Query 030819
Match_columns 171
No_of_seqs 176 out of 2008
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:02:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01645 half-pint poly-U bin 99.9 8.5E-23 1.8E-27 170.0 8.3 147 2-157 105-284 (612)
2 TIGR01659 sex-lethal sex-letha 99.9 8.4E-23 1.8E-27 161.6 7.1 148 4-160 107-278 (346)
3 PLN03134 glycine-rich RNA-bind 99.9 3.1E-20 6.7E-25 130.2 13.7 87 73-159 30-116 (144)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.4E-21 5.2E-26 154.1 7.3 82 77-158 269-350 (352)
5 KOG0148 Apoptosis-promoting RN 99.8 6.1E-21 1.3E-25 141.8 7.6 139 7-160 65-241 (321)
6 TIGR01622 SF-CC1 splicing fact 99.8 5.9E-20 1.3E-24 150.9 11.0 142 5-155 90-264 (457)
7 KOG0144 RNA-binding protein CU 99.8 3.7E-20 7.9E-25 145.2 2.2 148 5-162 35-211 (510)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.9E-19 8.4E-24 141.4 7.9 144 5-157 4-171 (352)
9 KOG0148 Apoptosis-promoting RN 99.8 6.8E-19 1.5E-23 131.0 7.8 136 6-158 8-143 (321)
10 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1E-18 2.2E-23 145.3 9.7 82 75-156 293-374 (509)
11 KOG0124 Polypyrimidine tract-b 99.8 1.5E-19 3.2E-24 139.6 3.9 145 2-155 111-288 (544)
12 KOG0122 Translation initiation 99.8 4E-18 8.6E-23 125.2 10.5 85 73-157 185-269 (270)
13 TIGR01659 sex-lethal sex-letha 99.8 4.1E-18 8.9E-23 135.0 11.0 85 73-157 103-187 (346)
14 TIGR01628 PABP-1234 polyadenyl 99.8 6.9E-19 1.5E-23 148.0 6.6 89 75-164 283-371 (562)
15 PF00076 RRM_1: RNA recognitio 99.8 1E-17 2.2E-22 103.0 10.0 70 80-150 1-70 (70)
16 TIGR01628 PABP-1234 polyadenyl 99.7 1.9E-18 4.2E-23 145.3 6.1 145 6-160 2-170 (562)
17 KOG0121 Nuclear cap-binding pr 99.7 9.4E-18 2E-22 112.1 7.7 89 74-162 33-121 (153)
18 KOG0149 Predicted RNA-binding 99.7 1E-17 2.2E-22 122.5 7.2 78 77-155 12-89 (247)
19 KOG0117 Heterogeneous nuclear 99.7 7.9E-17 1.7E-21 127.1 11.1 92 65-156 71-163 (506)
20 KOG0113 U1 small nuclear ribon 99.7 9.4E-17 2E-21 121.0 10.9 91 67-157 91-181 (335)
21 PF14259 RRM_6: RNA recognitio 99.7 3.9E-16 8.4E-21 96.3 9.9 70 80-150 1-70 (70)
22 TIGR01648 hnRNP-R-Q heterogene 99.7 7.4E-17 1.6E-21 134.4 8.7 75 76-158 232-308 (578)
23 KOG0127 Nucleolar protein fibr 99.7 9.7E-17 2.1E-21 129.3 8.6 146 5-160 6-199 (678)
24 TIGR01645 half-pint poly-U bin 99.7 2.8E-16 6.1E-21 131.3 10.3 81 75-155 105-185 (612)
25 KOG0131 Splicing factor 3b, su 99.7 3.8E-17 8.1E-22 115.3 3.7 145 5-158 10-178 (203)
26 KOG0145 RNA-binding protein EL 99.7 2.4E-16 5.1E-21 117.1 7.6 84 74-157 275-358 (360)
27 PLN03120 nucleic acid binding 99.7 1.1E-15 2.3E-20 115.0 11.0 75 77-155 4-78 (260)
28 KOG0125 Ataxin 2-binding prote 99.7 1.1E-15 2.3E-20 116.7 10.7 84 72-157 91-174 (376)
29 KOG0126 Predicted RNA-binding 99.7 1.5E-17 3.3E-22 117.4 0.4 80 74-153 32-111 (219)
30 TIGR01648 hnRNP-R-Q heterogene 99.7 1.1E-15 2.4E-20 127.4 11.3 84 71-155 52-136 (578)
31 KOG0117 Heterogeneous nuclear 99.7 1E-16 2.2E-21 126.5 4.8 78 77-162 259-336 (506)
32 KOG0107 Alternative splicing f 99.6 7.5E-16 1.6E-20 108.2 8.1 80 75-159 8-87 (195)
33 KOG0130 RNA-binding protein RB 99.6 5.1E-16 1.1E-20 104.7 6.7 82 74-155 69-150 (170)
34 PLN03213 repressor of silencin 99.6 2.2E-15 4.8E-20 120.6 11.0 82 74-159 7-90 (759)
35 KOG4207 Predicted splicing fac 99.6 5.5E-16 1.2E-20 111.6 6.8 81 75-155 11-91 (256)
36 KOG0111 Cyclophilin-type pepti 99.6 1.7E-16 3.7E-21 115.2 4.1 86 75-160 8-93 (298)
37 TIGR01622 SF-CC1 splicing fact 99.6 6.8E-15 1.5E-19 121.0 14.0 84 74-158 86-169 (457)
38 KOG0144 RNA-binding protein CU 99.6 2.2E-15 4.8E-20 118.6 9.1 88 73-160 30-120 (510)
39 smart00362 RRM_2 RNA recogniti 99.6 1E-14 2.3E-19 89.0 9.7 72 79-152 1-72 (72)
40 KOG4205 RNA-binding protein mu 99.6 2.1E-15 4.7E-20 116.9 7.9 148 4-161 6-180 (311)
41 PLN03121 nucleic acid binding 99.6 8.6E-15 1.9E-19 108.7 10.6 76 75-154 3-78 (243)
42 KOG0108 mRNA cleavage and poly 99.6 3.7E-15 8.1E-20 120.2 9.4 86 78-163 19-104 (435)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 2.7E-15 5.9E-20 124.1 8.1 150 4-157 2-174 (481)
44 KOG0145 RNA-binding protein EL 99.6 1.4E-14 2.9E-19 107.9 10.7 89 73-161 37-125 (360)
45 KOG0114 Predicted RNA-binding 99.6 2.9E-14 6.2E-19 92.1 10.1 86 73-161 14-99 (124)
46 smart00360 RRM RNA recognition 99.6 1.8E-14 3.8E-19 87.6 8.8 71 82-152 1-71 (71)
47 COG0724 RNA-binding proteins ( 99.6 5.3E-14 1.2E-18 106.7 12.2 79 77-155 115-193 (306)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 6.9E-14 1.5E-18 115.8 12.4 79 74-157 272-351 (481)
49 KOG0147 Transcriptional coacti 99.5 6.5E-15 1.4E-19 118.9 5.2 80 78-157 279-358 (549)
50 KOG0131 Splicing factor 3b, su 99.5 1.4E-14 3E-19 102.4 6.1 82 74-155 6-87 (203)
51 cd00590 RRM RRM (RNA recogniti 99.5 1.8E-13 3.8E-18 83.9 10.3 74 79-153 1-74 (74)
52 KOG0123 Polyadenylate-binding 99.5 4.1E-14 8.8E-19 113.0 7.2 140 5-162 2-158 (369)
53 TIGR01642 U2AF_lg U2 snRNP aux 99.5 3.6E-14 7.8E-19 118.1 6.6 83 75-157 407-502 (509)
54 KOG0105 Alternative splicing f 99.5 1.4E-13 3.1E-18 97.7 7.1 80 75-157 4-83 (241)
55 KOG0124 Polypyrimidine tract-b 99.5 4.8E-14 1E-18 109.3 4.6 77 78-154 114-190 (544)
56 KOG4212 RNA-binding protein hn 99.5 6E-13 1.3E-17 105.3 10.4 82 74-156 41-123 (608)
57 smart00361 RRM_1 RNA recogniti 99.5 6.4E-13 1.4E-17 82.0 8.3 61 91-151 2-69 (70)
58 PF13893 RRM_5: RNA recognitio 99.4 1.2E-12 2.7E-17 77.1 8.7 56 94-154 1-56 (56)
59 KOG0127 Nucleolar protein fibr 99.4 3.4E-13 7.3E-18 109.2 6.8 85 76-160 4-88 (678)
60 KOG0109 RNA-binding protein LA 99.4 1.5E-13 3.2E-18 103.7 4.4 142 3-158 1-151 (346)
61 KOG0146 RNA-binding protein ET 99.4 1.7E-13 3.6E-18 102.5 4.2 89 72-160 280-368 (371)
62 KOG0109 RNA-binding protein LA 99.4 3.7E-13 8.1E-18 101.5 6.1 72 78-157 3-74 (346)
63 KOG0146 RNA-binding protein ET 99.4 1.3E-12 2.8E-17 97.7 7.8 90 74-164 16-108 (371)
64 KOG0415 Predicted peptidyl pro 99.4 1.1E-12 2.3E-17 101.5 7.0 88 72-159 234-321 (479)
65 KOG0132 RNA polymerase II C-te 99.3 6.4E-12 1.4E-16 105.3 10.1 79 76-160 420-498 (894)
66 KOG4206 Spliceosomal protein s 99.3 5.7E-12 1.2E-16 92.1 7.9 85 75-162 7-95 (221)
67 KOG0110 RNA-binding protein (R 99.3 7.7E-13 1.7E-17 109.8 2.9 151 6-162 517-698 (725)
68 KOG4208 Nucleolar RNA-binding 99.3 3.6E-11 7.7E-16 86.9 8.5 86 72-157 44-130 (214)
69 KOG0153 Predicted RNA-binding 99.2 4.8E-11 1E-15 92.1 9.3 79 72-156 223-302 (377)
70 KOG4205 RNA-binding protein mu 99.2 1.9E-11 4.2E-16 95.0 4.8 85 76-161 5-89 (311)
71 KOG0123 Polyadenylate-binding 99.1 1.6E-10 3.4E-15 92.5 8.1 74 78-157 2-75 (369)
72 KOG4212 RNA-binding protein hn 99.1 3.2E-10 6.9E-15 90.1 7.0 77 73-154 532-608 (608)
73 KOG1457 RNA binding protein (c 99.1 1.5E-09 3.3E-14 79.5 9.5 91 72-162 29-123 (284)
74 KOG4661 Hsp27-ERE-TATA-binding 99.1 5.2E-10 1.1E-14 91.6 7.6 82 76-157 404-485 (940)
75 KOG0533 RRM motif-containing p 99.1 1.3E-09 2.8E-14 82.0 9.0 83 75-158 81-163 (243)
76 KOG0226 RNA-binding proteins [ 99.0 1.8E-10 3.9E-15 85.6 4.1 86 71-156 184-269 (290)
77 KOG0110 RNA-binding protein (R 99.0 1.2E-09 2.5E-14 91.2 8.2 77 79-155 517-596 (725)
78 KOG4660 Protein Mei2, essentia 99.0 5.3E-10 1.2E-14 91.0 5.0 75 71-150 69-143 (549)
79 KOG1548 Transcription elongati 99.0 7.5E-09 1.6E-13 80.1 10.0 82 73-155 130-219 (382)
80 KOG0116 RasGAP SH3 binding pro 98.9 3.8E-09 8.3E-14 85.3 7.7 82 76-158 287-368 (419)
81 KOG0151 Predicted splicing reg 98.9 8.9E-09 1.9E-13 86.1 9.3 84 72-155 169-255 (877)
82 KOG4209 Splicing factor RNPS1, 98.9 4.9E-09 1.1E-13 78.8 6.3 84 73-157 97-180 (231)
83 KOG0106 Alternative splicing f 98.9 2.6E-09 5.6E-14 78.8 4.3 71 78-156 2-72 (216)
84 KOG0105 Alternative splicing f 98.8 1.5E-08 3.3E-13 72.4 7.3 64 75-145 113-176 (241)
85 PF04059 RRM_2: RNA recognitio 98.8 6E-08 1.3E-12 63.1 9.4 81 78-158 2-88 (97)
86 KOG4454 RNA binding protein (R 98.8 3.5E-09 7.7E-14 77.4 2.5 82 74-157 6-87 (267)
87 KOG0120 Splicing factor U2AF, 98.6 6.4E-08 1.4E-12 79.4 5.2 88 71-158 283-370 (500)
88 KOG0147 Transcriptional coacti 98.6 3E-08 6.4E-13 80.9 2.7 88 72-160 174-261 (549)
89 KOG4210 Nuclear localization s 98.5 7.9E-08 1.7E-12 74.5 2.4 84 75-159 182-266 (285)
90 KOG1190 Polypyrimidine tract-b 98.4 1.2E-06 2.5E-11 69.6 8.4 76 77-157 297-373 (492)
91 KOG4211 Splicing factor hnRNP- 98.4 1.6E-06 3.4E-11 70.2 8.1 80 73-156 6-85 (510)
92 KOG0129 Predicted RNA-binding 98.4 5.9E-07 1.3E-11 73.1 5.4 67 72-138 365-432 (520)
93 KOG4206 Spliceosomal protein s 98.3 4.2E-06 9.1E-11 61.6 8.8 79 72-155 141-220 (221)
94 KOG1995 Conserved Zn-finger pr 98.3 6.3E-07 1.4E-11 70.0 4.7 86 73-158 62-155 (351)
95 PF11608 Limkain-b1: Limkain b 98.3 4.1E-06 8.9E-11 52.5 7.3 70 78-157 3-77 (90)
96 KOG4211 Splicing factor hnRNP- 98.3 1.2E-06 2.7E-11 70.8 6.0 79 75-155 101-180 (510)
97 KOG1457 RNA binding protein (c 98.3 9.5E-07 2.1E-11 65.0 4.5 64 78-145 211-274 (284)
98 KOG1456 Heterogeneous nuclear 98.2 1.2E-05 2.5E-10 63.5 9.6 81 72-157 282-363 (494)
99 PF08777 RRM_3: RNA binding mo 98.2 3.5E-06 7.5E-11 55.9 5.7 70 78-153 2-76 (105)
100 KOG4849 mRNA cleavage factor I 98.1 5.1E-06 1.1E-10 64.9 4.8 78 74-151 77-156 (498)
101 KOG0128 RNA-binding protein SA 98.0 6.8E-07 1.5E-11 76.4 -0.7 141 4-154 667-812 (881)
102 KOG0106 Alternative splicing f 98.0 4.4E-06 9.6E-11 61.8 3.2 73 74-154 96-168 (216)
103 COG5175 MOT2 Transcriptional r 98.0 2.1E-05 4.6E-10 61.3 6.7 81 77-157 114-203 (480)
104 KOG0120 Splicing factor U2AF, 98.0 4.2E-05 9.2E-10 63.1 8.2 144 4-156 289-491 (500)
105 KOG1190 Polypyrimidine tract-b 97.9 8.3E-05 1.8E-09 59.3 8.1 84 70-157 407-491 (492)
106 KOG3152 TBP-binding protein, a 97.9 9.9E-06 2.1E-10 60.8 2.6 73 76-148 73-157 (278)
107 PF14605 Nup35_RRM_2: Nup53/35 97.8 7.8E-05 1.7E-09 43.1 5.1 52 78-136 2-53 (53)
108 KOG2314 Translation initiation 97.8 0.00023 5E-09 59.0 9.1 78 75-153 56-140 (698)
109 KOG4307 RNA binding protein RB 97.7 0.00017 3.6E-09 61.2 8.2 75 79-153 869-943 (944)
110 KOG0112 Large RNA-binding prot 97.6 0.00017 3.6E-09 62.6 6.7 148 6-159 374-533 (975)
111 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00043 9.2E-09 45.4 7.2 77 76-155 5-90 (100)
112 PF08952 DUF1866: Domain of un 97.6 0.00074 1.6E-08 47.0 8.4 77 73-158 23-108 (146)
113 KOG1365 RNA-binding protein Fu 97.4 0.00029 6.3E-09 56.0 5.3 80 75-155 278-360 (508)
114 KOG0129 Predicted RNA-binding 97.4 0.00052 1.1E-08 56.3 6.4 65 75-140 257-327 (520)
115 KOG1548 Transcription elongati 97.3 0.0014 2.9E-08 51.5 8.0 79 75-157 263-352 (382)
116 KOG1855 Predicted RNA-binding 97.3 0.00051 1.1E-08 55.2 5.4 74 68-141 222-308 (484)
117 KOG2193 IGF-II mRNA-binding pr 97.2 0.00054 1.2E-08 55.1 4.9 80 78-163 2-82 (584)
118 PF08675 RNA_bind: RNA binding 97.2 0.0035 7.6E-08 39.4 7.2 56 76-140 8-63 (87)
119 KOG2416 Acinus (induces apopto 97.0 0.0012 2.6E-08 55.2 5.2 78 73-156 440-521 (718)
120 PF10309 DUF2414: Protein of u 97.0 0.0055 1.2E-07 36.5 6.5 55 77-139 5-62 (62)
121 KOG1456 Heterogeneous nuclear 96.9 0.0072 1.6E-07 48.1 8.5 94 62-157 391-491 (494)
122 KOG4676 Splicing factor, argin 96.9 0.0031 6.7E-08 50.4 6.0 76 77-153 7-85 (479)
123 KOG1996 mRNA splicing factor [ 96.8 0.0054 1.2E-07 47.3 6.9 65 91-155 300-365 (378)
124 KOG2202 U2 snRNP splicing fact 96.8 0.00071 1.5E-08 51.0 1.9 62 93-155 84-146 (260)
125 KOG4307 RNA binding protein RB 96.8 0.0024 5.3E-08 54.4 5.0 84 73-157 430-514 (944)
126 KOG0115 RNA-binding protein p5 96.7 0.0023 5.1E-08 48.3 4.0 62 78-140 32-93 (275)
127 KOG1365 RNA-binding protein Fu 96.7 0.008 1.7E-07 48.0 7.0 60 78-138 162-225 (508)
128 KOG0128 RNA-binding protein SA 96.5 0.00015 3.2E-09 62.6 -4.0 69 77-145 667-735 (881)
129 KOG0112 Large RNA-binding prot 96.2 0.00092 2E-08 58.2 -0.5 82 73-155 368-449 (975)
130 PF15023 DUF4523: Protein of u 96.1 0.041 9E-07 38.2 7.0 76 72-155 81-160 (166)
131 KOG2068 MOT2 transcription fac 96.0 0.0028 6.1E-08 49.6 1.1 81 77-158 77-164 (327)
132 PF04847 Calcipressin: Calcipr 95.8 0.045 9.8E-07 39.9 6.5 62 90-157 8-71 (184)
133 PF07576 BRAP2: BRCA1-associat 95.7 0.3 6.5E-06 32.6 9.8 68 77-146 13-81 (110)
134 KOG0126 Predicted RNA-binding 95.6 0.008 1.7E-07 43.4 1.9 54 4-66 35-88 (219)
135 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.031 6.8E-07 40.5 4.5 82 75-156 5-97 (176)
136 KOG0149 Predicted RNA-binding 95.3 0.0022 4.7E-08 47.9 -1.8 59 4-71 12-70 (247)
137 KOG2135 Proteins containing th 95.3 0.012 2.7E-07 48.1 2.3 74 76-156 371-445 (526)
138 KOG4454 RNA binding protein (R 95.0 0.0023 4.9E-08 47.4 -2.3 126 6-143 11-149 (267)
139 KOG4410 5-formyltetrahydrofola 95.0 0.47 1E-05 36.8 10.0 59 75-139 328-394 (396)
140 KOG4660 Protein Mei2, essentia 94.7 0.087 1.9E-06 44.0 5.7 59 101-159 413-475 (549)
141 PF03880 DbpA: DbpA RNA bindin 94.6 0.32 6.9E-06 29.9 7.0 67 79-154 2-74 (74)
142 KOG2253 U1 snRNP complex, subu 94.6 0.041 8.9E-07 46.8 3.8 73 72-153 35-107 (668)
143 COG0724 RNA-binding proteins ( 94.5 0.013 2.9E-07 43.9 0.6 60 73-132 221-280 (306)
144 PF11767 SET_assoc: Histone ly 94.5 0.33 7.1E-06 29.3 6.5 55 88-151 11-65 (66)
145 KOG4285 Mitotic phosphoprotein 94.5 0.18 4E-06 39.2 6.7 64 77-148 197-260 (350)
146 KOG4574 RNA-binding protein (c 94.0 0.038 8.2E-07 48.4 2.4 75 79-159 300-376 (1007)
147 KOG4210 Nuclear localization s 93.0 0.058 1.2E-06 42.1 1.8 79 75-153 86-164 (285)
148 PLN03134 glycine-rich RNA-bind 92.6 0.024 5.1E-07 39.7 -0.9 55 4-67 34-88 (144)
149 KOG2591 c-Mpl binding protein, 90.6 0.5 1.1E-05 39.9 4.6 71 76-153 174-248 (684)
150 KOG0804 Cytoplasmic Zn-finger 90.0 1.8 3.8E-05 35.8 7.2 69 76-146 73-142 (493)
151 KOG0108 mRNA cleavage and poly 89.5 0.12 2.7E-06 42.6 0.4 70 5-83 19-93 (435)
152 KOG4676 Splicing factor, argin 89.4 0.11 2.4E-06 41.8 0.1 75 72-151 146-220 (479)
153 KOG0111 Cyclophilin-type pepti 85.7 0.18 4E-06 37.6 -0.6 62 7-77 13-74 (298)
154 KOG0113 U1 small nuclear ribon 85.2 0.2 4.3E-06 39.0 -0.7 54 4-66 101-154 (335)
155 KOG0107 Alternative splicing f 83.9 0.25 5.4E-06 35.6 -0.6 55 3-71 9-63 (195)
156 KOG0125 Ataxin 2-binding prote 82.9 0.29 6.2E-06 38.6 -0.7 54 6-70 98-151 (376)
157 KOG0121 Nuclear cap-binding pr 79.6 0.35 7.6E-06 33.1 -1.1 57 4-69 36-92 (153)
158 KOG4483 Uncharacterized conser 78.1 6.5 0.00014 32.2 5.4 56 76-138 390-446 (528)
159 PLN03213 repressor of silencin 71.4 1.1 2.4E-05 37.5 -0.4 48 5-65 11-58 (759)
160 PF07530 PRE_C2HC: Associated 70.8 8.1 0.00018 23.3 3.4 63 92-157 2-65 (68)
161 smart00596 PRE_C2HC PRE_C2HC d 67.8 8.1 0.00018 23.4 2.9 63 92-157 2-65 (69)
162 PF15513 DUF4651: Domain of un 66.4 19 0.00041 21.3 4.2 19 92-110 9-27 (62)
163 KOG4019 Calcineurin-mediated s 65.5 6.8 0.00015 28.5 2.6 74 78-157 11-90 (193)
164 PLN03120 nucleic acid binding 65.5 1.3 2.7E-05 34.1 -1.1 30 2-31 2-31 (260)
165 KOG2318 Uncharacterized conser 64.7 49 0.0011 28.6 7.8 80 74-153 171-304 (650)
166 KOG2193 IGF-II mRNA-binding pr 64.6 0.24 5.2E-06 40.4 -5.3 76 76-155 79-155 (584)
167 PF03468 XS: XS domain; Inter 63.2 21 0.00045 24.0 4.5 45 90-137 30-75 (116)
168 KOG2295 C2H2 Zn-finger protein 60.6 1.2 2.6E-05 37.6 -2.1 71 77-147 231-301 (648)
