities = 33/102 (32%), Positives = 53/102 (51%)

Query:    60 PLACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPR 119
             PLA  P + H        T++FV GL + T++ SLR  F+GFG + E  ++ D+   + R
Sbjct:    17 PLAA-PGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSR 75

Query:   120 GFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELR 161
             G+ F+  A    + RA +  +   +DGR   V +A   A+ R
Sbjct:    76 GYGFVTMADRAAAERACKDPN-PIIDGRKANVNLAYLGAKPR 116


>ASPGD|ASPL0000074275 [details] [associations]
            symbol:AN4665 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
            HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
            ProteinModelPortal:Q5B465 STRING:Q5B465
            EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
            OMA:VFSQNRY Uniprot:Q5B465
        Length = 279

 Score = 136 (52.9 bits), Expect = 8.1e-09, P = 8.1e-09
 Identities = 30/104 (28%), Positives = 52/104 (50%)

Query:    64 LPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAF 123
             +PP     +  +    +++ GL F  SE  +   F  +G+ V +NLV DK   + RGFAF
Sbjct:    19 VPPEASWHADYRDTAYIYIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAF 78

Query:   124 LRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQAFKNN 167
             L+Y  +  +  A++ + G  + GRV+ V+  + +        NN
Sbjct:    79 LKYEDQRSTDLAVDNLGGATVLGRVLRVDHTRYKKRDEDEDTNN 122


>DICTYBASE|DDB_G0284663 [details] [associations]
            symbol:mrd1 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
            processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
            GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
            Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
            KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
            SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
            KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
        Length = 895

 Score = 144 (55.7 bits), Expect = 8.5e-09, P = 8.5e-09
 Identities = 31/93 (33%), Positives = 51/93 (54%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             R+FV  LS+ T E+ L   F  FG++ E+++ +D  + + +G AF+ Y   E + +A+  
Sbjct:   362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALND 421

Query:   139 MHGKFLDGRVIFVEIAKSRAELRQAFKNNPRQN 171
             M GK   GR+I V   K+ A  +Q  +N    N
Sbjct:   422 MDGKVFQGRLIHVLPGKA-APAKQFSENKDNNN 453

 Score = 110 (43.8 bits), Expect = 0.00076, P = 0.00076
 Identities = 25/91 (27%), Positives = 48/91 (52%)

Query:    75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRR 134
             +P +++ +  L F ++   +R  F  +G++  V  +  K     RGF F+ + TEEE++ 
Sbjct:   792 KPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVR-IPKKPNGGHRGFGFVEFLTEEEAKN 850

Query:   135 AIEGMHGKFLDGRVIFVEIA---KSRAELRQ 162
             A+E +      GR + ++ A   K+  ELR+
Sbjct:   851 AMEALGNSHFYGRHLVLQYAEQDKNIDELRE 881


>MGI|MGI:1926224 [details] [associations]
            symbol:Rbfox1 "RNA binding protein, fox-1 homolog (C.
            elegans) 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
            [GO:0005802 "trans-Golgi network" evidence=ISO] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=IEA] [GO:0050885
            "neuromuscular process controlling balance" evidence=IGI]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
            Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:1926224 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0005802 GO:GO:0043484 Reactome:REACT_24972 eggNOG:NOG258617
            GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 HOVERGEN:HBG000044
            InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ OrthoDB:EOG4NVZKS
            ChiTaRS:RBFOX1 EMBL:AF107204 EMBL:AY659954 EMBL:AY659955
            EMBL:AY659956 EMBL:AY659957 EMBL:AY659958 EMBL:AF191501
            EMBL:AB041596 EMBL:AK134833 EMBL:BC059002 IPI:IPI00121045
            IPI:IPI00605392 IPI:IPI00606138 IPI:IPI00607041 IPI:IPI00885248
            IPI:IPI00886040 IPI:IPI00886174 RefSeq:NP_067452.2
            RefSeq:NP_899011.2 UniGene:Mm.370334 ProteinModelPortal:Q9JJ43
            SMR:Q9JJ43 STRING:Q9JJ43 PhosphoSite:Q9JJ43 PaxDb:Q9JJ43
            PRIDE:Q9JJ43 Ensembl:ENSMUST00000056416 Ensembl:ENSMUST00000115841
            GeneID:268859 KEGG:mmu:268859 UCSC:uc007ycb.2 UCSC:uc007ycc.2
            UCSC:uc007ycf.2 UCSC:uc007ycg.2 UCSC:uc007ych.2 UCSC:uc007yci.2
            NextBio:392539 Bgee:Q9JJ43 CleanEx:MM_A2BP1 Genevestigator:Q9JJ43
            GermOnline:ENSMUSG00000008658 Uniprot:Q9JJ43
        Length = 396

