Query 030819
Match_columns 171
No_of_seqs 176 out of 2008
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2E-24 6.8E-29 141.6 12.2 82 75-156 17-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 1.4E-23 4.9E-28 140.1 14.0 90 74-163 3-92 (110)
3 4f02_A Polyadenylate-binding p 99.9 1.9E-25 6.3E-30 165.3 3.0 150 4-164 15-188 (213)
4 2cjk_A Nuclear polyadenylated 99.9 1E-24 3.5E-29 154.7 1.0 144 4-157 3-166 (167)
5 1l3k_A Heterogeneous nuclear r 99.9 7.2E-24 2.5E-28 154.0 5.1 149 4-162 13-188 (196)
6 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.6E-22 8.9E-27 128.1 11.6 83 75-157 4-86 (87)
7 2la6_A RNA-binding protein FUS 99.9 3.9E-22 1.3E-26 130.4 12.1 85 71-155 7-99 (99)
8 3md3_A Nuclear and cytoplasmic 99.9 2.1E-23 7.2E-28 147.4 6.3 141 6-156 2-166 (166)
9 3md1_A Nuclear and cytoplasmic 99.9 5.3E-22 1.8E-26 125.5 12.0 82 77-158 1-82 (83)
10 2cpz_A CUG triplet repeat RNA- 99.9 7.1E-22 2.4E-26 132.6 12.9 89 71-159 19-107 (115)
11 2cqc_A Arginine/serine-rich sp 99.9 8E-22 2.7E-26 127.8 12.6 86 71-156 9-94 (95)
12 2e5h_A Zinc finger CCHC-type a 99.9 8.9E-22 3E-26 127.4 12.8 85 71-155 10-94 (94)
13 2lkz_A RNA-binding protein 5; 99.9 1.5E-22 5E-27 131.7 9.0 83 74-156 6-94 (95)
14 2lxi_A RNA-binding protein 10; 99.9 4.1E-23 1.4E-27 133.3 6.3 82 77-158 1-84 (91)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5E-22 1.7E-26 126.2 10.8 82 74-155 4-85 (85)
16 2qfj_A FBP-interacting repress 99.9 1.6E-23 5.5E-28 154.3 4.0 146 4-158 28-206 (216)
17 4f25_A Polyadenylate-binding p 99.9 3.6E-22 1.2E-26 134.2 10.3 84 76-161 4-87 (115)
18 2dgo_A Cytotoxic granule-assoc 99.9 4.5E-22 1.5E-26 133.5 10.8 89 72-160 10-98 (115)
19 1x5u_A Splicing factor 3B subu 99.9 7.5E-22 2.6E-26 130.3 11.5 89 71-159 9-97 (105)
20 2dnz_A Probable RNA-binding pr 99.9 8.2E-22 2.8E-26 127.8 11.4 85 75-159 3-87 (95)
21 2x1f_A MRNA 3'-END-processing 99.9 9E-22 3.1E-26 128.0 11.6 86 76-161 1-86 (96)
22 2cq0_A Eukaryotic translation 99.9 1.1E-21 3.6E-26 129.2 12.0 86 73-158 11-96 (103)
23 2jrs_A RNA-binding protein 39; 99.9 5.2E-22 1.8E-26 132.0 10.6 88 71-158 20-107 (108)
24 1whw_A Hypothetical protein ri 99.9 1.1E-21 3.8E-26 128.2 11.6 88 73-160 4-91 (99)
25 2do4_A Squamous cell carcinoma 99.9 2.9E-21 9.9E-26 126.4 13.5 85 73-158 13-97 (100)
26 2dgs_A DAZ-associated protein 99.9 1.4E-21 4.8E-26 127.7 11.9 86 73-159 6-91 (99)
27 1b7f_A Protein (SXL-lethal pro 99.9 1.5E-22 5.1E-27 143.5 7.8 142 4-154 3-168 (168)
28 1p27_B RNA-binding protein 8A; 99.9 6.6E-22 2.3E-26 130.8 10.4 86 73-158 19-104 (106)
29 3ns6_A Eukaryotic translation 99.9 1.5E-22 5.1E-27 132.8 7.1 87 75-161 4-97 (100)
30 2cqb_A Peptidyl-prolyl CIS-tra 99.9 9.2E-22 3.1E-26 129.2 10.6 87 73-159 8-94 (102)
31 2dnm_A SRP46 splicing factor; 99.9 8.3E-22 2.8E-26 129.7 10.2 86 73-158 9-94 (103)
32 2cph_A RNA binding motif prote 99.9 2E-21 6.7E-26 128.6 11.8 89 71-159 9-99 (107)
33 2g4b_A Splicing factor U2AF 65 99.9 2.1E-22 7E-27 143.4 7.4 147 4-154 4-171 (172)
34 1oo0_B CG8781-PA, drosophila Y 99.9 6.5E-22 2.2E-26 131.7 9.1 86 73-158 22-107 (110)
35 1x4h_A RNA-binding protein 28; 99.9 3.1E-21 1.1E-25 128.5 12.4 87 73-159 11-103 (111)
36 3p5t_L Cleavage and polyadenyl 99.9 2.1E-22 7.2E-27 129.6 6.4 83 78-160 2-86 (90)
37 2yh0_A Splicing factor U2AF 65 99.9 1.2E-22 4.1E-27 147.7 5.9 85 74-158 111-195 (198)
38 2khc_A Testis-specific RNP-typ 99.9 2.6E-21 8.8E-26 130.3 12.0 84 72-155 35-118 (118)
39 1x5t_A Splicing factor 3B subu 99.9 1.2E-21 4.1E-26 127.3 10.0 85 75-159 3-88 (96)
40 3n9u_C Cleavage and polyadenyl 99.9 1.8E-21 6.2E-26 137.5 11.6 85 75-159 53-139 (156)
41 2dnh_A Bruno-like 5, RNA bindi 99.9 5E-21 1.7E-25 126.3 12.8 86 73-159 11-99 (105)
42 3ulh_A THO complex subunit 4; 99.9 4.3E-21 1.5E-25 127.0 12.5 84 72-156 24-107 (107)
43 1x5s_A Cold-inducible RNA-bind 99.9 1.5E-21 5E-26 128.2 10.1 87 73-159 8-94 (102)
44 2div_A TRNA selenocysteine ass 99.9 1.8E-21 6E-26 127.2 10.3 86 73-158 5-95 (99)
45 2cq4_A RNA binding motif prote 99.9 1.3E-21 4.6E-26 131.0 9.8 86 74-160 22-107 (114)
46 1u6f_A Tcubp1, RNA-binding pro 99.9 3.3E-21 1.1E-25 133.4 12.0 89 71-159 36-124 (139)
47 2dgp_A Bruno-like 4, RNA bindi 99.9 1.4E-21 4.9E-26 129.2 9.6 88 72-159 8-98 (106)
48 3s7r_A Heterogeneous nuclear r 99.9 5.6E-21 1.9E-25 121.9 12.0 81 73-154 7-87 (87)
49 2d9p_A Polyadenylate-binding p 99.9 4.5E-21 1.5E-25 126.2 11.8 87 71-159 9-95 (103)
50 1fxl_A Paraneoplastic encephal 99.9 2.6E-22 8.9E-27 141.9 6.2 141 5-154 3-167 (167)
51 2cpe_A RNA-binding protein EWS 99.9 3.4E-21 1.2E-25 128.8 11.4 88 72-159 10-105 (113)
52 1p1t_A Cleavage stimulation fa 99.9 8.5E-22 2.9E-26 129.8 8.2 90 75-164 6-95 (104)
53 2cpf_A RNA binding motif prote 99.9 2.4E-21 8.4E-26 126.3 10.3 84 75-158 3-89 (98)
54 2dng_A Eukaryotic translation 99.9 7.3E-21 2.5E-25 125.2 12.6 85 73-159 11-95 (103)
55 3nmr_A Cugbp ELAV-like family 99.9 8.4E-23 2.9E-27 145.6 3.0 142 4-155 3-175 (175)
56 2ywk_A Putative RNA-binding pr 99.9 4.1E-21 1.4E-25 124.5 10.5 83 73-156 12-94 (95)
57 2kxn_B Transformer-2 protein h 99.9 2.2E-21 7.5E-26 132.9 9.5 87 72-158 41-127 (129)
58 1s79_A Lupus LA protein; RRM, 99.9 1.8E-21 6.2E-26 128.4 8.6 87 74-162 8-94 (103)
59 2cqp_A RNA-binding protein 12; 99.9 3.7E-21 1.3E-25 125.4 9.9 85 73-157 11-95 (98)
60 1wi8_A EIF-4B, eukaryotic tran 99.9 8.4E-21 2.9E-25 125.1 11.6 85 73-159 11-96 (104)
61 4a8x_A RNA-binding protein wit 99.9 5.1E-21 1.8E-25 122.2 10.3 84 75-158 2-86 (88)
62 2j76_E EIF-4B, EIF4B, eukaryot 99.9 7.6E-22 2.6E-26 129.4 6.5 88 69-158 11-99 (100)
63 2cqd_A RNA-binding region cont 99.9 1.1E-20 3.7E-25 127.0 12.2 86 71-157 11-96 (116)
64 3ucg_A Polyadenylate-binding p 99.9 6.4E-21 2.2E-25 122.1 10.6 80 77-157 6-85 (89)
65 2rs2_A Musashi-1, RNA-binding 99.9 5.7E-21 2E-25 127.2 10.5 87 71-158 19-105 (109)
66 2fy1_A RNA-binding motif prote 99.9 5.5E-21 1.9E-25 128.6 10.4 84 74-158 4-87 (116)
67 3ex7_B RNA-binding protein 8A; 99.9 3.7E-21 1.3E-25 131.0 9.7 85 73-157 18-102 (126)
68 2cq3_A RNA-binding protein 9; 99.9 2.8E-20 9.5E-25 122.4 13.5 86 71-158 9-94 (103)
69 1rk8_A CG8781-PA, CG8781-PA pr 99.9 6.5E-21 2.2E-25 135.7 11.3 90 73-162 68-157 (165)
70 2do0_A HnRNP M, heterogeneous 99.8 2.6E-20 8.9E-25 124.6 13.5 84 73-157 11-94 (114)
71 2cpy_A RNA-binding protein 12; 99.8 8E-21 2.7E-25 127.4 10.9 88 73-162 11-99 (114)
72 2kt5_A RNA and export factor-b 99.8 3.7E-20 1.3E-24 125.8 14.4 85 73-158 31-115 (124)
73 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.1E-20 7.1E-25 123.0 12.7 86 72-159 10-95 (103)
74 2dh8_A DAZ-associated protein 99.8 5.9E-21 2E-25 126.0 9.7 88 72-160 11-98 (105)
75 2dgx_A KIAA0430 protein; RRM d 99.8 1.1E-20 3.9E-25 122.9 10.8 82 74-158 6-91 (96)
76 3smz_A Protein raver-1, ribonu 99.8 4.5E-22 1.6E-26 152.6 4.6 151 5-165 96-272 (284)
77 2dhg_A TRNA selenocysteine ass 99.8 5.9E-21 2E-25 125.8 9.3 87 73-160 5-93 (104)
78 1x4e_A RNA binding motif, sing 99.8 9.9E-22 3.4E-26 124.9 5.3 83 74-156 2-84 (85)
79 2err_A Ataxin-2-binding protei 99.8 9.1E-21 3.1E-25 126.2 10.1 85 71-157 23-107 (109)
80 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.4E-20 8.3E-25 131.5 12.8 86 73-158 35-120 (156)
81 2dgv_A HnRNP M, heterogeneous 99.8 1.6E-20 5.3E-25 121.0 10.7 84 73-158 4-87 (92)
82 2cqg_A TDP-43, TAR DNA-binding 99.8 4.3E-20 1.5E-24 121.4 12.9 86 72-159 10-95 (103)
83 2m2b_A RNA-binding protein 10; 99.8 2.8E-21 9.6E-26 132.7 7.4 85 73-158 19-109 (131)
84 2ek1_A RNA-binding protein 12; 99.8 5E-21 1.7E-25 124.1 8.0 83 74-156 12-94 (95)
85 2dgw_A Probable RNA-binding pr 99.8 4.6E-20 1.6E-24 118.7 12.5 83 73-158 6-88 (91)
86 1x4a_A Splicing factor, argini 99.8 6.5E-20 2.2E-24 121.8 13.5 84 72-158 17-100 (109)
87 1x5o_A RNA binding motif, sing 99.8 6.4E-20 2.2E-24 122.7 13.4 84 73-157 21-112 (114)
88 2a3j_A U1 small nuclear ribonu 99.8 1.1E-20 3.7E-25 129.1 9.7 89 73-164 25-117 (127)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.9E-20 1E-24 128.5 12.0 83 72-154 58-140 (140)
90 2kn4_A Immunoglobulin G-bindin 99.8 2.2E-20 7.5E-25 131.8 11.4 86 73-158 66-151 (158)
91 1x4b_A Heterogeneous nuclear r 99.8 1.4E-20 4.7E-25 126.4 9.8 85 74-159 24-108 (116)
92 2db1_A Heterogeneous nuclear r 99.8 3.5E-20 1.2E-24 125.0 11.7 86 73-160 13-101 (118)
93 1sjq_A Polypyrimidine tract-bi 99.8 1E-20 3.6E-25 124.6 8.7 81 73-159 12-94 (105)
94 2mss_A Protein (musashi1); RNA 99.8 4.8E-21 1.6E-25 119.0 6.6 75 79-154 1-75 (75)
95 1wel_A RNA-binding protein 12; 99.8 1.1E-20 3.9E-25 128.4 9.1 86 73-159 21-106 (124)
96 3r27_A HnRNP L, heterogeneous 99.8 3E-20 1E-24 121.3 10.5 80 72-157 16-97 (100)
97 1fje_B Nucleolin RBD12, protei 99.8 4.4E-22 1.5E-26 142.2 1.4 139 4-157 13-174 (175)
98 3q2s_C Cleavage and polyadenyl 99.8 1.8E-20 6.2E-25 140.1 10.1 85 76-160 67-153 (229)
99 2dis_A Unnamed protein product 99.8 1.7E-20 5.7E-25 124.6 8.8 87 74-160 5-95 (109)
100 2cq1_A PTB-like protein L; RRM 99.8 9.6E-20 3.3E-24 119.6 12.3 82 71-158 9-92 (101)
101 2cpi_A CCR4-NOT transcription 99.8 2.7E-20 9.2E-25 124.2 9.9 85 74-158 12-102 (111)
102 2jwn_A Embryonic polyadenylate 99.8 3.7E-20 1.3E-24 125.7 10.5 82 76-158 35-116 (124)
103 1uaw_A Mouse-musashi-1; RNP-ty 99.8 9E-21 3.1E-25 118.2 6.2 76 78-154 1-76 (77)
104 2jvo_A Nucleolar protein 3; nu 99.8 4.3E-20 1.5E-24 122.7 9.8 83 70-160 24-106 (108)
105 2nlw_A Eukaryotic translation 99.8 2.7E-20 9.1E-25 123.1 8.8 83 73-157 11-100 (105)
106 2fc9_A NCL protein; structure 99.8 1.1E-19 3.7E-24 119.1 11.5 82 73-158 11-92 (101)
107 2xnq_A Nuclear polyadenylated 99.8 9.2E-20 3.2E-24 118.8 10.9 82 69-158 14-96 (97)
108 1wex_A Hypothetical protein (r 99.8 8.7E-20 3E-24 120.4 10.7 81 73-159 11-93 (104)
109 1wg5_A Heterogeneous nuclear r 99.8 8.3E-20 2.8E-24 120.5 10.6 84 73-158 11-95 (104)
110 2lea_A Serine/arginine-rich sp 99.8 9.3E-21 3.2E-25 130.8 6.2 86 73-158 43-128 (135)
111 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-19 4E-24 115.0 10.7 74 76-155 6-79 (89)
112 2fc8_A NCL protein; structure 99.8 1.4E-19 4.8E-24 118.7 11.6 85 72-159 10-94 (102)
113 2hgl_A HNRPF protein, heteroge 99.8 3.7E-20 1.3E-24 127.8 9.1 86 73-160 40-128 (136)
114 2lmi_A GRSF-1, G-rich sequence 99.8 1.8E-20 6.1E-25 124.3 7.3 87 73-161 7-96 (107)
115 2ki2_A SS-DNA binding protein 99.8 3.6E-21 1.2E-25 123.6 3.7 82 78-160 2-83 (90)
116 1x4d_A Matrin 3; structural ge 99.8 3.3E-20 1.1E-24 121.9 8.3 79 74-158 12-93 (102)
117 1nu4_A U1A RNA binding domain; 99.8 2.2E-20 7.6E-25 121.4 7.3 86 73-161 4-93 (97)
118 2ytc_A PRE-mRNA-splicing facto 99.8 1.6E-19 5.3E-24 114.6 11.1 77 73-155 8-85 (85)
119 3smz_A Protein raver-1, ribonu 99.8 1E-20 3.5E-25 145.0 6.6 139 4-158 22-176 (284)
120 4f02_A Polyadenylate-binding p 99.8 1.6E-19 5.4E-24 133.4 12.6 89 73-161 11-99 (213)
121 1x4c_A Splicing factor, argini 99.8 8E-20 2.7E-24 121.3 9.7 80 74-160 12-96 (108)
122 1fj7_A Nucleolin RBD1, protein 99.8 4.1E-21 1.4E-25 125.9 3.3 84 73-158 13-96 (101)
123 2jvr_A Nucleolar protein 3; RN 99.8 5.3E-20 1.8E-24 122.8 8.7 84 73-160 24-108 (111)
124 2ad9_A Polypyrimidine tract-bi 99.8 1.3E-19 4.3E-24 122.1 10.1 81 73-159 27-109 (119)
125 2dnn_A RNA-binding protein 12; 99.8 1.4E-19 4.8E-24 120.4 10.2 83 75-160 14-96 (109)
126 2cpx_A Hypothetical protein FL 99.8 3.3E-20 1.1E-24 124.3 6.9 87 73-159 21-107 (115)
127 1wez_A HnRNP H', FTP-3, hetero 99.8 1.1E-19 3.7E-24 119.6 9.2 83 73-158 11-93 (102)
128 3lqv_A PRE-mRNA branch site pr 99.8 1.7E-19 5.9E-24 120.8 10.4 82 74-158 5-86 (115)
129 1why_A Hypothetical protein ri 99.8 3.5E-19 1.2E-23 115.9 11.5 80 73-158 13-94 (97)
130 2f3j_A RNA and export factor b 99.8 3.1E-19 1.1E-23 128.4 12.4 85 73-158 84-168 (177)
131 2cpj_A Non-POU domain-containi 99.8 2E-19 6.8E-24 117.5 10.2 80 73-158 11-90 (99)
132 2dnq_A RNA-binding protein 4B; 99.8 2.1E-19 7.1E-24 115.4 10.1 79 73-159 4-82 (90)
133 1x4f_A Matrin 3; structural ge 99.8 1.4E-19 4.8E-24 120.7 9.2 81 73-159 21-104 (112)
134 2krb_A Eukaryotic translation 99.8 3.4E-20 1.2E-24 116.8 5.9 73 77-151 1-80 (81)
135 2e5j_A Methenyltetrahydrofolat 99.8 2.8E-19 9.5E-24 116.4 10.4 81 73-158 15-95 (97)
136 3sde_A Paraspeckle component 1 99.8 2.5E-20 8.5E-25 141.7 6.1 137 5-157 23-179 (261)
137 2la4_A Nuclear and cytoplasmic 99.8 1.8E-19 6E-24 118.1 8.9 78 74-157 24-101 (101)
138 2ghp_A U4/U6 snRNA-associated 99.8 1.9E-20 6.4E-25 144.1 4.8 142 5-157 118-291 (292)
139 1iqt_A AUF1, heterogeneous nuc 99.8 2.9E-20 1E-24 115.3 4.7 75 79-154 1-75 (75)
140 1fjc_A Nucleolin RBD2, protein 99.8 1.1E-19 3.8E-24 117.9 7.6 82 72-158 11-92 (96)
141 2lcw_A RNA-binding protein FUS 99.7 3.5E-21 1.2E-25 129.4 0.0 88 74-161 4-99 (116)
142 2cpd_A Apobec-1 stimulating pr 99.8 1.6E-18 5.3E-23 113.2 12.7 79 72-158 10-90 (99)
143 1x4g_A Nucleolysin TIAR; struc 99.8 4.3E-19 1.5E-23 117.9 10.1 82 73-160 21-102 (109)
144 1fxl_A Paraneoplastic encephal 99.8 9.3E-19 3.2E-23 123.5 12.4 83 76-158 1-83 (167)
145 2j8a_A Histone-lysine N-methyl 99.8 3.1E-19 1E-23 120.5 9.0 81 78-158 3-97 (136)
146 2xs2_A Deleted in azoospermia- 99.8 8E-20 2.7E-24 119.9 5.9 84 74-160 6-89 (102)
147 2dgu_A Heterogeneous nuclear r 99.8 2.9E-19 9.8E-24 117.6 8.5 80 73-160 7-86 (103)
148 2dgt_A RNA-binding protein 30; 99.8 1.4E-18 4.8E-23 111.9 11.6 78 73-158 6-83 (92)
149 3egn_A RNA-binding protein 40; 99.8 5E-20 1.7E-24 128.1 4.7 86 74-160 42-133 (143)
150 2dha_A FLJ20171 protein; RRM d 99.8 3.8E-19 1.3E-23 120.7 8.8 85 75-161 21-109 (123)
151 1b7f_A Protein (SXL-lethal pro 99.8 8.1E-19 2.8E-23 124.1 10.9 83 76-158 2-84 (168)
152 2i2y_A Fusion protein consists 99.8 5.1E-19 1.7E-23 123.9 9.6 82 72-158 68-149 (150)
153 2kvi_A Nuclear polyadenylated 99.8 3.1E-19 1E-23 116.0 7.6 80 73-160 6-86 (96)
154 3pgw_S U1-70K; protein-RNA com 99.8 1.1E-18 3.6E-23 141.6 12.4 86 73-158 98-183 (437)
155 2hvz_A Splicing factor, argini 99.8 7.2E-20 2.5E-24 119.9 4.5 76 78-158 1-76 (101)
156 1wf1_A RNA-binding protein RAL 99.8 1.6E-18 5.6E-23 115.2 10.7 78 73-158 23-101 (110)
157 2dnp_A RNA-binding protein 14; 99.8 1.6E-18 5.5E-23 111.2 10.2 78 73-158 5-82 (90)
158 1whx_A Hypothetical protein ri 99.8 4.2E-19 1.4E-23 118.4 7.5 75 76-156 9-83 (111)
159 2cqh_A IGF-II mRNA-binding pro 99.8 6.5E-19 2.2E-23 113.7 8.1 80 73-159 4-85 (93)
160 3pgw_A U1-A; protein-RNA compl 99.8 3.7E-19 1.3E-23 136.2 8.1 78 74-156 204-282 (282)
161 2e44_A Insulin-like growth fac 99.8 1.3E-18 4.3E-23 112.9 9.1 81 73-157 11-92 (96)
162 2hgm_A HNRPF protein, heteroge 99.8 6.2E-19 2.1E-23 120.0 7.4 82 73-157 38-121 (126)
163 1l3k_A Heterogeneous nuclear r 99.8 2.6E-18 9E-23 124.4 11.1 87 73-160 9-95 (196)
164 2ghp_A U4/U6 snRNA-associated 99.8 8E-20 2.7E-24 140.6 2.5 146 4-161 41-201 (292)
165 3d2w_A TAR DNA-binding protein 99.8 3.6E-18 1.2E-22 109.5 9.9 79 73-160 7-87 (89)
166 1x5p_A Negative elongation fac 99.8 1.2E-17 4E-22 108.6 12.4 79 73-159 11-89 (97)
167 1wg1_A KIAA1579 protein, homol 99.8 3.1E-18 1.1E-22 109.5 9.3 76 75-157 3-78 (88)
168 2e5i_A Heterogeneous nuclear r 99.8 1.5E-17 5.2E-22 112.7 13.0 75 78-158 26-103 (124)
169 2e5g_A U6 snRNA-specific termi 99.8 3.8E-18 1.3E-22 110.3 9.4 78 75-158 6-83 (94)
170 2hgn_A Heterogeneous nuclear r 99.8 3.2E-19 1.1E-23 123.5 4.4 84 73-159 42-125 (139)
171 2cq2_A Hypothetical protein LO 99.8 2.7E-18 9.3E-23 114.6 8.3 78 74-157 22-106 (114)
172 1sjr_A Polypyrimidine tract-bi 99.8 5.7E-18 2E-22 119.6 10.0 79 76-158 45-125 (164)
173 3zzy_A Polypyrimidine tract-bi 99.8 1.3E-17 4.5E-22 113.7 11.4 78 75-157 26-106 (130)
174 3md3_A Nuclear and cytoplasmic 99.8 5.9E-18 2E-22 119.2 10.1 79 78-157 1-79 (166)
175 2diu_A KIAA0430 protein; struc 99.7 4.1E-18 1.4E-22 109.0 7.9 75 75-159 6-86 (96)
176 1qm9_A Polypyrimidine tract-bi 99.7 1E-18 3.4E-23 127.2 5.6 79 74-157 117-197 (198)
177 2dnl_A Cytoplasmic polyadenyla 99.7 4.6E-18 1.6E-22 113.8 8.3 78 74-154 5-85 (114)
178 3tyt_A Heterogeneous nuclear r 99.7 1.3E-17 4.6E-22 122.5 10.9 77 75-156 2-79 (205)
179 2qfj_A FBP-interacting repress 99.7 9.8E-18 3.3E-22 123.2 10.2 83 76-158 27-109 (216)