169 PRK14548 50S ribosomal protein 57.5 46 0.001 21.0 5.3 56 79-137 22-79 (84)
170 KOG2891 Surface glycoprotein [ 52.7 18 0.00038 28.3 3.1 85 74-158 146-269 (445)
171 KOG4365 Uncharacterized conser 51.3 2.9 6.4E-05 34.5 -1.3 79 78-157 4-82 (572)
172 PLN03121 nucleic acid binding 49.7 3.9 8.4E-05 31.1 -0.8 51 6-68 7-57 (243)
173 PRK11901 hypothetical protein; 48.8 50 0.0011 26.4 5.1 65 75-144 243-309 (327)
174 TIGR03636 L23_arch archaeal ri 48.5 64 0.0014 20.0 5.4 55 79-136 15-71 (77)
175 PF07292 NID: Nmi/IFP 35 domai 48.1 12 0.00026 23.9 1.4 26 73-98 48-73 (88)
176 KOG0122 Translation initiation 47.9 6 0.00013 30.2 -0.0 51 5-64 190-240 (270)
177 KOG4208 Nucleolar RNA-binding 46.7 6.1 0.00013 29.3 -0.1 76 4-88 49-130 (214)
178 PF10567 Nab6_mRNP_bdg: RNA-re 44.1 48 0.001 26.1 4.3 80 76-155 14-106 (309)
179 PF09707 Cas_Cas2CT1978: CRISP 43.5 69 0.0015 20.3 4.3 48 77-127 25-72 (86)
180 KOG0156 Cytochrome P450 CYP2 s 36.7 76 0.0016 26.9 4.8 59 81-149 36-97 (489)
181 PF11411 DNA_ligase_IV: DNA li 36.3 31 0.00068 18.0 1.6 16 87-102 19-34 (36)
182 COG5193 LHP1 La protein, small 33.0 22 0.00047 29.2 1.0 62 76-137 173-244 (438)
183 PRK11230 glycolate oxidase sub 32.9 2.7E+02 0.0059 23.7 7.6 63 77-140 189-255 (499)
184 PRK11558 putative ssRNA endonu 32.3 96 0.0021 20.2 3.7 49 77-128 27-75 (97)
185 PF04026 SpoVG: SpoVG; InterP 31.4 1.2E+02 0.0026 19.1 4.0 26 103-128 2-27 (84)
186 KOG0918 Selenium-binding prote 30.6 2.3E+02 0.0051 23.6 6.4 57 73-129 396-453 (476)
187 PRK13259 regulatory protein Sp 28.9 1.3E+02 0.0028 19.5 3.8 26 103-128 2-27 (94)
188 PF03439 Spt5-NGN: Early trans 27.9 80 0.0017 19.6 2.8 26 118-143 43-68 (84)
189 KOG4213 RNA-binding protein La 27.6 2E+02 0.0044 21.1 5.0 56 77-138 111-169 (205)
190 cd00027 BRCT Breast Cancer Sup 26.8 1.1E+02 0.0023 16.9 3.2 26 78-103 2-27 (72)
191 COG0150 PurM Phosphoribosylami 26.1 18 0.00038 29.1 -0.6 47 92-142 276-322 (345)
192 KOG4008 rRNA processing protei 25.8 67 0.0014 24.6 2.4 35 73-107 36-70 (261)
193 KOG4207 Predicted splicing fac 25.7 15 0.00032 27.5 -1.0 84 4-105 13-96 (256)
194 COG0030 KsgA Dimethyladenosine 25.1 1.1E+02 0.0023 23.8 3.5 28 77-104 95-122 (259)
195 TIGR00387 glcD glycolate oxida 22.3 3.7E+02 0.0081 22.0 6.5 62 77-139 131-197 (413)
196 PF15063 TC1: Thyroid cancer p 21.2 62 0.0014 20.0 1.3 26 79-104 27-52 (79)
197 KOG1295 Nonsense-mediated deca 20.9 1.7E+02 0.0037 24.0 4.0 68 77-144 7-77 (376)
198 PF11823 DUF3343: Protein of u 20.6 1.6E+02 0.0035 17.5 3.1 25 120-144 2-26 (73)
199 KOG0226 RNA-binding proteins [ 20.0 66 0.0014 24.9 1.5 76 77-153 96-174 (290)
No 1
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=8.5e-23 Score=169.99 Aligned_cols=147 Identities=18% Similarity=0.342 Sum_probs=120.2
Q ss_pred ceeeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCC-----------
Q 030819 2 AVLGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHS----------- 70 (171)
Q Consensus 2 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 70 (171)
.++|.|||+++.++++++.+...|...+++ .+.....+..+++++|++|+.+..+..+..
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I---------~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~ 175 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPI---------KSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 175 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCE---------EEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe
Confidence 467999999999999999999999998887 344444444455666666665543321100
Q ss_pred ----------------------CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCC
Q 030819 71 ----------------------LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYAT 128 (171)
Q Consensus 71 ----------------------~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~ 128 (171)
........+|||+||++++++++|+++|+.||.|.++++..++.+|+++|||||+|.+
T Consensus 176 GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 176 GRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred cceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 0111234789999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 129 EEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 129 ~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
.++|..|++.||+..++|+.|+|.++...
T Consensus 256 ~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999999999998754
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.88 E-value=8.4e-23 Score=161.57 Aligned_cols=148 Identities=22% Similarity=0.334 Sum_probs=119.4
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCC-------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHS------------- 70 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 70 (171)
-+.|||+++.+++++..|.+.|...+++ .+........+.++++++++.+..+..+..
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V---------~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPI---------NTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCE---------EEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 3679999999999999999999998877 333344444455666666666654432211
Q ss_pred ---------CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 030819 71 ---------LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141 (171)
Q Consensus 71 ---------~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g 141 (171)
.......++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+.||+
T Consensus 178 ~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 178 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 11223467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCC--eEEEEEEecCcHHH
Q 030819 142 KFLDG--RVIFVEIAKSRAEL 160 (171)
Q Consensus 142 ~~i~g--~~i~v~~~~~~~~~ 160 (171)
..+.+ ++|+|.++......
T Consensus 258 ~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CccCCCceeEEEEECCccccc
Confidence 98866 68999998865443
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=3.1e-20 Score=130.21 Aligned_cols=87 Identities=39% Similarity=0.666 Sum_probs=81.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
....+++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.|++..|+|+.|+|.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34557799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcHH
Q 030819 153 IAKSRAE 159 (171)
Q Consensus 153 ~~~~~~~ 159 (171)
++.++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9976543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.84 E-value=2.4e-21 Score=154.10 Aligned_cols=82 Identities=29% Similarity=0.442 Sum_probs=78.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~ 156 (171)
+..|||+|||+++++++|+++|++||.|.+++++.|+.+|.++|||||+|.+.++|.+||..|||..++|+.|+|.|+.+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cH
Q 030819 157 RA 158 (171)
Q Consensus 157 ~~ 158 (171)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 65
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=6.1e-21 Score=141.84 Aligned_cols=139 Identities=21% Similarity=0.338 Sum_probs=120.4
Q ss_pred eecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC---------------
Q 030819 7 LPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL--------------- 71 (171)
Q Consensus 7 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 71 (171)
+||+.+.-.+..+.|...|..++.+ .+...+.+..+.++|+++|+.+.-...+..+
T Consensus 65 vfvgdls~eI~~e~lr~aF~pFGev---------S~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 65 VFVGDLSPEIDNEKLREAFAPFGEV---------SDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred EEehhcchhcchHHHHHHhcccccc---------ccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 8999999999999999999999988 5555666777888888888877544322211
Q ss_pred -----------------------CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCC
Q 030819 72 -----------------------STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYAT 128 (171)
Q Consensus 72 -----------------------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~ 128 (171)
...+++++|||||++..++|++|++.|..||+|.+|++..++ ||+||.|.+
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~t 209 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFET 209 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecc
Confidence 456788999999999999999999999999999999999887 999999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEEecCcHHH
Q 030819 129 EEESRRAIEGMHGKFLDGRVIFVEIAKSRAEL 160 (171)
Q Consensus 129 ~~~a~~al~~l~g~~i~g~~i~v~~~~~~~~~ 160 (171)
+|+|..||..+|+.+|.|+.+++.|.+.....
T Consensus 210 kEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 210 KEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred hhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 99999999999999999999999999866543
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.82 E-value=5.9e-20 Score=150.90 Aligned_cols=142 Identities=26% Similarity=0.381 Sum_probs=114.9
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCC----------------
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSP---------------- 68 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 68 (171)
..|||+++.+++++..+...|...+++ .+...+.....++.++++|+.+.....+
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~F~~~G~v---------~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i 160 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEFFSKVGKV---------RDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPI 160 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCe---------eEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeee
Confidence 469999999999999999999988766 3333334444455666666655431100
Q ss_pred -----------------CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHH
Q 030819 69 -----------------HSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEE 131 (171)
Q Consensus 69 -----------------~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~ 131 (171)
......+...+|||+|||..+++++|+++|..||.|..+.+..++.+|+++|||||+|.+.++
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 161 IVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred EEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 001112336899999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEEec
Q 030819 132 SRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 132 a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
|..|+..|+|..+.|+.|.|.++.
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEcc
Confidence 999999999999999999999975
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=3.7e-20 Score=145.23 Aligned_cols=148 Identities=20% Similarity=0.339 Sum_probs=123.7
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCC--------------
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHS-------------- 70 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 70 (171)
.+||||.++-.+++..+..-|++.+.+ .+...+.+..++.+++.||+.+.....+..
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V---------~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNV---------YEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCce---------eEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 479999999999999999999998888 666667777788888999887654332111
Q ss_pred --------CC----CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 030819 71 --------LS----TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138 (171)
Q Consensus 71 --------~~----~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 138 (171)
++ .-...++|||+.|++.++|.+++++|.+||.|++|.|.+|. .+.+||||||.|.+++.|..||+.
T Consensus 106 ~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 106 HHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred CcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHh
Confidence 11 11236799999999999999999999999999999999998 899999999999999999999999
Q ss_pred hCCce-eCC--eEEEEEEecCcHHHHH
Q 030819 139 MHGKF-LDG--RVIFVEIAKSRAELRQ 162 (171)
Q Consensus 139 l~g~~-i~g--~~i~v~~~~~~~~~~~ 162 (171)
|||.. +.| .+|.|.|+..++++..
T Consensus 185 ~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred hccceeeccCCCceEEEecccCCCchH
Confidence 99985 444 6899999987765544
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=3.9e-19 Score=141.45 Aligned_cols=144 Identities=22% Similarity=0.320 Sum_probs=118.1
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCC--------------
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHS-------------- 70 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 70 (171)
..|||+++++++++..+.+.|...+++ .+...+....++++++++++.+..+..+..
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i---------~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~ 74 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEI---------ESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT 74 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCE---------EEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCee
Confidence 469999999999999999999999988 444444554556677777776654432211
Q ss_pred --------CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 030819 71 --------LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (171)
Q Consensus 71 --------~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~ 142 (171)
........+|||+|||+.+++++|+.+|.+||.|..+.+..+..++.++|||||+|.+.++|+.|++.|||.
T Consensus 75 i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~ 154 (352)
T TIGR01661 75 IKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT 154 (352)
T ss_pred EEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 112235678999999999999999999999999999999998888999999999999999999999999999
Q ss_pred eeCC--eEEEEEEecCc
Q 030819 143 FLDG--RVIFVEIAKSR 157 (171)
Q Consensus 143 ~i~g--~~i~v~~~~~~ 157 (171)
.+.| .+|.|.++...
T Consensus 155 ~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 155 TPSGCTEPITVKFANNP 171 (352)
T ss_pred ccCCCceeEEEEECCCC
Confidence 9876 57888887644
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=6.8e-19 Score=130.99 Aligned_cols=136 Identities=20% Similarity=0.355 Sum_probs=111.6
Q ss_pred eeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCC
Q 030819 6 FLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSLSTCQPKTRLFVSGL 85 (171)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl 85 (171)
.|||||+..+.++..|..-|...+++.++....+.......... ...+.+....-..+||+.|
T Consensus 8 tlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p-----------------~nQsk~t~~~hfhvfvgdl 70 (321)
T KOG0148|consen 8 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAP-----------------GNQSKPTSNQHFHVFVGDL 70 (321)
T ss_pred eEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCc-----------------ccCCCCccccceeEEehhc
Confidence 59999999999999999999999999665543332222111111 1111122222457999999
Q ss_pred CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCcH
Q 030819 86 SFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRA 158 (171)
Q Consensus 86 ~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~~ 158 (171)
..+++-++|++.|.+||+|.++++++|..|+++||||||.|...++|++||..|||.=|.++.|+-.|+..+.