 Score = 139 (54.0 bits), Expect = 8.5e-09, P = 8.5e-09
 Identities = 32/92 (34%), Positives = 54/92 (58%)

Query:    66 PSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLR 125
             PS ++ S  QPK RL VS + FR  +  LR  F  FG++++V ++ ++  ++  GF F+ 
Sbjct:   105 PSENTESKSQPK-RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK--GFGFVT 161

Query:   126 YATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157
             +    ++ RA E +HG  ++GR I V  A +R
Sbjct:   162 FENSADADRAREKLHGTVVEGRKIEVNNATAR 193


>UNIPROTKB|Q9NW13 [details] [associations]
            symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
            EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
            EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
            RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
            SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
            DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
            PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
            UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
            HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
            neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
            HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
            OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
            GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
            CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
            Uniprot:Q9NW13
        Length = 759

 Score = 143 (55.4 bits), Expect = 8.8e-09, P = 8.8e-09
 Identities = 32/94 (34%), Positives = 52/94 (55%)

Query:    66 PSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLR 125
             P          K RL +  LSF+ SED L+  F  FG ++EVN+   K   + RGF F++
Sbjct:   102 PKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQ 160

Query:   126 YATEEESRRAIEGMHGKFLDGRVIFVE--IAKSR 157
             +    E+ +A++GM+ K + GR + V+  +AK +
Sbjct:   161 FKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDK 194


>UNIPROTKB|Q3ZBT6 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
            OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
            RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
            SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
            GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
            Uniprot:Q3ZBT6
        Length = 288

 Score = 136 (52.9 bits), Expect = 8.8e-09, P = 8.8e-09
 Identities = 30/79 (37%), Positives = 47/79 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P   L V GLS  T+E  LR  F  +G + +V++V D+ + R RGFAF+ +   ++++ A
Sbjct:   116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175

Query:   136 IEGMHGKFLDGRVIFVEIA 154
              E  +G  LDGR I V+ +
Sbjct:   176 KERANGMELDGRRIRVDFS 194


>UNIPROTKB|E2RD37 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
            ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
            NextBio:20853966 Uniprot:E2RD37
        Length = 288

 Score = 136 (52.9 bits), Expect = 8.8e-09, P = 8.8e-09
 Identities = 30/79 (37%), Positives = 47/79 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P   L V GLS  T+E  LR  F  +G + +V++V D+ + R RGFAF+ +   ++++ A
Sbjct:   116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175

Query:   136 IEGMHGKFLDGRVIFVEIA 154
              E  +G  LDGR I V+ +
Sbjct:   176 KERANGMELDGRRIRVDFS 194


>UNIPROTKB|P62995 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
            transesterification reactions" evidence=TAS] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
            GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
            EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
            IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
            RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
            PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
            PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
            IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
            DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
            Ensembl:ENST00000342294 Ensembl:ENST00000382191
            Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
            KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
            H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
            neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
            PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
            GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
            Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
        Length = 288

 Score = 136 (52.9 bits), Expect = 8.8e-09, P = 8.8e-09
 Identities = 30/79 (37%), Positives = 47/79 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P   L V GLS  T+E  LR  F  +G + +V++V D+ + R RGFAF+ +   ++++ A
Sbjct:   116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175