180 3beg_B Splicing factor, argini 99.7 4.3E-18 1.5E-22 114.2 7.2 77 75-158 14-95 (115)
181 2bz2_A Negative elongation fac 99.7 8.9E-18 3E-22 113.7 8.6 80 73-160 35-114 (121)
182 3tyt_A Heterogeneous nuclear r 99.7 1.2E-18 4E-23 128.2 3.5 78 75-154 121-204 (205)
183 2cjk_A Nuclear polyadenylated 99.7 1.7E-17 5.7E-22 117.3 9.2 83 76-160 2-84 (167)
184 3nmr_A Cugbp ELAV-like family 99.7 2.9E-17 1E-21 116.7 10.2 82 76-157 2-88 (175)
185 2voo_A Lupus LA protein; RNA-b 99.7 4.7E-17 1.6E-21 118.5 11.4 83 76-160 108-190 (193)
186 2pe8_A Splicing factor 45; RRM 99.7 4.5E-17 1.5E-21 107.5 10.1 84 75-158 6-95 (105)
187 2adc_A Polypyrimidine tract-bi 99.7 2.1E-18 7.3E-23 128.6 4.2 79 74-157 148-228 (229)
188 2hzc_A Splicing factor U2AF 65 99.7 2.9E-17 1E-21 104.4 8.5 72 75-153 4-86 (87)
189 3pgw_A U1-A; protein-RNA compl 99.7 9.3E-17 3.2E-21 122.8 12.0 83 73-158 5-91 (282)
190 1wf0_A TDP-43, TAR DNA-binding 99.7 1.6E-17 5.5E-22 106.0 6.1 78 75-159 3-80 (88)
191 3u1l_A PRE-mRNA-splicing facto 99.7 4.1E-17 1.4E-21 122.1 8.3 82 73-160 130-232 (240)
192 2adc_A Polypyrimidine tract-bi 99.7 9.9E-17 3.4E-21 119.5 8.6 80 73-157 30-110 (229)
193 3sde_A Paraspeckle component 1 99.7 7.4E-16 2.5E-20 116.9 10.9 78 73-156 18-95 (261)
194 1fje_B Nucleolin RBD12, protei 99.6 4.3E-17 1.5E-21 116.2 3.2 85 72-158 8-92 (175)
195 1qm9_A Polypyrimidine tract-bi 99.6 3.1E-16 1E-20 114.0 7.3 77 76-157 2-79 (198)
196 2dit_A HIV TAT specific factor 99.6 2.7E-15 9.4E-20 99.9 11.2 82 73-158 11-103 (112)
197 1jmt_A Splicing factor U2AF 35 99.6 3E-16 1E-20 103.4 5.1 72 82-154 20-103 (104)
198 3v4m_A Splicing factor U2AF 65 99.6 4.2E-15 1.4E-19 98.0 9.2 84 75-158 3-98 (105)
199 2g4b_A Splicing factor U2AF 65 99.6 6.6E-15 2.3E-19 104.3 8.6 75 76-157 3-88 (172)
200 3ue2_A Poly(U)-binding-splicin 99.6 1.9E-14 6.5E-19 96.7 9.9 82 76-157 19-109 (118)
201 2yh0_A Splicing factor U2AF 65 99.6 1.1E-14 3.7E-19 105.4 8.7 75 76-157 3-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.5E-13 5.3E-18 89.6 10.7 65 87-158 27-91 (100)
203 3tht_A Alkylated DNA repair pr 99.5 6.2E-14 2.1E-18 110.0 9.5 78 72-155 13-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 1.2E-12 4.1E-17 87.3 11.1 84 75-162 5-98 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 8.1E-12 2.8E-16 79.1 9.1 75 74-157 4-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 8.8E-12 3E-16 83.6 8.9 81 71-157 12-96 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 1E-10 3.6E-15 74.4 6.9 75 73-156 11-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 3E-10 1E-14 83.9 8.8 69 89-157 141-213 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 2.2E-08 7.5E-13 65.1 9.5 75 75-155 19-98 (117)
210 1wey_A Calcipressin 1; structu 98.0 1.9E-05 6.7E-10 50.9 7.0 75 77-157 5-84 (104)
211 1whv_A Poly(A)-specific ribonu 97.9 6.5E-05 2.2E-09 47.8 8.1 57 74-139 13-69 (100)
212 2dhx_A Poly (ADP-ribose) polym 97.8 0.00042 1.4E-08 44.5 9.9 73 75-156 6-83 (104)
213 1wwh_A Nucleoporin 35, nucleop 97.6 0.00038 1.3E-08 46.0 8.3 75 73-155 20-95 (119)
214 1uw4_A UPF3X; nonsense mediate 97.6 0.00073 2.5E-08 42.6 8.9 78 78-155 2-86 (91)
215 3ctr_A Poly(A)-specific ribonu 97.6 0.00011 3.9E-09 46.8 5.0 54 78-140 7-60 (101)
216 4f25_A Polyadenylate-binding p 97.3 1.4E-06 4.9E-11 57.5 -7.0 28 4-31 5-32 (115)
217 3p3d_A Nucleoporin 53; structu 96.9 0.0013 4.4E-08 44.1 4.4 77 77-155 7-97 (132)
218 2l08_A Regulator of nonsense t 96.6 0.0085 2.9E-07 38.0 6.5 80 76-155 8-94 (97)
219 2kn4_A Immunoglobulin G-bindin 96.4 0.0046 1.6E-07 42.4 4.7 35 106-142 2-36 (158)
220 3pq1_A Poly(A) RNA polymerase; 96.3 0.0024 8.1E-08 51.9 3.3 55 77-137 53-107 (464)
221 2i2y_A Fusion protein consists 96.2 0.002 6.7E-08 44.0 1.9 42 115-157 9-51 (150)
222 1uaw_A Mouse-musashi-1; RNP-ty 95.2 0.0055 1.9E-07 36.5 0.9 54 5-67 1-54 (77)
223 2lkz_A RNA-binding protein 5; 94.7 0.0078 2.7E-07 38.0 0.8 57 4-67 9-65 (95)
224 3lqv_A PRE-mRNA branch site pr 94.1 0.00085 2.9E-08 43.7 -5.0 88 4-103 8-109 (115)
225 3d45_A Poly(A)-specific ribonu 94.0 0.23 7.7E-06 40.8 8.1 55 77-140 440-494 (507)
226 2m2b_A RNA-binding protein 10; 93.9 0.013 4.5E-07 39.0 0.6 54 5-65 24-77 (131)
227 2ki2_A SS-DNA binding protein 93.9 0.0067 2.3E-07 37.4 -0.9 54 4-66 1-54 (90)
228 2hvz_A Splicing factor, argini 93.9 0.00092 3.1E-08 42.5 -5.1 28 5-32 1-28 (101)
229 2lcw_A RNA-binding protein FUS 92.5 0.014 4.9E-07 37.8 0.0 66 5-71 8-73 (116)
230 1iqt_A AUF1, heterogeneous nuc 93.3 0.013 4.5E-07 34.6 -0.3 52 6-66 1-52 (75)
231 2lxi_A RNA-binding protein 10; 93.2 0.012 4.1E-07 36.6 -0.6 53 5-66 2-55 (91)
232 1wel_A RNA-binding protein 12; 92.9 0.014 4.7E-07 38.4 -0.6 53 5-66 26-78 (124)
233 2dnl_A Cytoplasmic polyadenyla 92.9 0.028 9.7E-07 36.3 0.9 54 4-67 8-64 (114)
234 4fxv_A ELAV-like protein 1; RN 92.9 0.0047 1.6E-07 39.2 -2.9 51 5-64 20-70 (99)
235 2rs2_A Musashi-1, RNA-binding 92.7 0.015 5.1E-07 37.5 -0.7 27 5-31 26-52 (109)
236 2j8a_A Histone-lysine N-methyl 92.5 0.0086 2.9E-07 40.3 -2.0 53 3-64 1-57 (136)
237 2xs2_A Deleted in azoospermia- 92.5 0.0029 9.9E-08 40.1 -4.3 58 4-71 9-66 (102)
238 3p5t_L Cleavage and polyadenyl 92.5 0.01 3.6E-07 36.6 -1.6 51 6-65 3-55 (90)
239 2cqb_A Peptidyl-prolyl CIS-tra 92.5 0.03 1E-06 35.2 0.6 27 5-31 13-39 (102)
240 2mss_A Protein (musashi1); RNA 92.5 0.018 6.2E-07 34.0 -0.5 51 6-65 1-51 (75)
241 2lmi_A GRSF-1, G-rich sequence 92.4 0.03 1E-06 35.7 0.5 54 5-65 12-65 (107)
242 1x4e_A RNA binding motif, sing 92.3 0.027 9.1E-07 34.2 0.2 28 4-31 5-32 (85)
243 3s8s_A Histone-lysine N-methyl 92.0 0.0093 3.2E-07 38.6 -2.4 52 5-65 7-58 (110)
244 2dnm_A SRP46 splicing factor; 92.0 0.022 7.4E-07 36.0 -0.6 54 4-66 13-66 (103)
245 1s79_A Lupus LA protein; RRM, 91.9 0.013 4.4E-07 37.5 -1.8 52 5-66 12-63 (103)
246 1x4b_A Heterogeneous nuclear r 91.8 0.028 9.6E-07 36.3 -0.2 51 5-64 28-78 (116)
247 1wg5_A Heterogeneous nuclear r 91.6 0.02 6.8E-07 36.4 -1.1 53 4-66 15-68 (104)
248 2dgs_A DAZ-associated protein 91.6 0.023 7.8E-07 35.6 -0.8 28 4-31 10-37 (99)
249 2cq4_A RNA binding motif prote 91.5 0.023 7.7E-07 36.7 -0.9 51 5-64 26-76 (114)
250 1wez_A HnRNP H', FTP-3, hetero 91.4 0.03 1E-06 35.6 -0.4 53 4-67 15-67 (102)
251 2khc_A Testis-specific RNP-typ 91.2 0.023 7.9E-07 36.8 -1.1 51 5-64 41-91 (118)
252 2hgm_A HNRPF protein, heteroge 91.2 0.031 1.1E-06 37.2 -0.5 56 5-69 43-98 (126)
253 1x5t_A Splicing factor 3B subu 91.2 0.032 1.1E-06 34.6 -0.4 28 4-31 5-32 (96)
254 2j76_E EIF-4B, EIF4B, eukaryot 91.0 0.049 1.7E-06 34.2 0.4 26 4-29 19-44 (100)
255 3ns6_A Eukaryotic translation 91.0 0.0086 2.9E-07 37.9 -3.3 54 4-66 6-65 (100)
256 3s7r_A Heterogeneous nuclear r 90.9 0.013 4.5E-07 35.8 -2.4 50 5-63 12-61 (87)
257 2div_A TRNA selenocysteine ass 90.7 0.02 6.7E-07 35.9 -1.8 29 3-31 8-36 (99)
258 2cqp_A RNA-binding protein 12; 90.7 0.036 1.2E-06 34.6 -0.5 27 5-31 16-42 (98)
259 2dgp_A Bruno-like 4, RNA bindi 90.7 0.024 8.4E-07 35.9 -1.4 27 5-31 14-40 (106)
260 2hgl_A HNRPF protein, heteroge 90.7 0.034 1.1E-06 37.5 -0.7 54 5-65 45-98 (136)
261 3q2s_C Cleavage and polyadenyl 90.5 0.017 5.8E-07 42.4 -2.5 56 5-69 69-126 (229)
262 3ucg_A Polyadenylate-binding p 90.4 0.021 7.3E-07 34.9 -1.8 52 5-65 7-58 (89)
263 2cq0_A Eukaryotic translation 90.4 0.031 1E-06 35.3 -1.0 28 4-31 15-42 (103)
264 2la6_A RNA-binding protein FUS 90.4 0.023 7.9E-07 35.6 -1.6 28 4-31 13-40 (99)
265 2dh8_A DAZ-associated protein 90.3 0.016 5.6E-07 36.7 -2.4 53 5-66 17-69 (105)
266 2dnn_A RNA-binding protein 12; 90.2 0.06 2.1E-06 34.7 0.3 49 5-64 17-65 (109)
267 2ek1_A RNA-binding protein 12; 90.2 0.036 1.2E-06 34.3 -0.9 27 5-31 16-42 (95)
268 3pgw_S U1-70K; protein-RNA com 90.2 0.015 5.1E-07 46.9 -3.3 56 5-69 103-158 (437)
269 2cpe_A RNA-binding protein EWS 90.2 0.049 1.7E-06 34.9 -0.3 28 4-31 15-42 (113)
270 2hgn_A Heterogeneous nuclear r 90.1 0.084 2.9E-06 35.6 0.9 52 5-67 47-98 (139)
271 1x5u_A Splicing factor 3B subu 90.1 0.028 9.7E-07 35.5 -1.4 27 5-31 16-42 (105)
272 1wf0_A TDP-43, TAR DNA-binding 90.0 0.098 3.4E-06 31.8 1.1 28 4-31 5-32 (88)
273 2dnz_A Probable RNA-binding pr 90.0 0.036 1.2E-06 34.3 -1.0 28 4-31 5-32 (95)
274 3md1_A Nuclear and cytoplasmic 89.8 0.021 7.2E-07 34.4 -2.1 27 5-31 2-28 (83)
275 1oo0_B CG8781-PA, drosophila Y 89.8 0.034 1.2E-06 35.5 -1.2 27 5-31 27-53 (110)
276 2cpz_A CUG triplet repeat RNA- 89.8 0.028 9.5E-07 36.3 -1.7 27 5-31 26-52 (115)
277 1whw_A Hypothetical protein ri 89.8 0.034 1.2E-06 34.7 -1.2 27 5-31 9-35 (99)
278 2e5h_A Zinc finger CCHC-type a 89.8 0.048 1.7E-06 33.6 -0.5 27 5-31 17-43 (94)
279 2cqd_A RNA-binding region cont 89.7 0.032 1.1E-06 36.0 -1.4 27 5-31 18-44 (116)
280 3n9u_C Cleavage and polyadenyl 89.6 0.016 5.6E-07 39.9 -3.0 49 5-62 56-106 (156)
281 1x4h_A RNA-binding protein 28; 89.5 0.029 1E-06 35.8 -1.8 28 4-31 15-42 (111)
282 1wi8_A EIF-4B, eukaryotic tran 89.4 0.063 2.2E-06 33.9 -0.2 25 5-29 16-40 (104)
283 2x1f_A MRNA 3'-END-processing 89.4 0.032 1.1E-06 34.7 -1.6 27 5-31 3-29 (96)
284 2lea_A Serine/arginine-rich sp 89.4 0.075 2.6E-06 35.5 0.2 53 5-66 48-100 (135)
285 2fy1_A RNA-binding motif prote 89.3 0.056 1.9E-06 35.1 -0.5 27 5-31 8-34 (116)
286 3ex7_B RNA-binding protein 8A; 89.1 0.045 1.6E-06 35.8 -1.1 27 5-31 23-49 (126)
287 1x5s_A Cold-inducible RNA-bind 89.1 0.042 1.4E-06 34.5 -1.2 27 5-31 13-39 (102)
288 2cqg_A TDP-43, TAR DNA-binding 88.6 0.023 7.8E-07 35.9 -2.7 27 5-31 16-42 (103)
289 1x4f_A Matrin 3; structural ge 88.5 0.14 4.7E-06 33.3 1.0 28 4-31 25-53 (112)
290 1p27_B RNA-binding protein 8A; 88.3 0.029 9.8E-07 35.6 -2.4 27 5-31 24-50 (106)
291 2db1_A Heterogeneous nuclear r 88.3 0.048 1.6E-06 35.5 -1.4 27 5-31 18-44 (118)
292 2dha_A FLJ20171 protein; RRM d 88.1 0.063 2.2E-06 35.5 -0.9 27 5-31 24-50 (123)
293 3d2w_A TAR DNA-binding protein 88.1 0.05 1.7E-06 33.6 -1.3 28 4-31 11-38 (89)
294 2cpy_A RNA-binding protein 12; 87.8 0.18 6.3E-06 32.3 1.3 27 5-31 16-42 (114)
295 2cph_A RNA binding motif prote 87.7 0.046 1.6E-06 34.6 -1.7 27 5-31 16-42 (107)
296 2kxn_B Transformer-2 protein h 87.7 0.051 1.7E-06 36.1 -1.5 51 5-64 47-97 (129)
297 3mdf_A Peptidyl-prolyl CIS-tra 87.6 0.034 1.2E-06 33.6 -2.3 27 5-31 8-34 (85)
298 3bs9_A Nucleolysin TIA-1 isofo 87.3 0.034 1.2E-06 33.7 -2.4 27 5-31 7-33 (87)
299 2kt5_A RNA and export factor-b 87.2 0.089 3.1E-06 34.3 -0.6 28 4-31 35-62 (124)
300 2nlw_A Eukaryotic translation 87.0 0.057 1.9E-06 34.3 -1.6 54 3-67 14-73 (105)
301 2jwn_A Embryonic polyadenylate 87.0 0.036 1.2E-06 36.2 -2.6 27 5-31 37-63 (124)
302 2dis_A Unnamed protein product 86.8 0.047 1.6E-06 34.7 -2.1 26 5-30 9-34 (109)
303 2jrs_A RNA-binding protein 39; 86.5 0.039 1.3E-06 35.4 -2.6 28 4-31 26-53 (108)
304 2dgo_A Cytotoxic granule-assoc 86.3 0.044 1.5E-06 35.2 -2.4 27 5-31 16-42 (115)
305 2f3j_A RNA and export factor b 86.1 0.12 4.2E-06 36.2 -0.3 51 4-64 88-138 (177)
306 2dgw_A Probable RNA-binding pr 86.0 0.078 2.7E-06 32.5 -1.3 24 5-28 11-34 (91)
307 2err_A Ataxin-2-binding protei 86.0 0.19 6.5E-06 32.0 0.6 28 4-31 29-56 (109)
308 1x4d_A Matrin 3; structural ge 85.9 0.15 5E-06 32.5 -0.0 28 4-31 15-43 (102)
309 2ku7_A MLL1 PHD3-CYP33 RRM chi 85.9 0.089 3E-06 34.9 -1.1 27 5-31 64-90 (140)
310 1x5o_A RNA binding motif, sing 85.9 0.068 2.3E-06 34.3 -1.7 27 5-31 26-52 (114)
311 1p1t_A Cleavage stimulation fa 85.8 0.047 1.6E-06 34.3 -2.4 27 5-31 9-35 (104)
312 2dng_A Eukaryotic translation 85.4 0.066 2.3E-06 33.7 -1.9 25 4-28 15-39 (103)
313 1sjq_A Polypyrimidine tract-bi 85.4 0.06 2.1E-06 34.6 -2.1 28 4-31 16-43 (105)
314 1fj7_A Nucleolin RBD1, protein 85.3 0.025 8.6E-07 35.6 -3.9 51 4-64 17-67 (101)
315 2d9p_A Polyadenylate-binding p 85.0 0.074 2.5E-06 33.4 -1.8 28 4-31 15-42 (103)
316 2dnh_A Bruno-like 5, RNA bindi 84.9 0.057 1.9E-06 34.1 -2.4 28 4-31 15-42 (105)
317 2dhg_A TRNA selenocysteine ass 84.8 0.038 1.3E-06 34.9 -3.3 27 5-31 10-37 (104)
318 2cpx_A Hypothetical protein FL 84.6 0.076 2.6E-06 34.1 -1.9 27 5-31 26-52 (115)
319 1h2v_Z 20 kDa nuclear CAP bind 84.4 0.061 2.1E-06 36.7 -2.6 28 4-31 39-66 (156)
320 1rk8_A CG8781-PA, CG8781-PA pr 84.3 0.066 2.3E-06 36.9 -2.5 27 5-31 73-99 (165)
321 2wbr_A GW182, gawky, LD47780P; 84.1 0.045 1.5E-06 34.2 -3.0 78 3-99 6-88 (89)
322 2cqc_A Arginine/serine-rich sp 84.0 0.048 1.6E-06 33.7 -3.0 27 5-31 16-42 (95)
323 2do4_A Squamous cell carcinoma 83.9 0.06 2E-06 33.7 -2.6 27 5-31 18-44 (100)
324 2cpj_A Non-POU domain-containi 83.7 0.22 7.6E-06 30.9 0.1 27 5-31 16-42 (99)
325 2cpi_A CCR4-NOT transcription 83.6 0.17 5.8E-06 32.4 -0.5 28 4-31 15-45 (111)
326 2ywk_A Putative RNA-binding pr 83.2 0.065 2.2E-06 33.1 -2.6 27 5-31 17-43 (95)
327 4a8x_A RNA-binding protein wit 82.6 0.062 2.1E-06 32.6 -2.9 27 5-31 5-31 (88)
328 3ulh_A THO complex subunit 4; 82.5 0.072 2.5E-06 33.7 -2.7 28 4-31 29-56 (107)
329 2cq1_A PTB-like protein L; RRM 81.7 0.22 7.6E-06 31.5 -0.5 27 5-31 16-42 (101)
330 2ad9_A Polypyrimidine tract-bi 81.6 0.16 5.6E-06 33.3 -1.2 27 5-31 32-58 (119)
331 1u6f_A Tcubp1, RNA-binding pro 81.5 0.043 1.5E-06 36.6 -4.2 27 5-31 43-69 (139)
332 2cq2_A Hypothetical protein LO 81.4 0.026 9E-07 36.9 -5.1 49 5-68 26-76 (114)
333 2la4_A Nuclear and cytoplasmic 81.4 0.2 6.8E-06 31.2 -0.8 28 4-31 27-54 (101)
334 2cpf_A RNA binding motif prote 81.4 0.047 1.6E-06 34.0 -3.8 27 5-31 6-32 (98)
335 2cq3_A RNA-binding protein 9; 80.1 0.22 7.5E-06 31.1 -1.0 28 4-31 15-42 (103)
336 2jvr_A Nucleolar protein 3; RN 80.0 0.23 7.9E-06 32.0 -0.9 25 5-29 29-53 (111)
337 3egn_A RNA-binding protein 40; 78.3 0.24 8.3E-06 33.0 -1.2 28 4-31 45-72 (143)
338 2dgx_A KIAA0430 protein; RRM d 78.2 0.16 5.6E-06 31.5 -2.0 28 4-31 9-40 (96)
339 1whx_A Hypothetical protein ri 77.4 0.33 1.1E-05 31.0 -0.8 27 5-31 11-37 (111)
340 2do0_A HnRNP M, heterogeneous 77.3 0.13 4.6E-06 32.8 -2.7 28 4-31 15-42 (114)
341 1wex_A Hypothetical protein (r 77.2 0.26 9.1E-06 31.3 -1.2 28 4-31 15-42 (104)
342 1x4a_A Splicing factor, argini 76.4 0.34 1.2E-05 30.6 -0.9 27 5-31 23-49 (109)
343 2g0c_A ATP-dependent RNA helic 76.2 9 0.00031 22.3 5.6 68 79-155 2-75 (76)
344 3r27_A HnRNP L, heterogeneous 75.4 0.27 9.1E-06 31.2 -1.6 28 4-31 21-48 (100)
345 2voo_A Lupus LA protein; RNA-b 68.0 0.36 1.2E-05 34.2 -2.5 27 5-31 110-136 (193)
346 1x4c_A Splicing factor, argini 65.6 1.1 3.6E-05 28.3 -0.4 28 4-31 15-42 (108)
347 3beg_B Splicing factor, argini 63.9 1 3.5E-05 28.8 -0.7 28 4-31 16-43 (115)
348 2jvo_A Nucleolar protein 3; nu 60.1 2.4 8.1E-05 26.7 0.5 28 4-31 31-58 (108)
349 1wf1_A RNA-binding protein RAL 58.3 2.6 8.8E-05 26.4 0.5 28 4-31 27-55 (110)
350 2e5i_A Heterogeneous nuclear r 55.2 2.7 9.2E-05 27.5 0.2 27 5-31 26-52 (124)
351 3zzy_A Polypyrimidine tract-bi 54.5 2.9 9.8E-05 27.7 0.2 27 5-31 29-55 (130)
352 1sjr_A Polypyrimidine tract-bi 45.6 3.2 0.00011 28.7 -0.7 28 4-31 46-73 (164)
353 2i9x_A Putative septation prot 34.7 67 0.0023 19.5 4.2 26 103-128 5-30 (87)
354 3mfb_A Uncharacterized protein 34.1 87 0.003 21.3 5.0 37 89-125 3-42 (157)
355 4bby_A Alkyldihydroxyacetoneph 33.1 44 0.0015 28.1 4.2 56 83-139 349-408 (658)
356 2ia9_A Putative septation prot 29.5 89 0.003 19.5 4.2 26 103-128 5-30 (100)
357 2i9z_A Putative septation prot 29.1 92 0.0032 19.6 4.2 26 103-128 5-30 (105)
358 4e8u_A Putative uncharacterize 26.5 1.6E+02 0.0055 20.3 7.8 56 79-137 14-81 (172)
359 3fut_A Dimethyladenosine trans 25.5 52 0.0018 24.3 3.0 31 78-109 111-141 (271)
360 3fry_A Probable copper-exporti 22.9 1E+02 0.0035 16.8 5.4 54 78-138 7-60 (73)
361 4eyt_A Telomerase associated p 22.3 1.4E+02 0.0049 18.2 8.2 57 75-139 10-66 (129)
362 2lfv_A Protein DAMX; cell divi 25.4 22 0.00075 22.5 0.0 64 75-143 23-88 (106)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=2e-24 Score=141.65 Aligned_cols=82 Identities=30% Similarity=0.523 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
-.+++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 030819 155 KS 156 (171)
Q Consensus 155 ~~ 156 (171)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 86