T Consensus 71 s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 71 SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997665
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.78 E-value=1e-18 Score=145.30 Aligned_cols=82 Identities=26% Similarity=0.467 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
....+|||+|||..+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cC
Q 030819 155 KS 156 (171)
Q Consensus 155 ~~ 156 (171)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 53
No 11
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.5e-19 Score=139.61 Aligned_cols=145 Identities=18% Similarity=0.345 Sum_probs=126.6
Q ss_pred ceeeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC----------
Q 030819 2 AVLGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL---------- 71 (171)
Q Consensus 2 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (171)
||||.+|||+++|++.++.+...|..++|+ .+..-.++.-+.+.++++|+++.-|..+.-+
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPI---------KSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG 181 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPI---------KSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 181 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCc---------ceeecccccccccccceEEEEEeCcHHHHHHHHHhcccccc
Confidence 799999999999999999999999999999 7777778888899999999988877643211
Q ss_pred --------CCC---------------CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCC
Q 030819 72 --------STC---------------QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYAT 128 (171)
Q Consensus 72 --------~~~---------------~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~ 128 (171)
+.+ ..-..|||..+.++++++||+..|+.||+|..|.+.+++..+.++||||++|.+
T Consensus 182 GRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n 261 (544)
T KOG0124|consen 182 GRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 261 (544)
T ss_pred CccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecc
Confidence 111 112589999999999999999999999999999999999778899999999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 129 EEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 129 ~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
..+...|+..+|-..++|.-|+|-...
T Consensus 262 ~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 262 LQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred ccchHHHhhhcchhhcccceEeccccc
Confidence 999999999999999999999986543
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4e-18 Score=125.24 Aligned_cols=85 Identities=29% Similarity=0.471 Sum_probs=81.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+..+|-|.||+.++++++|+++|..||.|..+.+.+|+.||.++|||||.|.+.++|.+||..|||.-++...|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCc
Q 030819 153 IAKSR 157 (171)
Q Consensus 153 ~~~~~ 157 (171)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99986
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=4.1e-18 Score=134.96 Aligned_cols=85 Identities=24% Similarity=0.385 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.|+.+++++|||||+|.+.++|++|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCc
Q 030819 153 IAKSR 157 (171)
Q Consensus 153 ~~~~~ 157 (171)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98764
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.76 E-value=6.9e-19 Score=148.02 Aligned_cols=89 Identities=27% Similarity=0.612 Sum_probs=82.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
..+.+|||+||++.+++++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|.+|+..|||..+.|++|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 346789999999999999999999999999999999995 8999999999999999999999999999999999999999
Q ss_pred cCcHHHHHhh
Q 030819 155 KSRAELRQAF 164 (171)
Q Consensus 155 ~~~~~~~~~~ 164 (171)
..+..+....
T Consensus 362 ~~k~~~~~~~ 371 (562)
T TIGR01628 362 QRKEQRRAHL 371 (562)
T ss_pred cCcHHHHHHH
Confidence 9887665543
No 15
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.76 E-value=1e-17 Score=103.00 Aligned_cols=70 Identities=30% Similarity=0.685 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 80 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
|||+|||+++++++|+++|.+||.|..+.+..+ .++..+|+|||+|.+.++|+.|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 4899999999999999999999999999999999885
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.74 E-value=1.9e-18 Score=145.32 Aligned_cols=145 Identities=18% Similarity=0.283 Sum_probs=112.5
Q ss_pred eeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCC---------------
Q 030819 6 FLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHS--------------- 70 (171)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 70 (171)
-|||+++..++++..+...|...+++ .+.....+..++++++++++.+..+..+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v---------~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i 72 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPV---------LSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPI 72 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCE---------EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeE
Confidence 48999999999999999999998876 333333333334445555554443322111
Q ss_pred ---------CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 030819 71 ---------LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141 (171)
Q Consensus 71 ---------~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g 141 (171)
........+|||+|||.++++++|+++|++||.|.+|.+..+. +|+++|||||+|.+.++|.+|++.++|
T Consensus 73 ~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 73 RIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred EeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 1112234579999999999999999999999999999999887 899999999999999999999999999
Q ss_pred ceeCCeEEEEEEecCcHHH
Q 030819 142 KFLDGRVIFVEIAKSRAEL 160 (171)
Q Consensus 142 ~~i~g~~i~v~~~~~~~~~ 160 (171)
..+.|+.|.|.....+..+
T Consensus 152 ~~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHER 170 (562)
T ss_pred cEecCceEEEecccccccc
Confidence 9999999999876655433
No 17
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=9.4e-18 Score=112.10 Aligned_cols=89 Identities=26% Similarity=0.479 Sum_probs=82.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
...+++|||+||+..++|++|.++|.++|+|..+.+-.|+.+..+.|||||+|.+.++|+.|+..++|..++.+.|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcHHHHH
Q 030819 154 AKSRAELRQ 162 (171)
Q Consensus 154 ~~~~~~~~~ 162 (171)
.-.-.+.+|
T Consensus 113 D~GF~eGRQ 121 (153)
T KOG0121|consen 113 DAGFVEGRQ 121 (153)
T ss_pred cccchhhhh
Confidence 876655554
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=1e-17 Score=122.52 Aligned_cols=78 Identities=32% Similarity=0.645 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
-++||||+|+|.+..+.|+++|++||+|.+..++.|+.+|++||||||+|.+.++|.+|++. ..-.|+|++..|..+-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999984 4467899988887653
No 19
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=7.9e-17 Score=127.09 Aligned_cols=92 Identities=26% Similarity=0.462 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 030819 65 PPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL 144 (171)
Q Consensus 65 ~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i 144 (171)
|++.......+.++.||||.||.++.|++|..+|++.|+|.+++++.|+.+|.+||||||.|.+.++|+.|++.||+.+|
T Consensus 71 PpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei 150 (506)
T KOG0117|consen 71 PPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI 150 (506)
T ss_pred CCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc
Confidence 33445555668899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -CCeEEEEEEecC
Q 030819 145 -DGRVIFVEIAKS 156 (171)
Q Consensus 145 -~g~~i~v~~~~~ 156 (171)
.|+.|.|+.+..
T Consensus 151 r~GK~igvc~Sva 163 (506)
T KOG0117|consen 151 RPGKLLGVCVSVA 163 (506)
T ss_pred cCCCEeEEEEeee
Confidence 789999987653
No 20
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=9.4e-17 Score=121.03 Aligned_cols=91 Identities=32% Similarity=0.642 Sum_probs=83.7
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 030819 67 SPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDG 146 (171)
Q Consensus 67 ~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g 146 (171)
...+....++-+||||+.|+++++|..|+..|..||+|+.|.|+.|+.||+++|||||+|.++.++..|.+..+|..|+|
T Consensus 91 ~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 33344456788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCc
Q 030819 147 RVIFVEIAKSR 157 (171)
Q Consensus 147 ~~i~v~~~~~~ 157 (171)
+.|.|.+.+.+
T Consensus 171 rri~VDvERgR 181 (335)
T KOG0113|consen 171 RRILVDVERGR 181 (335)
T ss_pred cEEEEEecccc
Confidence 99999987654
No 21
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.69 E-value=3.9e-16 Score=96.25 Aligned_cols=70 Identities=40% Similarity=0.738 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 80 l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
|||+|||+++++++|+++|..||.|..+.+..+++ +.++|+|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 99999999999999999999999999999999874
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.69 E-value=7.4e-17 Score=134.36 Aligned_cols=75 Identities=29% Similarity=0.543 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGF--GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
..++|||+||+.++++++|+++|++| |.|.++.++ ++||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 999998765 36999999999999999999999999999999999
Q ss_pred ecCcH
Q 030819 154 AKSRA 158 (171)
Q Consensus 154 ~~~~~ 158 (171)
+++..
T Consensus 304 Akp~~ 308 (578)
T TIGR01648 304 AKPVD 308 (578)
T ss_pred ccCCC
Confidence 98753
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=9.7e-17 Score=129.35 Aligned_cols=146 Identities=24% Similarity=0.364 Sum_probs=109.4
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCC---------------------
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLAC--------------------- 63 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 63 (171)
..|||.+++++..+..+...|+..+|+.....-+ .......||++++.|.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt---------~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~ 76 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVT---------NKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRI 76 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEec---------CCCcccccCccceeeehHhHHHHHHHHhhcCccccee
Confidence 5699999999999999999999999986633211 0011111111111110
Q ss_pred ------------------CCC-------C--CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC
Q 030819 64 ------------------LPP-------S--PHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIAN 116 (171)
Q Consensus 64 ------------------~~~-------~--~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g 116 (171)
.+. . +.......+.+.|.|.|||+.+...+|+.+|+.||.|.++.|++.++.+
T Consensus 77 l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk 156 (678)
T KOG0127|consen 77 LNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK 156 (678)
T ss_pred cccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC
Confidence 000 0 0011223447899999999999999999999999999999999888545
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCcHHH
Q 030819 117 RPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRAEL 160 (171)
Q Consensus 117 ~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~~~~ 160 (171)
.| |||||.|....+|..||+.+||..|.|++|.|.||.++...
T Consensus 157 lc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 157 LC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred cc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 45 99999999999999999999999999999999999877543
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=2.8e-16 Score=131.29 Aligned_cols=81 Identities=35% Similarity=0.631 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
...++|||+||++++++++|+++|.+||.|.++.++.|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q 030819 155 K 155 (171)
Q Consensus 155 ~ 155 (171)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 25
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.67 E-value=3.8e-17 Score=115.35 Aligned_cols=145 Identities=24% Similarity=0.326 Sum_probs=121.2
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCC--------------
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHS-------------- 70 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 70 (171)
..+|||++.-..++.++..-+...+|+ .++......-+...+|++|+++.....+.-
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpV---------v~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrp 80 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPV---------VNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRP 80 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCce---------eeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCce
Confidence 469999999999999999999998888 555555555556677888877766554322
Q ss_pred ---------CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 030819 71 ---------LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE-VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (171)
Q Consensus 71 ---------~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 140 (171)
....+.+..+||+||.+.+++..|.++|+.||.+.. -.++++..+|.++|||||.|.+.+.+.+|++.+|
T Consensus 81 Irv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 81 IRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred eEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 134456689999999999999999999999998755 5788999899999999999999999999999999
Q ss_pred CceeCCeEEEEEEecCcH
Q 030819 141 GKFLDGRVIFVEIAKSRA 158 (171)
Q Consensus 141 g~~i~g~~i~v~~~~~~~ 158 (171)
|..++.++|.|.++..+.
T Consensus 161 gq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKD 178 (203)
T ss_pred cchhcCCceEEEEEEecC
Confidence 999999999999987553
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.4e-16 Score=117.13 Aligned_cols=84 Identities=27% Similarity=0.400 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
...++.|||-||.+++.|.-|+++|..||.|..+++++|..+.+|+|||||.+.+-++|..||..|||..+.++.|.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 34578999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCc
Q 030819 154 AKSR 157 (171)
Q Consensus 154 ~~~~ 157 (171)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 7654
No 27
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=1.1e-15 Score=115.02 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
.++|||+|||+.+++++|+++|+.||.|.++.++.++. .+|||||+|.+.++|+.||. |+|..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57999999999999999999999999999999988763 46899999999999999996 99999999999999986
No 28
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.1e-15 Score=116.71 Aligned_cols=84 Identities=31% Similarity=0.615 Sum_probs=76.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
......++|+|+|||+...+-||+.+|++||.|.+|.|+.+. .-+||||||+|++.++|++|-++|||..+.|++|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 344556799999999999999999999999999999999875 447899999999999999999999999999999999
Q ss_pred EEecCc
Q 030819 152 EIAKSR 157 (171)
Q Consensus 152 ~~~~~~ 157 (171)
..+..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998765
No 29
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=1.5e-17 Score=117.37 Aligned_cols=80 Identities=28% Similarity=0.601 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
-.++..|||||||+++||.||...|++||+|..+.+++|+.||+++||||+.|++-.+..-|+..|||..|.|+.|+|.-
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999974
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.65 E-value=1.1e-15 Score=127.43 Aligned_cols=84 Identities=26% Similarity=0.413 Sum_probs=75.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD-GRVI 149 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~-g~~i 149 (171)
...+...++|||+|||++++|++|+++|++||.|.+++|+.| .+|+++|||||+|.+.++|++||+.||+..+. |+.|
T Consensus 52 ~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 52 GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 334556799999999999999999999999999999999999 59999999999999999999999999999884 7777
Q ss_pred EEEEec
Q 030819 150 FVEIAK 155 (171)
Q Consensus 150 ~v~~~~ 155 (171)
.|+++.
T Consensus 131 ~V~~S~ 136 (578)
T TIGR01648 131 GVCISV 136 (578)
T ss_pred cccccc
Confidence 776653
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1e-16 Score=126.47 Aligned_cols=78 Identities=31% Similarity=0.504 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~ 156 (171)
-..|||.||+.++|++.|+.+|.+||.|..|..++ .||||.|.+.++|-+||+.+||..|+|..|.|.+|++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--------ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 35799999999999999999999999999987664 4999999999999999999999999999999999998
Q ss_pred cHHHHH
Q 030819 157 RAELRQ 162 (171)
Q Consensus 157 ~~~~~~ 162 (171)
..+.+.
T Consensus 331 ~~k~k~ 336 (506)
T KOG0117|consen 331 VDKKKK 336 (506)
T ss_pred hhhhcc
Confidence 765543
No 32
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=7.5e-16 Score=108.20 Aligned_cols=80 Identities=28% Similarity=0.498 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
.-.++|||+||+..+++.+|+..|..||.|..+.|...+ .|||||+|++..+|+.|+..|+|..|+|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 347899999999999999999999999999999887655 489999999999999999999999999999999998
Q ss_pred cCcHH
Q 030819 155 KSRAE 159 (171)
Q Consensus 155 ~~~~~ 159 (171)
..+..
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76543
No 33
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=5.1e-16 Score=104.75 Aligned_cols=82 Identities=23% Similarity=0.477 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
.-.++.|||.++...+++++|.+.|..||+|+.+.+..|+.||..+||++|+|.+.+.|++|+..+||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 030819 154 AK 155 (171)
Q Consensus 154 ~~ 155 (171)
.-
T Consensus 149 ~F 150 (170)
T KOG0130|consen 149 CF 150 (170)
T ss_pred EE
Confidence 74
No 34
>PLN03213 repressor of silencing 3; Provisional
Probab=99.64 E-value=2.2e-15 Score=120.61 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATE--EESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~--~~a~~al~~l~g~~i~g~~i~v 151 (171)
...+.+||||||++.+++++|+.+|..||.|..+.|+ +.+| ||||||+|.+. .++.+||..|||..++|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3456799999999999999999999999999999998 4477 89999999976 7899999999999999999999
Q ss_pred EEecCcHH
Q 030819 152 EIAKSRAE 159 (171)
Q Consensus 152 ~~~~~~~~ 159 (171)
..|++.--
T Consensus 83 NKAKP~YL 90 (759)
T PLN03213 83 EKAKEHYL 90 (759)
T ss_pred eeccHHHH
Confidence 99987643
No 35
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.64 E-value=5.5e-16 Score=111.59 Aligned_cols=81 Identities=36% Similarity=0.685 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
..-.+|-|-||.+.++.++|+.+|++||.|-+|.|.+|+-|+.++|||||.|.+..+|+.|+++|+|..|+|+.|.|+++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c
Q 030819 155 K 155 (171)
Q Consensus 155 ~ 155 (171)
+
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 5
No 36
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.7e-16 Score=115.24 Aligned_cols=86 Identities=31% Similarity=0.533 Sum_probs=81.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
...++||||+|..++++.-|...|-.||.|.++.+..|..++++||||||+|...|+|.+||..||+.++.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHH
Q 030819 155 KSRAEL 160 (171)
Q Consensus 155 ~~~~~~ 160 (171)
++.+-.
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 987543
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=6.8e-15 Score=121.00 Aligned_cols=84 Identities=24% Similarity=0.462 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
..+.++|||+|||..+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|.+||. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred ecCcH
Q 030819 154 AKSRA 158 (171)
Q Consensus 154 ~~~~~ 158 (171)
+....
T Consensus 165 ~~~~~ 169 (457)
T TIGR01622 165 SQAEK 169 (457)
T ss_pred cchhh
Confidence 76544
No 38
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=2.2e-15 Score=118.59 Aligned_cols=88 Identities=30% Similarity=0.499 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-e--CCeEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF-L--DGRVI 149 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~-i--~g~~i 149 (171)
.+.+.-++||+-+|+.++|.||+++|++||.|.+|.+++|+.++.++|||||.|.+.++|.+|+.+||+.+ + +.++|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34567799999999999999999999999999999999999999999999999999999999999999886 4 44689
Q ss_pred EEEEecCcHHH
Q 030819 150 FVEIAKSRAEL 160 (171)
Q Consensus 150 ~v~~~~~~~~~ 160 (171)
+|.++....++
T Consensus 110 qvk~Ad~E~er 120 (510)
T KOG0144|consen 110 QVKYADGERER 120 (510)
T ss_pred eecccchhhhc
Confidence 99999877655
No 39
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=1e-14 Score=89.00 Aligned_cols=72 Identities=36% Similarity=0.692 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 79 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
+|||+|||..+++++|+++|..||.+..+.+..++ +.++|+|||+|.+.++|++|+..++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988776 7788999999999999999999999999999998863
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.61 E-value=2.1e-15 Score=116.93 Aligned_cols=148 Identities=22% Similarity=0.388 Sum_probs=123.4
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL------------ 71 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 71 (171)
.|+||+|.+.|+.+++.+...+...+.+ .+.-.+....+.+++++.++.+..+......