Query:   136 IEGMHGKFLDGRVIFVEIA 154
              E  +G  LDGR I V+ +
Sbjct:   176 KERANGMELDGRRIRVDFS 194


>MGI|MGI:106016 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
            EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
            RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
            UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
            STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
            Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
            KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
            Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
            Uniprot:P62996
        Length = 288

 Score = 136 (52.9 bits), Expect = 8.8e-09, P = 8.8e-09
 Identities = 30/79 (37%), Positives = 47/79 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P   L V GLS  T+E  LR  F  +G + +V++V D+ + R RGFAF+ +   ++++ A
Sbjct:   116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175

Query:   136 IEGMHGKFLDGRVIFVEIA 154
              E  +G  LDGR I V+ +
Sbjct:   176 KERANGMELDGRRIRVDFS 194


>RGD|619886 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000302 "response to reactive oxygen species"
            evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
            GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
            RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
            SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
            PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
            KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
            Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
        Length = 288

 Score = 136 (52.9 bits), Expect = 8.8e-09, P = 8.8e-09
 Identities = 30/79 (37%), Positives = 47/79 (59%)

Query:    76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135
             P   L V GLS  T+E  LR  F  +G + +V++V D+ + R RGFAF+ +   ++++ A
Sbjct:   116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175

Query:   136 IEGMHGKFLDGRVIFVEIA 154
              E  +G  LDGR I V+ +
Sbjct:   176 KERANGMELDGRRIRVDFS 194


>TAIR|locus:2129590 [details] [associations]
            symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
            GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
            HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
            RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
            SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
            PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
            KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
            PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
            Uniprot:Q8W034
        Length = 411

 Score = 139 (54.0 bits), Expect = 9.2e-09, P = 9.2e-09
 Identities = 29/81 (35%), Positives = 47/81 (58%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LFV G+S+ T ED LR  F  +G++ +  ++ DK+  RPRGF F+ ++      R ++ 
Sbjct:     7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
              H   +D R + V+ A SR E
Sbjct:    67 KHS--IDTREVDVKRAMSREE 85


>UNIPROTKB|F1SMV6 [details] [associations]
            symbol:LOC100737174 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:CU856676
            Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
        Length = 365

 Score = 138 (53.6 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 35/110 (31%), Positives = 58/110 (52%)

Query:    50 RQGRGRGACFPLACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNL 109
             R+  GR     L     SP++ S  QP   LFV GLS  T+E++L+ +F G    +   +
Sbjct:   200 REIEGRAIRLELQGPRGSPNARS--QPSKTLFVKGLSEETTEETLKESFDGS---IRARI 254

Query:   110 VMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAE 159
             V D+     +GF F+ + +EE+++ A E M    +DG  + ++ AK + E
Sbjct:   255 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 304


>UNIPROTKB|K7GKR9 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
        Length = 196

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 25/66 (37%), Positives = 43/66 (65%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ GL+  T+E +L   F  +G++VEV L+ D+  N+ RGFAF+ + +  +++ A   
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   139 MHGKFL 144
             M+GK L
Sbjct:    69 MNGKLL 74


>UNIPROTKB|D4A5K7 [details] [associations]
            symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
            isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
            CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
            Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
            NextBio:664628 Uniprot:D4A5K7
        Length = 700

 Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 31/98 (31%), Positives = 55/98 (56%)

Query:    66 PSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLR 125
             P          K RL +  LSF+ SED L++ F  +G ++EVN+   K   + RGFAF++
Sbjct:   102 PKHKKAKVADKKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPR-KPDGKMRGFAFIQ 160

Query:   126 YATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQA 163
             +    E+ +A++G + K + GR + V+ A ++ + + A
Sbjct:   161 FKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDA 198


>UNIPROTKB|F1M460 [details] [associations]
            symbol:F1M460 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
            ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
            ArrayExpress:F1M460 Uniprot:F1M460
        Length = 224