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=140.09 Aligned_cols=90 Identities=13% Similarity=0.272 Sum_probs=84.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
.++.++|||+|||+++++++|+++|++||.|.++.++.|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcHHHHHh
Q 030819 154 AKSRAELRQA 163 (171)
Q Consensus 154 ~~~~~~~~~~ 163 (171)
+.....+++.
T Consensus 83 a~~~~~~~~~ 92 (110)
T 3s8s_A 83 DIKGQQRMKY 92 (110)
T ss_dssp CSTTHHHHHH
T ss_pred CCCCcHHHHH
Confidence 9877665543
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.91 E-value=1.9e-25 Score=165.30 Aligned_cols=150 Identities=23% Similarity=0.380 Sum_probs=117.6
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCC-------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHS------------- 70 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 70 (171)
.+.|||+|++++++++.+...|...+++ .+.....+..++++++++++.+.....+..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I---------~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~ 85 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPI---------LSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 85 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCE---------EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCE---------EEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence 3579999999999999999999998876 333333333344555566655543321110
Q ss_pred -----------CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 030819 71 -----------LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (171)
Q Consensus 71 -----------~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 139 (171)
........+|||+|||+.+++++|+++|++||.|..+.++.+. +.++|||||+|.+.++|.+|++.|
T Consensus 86 ~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 86 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp ECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHh
Confidence 0112245789999999999999999999999999999999885 457999999999999999999999
Q ss_pred CCceeCCeEEEEEEecCcHHHHHhh
Q 030819 140 HGKFLDGRVIFVEIAKSRAELRQAF 164 (171)
Q Consensus 140 ~g~~i~g~~i~v~~~~~~~~~~~~~ 164 (171)
||..|+|+.|+|.+++++.++....
T Consensus 164 ng~~~~g~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp TTCEETTEECEEEECCCHHHHHHHH
T ss_pred CCCEECCEEEEEEEcCCCcccchhh
Confidence 9999999999999999887665443
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.89 E-value=1e-24 Score=154.67 Aligned_cols=144 Identities=19% Similarity=0.310 Sum_probs=118.3
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL------------ 71 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 71 (171)
.+.|||+++++++++..+...|...+++ .+........++++++++++.+..+..+..+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i 73 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTV---------TDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI 73 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCE---------EEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCE---------EEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEc
Confidence 3679999999999999999999988766 3333333434566777777766554422110
Q ss_pred --------CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 030819 72 --------STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF 143 (171)
Q Consensus 72 --------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~ 143 (171)
....+..+|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++ ++|..
T Consensus 74 ~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~ 152 (167)
T 2cjk_A 74 DPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFID 152 (167)
T ss_dssp CCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEEC
T ss_pred ccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEE
Confidence 112245699999999999999999999999999999999998899999999999999999999998 89999
Q ss_pred eCCeEEEEEEecCc
Q 030819 144 LDGRVIFVEIAKSR 157 (171)
Q Consensus 144 i~g~~i~v~~~~~~ 157 (171)
+.|+.|+|.++.++
T Consensus 153 ~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 153 FKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSSCEEEEECCCC
T ss_pred eCCeEEEEeecCCC
Confidence 99999999999876
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.89 E-value=7.2e-24 Score=153.97 Aligned_cols=149 Identities=19% Similarity=0.288 Sum_probs=108.0
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC-----------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP----------------- 66 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 66 (171)
.+.|||+++++++++..+...|...+++.. .........+++++++++.+..+.
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~---------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTD---------CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEE---------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEE---------EEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 357999999999999999999999877622 111122122233333333332211
Q ss_pred ----------CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 030819 67 ----------SPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAI 136 (171)
Q Consensus 67 ----------~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al 136 (171)
............+|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|.+|+
T Consensus 84 l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp CEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred eeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 0011122345689999999999999999999999999999999999989999999999999999999999
Q ss_pred HHhCCceeCCeEEEEEEecCcHHHHH
Q 030819 137 EGMHGKFLDGRVIFVEIAKSRAELRQ 162 (171)
Q Consensus 137 ~~l~g~~i~g~~i~v~~~~~~~~~~~ 162 (171)
.. +|..++|+.|.|.++.++.....
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HC-SCCEETTEECEEEECC-------
T ss_pred Hh-CCcEECCEEEEEEecCChhHhcc
Confidence 85 89999999999999998876654
No 6
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=2.6e-22 Score=128.07 Aligned_cols=83 Identities=25% Similarity=0.499 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
.+.++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCc
Q 030819 155 KSR 157 (171)
Q Consensus 155 ~~~ 157 (171)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 7
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.88 E-value=3.9e-22 Score=130.41 Aligned_cols=85 Identities=24% Similarity=0.380 Sum_probs=80.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE--------VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~ 142 (171)
.....+.++|||+|||+++++++|+++|++||.|.. +.+..++.+|+++|||||+|.+.++|++|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 445667899999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred eeCCeEEEEEEec
Q 030819 143 FLDGRVIFVEIAK 155 (171)
Q Consensus 143 ~i~g~~i~v~~~~ 155 (171)
.+.|+.|+|.+++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.1e-23 Score=147.39 Aligned_cols=141 Identities=20% Similarity=0.373 Sum_probs=109.5
Q ss_pred eeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC-------------------
Q 030819 6 FLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP------------------- 66 (171)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 66 (171)
.|||+|+++++++..+.+.|...+++..-.. ... +.++.++.+++.+....
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i---------~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 71 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKI---------MID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 71 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEE---------ECC-CC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEE---------EEC-CCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence 5899999999999999999998877632111 000 01112222222221111
Q ss_pred -----CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 030819 67 -----SPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141 (171)
Q Consensus 67 -----~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g 141 (171)
.........+..+|||+|||+.+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||
T Consensus 72 ~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 72 KINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp EEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 111223455678999999999999999999999999999999999988999999999999999999999999999
Q ss_pred ceeCCeEEEEEEecC
Q 030819 142 KFLDGRVIFVEIAKS 156 (171)
Q Consensus 142 ~~i~g~~i~v~~~~~ 156 (171)
..+.|+.|+|.|++.
T Consensus 152 ~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 152 QDLNGRPLRINWAAK 166 (166)
T ss_dssp CEETTEECEEEESCC
T ss_pred CccCCcEEEEEecCC
Confidence 999999999999863
No 9
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=5.3e-22 Score=125.53 Aligned_cols=82 Identities=26% Similarity=0.558 Sum_probs=78.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~ 156 (171)
+.+|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|+..|||..+.|+.|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 35899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred cH
Q 030819 157 RA 158 (171)
Q Consensus 157 ~~ 158 (171)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 10
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=7.1e-22 Score=132.59 Aligned_cols=89 Identities=22% Similarity=0.402 Sum_probs=83.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
....++.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEecCcHH
Q 030819 151 VEIAKSRAE 159 (171)
Q Consensus 151 v~~~~~~~~ 159 (171)
|.+++++..
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999987653
No 11
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=8e-22 Score=127.78 Aligned_cols=86 Identities=36% Similarity=0.556 Sum_probs=81.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
....++.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556788999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEecC
Q 030819 151 VEIAKS 156 (171)
Q Consensus 151 v~~~~~ 156 (171)
|.++++
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=8.9e-22 Score=127.38 Aligned_cols=85 Identities=27% Similarity=0.493 Sum_probs=80.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
....++.++|||+|||+++++++|+++|.+||.|..+.+..++.++.++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456788999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEec
Q 030819 151 VEIAK 155 (171)
Q Consensus 151 v~~~~ 155 (171)
|.+++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=131.71 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC--eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ--LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK----FLDGR 147 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~----~i~g~ 147 (171)
...-.+|||+|||+++|+++|+++|++||. +.++++++|+.+|+++|||||+|.+.++|++|++.|||. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 344579999999999999999999999995 678999999999999999999999999999999999997 58999
Q ss_pred EEEEEEecC
Q 030819 148 VIFVEIAKS 156 (171)
Q Consensus 148 ~i~v~~~~~ 156 (171)
+|.|+|+++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=4.1e-23 Score=133.31 Aligned_cols=82 Identities=23% Similarity=0.411 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceeCCeEEEEEEe
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH-GKFLDGRVIFVEIA 154 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~-g~~i~g~~i~v~~~ 154 (171)
+.+|||+|||+++++++|+++|++|| .|.+++++.++.+|.++|||||+|.+.++|++|++.++ +..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 79999999999999999999999999999999999874 55799999999999
Q ss_pred cCcH
Q 030819 155 KSRA 158 (171)
Q Consensus 155 ~~~~ 158 (171)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8765
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=5e-22 Score=126.21 Aligned_cols=82 Identities=33% Similarity=0.573 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45688999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q 030819 154 AK 155 (171)
Q Consensus 154 ~~ 155 (171)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 16
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.88 E-value=1.6e-23 Score=154.28 Aligned_cols=146 Identities=18% Similarity=0.384 Sum_probs=114.2
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCC-------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHS------------- 70 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 70 (171)
++.|||+++.+++++..+...|...+++ .+.........++.++++++.+.....+..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i---------~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPI---------KSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCE---------EEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCE---------EEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 4679999999999999999999988766 222222222233444444444432221000
Q ss_pred ---------C-----------CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHH
Q 030819 71 ---------L-----------STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEE 130 (171)
Q Consensus 71 ---------~-----------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~ 130 (171)
. .......+|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.+
T Consensus 99 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 99 NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp CCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred eEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 0 01244579999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEEecCcH
Q 030819 131 ESRRAIEGMHGKFLDGRVIFVEIAKSRA 158 (171)
Q Consensus 131 ~a~~al~~l~g~~i~g~~i~v~~~~~~~ 158 (171)
+|.+|+..|||..+.|+.|+|.++.++.
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999999999998764
No 17
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=3.6e-22 Score=134.21 Aligned_cols=84 Identities=32% Similarity=0.613 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
...+|||+|||+++++++|+++|++||.|.+++++.++ +.++|||||+|.+.++|++|++.|+|..++|+.|+|.+++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999986 4589999999999999999999999999999999999998
Q ss_pred CcHHHH
Q 030819 156 SRAELR 161 (171)
Q Consensus 156 ~~~~~~ 161 (171)
++..+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 765443
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=4.5e-22 Score=133.49 Aligned_cols=89 Identities=24% Similarity=0.480 Sum_probs=83.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|++.|+|..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEecCcHHH
Q 030819 152 EIAKSRAEL 160 (171)
Q Consensus 152 ~~~~~~~~~ 160 (171)
.+++++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 19
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=7.5e-22 Score=130.30 Aligned_cols=89 Identities=26% Similarity=0.413 Sum_probs=83.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.....+.++|||+|||+++++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|++|+..|+|..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEecCcHH
Q 030819 151 VEIAKSRAE 159 (171)
Q Consensus 151 v~~~~~~~~ 159 (171)
|.+++++..
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999987653
No 20
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=8.2e-22 Score=127.80 Aligned_cols=85 Identities=32% Similarity=0.579 Sum_probs=80.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
.+.++|||+|||+++++++|+++|++||.|..+.+..++.+++++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCcHH
Q 030819 155 KSRAE 159 (171)
Q Consensus 155 ~~~~~ 159 (171)
+++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87653
No 21
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=9e-22 Score=128.00 Aligned_cols=86 Identities=16% Similarity=0.431 Sum_probs=81.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
++++|||+|||.++++++|+++|++||.|.++.+..++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46799999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CcHHHH
Q 030819 156 SRAELR 161 (171)
Q Consensus 156 ~~~~~~ 161 (171)
++....