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev---------~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ 76 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEV---------TDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRS 76 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCce---------eeEEEeccCCCCCcccccceecCCCcchheeecccccccCCcc
Confidence 5899999999999999999999887777 4444455555688888888888755532221
Q ss_pred ---------------CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 030819 72 ---------------STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136 (171)
Q Consensus 72 ---------------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al 136 (171)
.......+|||++||.++++.++++.|.+||.|..+.++.|..+.+.+||+||.|.+++++++++
T Consensus 77 ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~ 156 (311)
T KOG4205|consen 77 VEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT 156 (311)
T ss_pred ccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec
Confidence 01112448999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhCCceeCCeEEEEEEecCcHHHH
Q 030819 137 EGMHGKFLDGRVIFVEIAKSRAELR 161 (171)
Q Consensus 137 ~~l~g~~i~g~~i~v~~~~~~~~~~ 161 (171)
. ..-+.|+|+.+.|..|.++..+.
T Consensus 157 ~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 157 L-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred c-cceeeecCceeeEeeccchhhcc
Confidence 7 67788999999999999887654
No 41
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.61 E-value=8.6e-15 Score=108.66 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
+.+.+|||+||++.+++++|+++|+.||.|.+|.++.+. ..+|+|||+|.++++++.|+. |+|..|.+++|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 346899999999999999999999999999999999875 344899999999999999996 9999999999999764
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.60 E-value=3.7e-15 Score=120.20 Aligned_cols=86 Identities=30% Similarity=0.631 Sum_probs=81.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
..+||||+|+++++++|..+|++.|.|..++++.|+++|+++||||++|.+.+.+..|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHHh
Q 030819 158 AELRQA 163 (171)
Q Consensus 158 ~~~~~~ 163 (171)
....+.
T Consensus 99 ~~~~~~ 104 (435)
T KOG0108|consen 99 KNAERS 104 (435)
T ss_pred chhHHH
Confidence 655543
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.60 E-value=2.7e-15 Score=124.14 Aligned_cols=150 Identities=14% Similarity=0.156 Sum_probs=99.5
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCcccc-cc---cccc------cccc---ccCCCCC-CCCCCCCCCCC--
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIK-RR---DFDS------LFSL---RQGRGRG-ACFPLACLPPS-- 67 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~------~~~~---~~~~~~~-~~~~~~~~~~~-- 67 (171)
+..|||+++.++++++.+.+.|...+++.....-.. .. .+.. +... ......+ .-.+.......
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~ 81 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK 81 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc
Confidence 346999999999999999999999998854211100 00 0110 1100 0000001 01111111000
Q ss_pred -CC----CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 030819 68 -PH----SLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (171)
Q Consensus 68 -~~----~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~ 142 (171)
.. ..........|||+||++.+++++|+++|+.||.|.++.+..+.. .|+|||+|.+.++|.+|++.|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~ 157 (481)
T TIGR01649 82 RDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGA 157 (481)
T ss_pred cCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCC
Confidence 00 001112234799999999999999999999999999999877542 369999999999999999999999
Q ss_pred eeCC--eEEEEEEecCc
Q 030819 143 FLDG--RVIFVEIAKSR 157 (171)
Q Consensus 143 ~i~g--~~i~v~~~~~~ 157 (171)
.|.+ ..|+|.|++..
T Consensus 158 ~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 158 DIYNGCCTLKIEYAKPT 174 (481)
T ss_pred cccCCceEEEEEEecCC
Confidence 9965 58999998753
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.4e-14 Score=107.85 Aligned_cols=89 Identities=29% Similarity=0.491 Sum_probs=83.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
..+..+.|.|.=||.++|+++++.+|...|+|++|++++|+-+|++.|||||.|.++++|++|+..|||..+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcHHHH
Q 030819 153 IAKSRAELR 161 (171)
Q Consensus 153 ~~~~~~~~~ 161 (171)
++++....-
T Consensus 117 yARPSs~~I 125 (360)
T KOG0145|consen 117 YARPSSDSI 125 (360)
T ss_pred eccCChhhh
Confidence 999876543
No 45
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.9e-14 Score=92.15 Aligned_cols=86 Identities=19% Similarity=0.393 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
++..++.|||.|||+++|.++..++|.+||.|..+++-..++ .+|-|||.|++..+|.+|+++|+|..++++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 445678999999999999999999999999999999976554 46999999999999999999999999999999999
Q ss_pred EecCcHHHH
Q 030819 153 IAKSRAELR 161 (171)
Q Consensus 153 ~~~~~~~~~ 161 (171)
+-.+....+
T Consensus 91 yyq~~~~~~ 99 (124)
T KOG0114|consen 91 YYQPEDAFK 99 (124)
T ss_pred ecCHHHHHH
Confidence 887665544
No 46
>smart00360 RRM RNA recognition motif.
Probab=99.58 E-value=1.8e-14 Score=87.62 Aligned_cols=71 Identities=39% Similarity=0.709 Sum_probs=66.7
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 82 VSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 82 V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
|+|||..+++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|.+|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999888779999999999999999999999999999999998873
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=5.3e-14 Score=106.70 Aligned_cols=79 Identities=39% Similarity=0.724 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
..+|||+|||.++++++|.++|..||.|..+.+..++.+|.++|||||+|.+.+++..|++.++|..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999998899999999999999999999999999999999999999965
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.55 E-value=6.9e-14 Score=115.83 Aligned_cols=79 Identities=27% Similarity=0.357 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 74 CQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 74 ~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
.+++.+|||+||++ .+++++|+++|+.||.|..++++.++ +|+|||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 69999999999999999999998764 4899999999999999999999999999999999
Q ss_pred EecCc
Q 030819 153 IAKSR 157 (171)
Q Consensus 153 ~~~~~ 157 (171)
+++.+
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98654
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.54 E-value=6.5e-15 Score=118.93 Aligned_cols=80 Identities=38% Similarity=0.719 Sum_probs=75.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
..||||||++++++++|+.+|+.||.|..+.+..|.++|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.....+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999876543
No 50
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.54 E-value=1.4e-14 Score=102.43 Aligned_cols=82 Identities=28% Similarity=0.428 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
.....+|||+||+..++++.|.++|-+.|+|..+.+.+|+.+...+||||++|.++|+|+-|+..||..++.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ec
Q 030819 154 AK 155 (171)
Q Consensus 154 ~~ 155 (171)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 76
No 51
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=1.8e-13 Score=83.88 Aligned_cols=74 Identities=39% Similarity=0.722 Sum_probs=68.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 79 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
+|+|+|||..+++++|+++|+.+|.|..+.+..++ .+..+|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999877 347789999999999999999999999999999998864
No 52
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4.1e-14 Score=112.97 Aligned_cols=140 Identities=19% Similarity=0.399 Sum_probs=110.5
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC-------------
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL------------- 71 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 71 (171)
+-+||| .+.++..+.+.|+..++. .+...-.+. + +=+++++.+..+..+..+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v---------~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~ 66 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPV---------LSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKP 66 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCc---------eeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcE
Confidence 458899 889999999999998888 333333333 2 445666666555432221
Q ss_pred ----CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 030819 72 ----STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGR 147 (171)
Q Consensus 72 ----~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~ 147 (171)
....+...+||-||+++++..+|.++|+.||.|.+|++..+. .| ++|| ||+|.++++|++|++.+||..+.|+
T Consensus 67 ~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 67 IRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred EEeehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 122333449999999999999999999999999999999998 66 8999 9999999999999999999999999
Q ss_pred EEEEEEecCcHHHHH
Q 030819 148 VIFVEIAKSRAELRQ 162 (171)
Q Consensus 148 ~i~v~~~~~~~~~~~ 162 (171)
+|-|.....+.++..
T Consensus 144 ki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 144 KIYVGLFERKEEREA 158 (369)
T ss_pred eeEEeeccchhhhcc
Confidence 999998877766543
No 53
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.50 E-value=3.6e-14 Score=118.13 Aligned_cols=83 Identities=20% Similarity=0.410 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHHhcCCCeEEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 030819 75 QPKTRLFVSGLSFRT----------SEDSLRNAFQGFGQLVEVNLVMDK---IANRPRGFAFLRYATEEESRRAIEGMHG 141 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~----------~~~~l~~~f~~~G~i~~~~~~~~~---~~g~~~g~~fv~f~~~~~a~~al~~l~g 141 (171)
.+..+|+|.|+...- ..++|++.|++||.|..|.|..+. .++..+|++||+|.+.++|++|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 356789999986421 125789999999999999998652 3456789999999999999999999999
Q ss_pred ceeCCeEEEEEEecCc
Q 030819 142 KFLDGRVIFVEIAKSR 157 (171)
Q Consensus 142 ~~i~g~~i~v~~~~~~ 157 (171)
..++|+.|.|.|....
T Consensus 487 r~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 487 RKFNDRVVVAAFYGED 502 (509)
T ss_pred CEECCeEEEEEEeCHH
Confidence 9999999999987643
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.4e-13 Score=97.71 Aligned_cols=80 Identities=25% Similarity=0.445 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
...++|||+|||.++.+.+|+++|.+||.|.+|.+...+ ..-+||||+|++..+|+.|+..-+|..++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 346899999999999999999999999999999886543 23479999999999999999999999999999999998
Q ss_pred cCc
Q 030819 155 KSR 157 (171)
Q Consensus 155 ~~~ 157 (171)
+.-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 754
No 55
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.8e-14 Score=109.34 Aligned_cols=77 Identities=36% Similarity=0.682 Sum_probs=74.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
+.||||.+++++.|+.|+..|..||+|+++.+-+|+-|++++||+||+|+-+|.|+-|++.+||..++|+.|+|...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999743
No 56
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.46 E-value=6e-13 Score=105.34 Aligned_cols=82 Identities=18% Similarity=0.419 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQ-GFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
....+.+||+|||++..|.+|+++|. +.|+|..|.+..|. +|+++|||.|+|+++|.+++|++.||-..+.|++|.|.
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34456799999999999999999997 68999999999998 99999999999999999999999999999999999998
Q ss_pred EecC
Q 030819 153 IAKS 156 (171)
Q Consensus 153 ~~~~ 156 (171)
....
T Consensus 120 Ed~d 123 (608)
T KOG4212|consen 120 EDHD 123 (608)
T ss_pred ccCc
Confidence 7764
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=99.45 E-value=6.4e-13 Score=82.00 Aligned_cols=61 Identities=26% Similarity=0.679 Sum_probs=55.5
Q ss_pred HHHHHHHHh----cCCCeEEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 91 EDSLRNAFQ----GFGQLVEVN-LVMDKIA--NRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 91 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
+++|+++|. +||.|.++. +..++.+ +.++|+|||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999995 7777666 899999999999999999999999999999999876
No 58
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.44 E-value=1.2e-12 Score=77.09 Aligned_cols=56 Identities=36% Similarity=0.717 Sum_probs=50.5
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 94 LRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 94 l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
|.++|++||.|.++.+..+. +++|||+|.+.++|..|+..|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999886543 589999999999999999999999999999999986
No 59
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3.4e-13 Score=109.19 Aligned_cols=85 Identities=32% Similarity=0.525 Sum_probs=80.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
.+.||||++||+.++.++|.++|+.+|+|..+.++.++.++.++|||||.|...+++++|+..+.+..+.|+.|.|..++
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcHHH
Q 030819 156 SRAEL 160 (171)
Q Consensus 156 ~~~~~ 160 (171)
.+...
T Consensus 84 ~R~r~ 88 (678)
T KOG0127|consen 84 KRARS 88 (678)
T ss_pred ccccc
Confidence 66543
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.42 E-value=1.5e-13 Score=103.67 Aligned_cols=142 Identities=18% Similarity=0.264 Sum_probs=99.9
Q ss_pred eeeeeecCceeecccchhhcccCCcCCCCCCCCcc-------ccccccc--cccccccCCCCCCCCCCCCCCCCCCCCCC
Q 030819 3 VLGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFT-------IKRRDFD--SLFSLRQGRGRGACFPLACLPPSPHSLST 73 (171)
Q Consensus 3 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (171)
|..+|||||+.-+.+.+.+..-|+..+.+-..-.- ++..... .+.+. ..-+--+...... .+...
T Consensus 1 ~~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNL--hgYtLhg~nInVe----aSksK 74 (346)
T KOG0109|consen 1 MPVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNL--HGYTLHGVNINVE----ASKSK 74 (346)
T ss_pred CccchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhc--ccceecceEEEEE----ecccc
Confidence 45689999999999999998888887777221110 0000000 00000 0000000000000 00112
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
....++++|+||.+.++..+|+..|++||.+.+|++++ +|+||.|.-.++|..|+..|++..+.|++++|..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 44678999999999999999999999999999999986 5999999999999999999999999999999999
Q ss_pred ecCcH
Q 030819 154 AKSRA 158 (171)
Q Consensus 154 ~~~~~ 158 (171)
+.++.
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 87664
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.7e-13 Score=102.47 Aligned_cols=89 Identities=19% Similarity=0.382 Sum_probs=84.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
...++++.|||-.||.+..+.+|..+|-.||.|.+.++..|+.|..+|.||||.|.+..+++.||..|||..|.-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcHHH
Q 030819 152 EIAKSRAEL 160 (171)
Q Consensus 152 ~~~~~~~~~ 160 (171)
...+++...
T Consensus 360 QLKRPkdan 368 (371)
T KOG0146|consen 360 QLKRPKDAN 368 (371)
T ss_pred hhcCccccC
Confidence 999888653
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.41 E-value=3.7e-13 Score=101.52 Aligned_cols=72 Identities=31% Similarity=0.601 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
.+|||||||.++++.+|+.+|++||.|.+|+|+++ ||||..++...++.|+..|||.+|+|..|.|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999875 8999999999999999999999999999999998877
No 63
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.3e-12 Score=97.71 Aligned_cols=90 Identities=27% Similarity=0.452 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-C--CeEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL-D--GRVIF 150 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i-~--g~~i~ 150 (171)
..+.++||||-|.+.-+|+|++.+|..||.|.+|.+.+.. .|.+|||+||.|.+..+|+.||..|||... - ...|.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 3467899999999999999999999999999999999988 799999999999999999999999999864 3 35799
Q ss_pred EEEecCcHHHHHhh
Q 030819 151 VEIAKSRAELRQAF 164 (171)
Q Consensus 151 v~~~~~~~~~~~~~ 164 (171)
|.++...+++.-++
T Consensus 95 VK~ADTdkER~lRR 108 (371)
T KOG0146|consen 95 VKFADTDKERTLRR 108 (371)
T ss_pred EEeccchHHHHHHH
Confidence 99998776665433
No 64
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.1e-12 Score=101.48 Aligned_cols=88 Identities=25% Similarity=0.462 Sum_probs=82.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
...++...|||-.|.+.+++++|.-+|+.||.|..|.+++|..||.+..||||+|.+.+++++|.-.|.+..|+.++|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcHH
Q 030819 152 EIAKSRAE 159 (171)
Q Consensus 152 ~~~~~~~~ 159 (171)
.++.+-..
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99875443
No 65
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.35 E-value=6.4e-12 Score=105.29 Aligned_cols=79 Identities=20% Similarity=0.424 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
-++|||||+|+.++++.+|..+|+.||+|.+|.++..+ |||||.+....+|++|+.+|....+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 36799999999999999999999999999999998765 899999999999999999999999999999999998
Q ss_pred CcHHH
Q 030819 156 SRAEL 160 (171)
Q Consensus 156 ~~~~~ 160 (171)
.+.-+
T Consensus 494 g~G~k 498 (894)
T KOG0132|consen 494 GKGPK 498 (894)
T ss_pred cCCcc
Confidence 76543
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.33 E-value=5.7e-12 Score=92.14 Aligned_cols=85 Identities=22% Similarity=0.487 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRN----AFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~----~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.+..||||.||+..+..++|++ +|++||.|.+|.... +.+.+|-|||.|.+.+.|-.|+..|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999988 999999999987753 788999999999999999999999999999999999
Q ss_pred EEEecCcHHHHH
Q 030819 151 VEIAKSRAELRQ 162 (171)
Q Consensus 151 v~~~~~~~~~~~ 162 (171)
|++|+.....-.
T Consensus 84 iqyA~s~sdii~ 95 (221)
T KOG4206|consen 84 IQYAKSDSDIIA 95 (221)
T ss_pred eecccCccchhh
Confidence 999997765543
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=7.7e-13 Score=109.79 Aligned_cols=151 Identities=23% Similarity=0.326 Sum_probs=108.6
Q ss_pred eeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCC-----------------
Q 030819 6 FLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSP----------------- 68 (171)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 68 (171)
.+||-|+.|+-++..+...|...+.+-.......+.... ...+.|++++.+..+.++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~------k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l 590 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPAN------KYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKL 590 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccc------cccccceeEEEecCHHHHHHHHHHhcCceecCceE
Confidence 388889999988888888877755542111110000000 112224444444333310
Q ss_pred --------------CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 030819 69 --------------HSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRR 134 (171)
Q Consensus 69 --------------~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~ 134 (171)
.........+.|+|.|||+..+-.+++.+|..||.+.+++++.....+.++|||||+|-++.+|.+
T Consensus 591 ~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 591 ELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred EEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHH
Confidence 111222335799999999999999999999999999999998876678889999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEEecCcHHHHH
Q 030819 135 AIEGMHGKFLDGRVIFVEIAKSRAELRQ 162 (171)
Q Consensus 135 al~~l~g~~i~g~~i~v~~~~~~~~~~~ 162 (171)
|+.+|.+..+.|+.|.++|++.-..+..