 Score = 132 (51.5 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +L + GLSF T++DSLR  F+ +G L +  ++ D    R RGF F+ Y+  EE   A+  
Sbjct:     9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCA 68

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
                K +DGRV+  + A SR +
Sbjct:    69 RPHK-VDGRVVEPKRAVSRED 88


>RGD|1311336 [details] [associations]
            symbol:Rbm28 "RNA binding motif protein 28" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
            ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
            UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
        Length = 749

 Score = 142 (55.0 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 31/98 (31%), Positives = 55/98 (56%)

Query:    66 PSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLR 125
             P          K RL +  LSF+ SED L++ F  +G ++EVN+   K   + RGFAF++
Sbjct:   102 PKHKKAKVADKKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPR-KPDGKMRGFAFIQ 160

Query:   126 YATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQA 163
             +    E+ +A++G + K + GR + V+ A ++ + + A
Sbjct:   161 FKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDA 198


>TAIR|locus:2075860 [details] [associations]
            symbol:U11/U12-31K "U11/U12-31K" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0032502 "developmental process" evidence=IMP] [GO:0051302
            "regulation of cell division" evidence=IMP] InterPro:IPR000504
            InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
            PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
            GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
            GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
            GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
            GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
            EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
            ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
            EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
            TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
            ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
        Length = 261

 Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 27/89 (30%), Positives = 45/89 (50%)

Query:    77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136
             K+ L+VS L F  +   +   F  FG++  V ++ D+   + RG AF+ Y + E++ +A 
Sbjct:    56 KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 115

Query:   137 EGMHGKFLDGRVIFVEIAKSRAELRQAFK 165
               M  K L+GR + V IA       +  K
Sbjct:   116 RSMDAKILNGRKLTVSIAADNGRASEFIK 144


>UNIPROTKB|E2R9I0 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
            Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
        Length = 631

 Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 28/86 (32%), Positives = 51/86 (59%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T +++        ++SL+  F  FG+ + V ++ D  + + +GF F+ Y   E++ +A+E
Sbjct:   191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVE 249

Query:   138 GMHGKFLDGRVIFVEIAKSRAELRQA 163
              M+GK + G+VIFV  A+ + E RQA
Sbjct:   250 EMNGKEISGKVIFVGRAQKKVE-RQA 274

 Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             +F+  L       +L + F  FG ++   +V D+  N  +G+AF+ + T+E + +AIE M
Sbjct:   101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158

Query:   140 HGKFLDGRVIFVEIAKSRAELRQA 163
             +G  L+ R +FV   KSR E R+A
Sbjct:   159 NGMLLNDRKVFVGRFKSRKE-REA 181

 Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
 Identities = 23/88 (26%), Positives = 49/88 (55%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             L++  L     ++ LR  F  FG +    ++++    R +GF F+ +++ EE+ +A+  M
Sbjct:   296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353

Query:   140 HGKFLDGRVIFVEIAKSRAELRQAFKNN 167
             +G+ +  + ++V +A+ R E R+A   N
Sbjct:   354 NGRIVGSKPLYVALAQ-RKEERKAHLTN 380


>FB|FBgn0028577 [details] [associations]
            symbol:pUf68 "poly U binding factor 68kD" species:7227
            "Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
            evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
            [GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
            cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
            "regulation of cell growth" evidence=IMP] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
            EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
            GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
            GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
            GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
            GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
            KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
            EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
            RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
            RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
            RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
            ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
            STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
            KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
            InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
            GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
            Uniprot:Q8T6B9
        Length = 637

 Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 28/73 (38%), Positives = 44/73 (60%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             R++V  +SF   ED++R AF  FG +  +N+  D I  + +GFAF+ Y   E ++ A+E 
Sbjct:   131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190

Query:   139 MHGKFLDGRVIFV 151
             M+G  + GR I V
Sbjct:   191 MNGALMGGRNIKV 203


>TAIR|locus:2050992 [details] [associations]
            symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
            ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
            IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
            ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
            PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
            KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
            PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
            Uniprot:O22791
        Length = 404

 Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 28/81 (34%), Positives = 48/81 (59%)

Query:    79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138
             +LF+ G+S+ T E+ LR  F  FG++++V ++ +K   RPRGF F+ ++      R ++ 
Sbjct:     7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66

Query:   139 MHGKFLDGRVIFVEIAKSRAE 159
              H   +D R + V+ A SR E
Sbjct:    67 KH--HIDNRDVDVKRAMSREE 85


>RGD|1311201 [details] [associations]
            symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
            IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
            MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
            KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
            NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
        Length = 643

 Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query:    80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
             +FV  L       +L + F  FG ++   +V D+  N  +G+ F+ + T+EE+ RAIE M
Sbjct:   101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158

Query:   140 HGKFLDGRVIFVEIAKSRAELRQA 163
             +G FL+ R +FV   KSR + RQA
Sbjct:   159 NGMFLNDRKVFVGRFKSRRD-RQA 181

 Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 24/89 (26%), Positives = 53/89 (59%)

Query:    78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137
             T +++  L     ++ L++ F  FG  + V ++ D+ + + +GF F+ +   E++R+A++
Sbjct:   191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVD 249

Query:   138 GMHGKFLDGRVIFVEIAKSRAELRQAFKN 166
              M+GK L+G+ I+V  A+ + E +   K+
Sbjct:   250 EMNGKDLNGKQIYVGRAQKKVERQTELKH 278

 Score = 121 (47.7 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 30/102 (29%), Positives = 54/102 (52%)

Query:    66 PSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLR 125
             P   S+  CQ    L+V  L     ++ LR  F  FG +    + M+    R +GF F+ 
Sbjct:   294 PQDRSVR-CQG-VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVC 349

Query:   126 YATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAELRQAFKNN 167
             +++ EE+ +A+  M+G+ +  + ++V +A+ R E RQA  +N
Sbjct:   350 FSSPEEATKAVTEMNGRIVATKPLYVALAQ-RKEERQAHLSN 390