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 776543
No 22
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=129.19 Aligned_cols=86 Identities=31% Similarity=0.505 Sum_probs=81.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45668999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+++++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998765
No 23
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.87 E-value=5.2e-22 Score=132.03 Aligned_cols=88 Identities=31% Similarity=0.579 Sum_probs=82.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
....++.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556778999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEecCcH
Q 030819 151 VEIAKSRA 158 (171)
Q Consensus 151 v~~~~~~~ 158 (171)
|.+++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 24
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=128.15 Aligned_cols=88 Identities=30% Similarity=0.594 Sum_probs=82.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCcHHH
Q 030819 153 IAKSRAEL 160 (171)
Q Consensus 153 ~~~~~~~~ 160 (171)
+++++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99987643
No 25
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.9e-21 Score=126.43 Aligned_cols=85 Identities=29% Similarity=0.596 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.+..++ +|+++|||||+|.+.++|++|++.|||..+.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+++++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998764
No 26
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=127.71 Aligned_cols=86 Identities=30% Similarity=0.572 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|++ |++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 45667899999999999999999999999999999999999899999999999999999999999 99999999999999
Q ss_pred EecCcHH
Q 030819 153 IAKSRAE 159 (171)
Q Consensus 153 ~~~~~~~ 159 (171)
+++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987653
No 27
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.87 E-value=1.5e-22 Score=143.50 Aligned_cols=142 Identities=24% Similarity=0.353 Sum_probs=110.1
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCC----------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPS---------------- 67 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 67 (171)
.+.|||++++.++++..+...|...+++.. .........++.++++++.+..+..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~---------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 73 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINT---------CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK 73 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEE---------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeE---------EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence 367999999999999999999998877622 1111121222333333333322111
Q ss_pred ------CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 030819 68 ------PHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141 (171)
Q Consensus 68 ------~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g 141 (171)
+.......+..+|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||
T Consensus 74 ~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 74 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp ECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 11112345678999999999999999999999999999999999988999999999999999999999999999
Q ss_pred ceeCC--eEEEEEEe
Q 030819 142 KFLDG--RVIFVEIA 154 (171)
Q Consensus 142 ~~i~g--~~i~v~~~ 154 (171)
..+.| ++|+|.+|
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99988 99999886
No 28
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.6e-22 Score=130.78 Aligned_cols=86 Identities=26% Similarity=0.498 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...++++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+++++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997653
No 29
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=1.5e-22 Score=132.85 Aligned_cols=87 Identities=21% Similarity=0.432 Sum_probs=81.5
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-e
Q 030819 75 QPKTRLFVSGLSF------RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDG-R 147 (171)
Q Consensus 75 ~~~~~l~V~nl~~------~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g-~ 147 (171)
..+++|||+|||+ ++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999899999999999999999999999999999999 9
Q ss_pred EEEEEEecCcHHHH
Q 030819 148 VIFVEIAKSRAELR 161 (171)
Q Consensus 148 ~i~v~~~~~~~~~~ 161 (171)
.|+|.++.++....
T Consensus 84 ~l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 84 RLFLYTMKDVERYN 97 (100)
T ss_dssp BCEEEESHHHHHHH
T ss_pred EEEEEECchhhhhh
Confidence 99999998766543
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9.2e-22 Score=129.23 Aligned_cols=87 Identities=31% Similarity=0.520 Sum_probs=81.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44578899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCcHH
Q 030819 153 IAKSRAE 159 (171)
Q Consensus 153 ~~~~~~~ 159 (171)
+++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987653
No 31
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=8.3e-22 Score=129.71 Aligned_cols=86 Identities=34% Similarity=0.575 Sum_probs=81.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.+..++.++.++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
++++..
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998654
No 32
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2e-21 Score=128.65 Aligned_cols=89 Identities=26% Similarity=0.537 Sum_probs=82.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCeE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMD-KIANRPRGFAFLRYATEEESRRAIEGM-HGKFLDGRV 148 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~~fv~f~~~~~a~~al~~l-~g~~i~g~~ 148 (171)
.....+.++|||+|||+++++++|+++|.+||.|..+.++.+ +.++.++|||||+|.+.++|++|+..| |+..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345567899999999999999999999999999999999998 789999999999999999999999999 999999999
Q ss_pred EEEEEecCcHH
Q 030819 149 IFVEIAKSRAE 159 (171)
Q Consensus 149 i~v~~~~~~~~ 159 (171)
|+|.+++++..
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999987653
No 33
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.87 E-value=2.1e-22 Score=143.39 Aligned_cols=147 Identities=20% Similarity=0.328 Sum_probs=109.3
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCC----------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPS---------------- 67 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 67 (171)
.+.|||+|++++++++.+...|...+....... ............++++++++.+..+..
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~----~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ----APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS----SSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhccccc----CCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 367999999999999999999988722111000 000011111222334444443322211
Q ss_pred -----CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 030819 68 -----PHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (171)
Q Consensus 68 -----~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~ 142 (171)
+..........+|||+|||+.+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||.
T Consensus 80 i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (172)
T 2g4b_A 80 LKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 159 (172)
T ss_dssp CEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC
T ss_pred eeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC
Confidence 111223345789999999999999999999999999999999999889999999999999999999999999999
Q ss_pred eeCCeEEEEEEe
Q 030819 143 FLDGRVIFVEIA 154 (171)
Q Consensus 143 ~i~g~~i~v~~~ 154 (171)
.+.|+.|.|.+|
T Consensus 160 ~~~g~~l~V~~A 171 (172)
T 2g4b_A 160 QLGDKKLLVQRA 171 (172)
T ss_dssp EETTEECEEEEC
T ss_pred EECCeEEEEEeC
Confidence 999999999987
No 34
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=6.5e-22 Score=131.71 Aligned_cols=86 Identities=22% Similarity=0.424 Sum_probs=81.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+++++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998654
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=3.1e-21 Score=128.48 Aligned_cols=87 Identities=30% Similarity=0.542 Sum_probs=81.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CceeCC
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH------GKFLDG 146 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~------g~~i~g 146 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+..|| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 45568899999999999999999999999999999999999899999999999999999999999999 999999
Q ss_pred eEEEEEEecCcHH
Q 030819 147 RVIFVEIAKSRAE 159 (171)
Q Consensus 147 ~~i~v~~~~~~~~ 159 (171)
+.|+|.++.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987653
No 36
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=2.1e-22 Score=129.60 Aligned_cols=83 Identities=18% Similarity=0.424 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFG--QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
.+|||+|||+++++++|+++|++|| .|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CcHHH
Q 030819 156 SRAEL 160 (171)
Q Consensus 156 ~~~~~ 160 (171)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 37
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.87 E-value=1.2e-22 Score=147.70 Aligned_cols=85 Identities=28% Similarity=0.504 Sum_probs=80.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
..+.++|||+|||+.+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCcH
Q 030819 154 AKSRA 158 (171)
Q Consensus 154 ~~~~~ 158 (171)
++++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 38
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=2.6e-21 Score=130.34 Aligned_cols=84 Identities=20% Similarity=0.397 Sum_probs=78.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEec
Q 030819 152 EIAK 155 (171)
Q Consensus 152 ~~~~ 155 (171)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9975
No 39
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=127.25 Aligned_cols=85 Identities=27% Similarity=0.504 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEV-NLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
.+.++|||+|||+++++++|+++|++||.|..+ .++.++.++.++|||||+|.+.++|++|+..|||..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ecCcHH
Q 030819 154 AKSRAE 159 (171)
Q Consensus 154 ~~~~~~ 159 (171)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987653
No 40
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=137.47 Aligned_cols=85 Identities=21% Similarity=0.416 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFG--QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...++|||+|||+++++++|+++|..|| .|.++.++.|+.+|+++|||||+|.+.++|++||+.|||..+.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EecCcHH
Q 030819 153 IAKSRAE 159 (171)
Q Consensus 153 ~~~~~~~ 159 (171)
++.++..
T Consensus 133 ~a~~~~~ 139 (156)
T 3n9u_C 133 PATRQNL 139 (156)
T ss_dssp ECCHHHH
T ss_pred EcCCCcc
Confidence 9986643
No 41
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.86 E-value=5e-21 Score=126.32 Aligned_cols=86 Identities=26% Similarity=0.434 Sum_probs=80.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC---eEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDG---RVI 149 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g---~~i 149 (171)
..++.++|||+|||+++++++|+++|.+||.|..+.+..++ +|.++|||||+|.+.++|++|++.|||..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44568999999999999999999999999999999999998 89999999999999999999999999999988 999
Q ss_pred EEEEecCcHH
Q 030819 150 FVEIAKSRAE 159 (171)
Q Consensus 150 ~v~~~~~~~~ 159 (171)
+|.+++++..
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987654
No 42
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.86 E-value=4.3e-21 Score=127.03 Aligned_cols=84 Identities=25% Similarity=0.470 Sum_probs=79.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+.+++++|+++|.+||.|..+.++.++ +|+++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345668899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEecC
Q 030819 152 EIAKS 156 (171)
Q Consensus 152 ~~~~~ 156 (171)
.++.+
T Consensus 103 ~~a~s 107 (107)
T 3ulh_A 103 QLVTS 107 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99863
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=128.24 Aligned_cols=87 Identities=38% Similarity=0.672 Sum_probs=81.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCcHH
Q 030819 153 IAKSRAE 159 (171)
Q Consensus 153 ~~~~~~~ 159 (171)
+++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987653
No 44
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=127.19 Aligned_cols=86 Identities=20% Similarity=0.415 Sum_probs=80.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeE-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE---
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLV-EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRV--- 148 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~--- 148 (171)
...+.++|||+|||+++++++|+++|.+||.|. .+.++.++.++.++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 445688999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred -EEEEEecCcH
Q 030819 149 -IFVEIAKSRA 158 (171)
Q Consensus 149 -i~v~~~~~~~ 158 (171)
|+|.|+++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997653
No 45
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-21 Score=131.02 Aligned_cols=86 Identities=22% Similarity=0.417 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
....++|||+|||+++++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|++|+ .|||..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999999988999999999999999999999 8999999999999999
Q ss_pred ecCcHHH
Q 030819 154 AKSRAEL 160 (171)
Q Consensus 154 ~~~~~~~ 160 (171)
++++...
T Consensus 101 a~~~~~~ 107 (114)
T 2cq4_A 101 SQAEKNR 107 (114)
T ss_dssp HHHHHHH
T ss_pred cCCCccC
Confidence 9876644
No 46
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=3.3e-21 Score=133.41 Aligned_cols=89 Identities=22% Similarity=0.414 Sum_probs=83.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.....+.++|||+|||+++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 44566789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEEecCcHH
Q 030819 151 VEIAKSRAE 159 (171)
Q Consensus 151 v~~~~~~~~ 159 (171)
|.+++++..
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987653
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=1.4e-21 Score=129.17 Aligned_cols=88 Identities=25% Similarity=0.425 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL---DGRV 148 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i---~g~~ 148 (171)
....+.++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+..|||..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456788999999999999999999999999999999999998999999999999999999999999999987 8999
Q ss_pred EEEEEecCcHH
Q 030819 149 IFVEIAKSRAE 159 (171)
Q Consensus 149 i~v~~~~~~~~ 159 (171)
|+|.++.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987653
No 48
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=5.6e-21 Score=121.92 Aligned_cols=81 Identities=32% Similarity=0.590 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 45678899999999999999999999999999999999999899999999999999999999997 58889999999998
Q ss_pred Ee
Q 030819 153 IA 154 (171)
Q Consensus 153 ~~ 154 (171)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=126.17 Aligned_cols=87 Identities=26% Similarity=0.570 Sum_probs=80.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.....+.++|||+|||+++++++|+++|.+||.|..+.+..+ ++.++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345567899999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred EEEecCcHH
Q 030819 151 VEIAKSRAE 159 (171)
Q Consensus 151 v~~~~~~~~ 159 (171)
|.+++++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999987654
No 50
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.86 E-value=2.6e-22 Score=141.89 Aligned_cols=141 Identities=22% Similarity=0.326 Sum_probs=108.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCC-----------------
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPS----------------- 67 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 67 (171)
+.|||+|+++++++..+...|...+++.. .........++.++.+++.+..+..
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~---------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIES---------CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEE---------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEE---------EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 57999999999999999999988876622 1111111122333333333322211
Q ss_pred -----CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 030819 68 -----PHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (171)
Q Consensus 68 -----~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~ 142 (171)
..+........+|||+|||+.+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||.
T Consensus 74 l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 74 IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 011123345689999999999999999999999999999999999889999999999999999999999999999
Q ss_pred eeCCeE--EEEEEe
Q 030819 143 FLDGRV--IFVEIA 154 (171)
Q Consensus 143 ~i~g~~--i~v~~~ 154 (171)
.+.|+. |+|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999964 888875
No 51
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.4e-21 Score=128.78 Aligned_cols=88 Identities=23% Similarity=0.415 Sum_probs=82.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLV--------EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF 143 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~ 143 (171)
....+.++|||+|||+++++++|+++|.+||.|. .+.+..++.+++++|||||+|.+.++|++|++.|||..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999999 69999998899999999999999999999999999999
Q ss_pred eCCeEEEEEEecCcHH
Q 030819 144 LDGRVIFVEIAKSRAE 159 (171)
Q Consensus 144 i~g~~i~v~~~~~~~~ 159 (171)
+.|+.|+|.+++++..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 52
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.5e-22 Score=129.77 Aligned_cols=90 Identities=24% Similarity=0.536 Sum_probs=83.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
.+.++|||+|||+.+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCcHHHHHhh
Q 030819 155 KSRAELRQAF 164 (171)
Q Consensus 155 ~~~~~~~~~~ 164 (171)
.++.......
T Consensus 86 ~~~~~~~~~~ 95 (104)
T 1p1t_A 86 ASEKNKEELK 95 (104)
T ss_dssp TCTTHHHHHH
T ss_pred CCccchhhhc
Confidence 9877665433
No 53
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.4e-21 Score=126.29 Aligned_cols=84 Identities=25% Similarity=0.516 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKI---ANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
.+.++|||+|||+++++++|+++|++||.|..+.+..++. ++.++|||||+|.+.++|++|+..|||..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5678999999999999999999999999999999998876 5689999999999999999999999999999999999
Q ss_pred EEecCcH
Q 030819 152 EIAKSRA 158 (171)
Q Consensus 152 ~~~~~~~ 158 (171)
.+++++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998764
No 54
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=7.3e-21 Score=125.21 Aligned_cols=85 Identities=25% Similarity=0.508 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+|| |..+.++.++.+++++|||||+|.+.++|++|+ .|||..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 999999999989999999999999999999999 899999999999999
Q ss_pred EecCcHH
Q 030819 153 IAKSRAE 159 (171)
Q Consensus 153 ~~~~~~~ 159 (171)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987653
No 55
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.86 E-value=8.4e-23 Score=145.59 Aligned_cols=142 Identities=20% Similarity=0.264 Sum_probs=106.0
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccC--CCCCCCCCCCCCCC---------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQG--RGRGACFPLACLPP--------------- 66 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------------- 66 (171)
.+.|||+|+++++++..+...|...+++..-.. ......+ ++++++++.+..+.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i---------~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINV---------LRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE---------EEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE---------EecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 468999999999999999999998877632111 1111010 22222222221110
Q ss_pred -----------CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 030819 67 -----------SPHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRA 135 (171)
Q Consensus 67 -----------~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 135 (171)
............+|||+|||+.+++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|.+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 74 PGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp TTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHH
T ss_pred cCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHH
Confidence 00111233467899999999999999999999999999999999987 799999999999999999999
Q ss_pred HHHhCCceeC---CeEEEEEEec
Q 030819 136 IEGMHGKFLD---GRVIFVEIAK 155 (171)
Q Consensus 136 l~~l~g~~i~---g~~i~v~~~~ 155 (171)
+..|||..+. +++|.|.|+.
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHhcCCcccCCCCCCeEEEecC
Confidence 9999999875 4899999873
No 56
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=124.46 Aligned_cols=83 Identities=29% Similarity=0.421 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+.+++++|+++|++||.|..+.+..++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 44567899999999999999999999999999999999998 59999999999999999999999999999999999999
Q ss_pred EecC
Q 030819 153 IAKS 156 (171)
Q Consensus 153 ~~~~ 156 (171)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9874
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.86 E-value=2.2e-21 Score=132.94 Aligned_cols=87 Identities=34% Similarity=0.589 Sum_probs=81.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
...++.++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|+..|+|..+.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEecCcH
Q 030819 152 EIAKSRA 158 (171)
Q Consensus 152 ~~~~~~~ 158 (171)
.+++++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998754
No 58
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-21 Score=128.38 Aligned_cols=87 Identities=10% Similarity=0.242 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
..+.++|||+|||+++++++|+++|++||.|.++.++.++. |.++|||||+|.+.++|.+|+. ++|..+.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999986 9999999999999999999999 899999999999999
Q ss_pred ecCcHHHHH
Q 030819 154 AKSRAELRQ 162 (171)
Q Consensus 154 ~~~~~~~~~ 162 (171)
+......+.
T Consensus 86 ~~~~~~~k~ 94 (103)
T 1s79_A 86 KDDYFAKKN 94 (103)
T ss_dssp HHHHHHHHH
T ss_pred chHHHHHHH
Confidence 887655543
No 59
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.7e-21 Score=125.41 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
..+..++|||+|||+++++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44557899999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred EecCc
Q 030819 153 IAKSR 157 (171)
Q Consensus 153 ~~~~~ 157 (171)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.4e-21 Score=125.13 Aligned_cols=85 Identities=20% Similarity=0.433 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIA-NRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
...+.++|||+|||+++++++|+++|..|| |..+.++.++.+ |+++|||||+|.+.++|++|| .|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999999987 999999999999999999999 89999999999999
Q ss_pred EEecCcHH
Q 030819 152 EIAKSRAE 159 (171)
Q Consensus 152 ~~~~~~~~ 159 (171)
.+++++..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 61
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=5.1e-21 Score=122.18 Aligned_cols=84 Identities=17% Similarity=0.451 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANR-PRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~-~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
...++|||+|||+++++++|+++|++||.|..+.+..++.++. ++|||||+|.+.++|++|+..|||..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3467999999999999999999999999999999999887766 899999999999999999999999999999999999
Q ss_pred ecCcH
Q 030819 154 AKSRA 158 (171)
Q Consensus 154 ~~~~~ 158 (171)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97653
No 62
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.85 E-value=7.6e-22 Score=129.39 Aligned_cols=88 Identities=22% Similarity=0.408 Sum_probs=75.6
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 030819 69 HSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDK-IANRPRGFAFLRYATEEESRRAIEGMHGKFLDGR 147 (171)
Q Consensus 69 ~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~ 147 (171)
.........++|||+|||+++++++|+++|++|| |.++.++.++ .+|+++|||||+|.+.++|.+|+ .|+|..+.|+
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3344567789999999999999999999999999 9999999988 58999999999999999999999 7999999999
Q ss_pred EEEEEEecCcH
Q 030819 148 VIFVEIAKSRA 158 (171)
Q Consensus 148 ~i~v~~~~~~~ 158 (171)
.|+|.+++++.
T Consensus 89 ~l~V~~a~~~~ 99 (100)
T 2j76_E 89 RIRVDVADQAQ 99 (100)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEeccCCC
Confidence 99999998753
No 63
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=126.98 Aligned_cols=86 Identities=30% Similarity=0.551 Sum_probs=80.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.....+.++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.+++ .+.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 33456789999999999999999999999999999999999998999999999999999999999999998 89999999
Q ss_pred EEEecCc
Q 030819 151 VEIAKSR 157 (171)
Q Consensus 151 v~~~~~~ 157 (171)
|.++...
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9999754
No 64
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=6.4e-21 Score=122.06 Aligned_cols=80 Identities=23% Similarity=0.576 Sum_probs=76.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKS 156 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~ 156 (171)
.++|||+|||+++++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|++|+ .|||..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999999876
Q ss_pred c
Q 030819 157 R 157 (171)
Q Consensus 157 ~ 157 (171)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 65
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=5.7e-21 Score=127.15 Aligned_cols=87 Identities=25% Similarity=0.491 Sum_probs=76.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.....+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..+ +..+.|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 445667899999999999999999999999999999999999989999999999999999999999975 5899999999
Q ss_pred EEEecCcH
Q 030819 151 VEIAKSRA 158 (171)
Q Consensus 151 v~~~~~~~ 158 (171)
|.++.++.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998764
No 66
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=128.62 Aligned_cols=84 Identities=35% Similarity=0.615 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
..+.++|||+|||+++++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCcH
Q 030819 154 AKSRA 158 (171)
Q Consensus 154 ~~~~~ 158 (171)
++++.