T Consensus 671 A~~al~STHlyGRrLVLEwA~~d~~~e~ 698 (725)
T KOG0110|consen 671 AFDALGSTHLYGRRLVLEWAKSDNTMEA 698 (725)
T ss_pred HHHhhcccceechhhheehhccchHHHH
Confidence 9999998999999999999987655443
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.26 E-value=3.6e-11 Score=86.85 Aligned_cols=86 Identities=20% Similarity=0.354 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcC-CCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGF-GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
+......-+||..+|..+.+.++..+|.+| |.+..+++-+++.||.++|||||+|.+.+.|.-|.+.||+..++++-|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344556789999999999999999999988 7788889989999999999999999999999999999999999999999
Q ss_pred EEEecCc
Q 030819 151 VEIAKSR 157 (171)
Q Consensus 151 v~~~~~~ 157 (171)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9887765
No 69
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=4.8e-11 Score=92.11 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK-FLDGRVIF 150 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~-~i~g~~i~ 150 (171)
+.+....+|||++|...+++.+|+++|.+||+|.++++...+ ++|||+|.+.++|+.|.+.+-.. .|+|.+|+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 445567899999999999999999999999999999988765 79999999999999998876554 57999999
Q ss_pred EEEecC
Q 030819 151 VEIAKS 156 (171)
Q Consensus 151 v~~~~~ 156 (171)
|.|+++
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999998
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.19 E-value=1.9e-11 Score=95.04 Aligned_cols=85 Identities=34% Similarity=0.584 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
+.+++||++|+++++++.|++.|.+||+|.+|.+++|+.++.++||+||+|.+.+.+.++|.. .-+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999999998873 4477899999999888
Q ss_pred CcHHHH
Q 030819 156 SRAELR 161 (171)
Q Consensus 156 ~~~~~~ 161 (171)
++....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 876553
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.6e-10 Score=92.55 Aligned_cols=74 Identities=20% Similarity=0.415 Sum_probs=69.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
..|||| +++++.+|.+.|+.+|++.++++.+|. + +.|||||.|.++++|++||..+|...+.|++|++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999998 6 9999999999999999999999999999999999998643
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.08 E-value=3.2e-10 Score=90.12 Aligned_cols=77 Identities=25% Similarity=0.469 Sum_probs=69.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
.....++|||.|||.+.||..|++-|..||.|....++. .|+++| .|.|.++++|++|+..|+|..++|+.|+|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 345568899999999999999999999999999988842 688877 899999999999999999999999999998
Q ss_pred Ee
Q 030819 153 IA 154 (171)
Q Consensus 153 ~~ 154 (171)
+.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 73
No 73
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.07 E-value=1.5e-09 Score=79.51 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEee-cCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCe
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVM-DKIANRPRGFAFLRYATEEESRRAIEGMHGKFL---DGR 147 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~-~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i---~g~ 147 (171)
...+.-+||||.+||-++...+|..+|..|-.-+.+.+.. ++...-++-+||+.|.+...|.+|+..|||..+ .+.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 3455578999999999999999999999986666555543 222223567999999999999999999999998 477
Q ss_pred EEEEEEecCcHHHHH
Q 030819 148 VIFVEIAKSRAELRQ 162 (171)
Q Consensus 148 ~i~v~~~~~~~~~~~ 162 (171)
.|+++++++..++.+
T Consensus 109 tLhiElAKSNtK~kr 123 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKR 123 (284)
T ss_pred eeEeeehhcCccccc
Confidence 899999998776543
No 74
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=5.2e-10 Score=91.56 Aligned_cols=82 Identities=34% Similarity=0.523 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
-++.|||.+|+..+...+|+.+|.+||.|.-..++.+..+.-.+.||||++.+.++|.+||+.||...|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35789999999999999999999999999999999988888888999999999999999999999999999999999887
Q ss_pred Cc
Q 030819 156 SR 157 (171)
Q Consensus 156 ~~ 157 (171)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 54
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.05 E-value=1.3e-09 Score=81.99 Aligned_cols=83 Identities=30% Similarity=0.500 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
....+|+|.|||+.+.++||+++|..||.+..+.+-.++ .|.+.|.|-|.|...++|.+|++.+||..++|..|++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344789999999999999999999999999999998888 9999999999999999999999999999999999999876
Q ss_pred cCcH
Q 030819 155 KSRA 158 (171)
Q Consensus 155 ~~~~ 158 (171)
.+..
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 5443
No 76
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.05 E-value=1.8e-10 Score=85.64 Aligned_cols=86 Identities=22% Similarity=0.431 Sum_probs=78.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.........||+|.|.-+++++.|...|.+|-.....++++|+.+|+++||+||.|.+..++.+|+..++|..++.++|+
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 34566788999999999999999999999998888889999999999999999999999999999999999999999998
Q ss_pred EEEecC
Q 030819 151 VEIAKS 156 (171)
Q Consensus 151 v~~~~~ 156 (171)
++-+..
T Consensus 264 lRkS~w 269 (290)
T KOG0226|consen 264 LRKSEW 269 (290)
T ss_pred hhhhhH
Confidence 865443
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=1.2e-09 Score=91.25 Aligned_cols=77 Identities=27% Similarity=0.563 Sum_probs=69.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIAN---RPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 79 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g---~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
+|||.||+++++.++|...|...|.|..+.|...++.. .+.|||||+|.+.++|++|+..|+|..|.|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 49999999999999999999999999999887665321 245999999999999999999999999999999999987
No 78
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=5.3e-10 Score=91.00 Aligned_cols=75 Identities=21% Similarity=0.378 Sum_probs=67.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.....+..+|+|.|||..+++++|.++|+.||+|..++.. -..+|..||+|.|..+|++|+++|++..+.|+.|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3445678899999999999999999999999999997664 34468999999999999999999999999999888
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.96 E-value=7.5e-09 Score=80.13 Aligned_cols=82 Identities=27% Similarity=0.364 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE--------VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL 144 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i 144 (171)
....++.|||.|||.++|-+++.++|+++|-|.. |.+.++. .|+.+|=|++.|.-.+++.-|+..|++..+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3455678999999999999999999999998753 6788887 699999999999999999999999999999
Q ss_pred CCeEEEEEEec
Q 030819 145 DGRVIFVEIAK 155 (171)
Q Consensus 145 ~g~~i~v~~~~ 155 (171)
.|+.|+|+.|+
T Consensus 209 rg~~~rVerAk 219 (382)
T KOG1548|consen 209 RGKKLRVERAK 219 (382)
T ss_pred cCcEEEEehhh
Confidence 99999998875
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.92 E-value=3.8e-09 Score=85.25 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
...+|||.|||.+++.++|+++|..||.|+...|....-.++..+||||+|.+.++++.||.+ +-..+++++|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345699999999999999999999999999987765442345448999999999999999995 4567899999999887
Q ss_pred CcH
Q 030819 156 SRA 158 (171)
Q Consensus 156 ~~~ 158 (171)
+..
T Consensus 366 ~~~ 368 (419)
T KOG0116|consen 366 PGF 368 (419)
T ss_pred ccc
Confidence 643
No 81
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.90 E-value=8.9e-09 Score=86.13 Aligned_cols=84 Identities=21% Similarity=0.373 Sum_probs=74.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKI---ANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRV 148 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~ 148 (171)
...+..+.+||+||++.+++++|...|..||+|..+++++.+. ....+-||||.|-+..++++|+..|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 3456678999999999999999999999999999999987652 2334569999999999999999999999999999
Q ss_pred EEEEEec
Q 030819 149 IFVEIAK 155 (171)
Q Consensus 149 i~v~~~~ 155 (171)
+++-|++
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 9999985
No 82
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.87 E-value=4.9e-09 Score=78.77 Aligned_cols=84 Identities=20% Similarity=0.407 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+...+||+|+.+.++.+++...|+.||.|..+.+..|+..|.++||+||+|.+.+.++.|+. |+|..+.|..+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 44567899999999999999999999999999999999999889999999999999999999999 99999999999998
Q ss_pred EecCc
Q 030819 153 IAKSR 157 (171)
Q Consensus 153 ~~~~~ 157 (171)
+.+-+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87643
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=2.6e-09 Score=78.78 Aligned_cols=71 Identities=25% Similarity=0.618 Sum_probs=65.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~ 156 (171)
..+||++||+.+.+.+|..+|..||.+-++.+.. ||+||+|.+..+|..|+..||+..+.|..+.|++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 3689999999999999999999999999988743 7999999999999999999999999999999999884
No 84
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=1.5e-08 Score=72.37 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=57.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD 145 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~ 145 (171)
.....|.|.+||++.+|.+|+++..+-|.|+...+.+| |++.|+|...|+++-|+..|....+.
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 34568999999999999999999999999999998876 69999999999999999999887653
No 85
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.83 E-value=6e-08 Score=63.11 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=70.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc--CCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQG--FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD----GRVIFV 151 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~----g~~i~v 151 (171)
+||.|.|||...+.++|.+++.. .|....+-++.|..++.+.|||||.|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998864 467788889999989999999999999999999999999999874 456788
Q ss_pred EEecCcH
Q 030819 152 EIAKSRA 158 (171)
Q Consensus 152 ~~~~~~~ 158 (171)
.+|+-++
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8887554
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=3.5e-09 Score=77.35 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
.+..++|||+|+...++|+-|.++|-+.|+|.++.|..++ .++.+ ||||.|.++.++.-|++.+||..+.+..+++.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3456899999999999999999999999999999998887 56666 999999999999999999999999999888877
Q ss_pred ecCc
Q 030819 154 AKSR 157 (171)
Q Consensus 154 ~~~~ 157 (171)
....
T Consensus 84 r~G~ 87 (267)
T KOG4454|consen 84 RCGN 87 (267)
T ss_pred ccCC
Confidence 5543
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=6.4e-08 Score=79.36 Aligned_cols=88 Identities=28% Similarity=0.506 Sum_probs=80.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.........+||++||..++++++.++...||.+....++.+..+|-++||||.+|.+......|+..|||..+.+..|.
T Consensus 283 t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 283 TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred cCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 34556678999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEecCcH
Q 030819 151 VEIAKSRA 158 (171)
Q Consensus 151 v~~~~~~~ 158 (171)
|..+....
T Consensus 363 vq~A~~g~ 370 (500)
T KOG0120|consen 363 VQRAIVGA 370 (500)
T ss_pred eehhhccc
Confidence 98876443
No 88
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.58 E-value=3e-08 Score=80.90 Aligned_cols=88 Identities=20% Similarity=0.396 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.+++|+..|+..++..+|.++|..+|.|.+++++.|+.++.++|.+||+|.+.+++..|+. |.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 345567899999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred EEecCcHHH
Q 030819 152 EIAKSRAEL 160 (171)
Q Consensus 152 ~~~~~~~~~ 160 (171)
......+..
T Consensus 253 q~sEaeknr 261 (549)
T KOG0147|consen 253 QLSEAEKNR 261 (549)
T ss_pred cccHHHHHH
Confidence 887655544
No 89
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.47 E-value=7.9e-08 Score=74.54 Aligned_cols=84 Identities=24% Similarity=0.513 Sum_probs=75.2
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 75 QPKTRLF-VSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 75 ~~~~~l~-V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
....++| |++++.++++++|+..|..+|.|..+++..++.++.++|||++.|.+...+..++.. +...+.+..+.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445566 999999999999999999999999999999999999999999999999999999886 78889999999998
Q ss_pred ecCcHH
Q 030819 154 AKSRAE 159 (171)
Q Consensus 154 ~~~~~~ 159 (171)
..++..
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 876643
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.45 E-value=1.2e-06 Score=69.64 Aligned_cols=76 Identities=24% Similarity=0.383 Sum_probs=68.7
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 77 KTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 77 ~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
+..|.|.||... +|.+-|..+|..||+|.++.+..++. .-|+|.|.+...|+-|+++|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 577888888775 99999999999999999999987762 579999999999999999999999999999999987
Q ss_pred Cc
Q 030819 156 SR 157 (171)
Q Consensus 156 ~~ 157 (171)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 54
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.39 E-value=1.6e-06 Score=70.24 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=65.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
.......|-+.+|||++|+++|.++|+.++ |..+.+. +.+|+..|-|||+|.+.++++.|++ .+...+..+-|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 344566788999999999999999999985 7775544 4479999999999999999999999 56667777778886
Q ss_pred EecC
Q 030819 153 IAKS 156 (171)
Q Consensus 153 ~~~~ 156 (171)
-+..
T Consensus 82 ~~~~ 85 (510)
T KOG4211|consen 82 TAGG 85 (510)
T ss_pred ccCC
Confidence 6543
No 92
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=5.9e-07 Score=73.06 Aligned_cols=67 Identities=21% Similarity=0.386 Sum_probs=61.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQ-GFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 138 (171)
..-++.+|||||+||.-++.++|-.+|. -||.|..+-|-.|++-+.++|-|=|+|.+-.+-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3456789999999999999999999998 799999999999987899999999999999999999885
No 93
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.35 E-value=4.2e-06 Score=61.64 Aligned_cols=79 Identities=19% Similarity=0.439 Sum_probs=70.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD-GRVIF 150 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~-g~~i~ 150 (171)
...++...+|+.|||.+++.+.|..+|.+|....+++++... .+.|||+|.+...+..|...++|..|. .+.++
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 346778899999999999999999999999999999998754 279999999999999999999999985 88899
Q ss_pred EEEec
Q 030819 151 VEIAK 155 (171)
Q Consensus 151 v~~~~ 155 (171)
|.+++
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 88775
No 94
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.35 E-value=6.3e-07 Score=69.97 Aligned_cols=86 Identities=26% Similarity=0.352 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLV--------EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL 144 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i 144 (171)
......+|||-+|+..+++++|.++|.++|.|. .+.+-++++|+..||-|.|.|.+...|++|+.-+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 345667999999999999999999999999875 356778889999999999999999999999999999999
Q ss_pred CCeEEEEEEecCcH
Q 030819 145 DGRVIFVEIAKSRA 158 (171)
Q Consensus 145 ~g~~i~v~~~~~~~ 158 (171)
++..|+|..+..+.
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999998876554
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.34 E-value=4.1e-06 Score=52.53 Aligned_cols=70 Identities=29% Similarity=0.408 Sum_probs=47.9
Q ss_pred CeEEEcCCCCCCCHH----HHHHHHhcCCC-eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 78 TRLFVSGLSFRTSED----SLRNAFQGFGQ-LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~----~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
..|||.|||-+.... -|++++..+|. |..+ +| +.|++.|.+.+.|.+|...|+|-.+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------SG---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------eC---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999988865 45667778874 5444 22 689999999999999999999999999999999
Q ss_pred EecCc
Q 030819 153 IAKSR 157 (171)
Q Consensus 153 ~~~~~ 157 (171)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98533
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.32 E-value=1.2e-06 Score=70.83 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE-VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
.....|-+.+||+.++++||.++|+..--+.. +.+..++ .+++.|-|||.|++.+.|+.||. -|...|..+-|.|-.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeeh
Confidence 45678999999999999999999997644444 4456666 78899999999999999999998 465677777777765
Q ss_pred ec
Q 030819 154 AK 155 (171)
Q Consensus 154 ~~ 155 (171)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 54
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.30 E-value=9.5e-07 Score=65.03 Aligned_cols=64 Identities=19% Similarity=0.397 Sum_probs=54.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD 145 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~ 145 (171)
.+|||.||.++++|++|+.+|+.|.....+++-. + .|. ..+|++|++.+.|..||..|+|..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~-~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R-GGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C-CCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 5899999999999999999999998766666532 2 444 38999999999999999999998773
No 98
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.24 E-value=1.2e-05 Score=63.47 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=72.0
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 72 STCQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
....++..+.|.+|... ++.+.|..+|..||.|..+++++.+. |-|.|++.+..+.++|+..||+..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 45567889999999986 67789999999999999999987762 7899999999999999999999999999999
Q ss_pred EEEecCc
Q 030819 151 VEIAKSR 157 (171)
Q Consensus 151 v~~~~~~ 157 (171)
|+.++..
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 9988743
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.23 E-value=3.5e-06 Score=55.89 Aligned_cols=70 Identities=26% Similarity=0.472 Sum_probs=44.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-----eeCCeEEEEE
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK-----FLDGRVIFVE 152 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~-----~i~g~~i~v~ 152 (171)
..|.+.+++..++.++|++.|..||.|..|.+.... ..|+|.|.+.+.|+.|+..+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 568899999999999999999999999999886544 48999999999999999977644 4566555554
Q ss_pred E
Q 030819 153 I 153 (171)
Q Consensus 153 ~ 153 (171)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 100
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.09 E-value=5.1e-06 Score=64.92 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFG--QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
......+|||||-|.+|++||.+.+..-| ++.++++..++.+|+++|||++...+..+.++.|+.|.-..|.|..=.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34456799999999999999999988766 5677777788889999999999999999999999999999998864333
No 101
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=6.8e-07 Score=76.43 Aligned_cols=141 Identities=17% Similarity=0.195 Sum_probs=105.3
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCC-----CCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSLSTC-----QPKT 78 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 78 (171)
+++.||.++++.|....+.+.+...+.. .......+.-..+-+|.+++.+-.+..+...-.. -...
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~---------e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~ 737 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTI---------EVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKI 737 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchh---------hhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhh
Confidence 3567778888888877777776554443 1111123344567778888888877765543222 2356
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 79 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
.++|.|.|+..|.+.|+.++.++|.+.+++++..+ .|+++|.++|.|.+..++.++........+.-+.+.|..+
T Consensus 738 ~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 738 SVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred hhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 89999999999999999999999999999988888 8999999999999999999988877766665555555553
No 102
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.02 E-value=4.4e-06 Score=61.81 Aligned_cols=73 Identities=37% Similarity=0.613 Sum_probs=63.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
....+.+.|.+++..+.+.+|.+.|..+|.+..... ..+++||+|...+++.+|+..|+|..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 455678999999999999999999999999854433 237999999999999999999999999999999954
Q ss_pred e
Q 030819 154 A 154 (171)
Q Consensus 154 ~ 154 (171)
.