WARNING:  HSPs involving 819 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       171   0.00090  108 3  11 22  0.48    31
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1069
  No. of states in DFA:  554 (59 KB)
  Total size of DFA:  131 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.23u 0.11s 18.34t   Elapsed:  00:00:01
  Total cpu time:  18.24u 0.11s 18.35t   Elapsed:  00:00:01
  Start:  Thu May  9 23:02:30 2013   End:  Thu May  9 23:02:31 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	4.7e-32
BLAST match view associations BLAST with AT5G54580 AT5G54580 AT5G54580	protein from Arabidopsis thaliana	3.1e-19
BLAST match view associations BLAST with ORRM1 ORRM1 ORRM1 AT3G20930	protein from Arabidopsis thaliana	3.4e-19
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	1.6e-17
BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	6.0e-16
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	2.6e-15
BLAST match view associations BLAST with AT2G27330 AT2G27330 AT2G27330	protein from Arabidopsis thaliana	2.3e-14
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	7.9e-14
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	1.0e-13
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	2.7e-13
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	4.4e-13
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	4.4e-13
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	4.4e-13
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	5.6e-13
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	9.1e-13
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.2e-12
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	1.2e-12
BLAST match view associations BLAST with AT4G20030 AT4G20030 AT4G20030	protein from Arabidopsis thaliana	1.2e-12
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	1.5e-12
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	1.9e-12
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	2.4e-12
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	3.9e-12
BLAST match view associations BLAST with U1-70K U1-70K U1-70K AT3G50670	protein from Arabidopsis thaliana	5.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	6.4e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	6.4e-12
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	8.2e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.3e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.3e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.3e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.3e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	1.3e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	1.3e-11
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	1.3e-11
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	1.3e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	1.5e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.5e-11
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	1.8e-11
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	2.2e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	2.2e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	2.2e-11
BLAST match view associations BLAST with R09B3.2 R09B3.2 R09B3.2	gene from Caenorhabditis elegans	2.2e-11
BLAST match view associations BLAST with G5E5V7 G5E5V7 G5E5V7 Uncharacterized protein	protein from Bos taurus	2.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	2.8e-11
BLAST match view associations BLAST with AT2G43370 AT2G43370 AT2G43370	protein from Arabidopsis thaliana	2.8e-11
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	3.5e-11
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	4.5e-11
BLAST match view associations BLAST with AT5G59860 AT5G59860 AT5G59860	protein from Arabidopsis thaliana	4.5e-11
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	5.8e-11
BLAST match view associations BLAST with F1M2S4 F1M2S4 F1M2S4 Uncharacterized protein	protein from Rattus norvegicus	5.8e-11
BLAST match view associations BLAST with RBMXL1 RBMXL1 RBMXL1 RNA binding motif protein, X-linked-like-1	protein from Homo sapiens	7.0e-11
BLAST match view associations BLAST with RPS19 RPS19 RPS19 AT5G47320	protein from Arabidopsis thaliana	7.4e-11
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	8.8e-11
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	9.2e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich splicing factor 2	protein from Gallus gallus	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich splicing factor 2	protein from Bos taurus	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Uncharacterized protein	protein from Canis lupus familiaris	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich-splicing factor 2	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich splicing factor 2	protein from Homo sapiens	9.4e-11
BLAST match view associations BLAST with SRSF2 SRSF2 SRSF2 Serine/arginine-rich splicing factor 2	protein from Sus scrofa	9.4e-11
BLAST match view associations BLAST with Srsf2 Srsf2 Srsf2 serine/arginine-rich splicing factor 2	protein from Mus musculus	9.4e-11
BLAST match view associations BLAST with Srsf2 Srsf2 Srsf2 serine/arginine-rich splicing factor 2	gene from Rattus norvegicus	9.4e-11
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	1.0e-10
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	1.2e-10
BLAST match view associations BLAST with D4A2D2 D4A2D2 D4A2D2 Uncharacterized protein	protein from Rattus norvegicus	1.6e-10
BLAST match view associations BLAST with SRSF8 SRSF8 SRSF8 Serine/arginine-rich splicing factor 8	protein from Homo sapiens	1.7e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Gallus gallus	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	1.9e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X-linked	gene from Rattus norvegicus	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Rbmx	protein from Bos taurus	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Homo sapiens	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Pan troglodytes	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Macaca fascicularis	1.9e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X chromosome	protein from Mus musculus	1.9e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Canis lupus familiaris	1.9e-10
BLAST match view associations BLAST with TRA2A TRA2A TRA2A Uncharacterized protein	protein from Gallus gallus	2.0e-10
BLAST match view associations BLAST with MCA1010 MCA1010 MCA1010 RNA-binding protein	protein from Methylococcus capsulatus str. Bath	2.0e-10
BLAST match view associations BLAST with srsf2b srsf2b srsf2b serine/arginine-rich splicing factor 2b	gene_product from Danio rerio	2.0e-10
BLAST match view associations BLAST with srsf2a srsf2a srsf2a serine/arginine-rich splicing factor 2a	gene_product from Danio rerio	2.0e-10
BLAST match view associations BLAST with rnp-7 rnp-7 rnp-7	gene from Caenorhabditis elegans	2.2e-10
BLAST match view associations BLAST with SC35 SC35 SC35 AT5G64200	protein from Arabidopsis thaliana	2.2e-10
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X linked-like-1	protein from Mus musculus	2.4e-10
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	2.5e-10
BLAST match view associations BLAST with GSU1324 GSU1324 GSU1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	2.5e-10
BLAST match view associations BLAST with GSU_1324 GSU_1324 GSU_1324 RNA-binding protein	protein from Geobacter sulfurreducens PCA	2.5e-10
BLAST match view associations BLAST with GR-RBP6 GR-RBP6 GR-RBP6 AT1G18630	protein from Arabidopsis thaliana	2.5e-10