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98654
No 67
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=3.7e-21 Score=130.97 Aligned_cols=85 Identities=26% Similarity=0.502 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCc
Q 030819 153 IAKSR 157 (171)
Q Consensus 153 ~~~~~ 157 (171)
++.++
T Consensus 98 ~a~~~ 102 (126)
T 3ex7_B 98 WCFVR 102 (126)
T ss_dssp ESEES
T ss_pred EecCC
Confidence 98644
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.8e-20 Score=122.37 Aligned_cols=86 Identities=30% Similarity=0.606 Sum_probs=78.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.....+.++|||+|||+++++++|+++|.+||.|..+.++.++. .++|||||+|.+.++|++|+..|||..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556679999999999999999999999999999999998863 3889999999999999999999999999999999
Q ss_pred EEEecCcH
Q 030819 151 VEIAKSRA 158 (171)
Q Consensus 151 v~~~~~~~ 158 (171)
|.+++++.
T Consensus 87 v~~a~~~~ 94 (103)
T 2cq3_A 87 VNNATARV 94 (103)
T ss_dssp EEECCSSC
T ss_pred EEEcccCC
Confidence 99998765
No 69
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=6.5e-21 Score=135.72 Aligned_cols=90 Identities=22% Similarity=0.408 Sum_probs=80.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+.+++++|+.+|.+||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCcHHHHH
Q 030819 153 IAKSRAELRQ 162 (171)
Q Consensus 153 ~~~~~~~~~~ 162 (171)
|+.++...+.
T Consensus 148 ~a~~~~~~~~ 157 (165)
T 1rk8_A 148 WCFVKGPKRV 157 (165)
T ss_dssp ESEECC----
T ss_pred EecCCCCCCC
Confidence 9987665443
No 70
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-20 Score=124.60 Aligned_cols=84 Identities=21% Similarity=0.412 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|.++.+..++ +++++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 44567899999999999999999999999999999999998 69999999999999999999999999999999999999
Q ss_pred EecCc
Q 030819 153 IAKSR 157 (171)
Q Consensus 153 ~~~~~ 157 (171)
+++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98743
No 71
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8e-21 Score=127.38 Aligned_cols=88 Identities=18% Similarity=0.308 Sum_probs=81.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCe-EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQL-VEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
...+..+|||+|||+++++++|+++|..||.| ..+.++.++ +|+++|||||+|.+.++|++||.. |+..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 45567899999999999999999999999999 889999999 999999999999999999999996 999999999999
Q ss_pred EEecCcHHHHH
Q 030819 152 EIAKSRAELRQ 162 (171)
Q Consensus 152 ~~~~~~~~~~~ 162 (171)
.++.++.....
T Consensus 89 ~~a~~~~~~~~ 99 (114)
T 2cpy_A 89 HVVTLEDMREI 99 (114)
T ss_dssp EEECHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 99987765544
No 72
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.85 E-value=3.7e-20 Score=125.75 Aligned_cols=85 Identities=25% Similarity=0.453 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
....+++|||+|||+.+++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45667899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
++.+..
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997643
No 73
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=122.97 Aligned_cols=86 Identities=16% Similarity=0.306 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++. .++|||||+|.+.++|++|+..|+|..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3456789999999999999999999999999999999998863 36899999999999999999999999999999999
Q ss_pred EEecCcHH
Q 030819 152 EIAKSRAE 159 (171)
Q Consensus 152 ~~~~~~~~ 159 (171)
.+++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99987653
No 74
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=126.01 Aligned_cols=88 Identities=28% Similarity=0.522 Sum_probs=82.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456789999999999999999999999999999999999988999999999999999999999998 999999999999
Q ss_pred EEecCcHHH
Q 030819 152 EIAKSRAEL 160 (171)
Q Consensus 152 ~~~~~~~~~ 160 (171)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999877643
No 75
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=122.86 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVI 149 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i 149 (171)
..+.++|||+|||+++++++|+ ++|++||.|.++.++.++.+ +|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4457899999999999999999 99999999999999998754 7999999999999999999999999999999
Q ss_pred EEEEecCcH
Q 030819 150 FVEIAKSRA 158 (171)
Q Consensus 150 ~v~~~~~~~ 158 (171)
+|.+++++.
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999998654
No 76
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.85 E-value=4.5e-22 Score=152.58 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=114.0
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC------------------
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP------------------ 66 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 66 (171)
+.|||+++++++++..+...|...+++... ........++.++++++.+....
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~---------~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 166 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERC---------FLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT 166 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEE---------EEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 469999999999999999999887765221 11111111222222222221111
Q ss_pred -------CCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 030819 67 -------SPHSLSTCQPKTRLFVSGLSFRT-SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138 (171)
Q Consensus 67 -------~~~~~~~~~~~~~l~V~nl~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 138 (171)
.........+..+|||+|||+.+ ++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..
T Consensus 167 i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 245 (284)
T 3smz_A 167 LYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQ 245 (284)
T ss_dssp CEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHH
T ss_pred EEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHH
Confidence 11112234567899999999995 999999999999999999999988 899999999999999999999999
Q ss_pred hCCceeCCeEEEEEEecCcHHHHHhhh
Q 030819 139 MHGKFLDGRVIFVEIAKSRAELRQAFK 165 (171)
Q Consensus 139 l~g~~i~g~~i~v~~~~~~~~~~~~~~ 165 (171)
|||..+.|+.|+|.++.++...++..+
T Consensus 246 l~g~~~~g~~l~v~~a~~~~~~~~~~~ 272 (284)
T 3smz_A 246 ADGLSLGGSHLRVSFCAPGPPGRSMLA 272 (284)
T ss_dssp HTTCEETTEECEEEECCSSSCHHHHHH
T ss_pred hCCCccCCeEEEEEEecCCCcccchhh
Confidence 999999999999999998876655444
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=125.76 Aligned_cols=87 Identities=22% Similarity=0.424 Sum_probs=81.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCCeEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQG-FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF-LDGRVIF 150 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~-i~g~~i~ 150 (171)
...+.++|||+|||+++++++|+++|.+ ||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|+|.. +.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999999 99999999999999999999999999999 9999999
Q ss_pred EEEecCcHHH
Q 030819 151 VEIAKSRAEL 160 (171)
Q Consensus 151 v~~~~~~~~~ 160 (171)
|.++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999876543
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.9e-22 Score=124.93 Aligned_cols=83 Identities=18% Similarity=0.411 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999998877
Q ss_pred ecC
Q 030819 154 AKS 156 (171)
Q Consensus 154 ~~~ 156 (171)
+++
T Consensus 82 ~~s 84 (85)
T 1x4e_A 82 PSS 84 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 79
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.1e-21 Score=126.16 Aligned_cols=85 Identities=31% Similarity=0.621 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.....+.++|||+|||.++++++|+++|++||.|..+.+..++ +.++|||||+|.+.++|++|++.|+|..+.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456678999999999999999999999999999999999885 34889999999999999999999999999999999
Q ss_pred EEEecCc
Q 030819 151 VEIAKSR 157 (171)
Q Consensus 151 v~~~~~~ 157 (171)
|.+++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999875
No 80
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=2.4e-20 Score=131.49 Aligned_cols=86 Identities=24% Similarity=0.451 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
|+++..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 997643
No 81
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=1.6e-20 Score=121.01 Aligned_cols=84 Identities=24% Similarity=0.445 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.+..+ +|.++|||||+|.+.++|++|+..|+|..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999874 89999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
++++..
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 998754
No 82
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.3e-20 Score=121.44 Aligned_cols=86 Identities=26% Similarity=0.518 Sum_probs=79.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|++|+. ++..++|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 345667899999999999999999999999999999999999899999999999999999999998 477999999999
Q ss_pred EEecCcHH
Q 030819 152 EIAKSRAE 159 (171)
Q Consensus 152 ~~~~~~~~ 159 (171)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987654
No 83
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-21 Score=132.65 Aligned_cols=85 Identities=26% Similarity=0.418 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE--VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK----FLDG 146 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~----~i~g 146 (171)
...+.++|||+|||+++++++|+++|.+||.|.. |+++.|+.+|+++|||||+|.+. +|.+|+..|||. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4456789999999999999999999999999976 99999999999999999999999 999999999999 9999
Q ss_pred eEEEEEEecCcH
Q 030819 147 RVIFVEIAKSRA 158 (171)
Q Consensus 147 ~~i~v~~~~~~~ 158 (171)
+.|+|.+++++.
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998753
No 84
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.84 E-value=5e-21 Score=124.07 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
.++.++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999888888888999999999999999999999999999999999999998
Q ss_pred ecC
Q 030819 154 AKS 156 (171)
Q Consensus 154 ~~~ 156 (171)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 85
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=118.66 Aligned_cols=83 Identities=20% Similarity=0.383 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
......+|||+|||+++++++|+++|..| .|..+.++.+ .+|+++|||||+|.+.++|++|+. |||..+.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44567899999999999999999999999 9999999999 599999999999999999999999 99999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 86
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.5e-20 Score=121.82 Aligned_cols=84 Identities=20% Similarity=0.378 Sum_probs=76.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+++++++|+++|.+||.|..+.+.. ++.++|||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3455678999999999999999999999999999999855 4557899999999999999999999999999999999
Q ss_pred EEecCcH
Q 030819 152 EIAKSRA 158 (171)
Q Consensus 152 ~~~~~~~ 158 (171)
.+++++.
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9998764
No 87
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.4e-20 Score=122.74 Aligned_cols=84 Identities=25% Similarity=0.493 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL-------- 144 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i-------- 144 (171)
...+.++|||+|||+++++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|++|+..|||..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44567899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CCeEEEEEEecCc
Q 030819 145 DGRVIFVEIAKSR 157 (171)
Q Consensus 145 ~g~~i~v~~~~~~ 157 (171)
.+++|.|.|+.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999865
No 88
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=129.08 Aligned_cols=89 Identities=12% Similarity=0.324 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRV 148 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~ 148 (171)
...+..+|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|..|+..|||..+.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999999876 6999999999987743 7889999999999999999999999999999999
Q ss_pred EEEEEecCcHHHHHhh
Q 030819 149 IFVEIAKSRAELRQAF 164 (171)
Q Consensus 149 i~v~~~~~~~~~~~~~ 164 (171)
|+|.|++.+.......
T Consensus 102 l~V~~a~~~~~~~~~~ 117 (127)
T 2a3j_A 102 LVITFSETPQSQVAED 117 (127)
T ss_dssp CEEEECCCCCHHHHCC
T ss_pred EEEEEccCcchhcccc
Confidence 9999999887665433
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=128.47 Aligned_cols=83 Identities=31% Similarity=0.561 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEe
Q 030819 152 EIA 154 (171)
Q Consensus 152 ~~~ 154 (171)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 90
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=2.2e-20 Score=131.81 Aligned_cols=86 Identities=34% Similarity=0.632 Sum_probs=81.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
......+|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+++++.
T Consensus 146 ~a~~~~ 151 (158)
T 2kn4_A 146 MARYGR 151 (158)
T ss_dssp EECCSS
T ss_pred ECCCCC
Confidence 998754
No 91
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=126.45 Aligned_cols=85 Identities=34% Similarity=0.608 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
..+.++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++||.. ++..+.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999997 99999999999999
Q ss_pred ecCcHH
Q 030819 154 AKSRAE 159 (171)
Q Consensus 154 ~~~~~~ 159 (171)
+.++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 987754
No 92
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.84 E-value=3.5e-20 Score=125.00 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ---LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVI 149 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i 149 (171)
.....++|||+|||+++++++|+++|..||. |..+.++.++. |+++|||||+|.+.++|++||+ +|+..+.|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999999 89999999985 9999999999999999999999 99999999999
Q ss_pred EEEEecCcHHH
Q 030819 150 FVEIAKSRAEL 160 (171)
Q Consensus 150 ~v~~~~~~~~~ 160 (171)
+|.++..+...
T Consensus 91 ~V~~a~~~~~~ 101 (118)
T 2db1_A 91 EVFKSHRTEMD 101 (118)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999766533
No 93
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=124.61 Aligned_cols=81 Identities=16% Similarity=0.322 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG--KFLDGRVIF 150 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g--~~i~g~~i~ 150 (171)
.+.+.++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++.|++ ..+.|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567889999999999999999999999999999999875 49999999999999999998864 689999999
Q ss_pred EEEecCcHH
Q 030819 151 VEIAKSRAE 159 (171)
Q Consensus 151 v~~~~~~~~ 159 (171)
|.+++++..
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999987653
No 94
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=4.8e-21 Score=118.95 Aligned_cols=75 Identities=29% Similarity=0.604 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 79 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
+|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++ ++|..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 9999999999999875
No 95
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=128.39 Aligned_cols=86 Identities=14% Similarity=0.297 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
......+|||+|||+++++++|+++|..||.|..+.++.+..+|+++|||||+|.+.++|++||. |||..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999999886666666699999999999999999999999 99999999999999
Q ss_pred EecCcHH
Q 030819 153 IAKSRAE 159 (171)
Q Consensus 153 ~~~~~~~ 159 (171)
++..+..
T Consensus 100 ~a~~~~~ 106 (124)
T 1wel_A 100 PITKKGM 106 (124)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987653
No 96
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=121.33 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--eCCeEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF--LDGRVI 149 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~--i~g~~i 149 (171)
...+++++|||+|||+++++++|+++|++||.|.++.+++. ||+|||+|.+.++|.+|++.|++.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 35567899999999999999999999999999999998754 4899999999999999999999875 789999
Q ss_pred EEEEecCc
Q 030819 150 FVEIAKSR 157 (171)
Q Consensus 150 ~v~~~~~~ 157 (171)
.|.+++++
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999875
No 97
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.83 E-value=4.4e-22 Score=142.25 Aligned_cols=139 Identities=17% Similarity=0.223 Sum_probs=104.5
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCC----------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPS---------------- 67 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 67 (171)
.+.|||+|+++++++..+...|...+.... ..+.....++.++++++.+..+..
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~----------~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 82 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKND----------LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE 82 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT----------CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcce----------EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeE
Confidence 367999999999999988877766544311 011112233444444443332211
Q ss_pred -------CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 030819 68 -------PHSLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (171)
Q Consensus 68 -------~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 140 (171)
+.......+..+|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..||
T Consensus 83 l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 83 IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp EEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred EEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 1112234467899999999999999999999999988766 4488999999999999999999999999
Q ss_pred CceeCCeEEEEEEecCc
Q 030819 141 GKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 141 g~~i~g~~i~v~~~~~~ 157 (171)
|..+.|+.|+|.|++++
T Consensus 158 g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 158 GAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEETTEEEEEEECSSC
T ss_pred CCEECCeEEEEEecCCC
Confidence 99999999999999876
No 98
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.83 E-value=1.8e-20 Score=140.09 Aligned_cols=85 Identities=18% Similarity=0.411 Sum_probs=79.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFG--QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
..++|||+||++++++++|+++|.+|| .|.+|.|+.++.+|+++|||||+|.+.++|++||+.|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCcHHH
Q 030819 154 AKSRAEL 160 (171)
Q Consensus 154 ~~~~~~~ 160 (171)
+++....
T Consensus 147 a~~~~~~ 153 (229)
T 3q2s_C 147 VNKQFLS 153 (229)
T ss_dssp CCHHHHH
T ss_pred CCCCccc
Confidence 9876544
No 99
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=124.60 Aligned_cols=87 Identities=20% Similarity=0.315 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ-LVEVNLV-MDKIANRPRGFAFLRYATEEESRRAIEGMH--GKFLDGRVI 149 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~g~~~g~~fv~f~~~~~a~~al~~l~--g~~i~g~~i 149 (171)
..+.++|||+|||+++++++|+++|.+||. |..+.++ .++.+|.++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEEEecCcHHH
Q 030819 150 FVEIAKSRAEL 160 (171)
Q Consensus 150 ~v~~~~~~~~~ 160 (171)
+|.+++++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999877643
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.6e-20 Score=119.60 Aligned_cols=82 Identities=18% Similarity=0.264 Sum_probs=73.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCeE
Q 030819 71 LSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH--GKFLDGRV 148 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~--g~~i~g~~ 148 (171)
....+++++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++.|+ +..+.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 345567889999999999999999999999999999988765 5999999999999999999874 67899999
Q ss_pred EEEEEecCcH
Q 030819 149 IFVEIAKSRA 158 (171)
Q Consensus 149 i~v~~~~~~~ 158 (171)
|.|.+++++.
T Consensus 83 l~V~~a~~~~ 92 (101)
T 2cq1_A 83 IYIQYSNHKE 92 (101)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCccc
Confidence 9999998664
No 101
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=124.22 Aligned_cols=85 Identities=25% Similarity=0.413 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLR---NAFQGFGQLVEVNLVMDKIAN---RPRGFAFLRYATEEESRRAIEGMHGKFLDGR 147 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~g---~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~ 147 (171)
.....+|||+|||+++++++|+ ++|.+||.|.++.+..++.++ .++|||||+|.+.++|++|++.|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999999887644 5669999999999999999999999999999
Q ss_pred EEEEEEecCcH
Q 030819 148 VIFVEIAKSRA 158 (171)
Q Consensus 148 ~i~v~~~~~~~ 158 (171)
.|+|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 102
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=3.7e-20 Score=125.68 Aligned_cols=82 Identities=21% Similarity=0.509 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
+.++|||+|||+++++++|+++|.+||.|..+.+..++.+|.++|||||+|.+.++|++|+ .|+|..+.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999998
Q ss_pred CcH
Q 030819 156 SRA 158 (171)
Q Consensus 156 ~~~ 158 (171)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 103
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9e-21 Score=118.16 Aligned_cols=76 Identities=28% Similarity=0.587 Sum_probs=73.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
++|||+|||+++++++|+++|++||.|..+.+..++.+|+++|||||+|.+.++|++|++.++ ..++|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999 9999999999986
No 104
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=4.3e-20 Score=122.74 Aligned_cols=83 Identities=31% Similarity=0.497 Sum_probs=73.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 030819 70 SLSTCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVI 149 (171)
Q Consensus 70 ~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i 149 (171)
......+.++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|||..+.|+.|
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34456778999999999999999999999999999999987 4899999999999999999999999999999
Q ss_pred EEEEecCcHHH
Q 030819 150 FVEIAKSRAEL 160 (171)
Q Consensus 150 ~v~~~~~~~~~ 160 (171)
.|.+++++..+
T Consensus 96 ~V~~a~~~~~r 106 (108)
T 2jvo_A 96 EVVYSKLPAKR 106 (108)
T ss_dssp EEESCSCCC--
T ss_pred EEEEecCCCCC
Confidence 99999876544
No 105
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=123.05 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 030819 73 TCQPKTRLFVSGLSFRT------SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDG 146 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g 146 (171)
.....++|||+|||+.+ ++++|+++|++||.|..+.+. +.+|+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999887 3589999999999999999999999999999999
Q ss_pred e-EEEEEEecCc
Q 030819 147 R-VIFVEIAKSR 157 (171)
Q Consensus 147 ~-~i~v~~~~~~ 157 (171)
+ .|+|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998754
No 106
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=119.12 Aligned_cols=82 Identities=22% Similarity=0.473 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.| .++.+ .+++++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45678999999999999999999999999977 55666 489999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+++++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998764
No 107
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=9.2e-20 Score=118.82 Aligned_cols=82 Identities=24% Similarity=0.488 Sum_probs=72.2
Q ss_pred CCCCCCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 030819 69 HSLSTCQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGR 147 (171)
Q Consensus 69 ~~~~~~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~ 147 (171)
......++.++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3345667789999999998 99999999999999999999883 58999999999999999999999999999
Q ss_pred EEEEEEecCcH
Q 030819 148 VIFVEIAKSRA 158 (171)
Q Consensus 148 ~i~v~~~~~~~ 158 (171)
.|+|.+++++.
T Consensus 86 ~l~V~~a~~~~ 96 (97)
T 2xnq_A 86 KLILEVSSSNA 96 (97)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEecCCCC
Confidence 99999998753
No 108
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.7e-20 Score=120.42 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK--FLDGRVIF 150 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~--~i~g~~i~ 150 (171)
..++.++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.|++. .+.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4466789999999999999999999999999999998764 489999999999999999988765 48999999
Q ss_pred EEEecCcHH
Q 030819 151 VEIAKSRAE 159 (171)
Q Consensus 151 v~~~~~~~~ 159 (171)
|.+++.+..
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999987653
No 109
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.3e-20 Score=120.47 Aligned_cols=84 Identities=21% Similarity=0.357 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE-VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
......+|||+|||+++++++|+++|..||.|.. +.++.+ .+|+++|||||+|.+.++|++||.. ++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 4456789999999999999999999999999987 888888 5999999999999999999999997 999999999999
Q ss_pred EEecCcH
Q 030819 152 EIAKSRA 158 (171)
Q Consensus 152 ~~~~~~~ 158 (171)
.++..+.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987543
No 110
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=9.3e-21 Score=130.78 Aligned_cols=86 Identities=34% Similarity=0.632 Sum_probs=81.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+..|+|..+.|+.|+|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
++++..