T Consensus 168 ~ 168 (216)
T KOG0106|consen 168 N 168 (216)
T ss_pred c
Confidence 3
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.00 E-value=2.1e-05 Score=61.30 Aligned_cols=81 Identities=22% Similarity=0.515 Sum_probs=63.0
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHHHhcCCCeEEEEEeecCCC-CCcceE--EEEEeCCHHHHHHHHHHhCCceeCCe
Q 030819 77 KTRLFVSGLSFRTSEDS----L--RNAFQGFGQLVEVNLVMDKIA-NRPRGF--AFLRYATEEESRRAIEGMHGKFLDGR 147 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~----l--~~~f~~~G~i~~~~~~~~~~~-g~~~g~--~fv~f~~~~~a~~al~~l~g~~i~g~ 147 (171)
..-+||-+|++.+..++ | .++|.+||.|..+.+-+.-.+ ....+. .||+|...++|.+||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45789999999877655 3 478999999999877543311 111232 39999999999999999999999999
Q ss_pred EEEEEEecCc
Q 030819 148 VIFVEIAKSR 157 (171)
Q Consensus 148 ~i~v~~~~~~ 157 (171)
.|+..+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987644
No 104
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.96 E-value=4.2e-05 Score=63.11 Aligned_cols=144 Identities=17% Similarity=0.275 Sum_probs=92.2
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL------------ 71 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 71 (171)
-+++||++++...++....+.+..+++. ..+.-..+..++-++++++..++.+.....+
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~l---------k~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPL---------KAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccc---------hhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 3568999999999999888888887777 4444444444455556666555554432211
Q ss_pred ----------------------------------CCCCCCCeEEEcCCC--CC-CCH-------HHHHHHHhcCCCeEEE
Q 030819 72 ----------------------------------STCQPKTRLFVSGLS--FR-TSE-------DSLRNAFQGFGQLVEV 107 (171)
Q Consensus 72 ----------------------------------~~~~~~~~l~V~nl~--~~-~~~-------~~l~~~f~~~G~i~~~ 107 (171)
....+...|.+.|+= .+ ..+ ++++.-+.+||.|..|
T Consensus 360 ~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v 439 (500)
T KOG0120|consen 360 KLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSV 439 (500)
T ss_pred eeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEE
Confidence 011111122222110 00 111 2444455789999999
Q ss_pred EEeec-C--CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 030819 108 NLVMD-K--IANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156 (171)
Q Consensus 108 ~~~~~-~--~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~ 156 (171)
.+.++ . ...-..|--||+|.+.+++++|+++|+|.++.++.|...|-..
T Consensus 440 ~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 440 EIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred ecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 88876 2 1223457789999999999999999999999999988887543
No 105
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.87 E-value=8.3e-05 Score=59.35 Aligned_cols=84 Identities=25% Similarity=0.337 Sum_probs=67.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-eE
Q 030819 70 SLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDG-RV 148 (171)
Q Consensus 70 ~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g-~~ 148 (171)
.....++..++.+.|+|.+++|++|+.+|..-|...+.... -++.+-++++.+.+.|+|..|+-.+|...+.. ..
T Consensus 407 ~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~h 482 (492)
T KOG1190|consen 407 YQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHH 482 (492)
T ss_pred ccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCce
Confidence 33456788899999999999999999999988865443222 23445699999999999999999999999854 58
Q ss_pred EEEEEecCc
Q 030819 149 IFVEIAKSR 157 (171)
Q Consensus 149 i~v~~~~~~ 157 (171)
++|.++++.
T Consensus 483 lRvSFSks~ 491 (492)
T KOG1190|consen 483 LRVSFSKST 491 (492)
T ss_pred EEEEeeccc
Confidence 999998763
No 106
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.86 E-value=9.9e-06 Score=60.77 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC--------CCcce----EEEEEeCCHHHHHHHHHHhCCce
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIA--------NRPRG----FAFLRYATEEESRRAIEGMHGKF 143 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--------g~~~g----~~fv~f~~~~~a~~al~~l~g~~ 143 (171)
....||+++||+.....-|+++|..||.|-.|.+.....+ |.+.+ -|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988766554 33322 47899999999999999999999
Q ss_pred eCCeE
Q 030819 144 LDGRV 148 (171)
Q Consensus 144 i~g~~ 148 (171)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 107
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.79 E-value=7.8e-05 Score=43.13 Aligned_cols=52 Identities=23% Similarity=0.556 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al 136 (171)
+.|-|.|.+++..+. +...|..||+|.+..+.... -+.++.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 467788999876644 56688899999998875222 48999999999999985
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00023 Score=59.02 Aligned_cols=78 Identities=23% Similarity=0.491 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCCCH------HHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-Ce
Q 030819 75 QPKTRLFVSGLSFRTSE------DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD-GR 147 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~------~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~-g~ 147 (171)
.-...|+|.|+|.--.. .-|..+|+++|+|....+..+.+ |.++||.|++|.+..+|+.|+..|||..++ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44568999999874332 35678899999999999888884 559999999999999999999999999984 45
Q ss_pred EEEEEE
Q 030819 148 VIFVEI 153 (171)
Q Consensus 148 ~i~v~~ 153 (171)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 555543
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.74 E-value=0.00017 Score=61.20 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=65.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 79 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
.|-|.|+|++++-+||.++|..|-.+-...+++-.+.|...|-|.|.|++.++|.+|...|++..|..+.|.+.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 777999999999999999999997665444444455899999999999999999999999999999999988764
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.62 E-value=0.00017 Score=62.63 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=97.1
Q ss_pred eeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccc----cCCCCCCCCCCCCCC-----CCCCC-CCCCC
Q 030819 6 FLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLR----QGRGRGACFPLACLP-----PSPHS-LSTCQ 75 (171)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~-~~~~~ 75 (171)
.||+|++.-.+++..+...|...+.+..--+-+++......+..- +...-..++...... ....- .....
T Consensus 374 TLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~kst 453 (975)
T KOG0112|consen 374 TLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPKST 453 (975)
T ss_pred hhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccccc
Confidence 478899999999999998888876664433322222211111110 000000000000000 00000 01345
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDG--RVIFVEI 153 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g--~~i~v~~ 153 (171)
..+.+|+++|..++....|...|..||.|..+.+-.. . .|++|.|.+...++.|+..+-|..+.| +.+.|.+
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg----q--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG----Q--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecccC----C--cceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 6789999999999999999999999999999776432 2 599999999999999999999999976 5788888
Q ss_pred ecCcHH
Q 030819 154 AKSRAE 159 (171)
Q Consensus 154 ~~~~~~ 159 (171)
+..-..
T Consensus 528 a~~~~~ 533 (975)
T KOG0112|consen 528 ASPPGA 533 (975)
T ss_pred ccCCCC
Confidence 875543
No 111
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.62 E-value=0.00043 Score=45.39 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=51.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEe-ec-------CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLV-MD-------KIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGR 147 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~-~~-------~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~ 147 (171)
....|.|.++|+. .-..+.+.|++||.|.+..-. .+ + ......+-.|.|.++.+|.+||. .||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~-~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYP-IPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG-----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccccccccccccc-CCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 3557889999987 556788999999999776400 00 0 01112488999999999999999 799999885
Q ss_pred -EEEEEEec
Q 030819 148 -VIFVEIAK 155 (171)
Q Consensus 148 -~i~v~~~~ 155 (171)
.+-|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 45566653
No 112
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.59 E-value=0.00074 Score=47.01 Aligned_cols=77 Identities=21% Similarity=0.342 Sum_probs=52.3
Q ss_pred CCCCCCeEEEcCCCC------CCCH---HHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 030819 73 TCQPKTRLFVSGLSF------RTSE---DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF 143 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~------~~~~---~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~ 143 (171)
-.++..||.|.-+.+ ...+ .+|.+.|..||.+.=+++..+ .-+|+|.+.++|.+|+. ++|..
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcE
Confidence 345566777775551 1222 367788899999887777643 57999999999999999 99999
Q ss_pred eCCeEEEEEEecCcH
Q 030819 144 LDGRVIFVEIAKSRA 158 (171)
Q Consensus 144 i~g~~i~v~~~~~~~ 158 (171)
++|+.|+|....+..
T Consensus 94 v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 94 VNGRTLKIRLKTPDW 108 (146)
T ss_dssp ETTEEEEEEE-----
T ss_pred ECCEEEEEEeCCccH
Confidence 999999998876543
No 113
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.43 E-value=0.00029 Score=55.97 Aligned_cols=80 Identities=24% Similarity=0.408 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQ-LVE--VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~--~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
.....|-+.+||++.+.++|.++|..|.. |.. +.++.+. .|+..|-|||+|.+.+.|.+|+...+.+...++-|.|
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 34668899999999999999999998864 444 6777766 8999999999999999999999988877666777777
Q ss_pred EEec
Q 030819 152 EIAK 155 (171)
Q Consensus 152 ~~~~ 155 (171)
-...
T Consensus 357 fp~S 360 (508)
T KOG1365|consen 357 FPCS 360 (508)
T ss_pred eecc
Confidence 5543
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00052 Score=56.33 Aligned_cols=65 Identities=22% Similarity=0.473 Sum_probs=48.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC---CCCcce---EEEEEeCCHHHHHHHHHHhC
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKI---ANRPRG---FAFLRYATEEESRRAIEGMH 140 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g---~~fv~f~~~~~a~~al~~l~ 140 (171)
.-+++||||+||++++|+.|...|..||.+. +.+..... ---++| |+|+.|+++.++..-+.+..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 3457999999999999999999999999743 34442111 122466 99999999988888776554
No 115
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.35 E-value=0.0014 Score=51.52 Aligned_cols=79 Identities=20% Similarity=0.442 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCCC----CCC-------HHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 030819 75 QPKTRLFVSGLSF----RTS-------EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF 143 (171)
Q Consensus 75 ~~~~~l~V~nl~~----~~~-------~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~ 143 (171)
...++|.+.|+=. ..+ .++|++-..+||.|..+.+.-. .+.|.+-|.|.+.++|..|+..|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3456787777521 233 2455666789999999877522 245899999999999999999999999
Q ss_pred eCCeEEEEEEecCc
Q 030819 144 LDGRVIFVEIAKSR 157 (171)
Q Consensus 144 i~g~~i~v~~~~~~ 157 (171)
+.|+.|.......+
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999998875543
No 116
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.30 E-value=0.00051 Score=55.23 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeec---CCC--CCc--------ceEEEEEeCCHHHHHH
Q 030819 68 PHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMD---KIA--NRP--------RGFAFLRYATEEESRR 134 (171)
Q Consensus 68 ~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~---~~~--g~~--------~g~~fv~f~~~~~a~~ 134 (171)
+......-++++|.+.|||.+-.-+.|..+|..+|.|+.|++... +.+ +.. +-+|+|+|...+.|.+
T Consensus 222 p~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 222 PEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred CCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence 334445568999999999999888999999999999999998765 222 212 4589999999999999
Q ss_pred HHHHhCC
Q 030819 135 AIEGMHG 141 (171)
Q Consensus 135 al~~l~g 141 (171)
|-+.++.
T Consensus 302 A~e~~~~ 308 (484)
T KOG1855|consen 302 ARELLNP 308 (484)
T ss_pred HHHhhch
Confidence 9997743
No 117
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.24 E-value=0.00054 Score=55.11 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=61.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEEecC
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK-FLDGRVIFVEIAKS 156 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~-~i~g~~i~v~~~~~ 156 (171)
..+|++||.+..+..+|+.+|...---..-.++.. -||+||.+.+..-|.+|++.++|. .+.|.++.+..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 36899999999999999999975311011112222 279999999999999999999998 48999999999888
Q ss_pred cHHHHHh
Q 030819 157 RAELRQA 163 (171)
Q Consensus 157 ~~~~~~~ 163 (171)
+..+.+.
T Consensus 76 kkqrsrk 82 (584)
T KOG2193|consen 76 KKQRSRK 82 (584)
T ss_pred HHHHhhh
Confidence 7755443
No 118
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.19 E-value=0.0035 Score=39.40 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=42.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 140 (171)
..+..+|+ +|..+...||.++|..||.| .+.++.|- -|||...+.+.+..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 34566666 99999999999999999986 45566553 79999999999999998775
No 119
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.04 E-value=0.0012 Score=55.20 Aligned_cols=78 Identities=17% Similarity=0.309 Sum_probs=63.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQG-FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL---DGRV 148 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i---~g~~ 148 (171)
....+..|||.||-.-.|.-+|+.++.. .|.|.+. |+ |+ .+..|||.|.+.++|.+...+|||..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 5567889999999999999999999995 5556665 32 32 346899999999999999999999986 6678
Q ss_pred EEEEEecC
Q 030819 149 IFVEIAKS 156 (171)
Q Consensus 149 i~v~~~~~ 156 (171)
|.+.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88888754
No 120
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.01 E-value=0.0055 Score=36.46 Aligned_cols=55 Identities=16% Similarity=0.339 Sum_probs=45.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcC---CCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGF---GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~---G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 139 (171)
...|+|.|++ +++.++|+.+|..| .....+.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999997 57888999999988 235688888775 5889999999999999764
No 121
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.94 E-value=0.0072 Score=48.13 Aligned_cols=94 Identities=13% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 030819 62 ACLPPSPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ-LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (171)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 140 (171)
+.+|..+.......++..|...|-|..+||+.|..+|..-+. -.++++..-+ +.++ .-|.++|++.++|..||..+|
T Consensus 391 Fssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-serS-ssGllEfe~~s~Aveal~~~N 468 (494)
T KOG1456|consen 391 FSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SERS-SSGLLEFENKSDAVEALMKLN 468 (494)
T ss_pred cCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-cccc-ccceeeeehHHHHHHHHHHhc
Confidence 344445555556778899999999999999999999986553 3555665554 4444 478999999999999999999
Q ss_pred CceeCCe------EEEEEEecCc
Q 030819 141 GKFLDGR------VIFVEIAKSR 157 (171)
Q Consensus 141 g~~i~g~------~i~v~~~~~~ 157 (171)
...+.+. .++++++.++
T Consensus 469 H~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 469 HYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred cccccCCCCCCCeeeeeeecccc
Confidence 9888653 5778877654
No 122
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.87 E-value=0.0031 Score=50.38 Aligned_cols=76 Identities=13% Similarity=0.228 Sum_probs=60.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIAN---RPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g---~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
...|-|.||++.++.++++.+|...|.|.++.|....+.- ...-.|||.|.+...+..|-. |.+..+-+..|.|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 3489999999999999999999999999999887644322 234589999999999888865 777777666665554
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.84 E-value=0.0054 Score=47.32 Aligned_cols=65 Identities=17% Similarity=0.347 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcce-EEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 91 EDSLRNAFQGFGQLVEVNLVMDKIANRPRG-FAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 91 ~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g-~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
++++++-.++||.|..|.+..++....... --||+|...++|.+|+--|||..+.|+.+..++..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 456777788999999988776653333322 45999999999999999999999999999988865
No 124
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.80 E-value=0.00071 Score=51.01 Aligned_cols=62 Identities=19% Similarity=0.516 Sum_probs=50.0
Q ss_pred HHHHHHh-cCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 93 SLRNAFQ-GFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 93 ~l~~~f~-~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
++..-|. +||+|+++.+..+. .-.-+|-.+|.|...++|++|++.||+.-+.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3333334 89999998665443 44467889999999999999999999999999999998764
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.77 E-value=0.0024 Score=54.43 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=67.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE-VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
..+.+..|||..||..+++.++..+|...-.|++ |.+-.-+ +++.++.|||.|..++++..|+.--+-..+..+.|+|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 4456789999999999999999999987666666 6666666 8889999999999988888887755555667778999
Q ss_pred EEecCc
Q 030819 152 EIAKSR 157 (171)
Q Consensus 152 ~~~~~~ 157 (171)
.-...+
T Consensus 509 ~si~~~ 514 (944)
T KOG4307|consen 509 DSIADY 514 (944)
T ss_pred echhhH
Confidence 765433
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.70 E-value=0.0023 Score=48.30 Aligned_cols=62 Identities=24% Similarity=0.414 Sum_probs=56.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 140 (171)
..|||.||+.-++.+.|.+-|..||+|..-.++.|. .++..+-++|.|...-.+..|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 689999999999999999999999999887777776 78888999999999999999988764
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.67 E-value=0.008 Score=48.02 Aligned_cols=60 Identities=27% Similarity=0.360 Sum_probs=49.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc----CCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQG----FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~----~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 138 (171)
-.|-+.+||+++++.++.++|.. -|..+.+.++..+ .|+..|-|||.|..+++|+.||..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH
Confidence 35667899999999999999962 2345666666665 799999999999999999999984
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.48 E-value=0.00015 Score=62.57 Aligned_cols=69 Identities=29% Similarity=0.424 Sum_probs=59.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD 145 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~ 145 (171)
..++||.||+..+.+.+|...|..+|.+..+++......++.+|+|++.|...+.+.+|+....+..+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 357999999999999999999999999888877766668999999999999999999999865544433
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.25 E-value=0.00092 Score=58.21 Aligned_cols=82 Identities=17% Similarity=0.308 Sum_probs=67.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
....+.+||+|||+..+++.+|+..|..+|.|.+|.+...+ -+.---|+|+.|.+...+..|+..+.+..|....+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 44457899999999999999999999999999999987654 23333599999999999999999999988855555655
Q ss_pred Eec
Q 030819 153 IAK 155 (171)
Q Consensus 153 ~~~ 155 (171)
+..