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998754
No 111
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1.2e-19 Score=115.02 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
.+..|||+||++.+++++|+++|.+||+|.++.+.. ++|||||+|.+.++|++|++.||+..+.|+.|+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 46999999999999999999999999999999999993
No 112
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=118.72 Aligned_cols=85 Identities=33% Similarity=0.603 Sum_probs=77.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+++++++|+++|..|+ .+.++.++.++.++|||||+|.+.++|++|+..|||..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456789999999999999999999999874 6777888889999999999999999999999999999999999999
Q ss_pred EEecCcHH
Q 030819 152 EIAKSRAE 159 (171)
Q Consensus 152 ~~~~~~~~ 159 (171)
.+++++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987654
No 113
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.82 E-value=3.7e-20 Score=127.82 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ---LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVI 149 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i 149 (171)
.....++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|++|++ +|+..+.|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 4456789999999999999999999999999 89999999995 9999999999999999999999 99999999999
Q ss_pred EEEEecCcHHH
Q 030819 150 FVEIAKSRAEL 160 (171)
Q Consensus 150 ~v~~~~~~~~~ 160 (171)
.|.++.++...
T Consensus 118 ~V~~a~~~e~~ 128 (136)
T 2hgl_A 118 EVFKSHRTEMD 128 (136)
T ss_dssp EEEECCHHHHH
T ss_pred EEEECChHHHH
Confidence 99998766533
No 114
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=124.31 Aligned_cols=87 Identities=15% Similarity=0.246 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ---LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVI 149 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i 149 (171)
......+|||+|||+++++++|+++|..||. |..+.++.++. |+++|||||+|.+.++|++||. +++..+.|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4566889999999999999999999999988 89999999985 9999999999999999999999 99999999999
Q ss_pred EEEEecCcHHHH
Q 030819 150 FVEIAKSRAELR 161 (171)
Q Consensus 150 ~v~~~~~~~~~~ 161 (171)
+|.++.++...+
T Consensus 85 ~V~~a~~~~~~~ 96 (107)
T 2lmi_A 85 EVYEINNEDVDA 96 (107)
T ss_dssp CCEECCHHHHHH
T ss_pred EEEECCHHHHHH
Confidence 999998766443
No 115
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.82 E-value=3.6e-21 Score=123.58 Aligned_cols=82 Identities=26% Similarity=0.553 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
++|||+|||+++++++|+++|++||.|.++.+..++.+|.++|||||+|.+.+ |.+|+..|||..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999999876
Q ss_pred HHH
Q 030819 158 AEL 160 (171)
Q Consensus 158 ~~~ 160 (171)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 116
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.3e-20 Score=121.90 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEE
Q 030819 74 CQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK--FLDGRVIF 150 (171)
Q Consensus 74 ~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~--~i~g~~i~ 150 (171)
..++++|||+|||+ ++++++|+++|++||.|.++.++.++ |||||+|.+.++|.+|++.|++. .+.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34688999999999 99999999999999999999998764 89999999999999999999865 59999999
Q ss_pred EEEecCcH
Q 030819 151 VEIAKSRA 158 (171)
Q Consensus 151 v~~~~~~~ 158 (171)
|.+++...
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998654
No 117
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=2.2e-20 Score=121.41 Aligned_cols=86 Identities=20% Similarity=0.430 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRV 148 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~ 148 (171)
..+++++|||+|||+++++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34568899999999999999999 9999999999998863 6778899999999999999999999999999999
Q ss_pred EEEEEecCcHHHH
Q 030819 149 IFVEIAKSRAELR 161 (171)
Q Consensus 149 i~v~~~~~~~~~~ 161 (171)
|+|.+++++....
T Consensus 81 l~v~~a~~~~~~~ 93 (97)
T 1nu4_A 81 MRIQYAKTDSDII 93 (97)
T ss_dssp CEEEECSSCCTHH
T ss_pred EEEEEccCCCccc
Confidence 9999999876554
No 118
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=114.61 Aligned_cols=77 Identities=29% Similarity=0.468 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM-HGKFLDGRVIFV 151 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l-~g~~i~g~~i~v 151 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.+..+ +|||||+|.+.++|.+|+..| +|..+.|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 4566789999999999999999999999999999999864 489999999999999999998 999999999999
Q ss_pred EEec
Q 030819 152 EIAK 155 (171)
Q Consensus 152 ~~~~ 155 (171)
.|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 119
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.82 E-value=1e-20 Score=145.04 Aligned_cols=139 Identities=15% Similarity=0.195 Sum_probs=113.2
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL------------ 71 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 71 (171)
.+.|||+|+++++++..+...|...+ +.. ....+.++++++.+..+..+..+
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~---------------~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 85 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKY---------------CFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRER 85 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEE---------------EEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEE---------------EEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCe
Confidence 36799999999999999999998866 311 11134455555555443322110
Q ss_pred ----CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 030819 72 ----STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGR 147 (171)
Q Consensus 72 ----~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~ 147 (171)
...+...+|||+|||+++++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|+|..+.|+
T Consensus 86 ~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 86 ELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp ECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 1234568999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EEEEEEecCcH
Q 030819 148 VIFVEIAKSRA 158 (171)
Q Consensus 148 ~i~v~~~~~~~ 158 (171)
.|.|.++.+..
T Consensus 166 ~i~v~~a~~~~ 176 (284)
T 3smz_A 166 TLYVHWTDAGQ 176 (284)
T ss_dssp ECEEEECCGGG
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 120
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.82 E-value=1.6e-19 Score=133.36 Aligned_cols=89 Identities=21% Similarity=0.438 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
+..+.++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|+..+++..+.|+.|++.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcHHHH
Q 030819 153 IAKSRAELR 161 (171)
Q Consensus 153 ~~~~~~~~~ 161 (171)
++.......
T Consensus 91 ~~~~~~~~~ 99 (213)
T 4f02_A 91 WSQRDPSLR 99 (213)
T ss_dssp ECCCCTHHH
T ss_pred ccccccccc
Confidence 988665443
No 121
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8e-20 Score=121.31 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-----eE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDG-----RV 148 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g-----~~ 148 (171)
....++|||+|||+++++++|+++|.+||.|..+.++.+ |||||+|.+.++|++||+.|||..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 355789999999999999999999999999999999875 799999999999999999999999999 99
Q ss_pred EEEEEecCcHHH
Q 030819 149 IFVEIAKSRAEL 160 (171)
Q Consensus 149 i~v~~~~~~~~~ 160 (171)
|+|.++.++...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999886543
No 122
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-21 Score=125.93 Aligned_cols=84 Identities=23% Similarity=0.305 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+..+|||+|||+++++++|+++|.+||.|.. .++.++.+|.++|||||+|.+.++|++|++ |||..+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 4456789999999999999999999999999887 666777789999999999999999999999 99999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+++++.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 998764
No 123
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=5.3e-20 Score=122.76 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
.+....+|||+|||+++++++|+++|++|| .|..+.+.. ..++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344578999999999999999999999999 899988753 247899999999999999999999999999999999
Q ss_pred EEecCcHHH
Q 030819 152 EIAKSRAEL 160 (171)
Q Consensus 152 ~~~~~~~~~ 160 (171)
.+++.....
T Consensus 100 ~~a~~~p~~ 108 (111)
T 2jvr_A 100 ERDDNPPPI 108 (111)
T ss_dssp EESCC----
T ss_pred EECCCCCCC
Confidence 999866543
No 124
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=122.14 Aligned_cols=81 Identities=16% Similarity=0.318 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG--KFLDGRVIF 150 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g--~~i~g~~i~ 150 (171)
..+++++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++.|++ ..+.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456789999999999999999999999999999999876 49999999999999999998874 579999999
Q ss_pred EEEecCcHH
Q 030819 151 VEIAKSRAE 159 (171)
Q Consensus 151 v~~~~~~~~ 159 (171)
|.+++++..
T Consensus 101 V~~a~~k~~ 109 (119)
T 2ad9_A 101 IQFSNHKEL 109 (119)
T ss_dssp EEECSSSSC
T ss_pred EEEccCCCC
Confidence 999987653
No 125
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=120.37 Aligned_cols=83 Identities=20% Similarity=0.369 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
....+|||+|||+++++++|+++|+.| .|..+.++.++ .|+++|||||+|.+.++|++|| .+|+..+.|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 445799999999999999999999999 89999999998 5999999999999999999999 59999999999999988
Q ss_pred cCcHHH
Q 030819 155 KSRAEL 160 (171)
Q Consensus 155 ~~~~~~ 160 (171)
..+.-.
T Consensus 91 ~~~~~~ 96 (109)
T 2dnn_A 91 TERQWV 96 (109)
T ss_dssp CHHHHH
T ss_pred Cccchh
Confidence 765433
No 126
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.3e-20 Score=124.25 Aligned_cols=87 Identities=24% Similarity=0.433 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.+..+..+++++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999998433222222278899999999999999999999999999999999999
Q ss_pred EecCcHH
Q 030819 153 IAKSRAE 159 (171)
Q Consensus 153 ~~~~~~~ 159 (171)
+++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9987653
No 127
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=119.58 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
......+|||+|||+++++++|+++|..||. ..+.++.++ +|+++|||||+|.+.++|++||+ +|+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 4456789999999999999999999999995 599999998 99999999999999999999995 79999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887543
No 128
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=1.7e-19 Score=120.81 Aligned_cols=82 Identities=15% Similarity=0.353 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
++++++|||+|||+++++++|+++|+.||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999865 45589999999999999999999999999999999999
Q ss_pred ecCcH
Q 030819 154 AKSRA 158 (171)
Q Consensus 154 ~~~~~ 158 (171)
+.++.
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98644
No 129
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.5e-19 Score=115.88 Aligned_cols=80 Identities=33% Similarity=0.517 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC--CeEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD--GRVIF 150 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~--g~~i~ 150 (171)
..++.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.|||..+. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998754 589999999999999999999999999 99999
Q ss_pred EEEecCcH
Q 030819 151 VEIAKSRA 158 (171)
Q Consensus 151 v~~~~~~~ 158 (171)
|.+++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 130
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=3.1e-19 Score=128.44 Aligned_cols=85 Identities=25% Similarity=0.453 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...++++|||+|||+.+++++|+++|.+||.|..|.+..++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997654
No 131
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=117.46 Aligned_cols=80 Identities=30% Similarity=0.453 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.+..+ +|||||+|.+.++|++|++.|+|..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 4456789999999999999999999999999999998755 4899999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+++++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 998764
No 132
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=115.37 Aligned_cols=79 Identities=23% Similarity=0.501 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.+. +|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567899999999999999999999999999999986 4899999999999999999999999999999999
Q ss_pred EecCcHH
Q 030819 153 IAKSRAE 159 (171)
Q Consensus 153 ~~~~~~~ 159 (171)
+++++..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 133
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=120.67 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCeEE
Q 030819 73 TCQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG--KFLDGRVI 149 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g--~~i~g~~i 149 (171)
...++++|||+|||++ +++++|+++|++||.|.++.+++. +|||||+|.+.++|..|++.|++ ..+.|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4556889999999998 999999999999999999999753 59999999999999999998865 45899999
Q ss_pred EEEEecCcHH
Q 030819 150 FVEIAKSRAE 159 (171)
Q Consensus 150 ~v~~~~~~~~ 159 (171)
.|.+++.+..
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999986643
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-20 Score=116.84 Aligned_cols=73 Identities=19% Similarity=0.365 Sum_probs=67.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 030819 77 KTRLFVSGLSFRT------SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGR-VI 149 (171)
Q Consensus 77 ~~~l~V~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~-~i 149 (171)
+++|||+|||+.+ ++++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|.+|+..|||..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999887 45899999999999999999999999999999998 88
Q ss_pred EE
Q 030819 150 FV 151 (171)
Q Consensus 150 ~v 151 (171)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 135
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=116.37 Aligned_cols=81 Identities=21% Similarity=0.381 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
.....++|||+|||+++++++|+++|.+||.|. +.++. +.++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445578999999999999999999999999996 66654 3577999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+++++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
No 136
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.81 E-value=2.5e-20 Score=141.71 Aligned_cols=137 Identities=23% Similarity=0.235 Sum_probs=109.6
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC-------------
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL------------- 71 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 71 (171)
+.|||+|+++++++..+...|...+++.. ....+.++++++.+..+..+..+
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~---------------v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSE---------------VFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSE---------------EEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEE---------------EEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 57999999999999999999999887722 11123456666666544322111
Q ss_pred ---CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceeC--
Q 030819 72 ---STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG-KFLD-- 145 (171)
Q Consensus 72 ---~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g-~~i~-- 145 (171)
....++.+|||+|||+.+++++|+++|..||.|..+.++.+. +|.++|||||+|.+.++|.+|+..|++ ..+.
T Consensus 88 l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 88 LRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp CEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred eEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 122356799999999999999999999999999999999995 999999999999999999999999954 4444
Q ss_pred -CeEEEEEEecCc
Q 030819 146 -GRVIFVEIAKSR 157 (171)
Q Consensus 146 -g~~i~v~~~~~~ 157 (171)
+++|.|.++.+.
T Consensus 167 ~~r~i~v~~~~~~ 179 (261)
T 3sde_A 167 TPRPVIVEPMEQF 179 (261)
T ss_dssp SCCBCEEEECCCE
T ss_pred CCceEEEeecccc
Confidence 899999998755
No 137
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-19 Score=118.07 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
....++|||+|||.++++++|+++|.+||.|.++.+.. ++|||||+|.+.++|.+|+..|||..++|+.|+|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34578999999999999999999999999999999873 459999999999999999999999999999999999
Q ss_pred ecCc
Q 030819 154 AKSR 157 (171)
Q Consensus 154 ~~~~ 157 (171)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9864
No 138
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.80 E-value=1.9e-20 Score=144.09 Aligned_cols=142 Identities=19% Similarity=0.221 Sum_probs=104.6
Q ss_pred eeeecCceeecccchhhcccCCcCC-CCCCCCccccccccccccccccCCCCCCCCCCCCC-------------------
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHS-PAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACL------------------- 64 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 64 (171)
+.|||++++++++...+...|...+ ++....... .. .+..++++++.+..
T Consensus 118 ~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~---------~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 187 (292)
T 2ghp_A 118 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS---------LR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY 187 (292)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------------CCEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe---------CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 5799999999999999999999887 553211100 00 01122222222211
Q ss_pred --------CCCCCC--CCCCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeecCC-CCCcceEEEEEeCCHHHH
Q 030819 65 --------PPSPHS--LSTCQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKI-ANRPRGFAFLRYATEEES 132 (171)
Q Consensus 65 --------~~~~~~--~~~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~-~g~~~g~~fv~f~~~~~a 132 (171)
+..... .....+..+|||+|||+. +++++|+++|..||.|..+.+..+.. +|.++|||||+|.+.++|
T Consensus 188 ~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A 267 (292)
T 2ghp_A 188 TLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 267 (292)
T ss_dssp ECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHH
T ss_pred EEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHH
Confidence 111100 124456789999999999 99999999999999999999999885 499999999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEEecCc
Q 030819 133 RRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 133 ~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
.+|+ .|||..+.|+.|.|.|++++
T Consensus 268 ~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 268 ERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999 99999999999999999876
No 139
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=2.9e-20 Score=115.30 Aligned_cols=75 Identities=32% Similarity=0.583 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 79 RLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 79 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
+|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999899999999999999999999999 5899999999999875
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=117.93 Aligned_cols=82 Identities=21% Similarity=0.446 Sum_probs=74.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+++++++|+++|..||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345567899999999999999999999999988766 237899999999999999999999999999999999999
Q ss_pred EEecCcH
Q 030819 152 EIAKSRA 158 (171)
Q Consensus 152 ~~~~~~~ 158 (171)
.++.++.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9998764
No 141
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-21 Score=129.44 Aligned_cols=88 Identities=25% Similarity=0.413 Sum_probs=81.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVE--------VNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD 145 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~ 145 (171)
..+.++|||+|||+++++++|+++|.+||.|.. +.++.++.++.++|||||+|.+.++|++|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356789999999999999999999999999998 899999889999999999999999999999999999999
Q ss_pred CeEEEEEEecCcHHHH
Q 030819 146 GRVIFVEIAKSRAELR 161 (171)
Q Consensus 146 g~~i~v~~~~~~~~~~ 161 (171)
|+.|+|.+++++....
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999998876553
No 142
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-18 Score=113.17 Aligned_cols=79 Identities=30% Similarity=0.544 Sum_probs=72.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGF--GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVI 149 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i 149 (171)
....+.++|||+|||+.+++++|+++|.+| |.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345567899999999999999999999999 899988764 4799999999999999999999999999999
Q ss_pred EEEEecCcH
Q 030819 150 FVEIAKSRA 158 (171)
Q Consensus 150 ~v~~~~~~~ 158 (171)
+|.+++++.
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999998765
No 143
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=117.88 Aligned_cols=82 Identities=22% Similarity=0.558 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
.....++|||+|||+.+++++|+++|.+||.|..+.+..+ +|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999876 4899999999999999999999999999999999
Q ss_pred EecCcHHH
Q 030819 153 IAKSRAEL 160 (171)
Q Consensus 153 ~~~~~~~~ 160 (171)
|++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99887643
No 144
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=9.3e-19 Score=123.47 Aligned_cols=83 Identities=28% Similarity=0.505 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
+.++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36799999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CcH
Q 030819 156 SRA 158 (171)
Q Consensus 156 ~~~ 158 (171)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 145
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.1e-19 Score=120.47 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=73.4
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 030819 78 TRLFVSGL----SFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYAT----EEE----SRRAIE--GMHGKF 143 (171)
Q Consensus 78 ~~l~V~nl----~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~----~~~----a~~al~--~l~g~~ 143 (171)
..|||+|| |+.+++.+|+.+|+.||+|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 323 888888 789999
Q ss_pred eCCeEEEEEEecCcH
Q 030819 144 LDGRVIFVEIAKSRA 158 (171)
Q Consensus 144 i~g~~i~v~~~~~~~ 158 (171)
|+|+.|+|.+.+...
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999987543
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=8e-20 Score=119.94 Aligned_cols=84 Identities=20% Similarity=0.461 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
....++|||+|||+++++++|+++|+.||.|..+.++.++ +|+++|||||+|.+.++|++|+. ++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 99999999999999999999998 99999999999999
Q ss_pred ecCcHHH
Q 030819 154 AKSRAEL 160 (171)
Q Consensus 154 ~~~~~~~ 160 (171)
+.++...
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 8766544
No 147
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=2.9e-19 Score=117.56 Aligned_cols=80 Identities=30% Similarity=0.490 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|.+||.|..+.+. +|||||+|.+.++|++|++.|||..+.|+.|+|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999999886 3699999999999999999999999999999999
Q ss_pred EecCcHHH
Q 030819 153 IAKSRAEL 160 (171)
Q Consensus 153 ~~~~~~~~ 160 (171)
+++++...
T Consensus 79 ~a~~~~~~ 86 (103)
T 2dgu_A 79 FAKPPDQK 86 (103)
T ss_dssp ECCCCCCC
T ss_pred EcCCCccc
Confidence 99876543
No 148
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=111.90 Aligned_cols=78 Identities=26% Similarity=0.533 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|++||.|..+.+.. +||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 456678999999999999999999999999999999863 599999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+++++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998764
No 149
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=5e-20 Score=128.07 Aligned_cols=86 Identities=22% Similarity=0.406 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEE------EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEV------NLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGR 147 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~------~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~ 147 (171)
..+.++|||+|||+++++++|+.+|..||.|..+ .+.. ..+|.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4567899999999999999999999999998764 1111 23789999999999999999999999999999999
Q ss_pred EEEEEEecCcHHH
Q 030819 148 VIFVEIAKSRAEL 160 (171)
Q Consensus 148 ~i~v~~~~~~~~~ 160 (171)
.|.|.++++...+
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999765433
No 150
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=120.68 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCe----EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQL----VEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
.+..+|||+|||+++++++|+++|++||.| ..+.++.++ +|+++|||||+|.+.++|++||.. |+..+.|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999975 689999886 899999999999999999999995 99999999999
Q ss_pred EEEecCcHHHH
Q 030819 151 VEIAKSRAELR 161 (171)
Q Consensus 151 v~~~~~~~~~~ 161 (171)
|..+..+...+
T Consensus 99 V~~a~~~e~~~ 109 (123)
T 2dha_A 99 LFRSTAAEVQQ 109 (123)
T ss_dssp CEEECHHHHHH
T ss_pred EEECCHHHHHH
Confidence 99987665443
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=8.1e-19 Score=124.11 Aligned_cols=83 Identities=23% Similarity=0.388 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
++++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999988
Q ss_pred CcH
Q 030819 156 SRA 158 (171)
Q Consensus 156 ~~~ 158 (171)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 152
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=5.1e-19 Score=123.90 Aligned_cols=82 Identities=24% Similarity=0.501 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34566789999999999999999999999999999999876 4699999999999999999999999999999999
Q ss_pred EEecCcH
Q 030819 152 EIAKSRA 158 (171)
Q Consensus 152 ~~~~~~~ 158 (171)
.+++++.
T Consensus 143 ~~a~~~~ 149 (150)
T 2i2y_A 143 ELSNGEK 149 (150)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998763
No 153
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.1e-19 Score=116.01 Aligned_cols=80 Identities=26% Similarity=0.547 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 73 TCQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
..++.++|||+|||+ .+++++|+++|.+||.|..+.+. +|||||+|.+.++|.+|+..|+|..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456788999999998 99999999999999999999884 589999999999999999999999999999999
Q ss_pred EEecCcHHH
Q 030819 152 EIAKSRAEL 160 (171)
Q Consensus 152 ~~~~~~~~~ 160 (171)
.+++++...
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999766543
No 154
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=1.1e-18 Score=141.59 Aligned_cols=86 Identities=30% Similarity=0.645 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
++.++.
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 998653
No 155
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=7.2e-20 Score=119.94 Aligned_cols=76 Identities=26% Similarity=0.545 Sum_probs=71.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
++|||+|||+++++++|+++|++||.|..+.+..+ ++|||||+|.+.++|++|++.|+|..+.|+.|+|.+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 5699999999999999999999999999999999999876
Q ss_pred H
Q 030819 158 A 158 (171)
Q Consensus 158 ~ 158 (171)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 156
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=1.6e-18 Score=115.21 Aligned_cols=78 Identities=22% Similarity=0.529 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 73 TCQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
.....++|||+|||++ +++++|+++|.+||.|..+.+ ++|||||+|.+.++|++|++.|+|..+.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999988 3589999999999999999999999999999999
Q ss_pred EEecCcH
Q 030819 152 EIAKSRA 158 (171)
Q Consensus 152 ~~~~~~~ 158 (171)
.++++..
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998543
No 157
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=111.17 Aligned_cols=78 Identities=26% Similarity=0.488 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|++||.|..+.+.. +||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445678999999999999999999999999999999863 599999999999999999999999999999999
Q ss_pred EecCcH
Q 030819 153 IAKSRA 158 (171)
Q Consensus 153 ~~~~~~ 158 (171)
+++++.
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998764
No 158
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-19 Score=118.44 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
..++|||+|||+++++++|+++|.+||.|..+.+.. ++|||||+|.+.++|++|+..|||..+.|+.|.|.|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998864 45899999999999999999999999999999999987
Q ss_pred C
Q 030819 156 S 156 (171)
Q Consensus 156 ~ 156 (171)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 159
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=113.65 Aligned_cols=80 Identities=28% Similarity=0.421 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQ-LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG-KFLDGRVIF 150 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g-~~i~g~~i~ 150 (171)
...+.++|||+|||+++++++|+++|.+||. |..+.+. ++|||||+|.+.++|++|++.||| ..+.|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 6655552 358999999999999999999999 999999999
Q ss_pred EEEecCcHH
Q 030819 151 VEIAKSRAE 159 (171)
Q Consensus 151 v~~~~~~~~ 159 (171)
|.+++++..
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999987653
No 160
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.78 E-value=3.7e-19 Score=136.17 Aligned_cols=78 Identities=26% Similarity=0.383 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD-GRVIFVE 152 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~-g~~i~v~ 152 (171)
..+.++|||+|||..+++++|+++|++||.|.++.+..++ +|||||+|.+.++|.+|+..|||..+. |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3467899999999999999999999999999999998654 489999999999999999999999998 9999999
Q ss_pred EecC
Q 030819 153 IAKS 156 (171)
Q Consensus 153 ~~~~ 156 (171)
|++.
T Consensus 279 ~akk 282 (282)
T 3pgw_A 279 FAKK 282 (282)
T ss_pred EecC
Confidence 9863
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=112.88 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEE-EeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVN-LVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~-~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
.....++|||+|||+++++++|+++|.+||.|..++ ++.++.++ .|||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 334578999999999999999999999999999994 77776443 4999999999999999999999999999999
Q ss_pred EEecCc
Q 030819 152 EIAKSR 157 (171)
Q Consensus 152 ~~~~~~ 157 (171)
.++.++
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999876
No 162
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=6.2e-19 Score=120.02 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeE--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLV--EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
......+|||+|||+++++++|+++|+.| .|. .+.++.++. |+++|||||+|.+.++|++|++ +++..+.|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 677 899999985 9999999999999999999998 578999999999
Q ss_pred EEEecCc
Q 030819 151 VEIAKSR 157 (171)
Q Consensus 151 v~~~~~~ 157 (171)
|..+..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=2.6e-18 Score=124.44 Aligned_cols=87 Identities=37% Similarity=0.604 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 455678999999999999999999999999999999999998999999999999999999999985 9999999999999
Q ss_pred EecCcHHH
Q 030819 153 IAKSRAEL 160 (171)
Q Consensus 153 ~~~~~~~~ 160 (171)
++.+....
T Consensus 88 ~~~~~~~~ 95 (196)
T 1l3k_A 88 RAVSREDS 95 (196)
T ss_dssp ECCC----
T ss_pred cccCcccc
Confidence 99876543
No 164
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.77 E-value=8e-20 Score=140.56 Aligned_cols=146 Identities=15% Similarity=0.195 Sum_probs=106.0
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC------------
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL------------ 71 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 71 (171)
.+.|||+++++++++..+...|...+++.. ....... ...++++++.+..+..+..+
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------v~i~~~~--~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 109 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIH---------VDVADSL--KKNFRFARIEFARYDGALAAITKTHKVVGQNE 109 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEE---------EEEEECT--TSSSEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------EEEEECC--CCCcEEEEEEECCHHHHHHHHHhCCcEeCCcE
Confidence 467999999999999999999998876621 1111111 11245555555433321110
Q ss_pred --CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 030819 72 --STCQPKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRV 148 (171)
Q Consensus 72 --~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~ 148 (171)
......++|||+|||+.+++++|+++|..|| .|..+.++.++ .|.++|||||+|.+.++|.+|+..|+|..+.|+.
T Consensus 110 i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 188 (292)
T 2ghp_A 110 IIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT 188 (292)
T ss_dssp CEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 1123578999999999999999999999999 99999999888 4889999999999999999999999999999999
Q ss_pred EEEEEecCcHHHH
Q 030819 149 IFVEIAKSRAELR 161 (171)
Q Consensus 149 i~v~~~~~~~~~~ 161 (171)
|.|.++.+.....
T Consensus 189 l~v~~a~~~~~~~ 201 (292)
T 2ghp_A 189 LVTKVSNPLEKSK 201 (292)
T ss_dssp CEEEECCCC----
T ss_pred EEEEECCCCcccc
Confidence 9999998776543
No 165
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=3.6e-18 Score=109.52 Aligned_cols=79 Identities=19% Similarity=0.388 Sum_probs=63.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--eCCeEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF--LDGRVIF 150 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~--i~g~~i~ 150 (171)
...+..+|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|++ ++|.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4566789999999999999999999999999999999764 67999999999999883 56665 4699999
Q ss_pred EEEecCcHHH
Q 030819 151 VEIAKSRAEL 160 (171)
Q Consensus 151 v~~~~~~~~~ 160 (171)
|.++.++...
T Consensus 78 v~~a~~k~~~ 87 (89)
T 3d2w_A 78 ISNAEPKHNK 87 (89)
T ss_dssp EEECC-----
T ss_pred EEEcCCCCcC
Confidence 9999887643
No 166
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=108.62 Aligned_cols=79 Identities=25% Similarity=0.480 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|| ++++++|+++|.+||.|..+.+. .++|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4456789999996 89999999999999999999884 456899999999999999999999999999999999
Q ss_pred EecCcHH
Q 030819 153 IAKSRAE 159 (171)
Q Consensus 153 ~~~~~~~ 159 (171)
+++++..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9987653
No 167
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=3.1e-18 Score=109.47 Aligned_cols=76 Identities=16% Similarity=0.298 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
...++|||+|||+++++++|+++|.+| .|.++.+. +++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356899999999999999999999999 99999884 56799999999999999999999999999999999998
Q ss_pred cCc
Q 030819 155 KSR 157 (171)
Q Consensus 155 ~~~ 157 (171)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 168
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=1.5e-17 Score=112.74 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=67.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGF-AFLRYATEEESRRAIEGMHGKFLDG--RVIFVEIA 154 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-~fv~f~~~~~a~~al~~l~g~~i~g--~~i~v~~~ 154 (171)
..|||+||++.+++++|+++|++||.|.++.+.. + .|| |||+|.+.++|..|++.|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3468999999999999999999999999999864 2 176 9999999999999999999999987 68999999
Q ss_pred cCcH
Q 030819 155 KSRA 158 (171)
Q Consensus 155 ~~~~ 158 (171)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 169
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=110.32 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
...++|||+|||+++++++|+++|.+||.|.++ +.++.+|. ||||+|.+.++|++|+. |+|..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 346799999999999999999999999999987 55665665 99999999999999999 9999999999999988
Q ss_pred cCcH
Q 030819 155 KSRA 158 (171)
Q Consensus 155 ~~~~ 158 (171)
.++.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 7654
No 170
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=3.2e-19 Score=123.47 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
......+|||+|||+++++++|+++|++|| |..+.++.++. |+++|||||+|.+.++|++|| .+|+..+.|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 345578999999999999999999999999 77999999984 999999999999999999999 689999999999999
Q ss_pred EecCcHH
Q 030819 153 IAKSRAE 159 (171)
Q Consensus 153 ~~~~~~~ 159 (171)
.+.....
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 9876543
No 171
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=114.59 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=69.6
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----CC
Q 030819 74 CQPKTRLFV--SGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL-----DG 146 (171)
Q Consensus 74 ~~~~~~l~V--~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i-----~g 146 (171)
..+..+||| +||++++++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345789999 789999999999999999999999887643 58999999999999999999999988 68
Q ss_pred eEEEEEEecCc
Q 030819 147 RVIFVEIAKSR 157 (171)
Q Consensus 147 ~~i~v~~~~~~ 157 (171)
.+|.|.+++..
T Consensus 96 ~~l~v~~a~~~ 106 (114)
T 2cq2_A 96 ITLYLNFVEKV 106 (114)
T ss_dssp EECEEEEESCC
T ss_pred cEEEEEecccC
Confidence 89999998743
No 172
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=5.7e-18 Score=119.62 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDG--RVIFVEI 153 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g--~~i~v~~ 153 (171)
...+|||+||++.+++++|+++|++||.|.++.+..+. ++|||||+|.+.++|++|++.|||..|.| +.|+|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34679999999999999999999999999999986432 46899999999999999999999999965 9999999
Q ss_pred ecCcH
Q 030819 154 AKSRA 158 (171)
Q Consensus 154 ~~~~~ 158 (171)
++++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98763
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=1.3e-17 Score=113.67 Aligned_cols=78 Identities=22% Similarity=0.403 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGF-AFLRYATEEESRRAIEGMHGKFLDG--RVIFV 151 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-~fv~f~~~~~a~~al~~l~g~~i~g--~~i~v 151 (171)
..--.|||+||++.+++++|+++|++||.|.++.+..+. +|| |||+|.+.++|++|++.|||..+.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 334578899999999999999999999999999887542 477 9999999999999999999999988 89999
Q ss_pred EEecCc
Q 030819 152 EIAKSR 157 (171)
Q Consensus 152 ~~~~~~ 157 (171)
+|+++.
T Consensus 101 ~~ak~~ 106 (130)
T 3zzy_A 101 DFSKLT 106 (130)
T ss_dssp EECSCS
T ss_pred EecCCC
Confidence 999875
No 174
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=5.9e-18 Score=119.22 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=74.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
++|||+|||+++++++|+++|++||.|.++.+..++ +++++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999998 6889999999999999999999999999999999999998654
No 175
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=108.99 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=66.7
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHhcC-CCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 030819 75 QPKTR-LFVSGLSFRTSEDS----LRNAFQGF-GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRV 148 (171)
Q Consensus 75 ~~~~~-l~V~nl~~~~~~~~----l~~~f~~~-G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~ 148 (171)
++..+ |||+|||..+++++ |+++|.+| |.|.++ ++ |+|||.|.+.++|.+|++.|+|..+.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34555 99999999999987 55899999 599987 44 99999999999999999999999999999
Q ss_pred EEEEEecCcHH
Q 030819 149 IFVEIAKSRAE 159 (171)
Q Consensus 149 i~v~~~~~~~~ 159 (171)
|+|.+++.+.+
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999987653
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.75 E-value=1e-18 Score=127.23 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD-GRVIFV 151 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~-g~~i~v 151 (171)
.++..+|||+|||..+++++|+++|..|| .|..+.+..+. +|+|||+|.+.++|.+|+..|||..+. |+.|+|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 45689999999999999999999999999 99999986542 589999999999999999999999999 999999
Q ss_pred EEecCc
Q 030819 152 EIAKSR 157 (171)
Q Consensus 152 ~~~~~~ 157 (171)
.|++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999864
No 177
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=113.82 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIA---NRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIF 150 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 150 (171)
....++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|+ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34578999999999999999999999999999 888888766 7999999999999999999999883 35555555
Q ss_pred EEEe
Q 030819 151 VEIA 154 (171)
Q Consensus 151 v~~~ 154 (171)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 5433
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=1.3e-17 Score=122.54 Aligned_cols=77 Identities=26% Similarity=0.367 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 030819 75 QPKTRLFVSGLS-FRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEI 153 (171)
Q Consensus 75 ~~~~~l~V~nl~-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 153 (171)
.++++|||+||| +.+++++|+++|++||.|.+++++.++ +|||||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 457899999999 899999999999999999999997653 69999999999999999999999999999999999
Q ss_pred ecC
Q 030819 154 AKS 156 (171)
Q Consensus 154 ~~~ 156 (171)
++.
T Consensus 77 s~~ 79 (205)
T 3tyt_A 77 SKQ 79 (205)
T ss_dssp CSC
T ss_pred ccC
Confidence 864
No 179
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=9.8e-18 Score=123.17 Aligned_cols=83 Identities=29% Similarity=0.560 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
+.++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CcH
Q 030819 156 SRA 158 (171)
Q Consensus 156 ~~~ 158 (171)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 180
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=4.3e-18 Score=114.19 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE-----E
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRV-----I 149 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~-----i 149 (171)
...++|||+|||+++++++|+++|.+||.|.++.++.+ |||||+|.+.++|++||+.|||..++|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999765 89999999999999999999999999988 8
Q ss_pred EEEEecCcH
Q 030819 150 FVEIAKSRA 158 (171)
Q Consensus 150 ~v~~~~~~~ 158 (171)
+|..+.++.
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 888776644
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=8.9e-18 Score=113.68 Aligned_cols=80 Identities=26% Similarity=0.491 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|| ++++++|+++|++||.|.++.+. .++|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456889999996 69999999999999999999885 456999999999999999999999999999999999
Q ss_pred EecCcHHH
Q 030819 153 IAKSRAEL 160 (171)
Q Consensus 153 ~~~~~~~~ 160 (171)
+++++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99877544
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=1.2e-18 Score=128.21 Aligned_cols=78 Identities=9% Similarity=0.189 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCe--EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCe----E
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQL--VEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGR----V 148 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i--~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~----~ 148 (171)
+++.+|||+|||+++++++|+++|++||.| ..+++..++ +.++|+|||+|.+.++|.+||..|||..+.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 567899999999999999999999999999 888888765 55679999999999999999999999999876 4
Q ss_pred EEEEEe
Q 030819 149 IFVEIA 154 (171)
Q Consensus 149 i~v~~~ 154 (171)
+.|.++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 665554
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=1.7e-17 Score=117.30 Aligned_cols=83 Identities=30% Similarity=0.600 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
++++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467999999999999999999999999999999999988999999999999999999999984 678999999999988
Q ss_pred CcHHH
Q 030819 156 SRAEL 160 (171)
Q Consensus 156 ~~~~~ 160 (171)
++...
T Consensus 80 ~~~~~ 84 (167)
T 2cjk_A 80 PRDEQ 84 (167)
T ss_dssp CHHHH
T ss_pred chhhc
Confidence 76543
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=2.9e-17 Score=116.68 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIAN--RPRGFAFLRYATEEESRRAIEGMHGKFLD---GRVIF 150 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g--~~~g~~fv~f~~~~~a~~al~~l~g~~i~---g~~i~ 150 (171)
+.++|||+|||+++++++|+++|++||.|.++.++.++.++ +++|||||+|.+.++|++|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999999776 89999999999999999999999998875 57788
Q ss_pred EEEecCc
Q 030819 151 VEIAKSR 157 (171)
Q Consensus 151 v~~~~~~ 157 (171)
+.++.+.
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8877644
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=4.7e-17 Score=118.55 Aligned_cols=83 Identities=11% Similarity=0.257 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAK 155 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~ 155 (171)
..++|||+|||+++++++|+++|++||.|..+++..+. +|.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999987 6999999999999999999999865 469999999999987
Q ss_pred CcHHH
Q 030819 156 SRAEL 160 (171)
Q Consensus 156 ~~~~~ 160 (171)
.-.+.
T Consensus 186 ~y~~~ 190 (193)
T 2voo_A 186 DYFAK 190 (193)
T ss_dssp TC---
T ss_pred HHHHH
Confidence 65443
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=4.5e-17 Score=107.53 Aligned_cols=84 Identities=14% Similarity=0.232 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHhcCCCeEEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 030819 75 QPKTRLFVSGLSF-----RTSEDSLRNAFQGFGQLVEVNLVMDKIA-NRPRGFAFLRYATEEESRRAIEGMHGKFLDGRV 148 (171)
Q Consensus 75 ~~~~~l~V~nl~~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~ 148 (171)
.++++|+|.|+.. +.++++|++.|++||.|.++.++.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2368999999999999999999988654 688999999999999999999999999999999
Q ss_pred EEEEEecCcH
Q 030819 149 IFVEIAKSRA 158 (171)
Q Consensus 149 i~v~~~~~~~ 158 (171)
|.|.++....
T Consensus 86 i~v~~a~~~~ 95 (105)
T 2pe8_A 86 VKACFYNLDK 95 (105)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEcCHHH
Confidence 9999997643
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.72 E-value=2.1e-18 Score=128.60 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFG-QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD-GRVIFV 151 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~-g~~i~v 151 (171)
.++..+|||+|||+.+++++|+++|.+|| .|..+.++.+ .+|||||+|.+.++|.+|+..|+|..+. |+.|+|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 35578999999999999999999999999 9999998653 2589999999999999999999999999 999999
Q ss_pred EEecCc
Q 030819 152 EIAKSR 157 (171)
Q Consensus 152 ~~~~~~ 157 (171)
.|++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999864
No 188
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=2.9e-17 Score=104.39 Aligned_cols=72 Identities=24% Similarity=0.556 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGF----G-------QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF 143 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~ 143 (171)
.+.++|||+|||+++++++|+++|.+| | .|.++.+..+ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999988755 499999999999999999 899999
Q ss_pred eCCeEEEEEE
Q 030819 144 LDGRVIFVEI 153 (171)
Q Consensus 144 i~g~~i~v~~ 153 (171)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.71 E-value=9.3e-17 Score=122.80 Aligned_cols=83 Identities=20% Similarity=0.434 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLR----NAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRV 148 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~ 148 (171)
...+.++|||+|||+++++++|+ ++|..||.|.+|.+.. +|+++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45668999999999999999976 8999999999998875 7889999999999999999999999999999999
Q ss_pred EEEEEecCcH
Q 030819 149 IFVEIAKSRA 158 (171)
Q Consensus 149 i~v~~~~~~~ 158 (171)
|+|.+++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997655
No 190
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=106.03 Aligned_cols=78 Identities=21% Similarity=0.382 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
.+.++|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45789999999999999999999999999999998754 579999999999999764321 23459999999999
Q ss_pred cCcHH
Q 030819 155 KSRAE 159 (171)
Q Consensus 155 ~~~~~ 159 (171)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 191
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=4.1e-17 Score=122.14 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCC---------CHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 030819 73 TCQPKTRLFVSGLSFRT---------SEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF 143 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~ 143 (171)
.....++|||+||+..+ ++++|+.+|++||.|.++.++.+ +|||||+|.+.++|+.|++.|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35568899999999998 79999999999999999999864 5999999999999999999999999
Q ss_pred e------------CCeEEEEEEecCcHHH
Q 030819 144 L------------DGRVIFVEIAKSRAEL 160 (171)
Q Consensus 144 i------------~g~~i~v~~~~~~~~~ 160 (171)
+ .|+.|.|.|++.....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred EeccccccccccCCCCEEEEEEccCCCCH
Confidence 9 8999999999876543
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=9.9e-17 Score=119.52 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 73 TCQPKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
..+++++|||+|||+ ++++++|+++|++||.|.++.++.++ +|||||+|.+.++|++|++.|+|..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 446789999999999 99999999999999999999998775 689999999999999999999999999999999
Q ss_pred EEecCc
Q 030819 152 EIAKSR 157 (171)
Q Consensus 152 ~~~~~~ 157 (171)
.+++..