T Consensus 447 lG~ 449 (975)
T KOG0112|consen 447 LGQ 449 (975)
T ss_pred ccc
Confidence 553
No 130
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.11 E-value=0.041 Score=38.21 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=57.0
Q ss_pred CCCCCCCeEEEcCCCCCCCH-H---HHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 030819 72 STCQPKTRLFVSGLSFRTSE-D---SLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGR 147 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~-~---~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~ 147 (171)
..+++-.+|.|.=|..++.. + .+..-++.||+|.++.+. |+ .-|.|.|.+..+|=.|+.+++. ...|.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 34566778989877666542 3 444556789999998763 32 4799999999999999998875 66788
Q ss_pred EEEEEEec
Q 030819 148 VIFVEIAK 155 (171)
Q Consensus 148 ~i~v~~~~ 155 (171)
.+++.|-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 88888854
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.99 E-value=0.0028 Score=49.60 Aligned_cols=81 Identities=21% Similarity=0.432 Sum_probs=62.3
Q ss_pred CCeEEEcCCCCCCCHH-HHH--HHHhcCCCeEEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 030819 77 KTRLFVSGLSFRTSED-SLR--NAFQGFGQLVEVNLVMDKI----ANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVI 149 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~-~l~--~~f~~~G~i~~~~~~~~~~----~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i 149 (171)
...+||-+|+.....+ .|+ +.|.+||.|..+.+-.+.. .+-+. -++|+|...++|..||...+|..++|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 4678899999876544 343 6788999999998877651 12222 37999999999999999999999999888
Q ss_pred EEEEecCcH
Q 030819 150 FVEIAKSRA 158 (171)
Q Consensus 150 ~v~~~~~~~ 158 (171)
+..++..+-
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 877776553
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.78 E-value=0.045 Score=39.92 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=45.5
Q ss_pred CHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEEecCc
Q 030819 90 SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH--GKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 90 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~--g~~i~g~~i~v~~~~~~ 157 (171)
....|+.+|..|+.+........- +-..|.|.+.+.|.+|...|+ +..+.|..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999988777665443 467999999999999999999 99999999999998543
No 133
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.71 E-value=0.3 Score=32.58 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=49.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDG 146 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g 146 (171)
...+.+...|..++.++|..+.+.+- .|..++++++. .-++=.+++.|.+.++|..-...+||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34455555555566667765555544 47788888875 2355688999999999999999999998755
No 134
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.56 E-value=0.008 Score=43.36 Aligned_cols=54 Identities=7% Similarity=0.157 Sum_probs=46.9
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
++++|||+++|++++..++.-|+..+.+ .+..-+....+++++|++|......-
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~---------vdinLiRDk~TGKSKGFaFLcYEDQR 88 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEI---------VDINLIRDKKTGKSKGFAFLCYEDQR 88 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCce---------EEEEEEecCCCCcccceEEEEecCcc
Confidence 5789999999999999999999998888 77777888899999999987665443
No 135
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.37 E-value=0.031 Score=40.48 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=50.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhc-CCCe---EEEEEeecCCC-C-CcceEEEEEeCCHHHHHHHHHHhCCceeC---
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQG-FGQL---VEVNLVMDKIA-N-RPRGFAFLRYATEEESRRAIEGMHGKFLD--- 145 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i---~~~~~~~~~~~-g-~~~g~~fv~f~~~~~a~~al~~l~g~~i~--- 145 (171)
....+|.|++||+.+|++++.+.+.. ++.- ..+.-.....+ . ..-.-|||.|.+.+++..-...++|..+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34669999999999999998887776 6654 33321111111 1 12357899999999999999999998762
Q ss_pred C--eEEEEEEecC
Q 030819 146 G--RVIFVEIAKS 156 (171)
Q Consensus 146 g--~~i~v~~~~~ 156 (171)
| ....|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 2556666653
No 136
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=95.29 E-value=0.0022 Score=47.91 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=51.5
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL 71 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (171)
+-++|||++.|+-..+.++..|+.++.+ .+.-.+.+..++|+||++|+.+....++..+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI---------~eavvitd~~t~rskGyGfVTf~d~~aa~rA 70 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEI---------VEAVVITDKNTGRSKGYGFVTFRDAEAATRA 70 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCce---------EEEEEEeccCCccccceeeEEeecHHHHHHH
Confidence 5689999999999999999999999888 7777778888999999999999887765544
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.26 E-value=0.012 Score=48.06 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=58.4
Q ss_pred CCCeEEEcCCCCCCC-HHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 76 PKTRLFVSGLSFRTS-EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~-~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
+.+.+-+...++..+ -++|...|.+||.|..|.+-... -.|.|+|.+..+|-.|-. .++..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 344555666666644 58899999999999998874432 478999999999866655 7899999999999998
Q ss_pred cC
Q 030819 155 KS 156 (171)
Q Consensus 155 ~~ 156 (171)
.+
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 76
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=95.05 E-value=0.0023 Score=47.42 Aligned_cols=126 Identities=19% Similarity=0.215 Sum_probs=91.3
Q ss_pred eeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC---------CCCCC
Q 030819 6 FLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL---------STCQP 76 (171)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 76 (171)
.|||+|.+...++.++.+-|-..+|+-+- .+.+. +....+ ++++.+....+...+ ...+.
T Consensus 11 tl~v~n~~~~v~eelL~ElfiqaGPV~kv-------~ip~~---~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~ 79 (267)
T KOG4454|consen 11 TLLVQNMYSGVSEELLSELFIQAGPVYKV-------GIPSG---QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEE 79 (267)
T ss_pred HHHHHhhhhhhhHHHHHHHhhccCceEEE-------eCCCC---ccCCCc-eeeeecccccchhhhhhhcccchhccchh
Confidence 48999999999999999999888888321 11111 111222 556665554443322 23344
Q ss_pred CCeEEEcC----CCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 030819 77 KTRLFVSG----LSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF 143 (171)
Q Consensus 77 ~~~l~V~n----l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~ 143 (171)
..+++.|+ |...++++.+.+.|..-|.+..+++..+. .|.++-++|+.+.-..+.-.++....+..
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 56888898 88899999999999999999999999888 48888999999987777777777666554
No 139
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=95.03 E-value=0.47 Score=36.81 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=42.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCe-EEEEEeecCCCCCcceEEEEEeCCH-------HHHHHHHHHh
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQL-VEVNLVMDKIANRPRGFAFLRYATE-------EESRRAIEGM 139 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~~fv~f~~~-------~~a~~al~~l 139 (171)
+-..-||++||+.++.-.||+.-+.+-|.+ .++.+.- +.|-||..|.+. .++.+++..+
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~~~~~~~~~~~~~~~s~ 394 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRKGVPSTQDDMDKVLKSL 394 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCccCCCCCchHHHHHhccC
Confidence 344569999999999999999999987753 4444432 347899999764 4555555444
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.67 E-value=0.087 Score=44.02 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=46.4
Q ss_pred CCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CC-eEEEEEEecCcHH
Q 030819 101 FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL---DG-RVIFVEIAKSRAE 159 (171)
Q Consensus 101 ~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i---~g-~~i~v~~~~~~~~ 159 (171)
.|.-..+-+..|-.+....|||||.|.+.+++..+.++.||+.. ++ +...+.||+-++.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 45556677777877888899999999999999999999999864 43 4566777764443
No 141
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.63 E-value=0.32 Score=29.85 Aligned_cols=67 Identities=22% Similarity=0.399 Sum_probs=38.9
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhcCCC-----eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 79 RLFVS-GLSFRTSEDSLRNAFQGFGQ-----LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 79 ~l~V~-nl~~~~~~~~l~~~f~~~G~-----i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
++||. +--..++..+|..++..-+. |-.+.+.. -|+||+-.. +.+..++..|++..+.|++++|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 34443 33345788899999987654 44566643 388998864 68889999999999999999998
Q ss_pred Ee
Q 030819 153 IA 154 (171)
Q Consensus 153 ~~ 154 (171)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 142
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.63 E-value=0.041 Score=46.83 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=60.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
..-++..++||+|+...+..+-++.+...+|.|..+... -|||..|..+....+|+..++-..++|..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 355667899999999999999999999999987775432 28999999999999999999888888876655
Q ss_pred EE
Q 030819 152 EI 153 (171)
Q Consensus 152 ~~ 153 (171)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 43
No 143
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=94.52 E-value=0.013 Score=43.88 Aligned_cols=60 Identities=22% Similarity=0.422 Sum_probs=42.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEES 132 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a 132 (171)
.......+++.+++..++..++...|..+|.+....+.............++.+.....+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDA 280 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhh
Confidence 445667899999999999999999999999997776665553333434444333333333
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.50 E-value=0.33 Score=29.27 Aligned_cols=55 Identities=7% Similarity=0.228 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 88 RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 88 ~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
.++-.+++..+.+|+- .+ +..|+ +| =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999963 33 33444 33 389999999999999999999988877765
No 145
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.47 E-value=0.18 Score=39.24 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=49.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRV 148 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~ 148 (171)
..=|-|.++++.- -..|..+|.+||.|.+..... +| -+-+|.|.++.+|++||. .+|..|+|..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 3456677888854 456778999999988765431 33 488999999999999998 6999998853
No 146
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.01 E-value=0.038 Score=48.40 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=63.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEEEecC
Q 030819 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL--DGRVIFVEIAKS 156 (171)
Q Consensus 79 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i--~g~~i~v~~~~~ 156 (171)
+.++.|.+-..+-..|..++..||.+.+....++- -.+.|+|...+.|..|+++|+|.++ .|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45566777788888999999999999998877765 4899999999999999999999975 788899999885
Q ss_pred cHH
Q 030819 157 RAE 159 (171)
Q Consensus 157 ~~~ 159 (171)
-.-
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 543
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.04 E-value=0.058 Score=42.13 Aligned_cols=79 Identities=20% Similarity=0.133 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
....++|++++...+.+.+...++..+|......+........++|++.+.|...+.+..|+.......+.+..+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 4578999999999999998999999999887777777666888999999999999999999994333345555444443
No 148
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=92.56 E-value=0.024 Score=39.71 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=42.0
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPS 67 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (171)
..+|||+++.+++++..+...|...+++ .+.....+..+.++++++++.+..+..
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I---------~~v~i~~d~~tg~~kGfaFV~F~~~e~ 88 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDV---------VDAKVIVDRETGRSRGFGFVNFNDEGA 88 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCe---------EEEEEEecCCCCCcceEEEEEECCHHH
Confidence 4679999999999999999999998776 445555555566777777766665543
No 149
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.58 E-value=0.5 Score=39.89 Aligned_cols=71 Identities=10% Similarity=0.323 Sum_probs=54.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc--CCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEE
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQG--FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK--FLDGRVIFV 151 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~--~i~g~~i~v 151 (171)
..+.|.+.-||..+-.++++.+|+. +-.+.+|.+-.+. -=||+|++..+|+.|...|... +|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3467888999999999999999974 6778888876654 2489999999999998877543 466766554
Q ss_pred EE
Q 030819 152 EI 153 (171)
Q Consensus 152 ~~ 153 (171)
++
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 43
No 150
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.01 E-value=1.8 Score=35.78 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=57.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDG 146 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g 146 (171)
++..|+|-.+|-.++--||..+...+- .|.++++++|... ++=..+|.|.+.++|....+.+||..++.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 388999999999999999999888654 5889999986522 23467999999999999999999998754
No 151
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=89.51 E-value=0.12 Score=42.55 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=57.4
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC-----CCCCCCCe
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL-----STCQPKTR 79 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 79 (171)
+.+|||++.|+.+++.+...|...+++ .++.-.++..+++.+|++|+++..+..+..+ .....+++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v---------~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~ 89 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPV---------LSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRK 89 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCcc---------ceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCce
Confidence 779999999999999999999999999 8888889999999999999999887654432 23444566
Q ss_pred EEEc
Q 030819 80 LFVS 83 (171)
Q Consensus 80 l~V~ 83 (171)
|.|.
T Consensus 90 l~v~ 93 (435)
T KOG0108|consen 90 LRVN 93 (435)
T ss_pred EEee
Confidence 6653
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.39 E-value=0.11 Score=41.81 Aligned_cols=75 Identities=11% Similarity=0.048 Sum_probs=56.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....-..+++|.+|+..+-..++.++|..+|.+....+. .+...-+|-+.|....+...|+. .+|..+.-....+
T Consensus 146 kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ 220 (479)
T KOG4676|consen 146 KLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRR 220 (479)
T ss_pred hhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhh
Confidence 334445789999999999999999999999998887664 33344577899998888888888 6777654333333
No 153
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.68 E-value=0.18 Score=37.59 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=50.3
Q ss_pred eecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030819 7 LPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSLSTCQPK 77 (171)
Q Consensus 7 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (171)
||||.+.-+.++.++...|-.++.+ .+.....+....+.|+++++++.....+..+..+...
T Consensus 13 lYVGGladeVtekvLhaAFIPFGDI---------~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne 74 (298)
T KOG0111|consen 13 LYVGGLADEVTEKVLHAAFIPFGDI---------KDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE 74 (298)
T ss_pred EEeccchHHHHHHHHHhccccccch---------hhcccccchhcccccceeEEEeeccchhHHHhhcCch
Confidence 9999999999999999999888877 5555666777789999999999888776665444443
No 154
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=85.17 E-value=0.2 Score=38.99 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=47.7
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
.+.|||+-+.|+.++..|...|+..+++ ..+....++-++++++++|+++..+-
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~I---------krirlV~d~vTgkskGYAFIeye~er 154 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPI---------KRIRLVRDKVTGKSKGYAFIEYEHER 154 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcc---------eeEEEeeecccCCccceEEEEeccHH
Confidence 4679999999999999999999999999 77778888889999999998776554
No 155
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=83.89 E-value=0.25 Score=35.58 Aligned_cols=55 Identities=13% Similarity=-0.037 Sum_probs=40.2
Q ss_pred eeeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 030819 3 VLGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL 71 (171)
Q Consensus 3 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (171)
+.+++||||+..+.+...|-..|...++. .+.-.. ....+++|++|..+-.+..+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~l---------rsvWvA-----rnPPGfAFVEFed~RDA~DA 63 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPL---------RSVWVA-----RNPPGFAFVEFEDPRDAEDA 63 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcc---------eeEEEe-----ecCCCceEEeccCcccHHHH
Confidence 46899999999999999999999998866 221111 24567778777777665544
No 156
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=82.90 E-value=0.29 Score=38.63 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=47.2
Q ss_pred eeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCC
Q 030819 6 FLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHS 70 (171)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (171)
.|+|.||.+.+.+-.+...|.+.+++ .+.+.+++. +.+||++|+....+.+...
T Consensus 98 RLhVSNIPFrFRdpDL~aMF~kfG~V---------ldVEIIfNE--RGSKGFGFVTmen~~dadR 151 (376)
T KOG0125|consen 98 RLHVSNIPFRFRDPDLRAMFEKFGKV---------LDVEIIFNE--RGSKGFGFVTMENPADADR 151 (376)
T ss_pred eeEeecCCccccCccHHHHHHhhCce---------eeEEEEecc--CCCCccceEEecChhhHHH
Confidence 58999999999999999999999999 889998885 6888999998887766544
No 157
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=79.61 E-value=0.35 Score=33.13 Aligned_cols=57 Identities=11% Similarity=0.023 Sum_probs=40.2
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPH 69 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (171)
+|.+||||+.+-.+++.+.+-|.+.+++ +...--.+.-+...=++|++++.....+.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~i---------rriiMGLdr~kktpCGFCFVeyy~~~dA~ 92 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDI---------RRIIMGLDRFKKTPCGFCFVEYYSRDDAE 92 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccch---------heeEeccccCCcCccceEEEEEecchhHH
Confidence 6889999999999999999999998888 44333344333344466666665554433
No 158
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.12 E-value=6.5 Score=32.16 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=46.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQ-LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 138 (171)
-.+.|=|.++|.....+||...|+.|+. -.+|.|+.|. .+|..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3567889999999999999999999975 3566776664 899999999999999874
No 159
>PLN03213 repressor of silencing 3; Provisional
Probab=71.38 E-value=1.1 Score=37.47 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=37.1
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLP 65 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (171)
-.||||++.|+.++..|...|...+.+. +...+ ..++ |+++|+.+..+
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVk---------dVEIp--RETG--RGFAFVEMssd 58 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVD---------AVEFV--RTKG--RSFAYIDFSPS 58 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCee---------EEEEe--cccC--CceEEEEecCC
Confidence 3599999999999999999999998883 33333 1122 88999888876
No 160
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=70.79 E-value=8.1 Score=23.31 Aligned_cols=63 Identities=16% Similarity=0.278 Sum_probs=43.6
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 92 DSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 92 ~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
++|.+-|...| .|..+.-+..+.++...-.-||+.....+ ..+.++=..+++..|+|+..+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCC
Confidence 45777777777 57777777776566666778888875444 23345556788999999877654
No 161
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=67.79 E-value=8.1 Score=23.43 Aligned_cols=63 Identities=14% Similarity=0.295 Sum_probs=43.0
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 92 DSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 92 ~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
.+|.+-|...| ++.++..+..++++.+--.-+|+.....+... .|+=..++|.++.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46778888888 57888888877666666677777764432222 35556678888888876543
No 162
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=66.35 E-value=19 Score=21.34 Aligned_cols=19 Identities=16% Similarity=0.410 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCeEEEEEe
Q 030819 92 DSLRNAFQGFGQLVEVNLV 110 (171)
Q Consensus 92 ~~l~~~f~~~G~i~~~~~~ 110 (171)
.+|+++|+..|+|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999876553
No 163
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=65.50 E-value=6.8 Score=28.50 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=50.2
Q ss_pred CeEEEcCCCCCCCH-----HHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEE
Q 030819 78 TRLFVSGLSFRTSE-----DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGR-VIFV 151 (171)
Q Consensus 78 ~~l~V~nl~~~~~~-----~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~-~i~v 151 (171)
.++.+.+++..+-. .....+|..|.+.....+.+.. +.--|.|.+.+.|.+|...+++..+.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 44566666655332 2344566666655444444322 4667789999999999999999999887 7888
Q ss_pred EEecCc
Q 030819 152 EIAKSR 157 (171)
Q Consensus 152 ~~~~~~ 157 (171)
-++.+.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 777654
No 164
>PLN03120 nucleic acid binding protein; Provisional
Probab=65.48 E-value=1.3 Score=34.15 Aligned_cols=30 Identities=3% Similarity=-0.025 Sum_probs=26.8
Q ss_pred ceeeeeecCceeecccchhhcccCCcCCCC
Q 030819 2 AVLGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 2 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+...+||+|+.++.++..+.+.|...+.+
T Consensus 2 ~~~rtVfVgNLs~~tTE~dLrefFS~~G~I 31 (260)
T PLN03120 2 MQVRTVKVSNVSLKATERDIKEFFSFSGDI 31 (260)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 345679999999999999999999998887
No 165
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.69 E-value=49 Score=28.59 Aligned_cols=80 Identities=15% Similarity=0.264 Sum_probs=58.9
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcC----CCeEEEEEeecC----------CCCC---------------------
Q 030819 74 CQPKTRLFVSGLSFR-TSEDSLRNAFQGF----GQLVEVNLVMDK----------IANR--------------------- 117 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~-~~~~~l~~~f~~~----G~i~~~~~~~~~----------~~g~--------------------- 117 (171)
...++.|-|-|+.|. +...+|..+|..| |.|.+|.|.... -.|-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456788999999997 7788999999865 578877654221 0111
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEE
Q 030819 118 ----------------PRGFAFLRYATEEESRRAIEGMHGKFLD--GRVIFVEI 153 (171)
Q Consensus 118 ----------------~~g~~fv~f~~~~~a~~al~~l~g~~i~--g~~i~v~~ 153 (171)
..=||.|+|.+.+.|.+....+.|..+. +..|.++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1127899999999999999999999884 45566655
No 166
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=64.55 E-value=0.24 Score=40.39 Aligned_cols=76 Identities=14% Similarity=0.280 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLV-MDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~-~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
.++.+-+.|+|+...|+.|..+...||.+..|..+ .+.++ -..-|+|...+.+..||..|+|..+....+++.|-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 45678899999999999999999999999887543 23221 23456788899999999999999999988888875
Q ss_pred c
Q 030819 155 K 155 (171)
Q Consensus 155 ~ 155 (171)
.
T Consensus 155 P 155 (584)
T KOG2193|consen 155 P 155 (584)
T ss_pred c
Confidence 4
No 167
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.17 E-value=21 Score=23.99 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=27.0
Q ss_pred CHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHH
Q 030819 90 SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYA-TEEESRRAIE 137 (171)
Q Consensus 90 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~-~~~~a~~al~ 137 (171)
+.+.|.+.|..|..++ +....++ . -+.|++.|.|. +-.....|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~-~-gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK-Q-GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET-T-EEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC-C-CCcEEEEEEECCChHHHHHHHH
Confidence 4578999999998875 4455555 2 46699999997 5555555655
No 168
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.64 E-value=1.2 Score=37.62 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=53.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGR 147 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~ 147 (171)
.+++|+.|++++++-.+|..+...+--+..+.+-.+........+++|.|.-.-...-|+.+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 46899999999999999999999886666655443332333456789999877777778888888766443
No 169
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=57.45 E-value=46 Score=20.98 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 030819 79 RLFVSGLSFRTSEDSLRNAFQG-FG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137 (171)
Q Consensus 79 ~l~V~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 137 (171)
.-|+.-.+...+..+++..++. || .|..+....-+ .+. -=|+|.+.....|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~~--KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KGE--KKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCc--EEEEEEeCCCCcHHHHHH
Confidence 3556667889999999999986 66 46677655444 232 358999988777766543
No 170
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=52.70 E-value=18 Score=28.29 Aligned_cols=85 Identities=24% Similarity=0.499 Sum_probs=52.6
Q ss_pred CCCCCeEEEcCCCCC------------CCHHHHHHHHhcCCCeEEEEEee-----cCCCCCcceEEEEEeC---------
Q 030819 74 CQPKTRLFVSGLSFR------------TSEDSLRNAFQGFGQLVEVNLVM-----DKIANRPRGFAFLRYA--------- 127 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~------------~~~~~l~~~f~~~G~i~~~~~~~-----~~~~g~~~g~~fv~f~--------- 127 (171)
.....+||+.+||-. -+++-|+..|..||.|..+.+.. ...+|+..|..|-.|.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 334457888777742 45788999999999998876542 2235555444444332
Q ss_pred -----CHHHHHHHHHHhCCcee----CC----eEEEEEEecCcH
Q 030819 128 -----TEEESRRAIEGMHGKFL----DG----RVIFVEIAKSRA 158 (171)
Q Consensus 128 -----~~~~a~~al~~l~g~~i----~g----~~i~v~~~~~~~ 158 (171)
.-.....||..|.|..+ .| ..++|.+.+++.
T Consensus 226 yvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 12344557777777654 22 257787777653
No 171
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.34 E-value=2.9 Score=34.48 Aligned_cols=79 Identities=5% Similarity=-0.157 Sum_probs=58.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
...|+..++..++++++.-+|.-||-|..+.+.+--+.|...-.+|+.-.. ..+..++..+--..+.|..+++..+...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 345677888899999999999999999988776655455566677877653 4556666666666677777777776543
No 172
>PLN03121 nucleic acid binding protein; Provisional
Probab=49.73 E-value=3.9 Score=31.14 Aligned_cols=51 Identities=6% Similarity=-0.081 Sum_probs=37.3
Q ss_pred eeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCC
Q 030819 6 FLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSP 68 (171)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (171)
.+||+|+.+..++..+.+.|+..+.+ .+.....+ ++.++++|+.|..+...
T Consensus 7 TV~V~NLS~~tTE~dLrefFS~~G~I---------~~V~I~~D---~et~gfAfVtF~d~~aa 57 (243)
T PLN03121 7 TAEVTNLSPKATEKDVYDFFSHCGAI---------EHVEIIRS---GEYACTAYVTFKDAYAL 57 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCe---------EEEEEecC---CCcceEEEEEECCHHHH
Confidence 39999999999999999999999888 33332222 34446777777766543
No 173
>PRK11901 hypothetical protein; Reviewed
Probab=48.78 E-value=50 Score=26.42 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=42.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEE--EeCCHHHHHHHHHHhCCcee
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFL--RYATEEESRRAIEGMHGKFL 144 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv--~f~~~~~a~~al~~l~g~~i 144 (171)
....+|-|..+ ..++.|..+..+++ +..+.+..-..+|+. +|..| .|.+.++|..|+..|.....
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 44456666554 45778888888775 344555544435554 45544 78899999999999875443
No 174
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=48.50 E-value=64 Score=19.96 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=38.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 030819 79 RLFVSGLSFRTSEDSLRNAFQG-FG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136 (171)
Q Consensus 79 ~l~V~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al 136 (171)
.-|+...+...+..+|+..++. || .|..+....-+ .+. -=|||.+...+.|...-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~~--KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RGE--KKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCc--eEEEEEECCCCcHHHHH
Confidence 4567778899999999988886 55 46666555444 222 35899998776666543
No 175
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=48.07 E-value=12 Score=23.88 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHH
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAF 98 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f 98 (171)
.....++|-|.|||....+++|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 34557899999999999999998654
No 176
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=47.93 E-value=6 Score=30.20 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=39.7
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACL 64 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (171)
+.+=|-|+.-++.+..|..-|..++++ .+..-..+..++.++|++|+.+..
T Consensus 190 ~tvRvtNLsed~~E~dL~eLf~~fg~i---------~rvylardK~TG~~kGFAFVtF~s 240 (270)
T KOG0122|consen 190 ATVRVTNLSEDMREDDLEELFRPFGPI---------TRVYLARDKETGLSKGFAFVTFES 240 (270)
T ss_pred ceeEEecCccccChhHHHHHhhccCcc---------ceeEEEEccccCcccceEEEEEec
Confidence 446678888899999998888888888 556666777888999998865543
No 177
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=46.67 E-value=6.1 Score=29.30 Aligned_cols=76 Identities=11% Similarity=0.039 Sum_probs=52.9
Q ss_pred eeeeecCceeecccchhhcccCCcCC-CCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCC-----CC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHS-PAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSLSTCQ-----PK 77 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 77 (171)
.+.+|+..+.+...+..+...+.... +. ..+.-..+.+++.+++++|++|..+..+.-..... -.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v---------~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e 119 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTV---------TRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME 119 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCee---------EEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh
Confidence 45677788888877777777766652 22 44444577889999999999999887655443333 24
Q ss_pred CeEEEcCCCCC
Q 030819 78 TRLFVSGLSFR 88 (171)
Q Consensus 78 ~~l~V~nl~~~ 88 (171)
+.|.|.=+|++
T Consensus 120 ~lL~c~vmppe 130 (214)
T KOG4208|consen 120 HLLECHVMPPE 130 (214)
T ss_pred heeeeEEeCch
Confidence 56777778887
No 178
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=44.13 E-value=48 Score=26.10 Aligned_cols=80 Identities=11% Similarity=0.182 Sum_probs=53.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecC-------CCCCcceEEEEEeCCHHHHHHH----HHHhCCc--
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDK-------IANRPRGFAFLRYATEEESRRA----IEGMHGK-- 142 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-------~~g~~~g~~fv~f~~~~~a~~a----l~~l~g~-- 142 (171)
..+.|...|+..+++--.+..-|-+||+|+.+.++.+. +..+......+.|-+.+.|-.- ++.|...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35678889999888877788888999999999988665 1122334678888887765432 2223222
Q ss_pred eeCCeEEEEEEec
Q 030819 143 FLDGRVIFVEIAK 155 (171)
Q Consensus 143 ~i~g~~i~v~~~~ 155 (171)
.+....|.+.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3566666666543
No 179
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=43.48 E-value=69 Score=20.30 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=29.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeC
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYA 127 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~ 127 (171)
..-||||+++..+-+.-...+.+..++-.-+-+..+. + ..||.|-...
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n--eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N--EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C--CCCEEEEEeC
Confidence 4469999999988877555555544433333222322 2 4589998774
No 180
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.68 E-value=76 Score=26.93 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=42.7
Q ss_pred EEcCCCCCCC---HHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 030819 81 FVSGLSFRTS---EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVI 149 (171)
Q Consensus 81 ~V~nl~~~~~---~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i 149 (171)
+||||+.-.. ...+..+=++||+|-.+++-.. -.|.-.+.+.|+.|+. -|+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 4677766433 3556666679999998887332 3788889999999998 47777777664
No 181
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=36.32 E-value=31 Score=18.05 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHhcCC
Q 030819 87 FRTSEDSLRNAFQGFG 102 (171)
Q Consensus 87 ~~~~~~~l~~~f~~~G 102 (171)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3688999999998764
No 182
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.03 E-value=22 Score=29.22 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=49.7
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHHHhc--CCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 030819 76 PKTRLFVSGLSFRTSED--------SLRNAFQG--FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~--------~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 137 (171)
..+.+|+.+.......+ ++...|.. .+.+..+.+.++.....++|.-|++|...+.+++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34578888887776655 89999988 6677888887777677788999999999999999863
No 183
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=32.90 E-value=2.7e+02 Score=23.66 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=41.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh----cCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQ----GFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~----~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 140 (171)
+..+-++.-..+.+..+|..+|. .+|-|.++.+...+. .......++.|.+.+++..++..+.
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 34454543333334457777775 567788887766653 3344677889999999998887754
No 184
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=32.26 E-value=96 Score=20.17 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=28.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCC
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYAT 128 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~ 128 (171)
..-||||+++..+-+.--..+-+.+++- .+.++... +... ||.|-.+.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~~-~~eq-G~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWAT-NTES-GFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEcC-CCCC-CcEEEecCC
Confidence 4469999999887765444444444432 22222222 2222 899988764
No 185
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=31.36 E-value=1.2e+02 Score=19.06 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=20.6
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCC
Q 030819 103 QLVEVNLVMDKIANRPRGFAFLRYAT 128 (171)
Q Consensus 103 ~i~~~~~~~~~~~g~~~g~~fv~f~~ 128 (171)
+|.++++..-...|+-+|+|-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46778877766668999999999986
No 186
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=30.56 E-value=2.3e+02 Score=23.64 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=36.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH-HHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCH
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLR-NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATE 129 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~-~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~ 129 (171)
-.-++++|||.+-=+...+++.. ++.++-|.+..+.+-..+.--.-.--.||.|..+
T Consensus 396 LSLDGKRLYVt~SLys~WD~QFYPE~v~~G~~miqidvdt~~g~~~lN~~flvDf~~e 453 (476)
T KOG0918|consen 396 LSLDGKRLYVTNSLYSAWDRQFYPELVSKGSHMIQIDVDTVKGGLSLNPDFLVDFGKE 453 (476)
T ss_pred eccCCcEEEEEchhhhhhHhhhCHHHHhcCceEEEEeeeccCCceeeCccceEEccCC
Confidence 44578999999877766655554 6667777888887744431111112358899874
No 187
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=28.94 E-value=1.3e+02 Score=19.48 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=19.9
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCC
Q 030819 103 QLVEVNLVMDKIANRPRGFAFLRYAT 128 (171)
Q Consensus 103 ~i~~~~~~~~~~~g~~~g~~fv~f~~ 128 (171)
+|.++++..-...|+-+++|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46777776665568889999999976
No 188
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.92 E-value=80 Score=19.63 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=21.7
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCce
Q 030819 118 PRGFAFLRYATEEESRRAIEGMHGKF 143 (171)
Q Consensus 118 ~~g~~fv~f~~~~~a~~al~~l~g~~ 143 (171)
.+||-||+=.+..++..|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 57999999999999999988776554
No 189
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=27.55 E-value=2e+02 Score=21.09 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=37.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHH
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQ-GFGQLVEVNLVMDKIAN--RPRGFAFLRYATEEESRRAIEG 138 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g--~~~g~~fv~f~~~~~a~~al~~ 138 (171)
.+++|.. .++++|..+.. .-|.+..+.+-... .+ ..+|--||+|...+.+.+.++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3566653 56665555443 22777777665443 33 5678999999999999987763
No 190
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=26.77 E-value=1.1e+02 Score=16.89 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCC
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQ 103 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~ 103 (171)
..+++.+........+|.+++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46778877767888999999999986
No 191
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=26.15 E-value=18 Score=29.10 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 030819 92 DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (171)
Q Consensus 92 ~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~ 142 (171)
..+.+++.+.|.|..-.+.+-. +.|.||+..-..++++++++.|.+.
T Consensus 276 p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 4567777788877654443322 2378999999999999999998865
No 192
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=25.81 E-value=67 Score=24.55 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=29.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEV 107 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~ 107 (171)
......++|+-|+|...+++.|.++....|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 44556799999999999999999999998865544
No 193
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=25.75 E-value=15 Score=27.50 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=62.2
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEc
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSLSTCQPKTRLFVS 83 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 83 (171)
|--|-|-|+-|.-+.+.|..-|++.+.+ -++....+..+...++++|+.|...-.+..+....++..|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~v---------gDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l--- 80 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRV---------GDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--- 80 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcc---------cceecccccccccccceeEEEeeecchHHHHHHhhcceee---
Confidence 4457889999999999999999998888 6666667777888999999999887776665544444433
Q ss_pred CCCCCCCHHHHHHHHhcCCCeE
Q 030819 84 GLSFRTSEDSLRNAFQGFGQLV 105 (171)
Q Consensus 84 nl~~~~~~~~l~~~f~~~G~i~ 105 (171)
.--+|+-.|+.||...
T Consensus 81 ------dgRelrVq~arygr~~ 96 (256)
T KOG4207|consen 81 ------DGRELRVQMARYGRPS 96 (256)
T ss_pred ------ccceeeehhhhcCCCc
Confidence 2234555688888653
No 194
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.05 E-value=1.1e+02 Score=23.77 Aligned_cols=28 Identities=14% Similarity=0.091 Sum_probs=22.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCe
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQL 104 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i 104 (171)
.....|+|||++++-.-+..++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 4467799999999999999888765444
No 195
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=22.27 E-value=3.7e+02 Score=22.04 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=39.9
Q ss_pred CCeEEEcC-CCCCCCHHHHHHHHhc----CCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 030819 77 KTRLFVSG-LSFRTSEDSLRNAFQG----FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (171)
Q Consensus 77 ~~~l~V~n-l~~~~~~~~l~~~f~~----~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 139 (171)
+..+.++. .+++....+|..+|.. +|-|.++.+...+. ...+....+.|.+.+++..++..+
T Consensus 131 G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~-p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 131 GEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPK-PENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecC-CCccEEEEEECCCHHHHHHHHHHH
Confidence 44444442 3334445567778753 67788887766653 334456778899999988887554
No 196
>PF15063 TC1: Thyroid cancer protein 1
Probab=21.24 E-value=62 Score=20.00 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=21.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCe
Q 030819 79 RLFVSGLSFRTSEDSLRNAFQGFGQL 104 (171)
Q Consensus 79 ~l~V~nl~~~~~~~~l~~~f~~~G~i 104 (171)
+--+.||=.+++..+|..+|..-|+.
T Consensus 27 KkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 27 KKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhhccCHHHHHHHHHHccch
Confidence 33456777899999999999999964
No 197
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.92 E-value=1.7e+02 Score=23.97 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=44.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQ-LVEVNLVMDKIA--NRPRGFAFLRYATEEESRRAIEGMHGKFL 144 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~--g~~~g~~fv~f~~~~~a~~al~~l~g~~i 144 (171)
-..|.|.+||+..++.+|.+....+-. +-...+.....+ ..-.+.++|.|...++...-...++|..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 457889999999999988887776532 111122211101 11246789999999987777777777764
No 198
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.55 E-value=1.6e+02 Score=17.50 Aligned_cols=25 Identities=4% Similarity=0.210 Sum_probs=19.7
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCcee
Q 030819 120 GFAFLRYATEEESRRAIEGMHGKFL 144 (171)
Q Consensus 120 g~~fv~f~~~~~a~~al~~l~g~~i 144 (171)
.+.++.|.+...|-+|-..|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 3689999999999888887765543
No 199
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=20.02 E-value=66 Score=24.92 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=52.2
Q ss_pred CCeEEEcCCCCCCCHHH-H--HHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 77 KTRLFVSGLSFRTSEDS-L--RNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~-l--~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
-...+++++-..+..+- | ...|..|-.+....++.+. -+..++++|+.|........+-..-++.++....|++.-
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 34556666655555443 3 6778777777777777777 677889999999987777777665566666666655543
Done!