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 998754
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=7.4e-16 Score=116.93 Aligned_cols=78 Identities=28% Similarity=0.508 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
...+.++|||+|||+++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 4456789999999999999999999999999999998654 4999999999999999999999999999999999
Q ss_pred EecC
Q 030819 153 IAKS 156 (171)
Q Consensus 153 ~~~~ 156 (171)
++.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9865
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=4.3e-17 Score=116.16 Aligned_cols=85 Identities=24% Similarity=0.310 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 72 STCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 72 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
....+.++|||+|||+++++++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|.+|++ |+|..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 34567889999999999999999999999998766 334444588899999999999999999995 9999999999999
Q ss_pred EEecCcH
Q 030819 152 EIAKSRA 158 (171)
Q Consensus 152 ~~~~~~~ 158 (171)
.++.++.
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9988653
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=113.99 Aligned_cols=77 Identities=25% Similarity=0.416 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 030819 76 PKTRLFVSGLSF-RTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIA 154 (171)
Q Consensus 76 ~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~ 154 (171)
.+++|||+|||+ ++++++|+++|+.||.|.++.+..++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998765 689999999999999999999999999999999998
Q ss_pred cCc
Q 030819 155 KSR 157 (171)
Q Consensus 155 ~~~ 157 (171)
+..
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-15 Score=99.93 Aligned_cols=82 Identities=21% Similarity=0.415 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 030819 73 TCQPKTRLFVSGLSFRTS-----------EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHG 141 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g 141 (171)
.+.++++|+|.||..... +++|+++|.+||.|.++.+ .++ .++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445688999999954432 5899999999999999965 554 3789999999999999999999999
Q ss_pred ceeCCeEEEEEEecCcH
Q 030819 142 KFLDGRVIFVEIAKSRA 158 (171)
Q Consensus 142 ~~i~g~~i~v~~~~~~~ 158 (171)
..+.|+.|+|.++.++.
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999998754
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.62 E-value=3e-16 Score=103.41 Aligned_cols=72 Identities=18% Similarity=0.498 Sum_probs=65.0
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 030819 82 VSGLSFRTSEDSLRNAF------------QGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVI 149 (171)
Q Consensus 82 V~nl~~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i 149 (171)
+.||++.+++++|++.| ++||.|.++.+..+. +++++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56778888888777766 999999999999887 58899999999999999999999999999999999
Q ss_pred EEEEe
Q 030819 150 FVEIA 154 (171)
Q Consensus 150 ~v~~~ 154 (171)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=4.2e-15 Score=98.02 Aligned_cols=84 Identities=13% Similarity=0.297 Sum_probs=72.0
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhcCCCeEEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCc
Q 030819 75 QPKTRLFVSGL--SFRTS--------EDSLRNAFQGFGQLVEVNLVMDKIA--NRPRGFAFLRYATEEESRRAIEGMHGK 142 (171)
Q Consensus 75 ~~~~~l~V~nl--~~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~--g~~~g~~fv~f~~~~~a~~al~~l~g~ 142 (171)
.+++.|.+.|+ +.++. +++|++.|++||.|.++.++.++.+ +.++|++||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45778899987 33333 3689999999999999999988754 367899999999999999999999999
Q ss_pred eeCCeEEEEEEecCcH
Q 030819 143 FLDGRVIFVEIAKSRA 158 (171)
Q Consensus 143 ~i~g~~i~v~~~~~~~ 158 (171)
.++|+.|+|.+.....
T Consensus 83 ~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDS 98 (105)
T ss_dssp EETTEECEEEEECHHH
T ss_pred EeCCCEEEEEEeCHHH
Confidence 9999999999987544
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.58 E-value=6.6e-15 Score=104.30 Aligned_cols=75 Identities=21% Similarity=0.512 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGF----G-------QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL 144 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i 144 (171)
+.++|||+|||+++++++|+++|++| | .|.++.+.. ++|||||+|.+.++|.+|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 677776644 3599999999999999999 7999999
Q ss_pred CCeEEEEEEecCc
Q 030819 145 DGRVIFVEIAKSR 157 (171)
Q Consensus 145 ~g~~i~v~~~~~~ 157 (171)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=1.9e-14 Score=96.73 Aligned_cols=82 Identities=17% Similarity=0.321 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHHHhcCCCeEEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 030819 76 PKTRLFVSGLSF--R---TSEDSLRNAFQGFGQLVEVNLVMDKI----ANRPRGFAFLRYATEEESRRAIEGMHGKFLDG 146 (171)
Q Consensus 76 ~~~~l~V~nl~~--~---~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g 146 (171)
++++|++.|+-. + --+++|++.|++||.|.++.++.++. ++.++|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999842 1 23689999999999999999998864 45788999999999999999999999999999
Q ss_pred eEEEEEEecCc
Q 030819 147 RVIFVEIAKSR 157 (171)
Q Consensus 147 ~~i~v~~~~~~ 157 (171)
+.|+|.+....
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998653
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=1.1e-14 Score=105.40 Aligned_cols=75 Identities=23% Similarity=0.538 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGF----G-------QLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL 144 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i 144 (171)
..++|||+|||+++++++|+++|..| | .|.++.+ +.++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5666655 345699999999999999999 7999999
Q ss_pred CCeEEEEEEecCc
Q 030819 145 DGRVIFVEIAKSR 157 (171)
Q Consensus 145 ~g~~i~v~~~~~~ 157 (171)
.|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998754
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-13 Score=89.62 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCcH
Q 030819 87 FRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSRA 158 (171)
Q Consensus 87 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~~ 158 (171)
..+++++|+++|++||.|.++.++ ++++|||||+|.+.++|+.|+..++ .+.|++|+|.|++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCC
Confidence 468999999999999999999987 4678999999999999999999754 4679999999998664
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.51 E-value=6.2e-14 Score=110.02 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=66.2
Q ss_pred CCCCCCCeEEEcC--CCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CC
Q 030819 72 STCQPKTRLFVSG--LSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL---DG 146 (171)
Q Consensus 72 ~~~~~~~~l~V~n--l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i---~g 146 (171)
....++.+|||+| |+..+++++|+++|++||.|.++.+.. .||||||+|.+.++|++|++.|||..+ .|
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456788999998 688999999999999999999987643 359999999999999999999999987 34
Q ss_pred e--EEEEEEec
Q 030819 147 R--VIFVEIAK 155 (171)
Q Consensus 147 ~--~i~v~~~~ 155 (171)
+ .|.|.+..
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 56667663
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=1.2e-12 Score=87.34 Aligned_cols=84 Identities=11% Similarity=0.244 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 030819 75 QPKTRLFVSGLSFRTS----------EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFL 144 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~----------~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i 144 (171)
.+++.|.+.|+=.... +++|++.|++||.|.++.+..+. .+|++||+|.+.++|.+|+..|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3466777777643221 35889999999999999886543 479999999999999999999999999
Q ss_pred CCeEEEEEEecCcHHHHH
Q 030819 145 DGRVIFVEIAKSRAELRQ 162 (171)
Q Consensus 145 ~g~~i~v~~~~~~~~~~~ 162 (171)
+|+.|.|.++....-...
T Consensus 81 ~GR~i~v~~~~~~~y~~~ 98 (114)
T 3s6e_A 81 AGKMITAAYVPLPTYHNL 98 (114)
T ss_dssp TTEECEEEEECHHHHHHH
T ss_pred CCEEEEEEEEcHHHHHHh
Confidence 999999999976554443
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=8.1e-12 Score=79.11 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=64.5
Q ss_pred CCCCCeEEEcCCC----CCCCH----HHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 030819 74 CQPKTRLFVSGLS----FRTSE----DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLD 145 (171)
Q Consensus 74 ~~~~~~l~V~nl~----~~~~~----~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~ 145 (171)
.++..||+|.-.+ .++.. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|+. |+|..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 4667789888776 23333 6899999999999999998764 8999999999999998 9999999
Q ss_pred CeEEEEEEecCc
Q 030819 146 GRVIFVEIAKSR 157 (171)
Q Consensus 146 g~~i~v~~~~~~ 157 (171)
|+.|+|.++.+.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998764
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=8.8e-12 Score=83.62 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=70.5
Q ss_pred CCCCCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CceeCC
Q 030819 71 LSTCQPKTRLFVSGLSFR-TSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYAT-EEESRRAIEGMH--GKFLDG 146 (171)
Q Consensus 71 ~~~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~-~~~a~~al~~l~--g~~i~g 146 (171)
+..-+++..|||+||+++ ++.++|+++|++||.|..|.+..+.. .|||.|.+ .++|..|+..++ +..|.|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 345678999999999999 99999999999999999999988773 69999999 899999999995 667889
Q ss_pred eEEEEEEecCc
Q 030819 147 RVIFVEIAKSR 157 (171)
Q Consensus 147 ~~i~v~~~~~~ 157 (171)
..++++.-...
T Consensus 86 ~~~~~evL~Ge 96 (121)
T 1owx_A 86 KEVTWEVLEGE 96 (121)
T ss_dssp SSEEEEECCHH
T ss_pred cEEEEEECCCH
Confidence 88888776543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1e-10 Score=74.37 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=64.0
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 030819 73 TCQPKTRLFVSGLSFR-----TSE----DSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKF 143 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~-----~~~----~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~ 143 (171)
..++..||+|.-++.. +.. .+|.+.|..||.|..++++.++ +||+|.+.++|.+||. |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 4567889999988743 222 5789999999999999998774 9999999999999999 99999
Q ss_pred eCCeEEEEEEecC
Q 030819 144 LDGRVIFVEIAKS 156 (171)
Q Consensus 144 i~g~~i~v~~~~~ 156 (171)
++|+.|+|.+..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999987643
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.11 E-value=3e-10 Score=83.85 Aligned_cols=69 Identities=19% Similarity=0.367 Sum_probs=61.3
Q ss_pred CCHHHHHHHHhcCCCeEEEEEeecC----CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q 030819 89 TSEDSLRNAFQGFGQLVEVNLVMDK----IANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 89 ~~~~~l~~~f~~~G~i~~~~~~~~~----~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~~~~~ 157 (171)
-.+++|.+.|.+||.|.++.+..+. .++.++|++||+|.+.++|.+|+..|||..++|+.|.+.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 3568999999999999999998554 35589999999999999999999999999999999999997643
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.88 E-value=2.2e-08 Score=65.08 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC-----CCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGF-----GQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVI 149 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i 149 (171)
...++|-+-+||..+++..|+.+...+ |.|..+.+..|. |-|+|+|.+...|-+|.-.|+|..+.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 447789999999999999999999999 999999999887 689999999999999998999999999999
Q ss_pred EEEEec
Q 030819 150 FVEIAK 155 (171)
Q Consensus 150 ~v~~~~ 155 (171)
++.-..
T Consensus 93 r~gTv~ 98 (117)
T 2l9w_A 93 RSGTIN 98 (117)
T ss_dssp EEECHH
T ss_pred EecCHH
Confidence 987544
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=1.9e-05 Score=50.88 Aligned_cols=75 Identities=9% Similarity=0.074 Sum_probs=61.8
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 030819 77 KTRLFVSGLSFRT-S----EDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFV 151 (171)
Q Consensus 77 ~~~l~V~nl~~~~-~----~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 151 (171)
..+|+|.||+.++ . .+.++.+|..|+++......+.- .-..|.|.+.++|.+|-..||+..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5689999998865 2 25779999999988776555432 25689999999999999999999999999999
Q ss_pred EEecCc
Q 030819 152 EIAKSR 157 (171)
Q Consensus 152 ~~~~~~ 157 (171)
.++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998743
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.94 E-value=6.5e-05 Score=47.76 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=47.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 030819 74 CQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (171)
Q Consensus 74 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 139 (171)
....+.+++ ++|+++...||.++|+.||. ..|+++.|- -|||.|.+++.|..|+..+
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 344566777 99999999999999999994 566777664 8999999999999999866
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=0.00042 Score=44.50 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=58.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhc-----CCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQG-----FGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVI 149 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~-----~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i 149 (171)
....+|.|.|||+.+.++.|.-+|++ -|+|..+.... +-|+|+|.+.+.|++.|.. ..+.+++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 44679999999999999999999986 25677776532 4789999999999999873 3567888888
Q ss_pred EEEEecC
Q 030819 150 FVEIAKS 156 (171)
Q Consensus 150 ~v~~~~~ 156 (171)
.|....+
T Consensus 77 sV~P~~~ 83 (104)
T 2dhx_A 77 SLRPAPP 83 (104)
T ss_dssp EEEECCC
T ss_pred EEEcCCC
Confidence 8876543
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=0.00038 Score=46.02 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=59.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEE
Q 030819 73 TCQPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDG-RVIFV 151 (171)
Q Consensus 73 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g-~~i~v 151 (171)
.....+-|.|.++|+.. -+.+...|++||.|.+.... ++ ..+-.|.|.++.+|++||. .||..+.| -.|-|
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 34456789999999985 56788899999999987762 12 2488999999999999999 69999975 66777
Q ss_pred EEec
Q 030819 152 EIAK 155 (171)
Q Consensus 152 ~~~~ 155 (171)
..-.
T Consensus 92 ~p~~ 95 (119)
T 1wwh_A 92 KPCI 95 (119)
T ss_dssp EECC
T ss_pred EECC
Confidence 6644
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.60 E-value=0.00073 Score=42.63 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=60.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCceeC---Ce--EEE
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANR--PRGFAFLRYATEEESRRAIEGMHGKFLD---GR--VIF 150 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~~fv~f~~~~~a~~al~~l~g~~i~---g~--~i~ 150 (171)
.+|.|++||+.+|++++.+.+.....+.....+..+.+.+ .-+-|+|.|.+.+++..-.+.++|..+. |. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4789999999999999999999988877776665553332 3357899999999999999999999872 22 345
Q ss_pred EEEec
Q 030819 151 VEIAK 155 (171)
Q Consensus 151 v~~~~ 155 (171)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 56554
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.58 E-value=0.00011 Score=46.76 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=46.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 140 (171)
+.++| ++|+++...||.++|+.|| -..|+++.|- -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45566 9999999999999999999 5677777764 89999999999999999764
No 216
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.28 E-value=1.4e-06 Score=57.53 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=25.8
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
...|||+|+.+++++..+.+.|...+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v 32 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNI 32 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCE
Confidence 4679999999999999999999998877
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.86 E-value=0.0013 Score=44.13 Aligned_cols=77 Identities=16% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEeec--------CCCC-----CcceEEEEEeCCHHHHHHHHHHhCCc
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVE-VNLVMD--------KIAN-----RPRGFAFLRYATEEESRRAIEGMHGK 142 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~--------~~~g-----~~~g~~fv~f~~~~~a~~al~~l~g~ 142 (171)
...|.|.++|++.. ..+.+.|++||.|.+ ...... +.+. ....+-.|.|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45788999987654 557789999999876 211100 0000 123577999999999999999 7999
Q ss_pred eeCCeEEEEEEec
Q 030819 143 FLDGRVIFVEIAK 155 (171)
Q Consensus 143 ~i~g~~i~v~~~~ 155 (171)
.+.|..|-|.+-.
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988887764
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.58 E-value=0.0085 Score=38.04 Aligned_cols=80 Identities=9% Similarity=0.092 Sum_probs=55.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCceeCC-----eE
Q 030819 76 PKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANR--PRGFAFLRYATEEESRRAIEGMHGKFLDG-----RV 148 (171)
Q Consensus 76 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~~fv~f~~~~~a~~al~~l~g~~i~g-----~~ 148 (171)
.+-+|.|+.||+.+||+++.+.+...-.+.....+..+.+.+ .-.-|+|.|.+.+++..-.+.++|..+.+ .+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356899999999999999887777654443332222222211 12468999999999999999999998622 24
Q ss_pred EEEEEec
Q 030819 149 IFVEIAK 155 (171)
Q Consensus 149 i~v~~~~ 155 (171)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5566654
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.36 E-value=0.0046 Score=42.40 Aligned_cols=35 Identities=6% Similarity=0.162 Sum_probs=28.4
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 030819 106 EVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGK 142 (171)
Q Consensus 106 ~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~ 142 (171)
.+.++.+. .+++|||||+|.+.++|++|+..+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 34566665 368999999999999999999887753
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.31 E-value=0.0024 Score=51.88 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=41.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIE 137 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 137 (171)
.++|+|. .|..+++.+|.++|.+||.|.++.+..++ | -|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 4689997 68899999999999999999998876543 3 699999999999887765
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.17 E-value=0.002 Score=44.04 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=37.3
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEecCc
Q 030819 115 ANRPRGFAFLRYATEEESRRAIEGM-HGKFLDGRVIFVEIAKSR 157 (171)
Q Consensus 115 ~g~~~g~~fv~f~~~~~a~~al~~l-~g~~i~g~~i~v~~~~~~ 157 (171)
....+|+++++|.+.++|++|++.+ ||..++| .|.+.++..+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 3467899999999999999999999 9999999 9999987653
No 222
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.15 E-value=0.0055 Score=36.52 Aligned_cols=54 Identities=11% Similarity=0.006 Sum_probs=38.9
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPS 67 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (171)
+.+||+|++++.++..+...|...+++ .+.....+...+++++.+++.+..+..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v---------~~v~i~~~~~~~~~~g~afV~f~~~~~ 54 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEV---------KECLVMRDPLTKRSRGFGFVTFMDQAG 54 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCC---------CCEEEECCCCSSSCSSEEEECCCCTTH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE---------EEEEEecCCCCCCcCceEEEEEcCHHH
Confidence 579999999999999999999998877 333333333445667777776665543
No 223
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=94.75 E-value=0.0078 Score=38.02 Aligned_cols=57 Identities=7% Similarity=0.062 Sum_probs=40.9
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPS 67 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (171)
|-.|||+|++++.+++.+...|...+...- .+.....+..+++++|++|+.+..+..
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v-------~~v~i~~d~~tg~srG~aFV~f~~~~~ 65 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAV-------NNIRLIKDKQTQQNRGFAFVQLSSAMD 65 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCG-------GGEECCCCSSSSSCSSEEEEECSSSHH
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccE-------EEEEEEecCCCCCCceEeEEEECCHHH
Confidence 456999999999999999999999876421 233334445556777787776665543
No 224
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=94.11 E-value=0.00085 Score=43.69 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=58.6
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC-----CCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL-----STCQPKT 78 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 78 (171)
...|||+|+++++++..+...|...+++ .+.... ..+..++++++.+.....+..+ ...-.++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v---------~~v~i~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPI---------RQIRVG---NTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCE---------EEEEEE---CSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe---------EEEEEe---eCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4579999999999999999999988776 222111 1234477788777665433221 1222344
Q ss_pred eEEE---------cCCCCCCCHHHHHHHHhcCCC
Q 030819 79 RLFV---------SGLSFRTSEDSLRNAFQGFGQ 103 (171)
Q Consensus 79 ~l~V---------~nl~~~~~~~~l~~~f~~~G~ 103 (171)
.|.| .+++...++++|.++|++||-
T Consensus 76 ~l~v~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 76 YLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp BCEEEECCHHHHTTTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEecCChhhhhhhHhHhHHHHHHHHHHhCC
Confidence 5554 355666788999999999984
No 225
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.97 E-value=0.23 Score=40.82 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=45.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 030819 77 KTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMH 140 (171)
Q Consensus 77 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 140 (171)
...++|+ +|..+...+|.++|+.||. .+++++.+. .|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4566676 8999999999999999995 466666553 79999999999999999875
No 226
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=93.95 E-value=0.013 Score=38.96 Aligned_cols=54 Identities=7% Similarity=0.013 Sum_probs=39.8
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLP 65 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (171)
..|||+|+.++++++.+...|...+.+.. .+...+.+..++++++++|+.+...
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~~~G~v~~-------~~v~i~~d~~tg~~rG~aFV~f~~~ 77 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALAPYAVLSS-------SNVRVIKDKQTQLNRGFAFIQLSTI 77 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHGGGCCCCT-------TTEECCBCSSSSSBCSCEEEECCHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcce-------eeEEEEEcCCCCCcceEEEEEECCH
Confidence 46999999999999999999999887722 1133444444667778887776654
No 227
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=93.89 E-value=0.0067 Score=37.39 Aligned_cols=54 Identities=6% Similarity=0.070 Sum_probs=37.4
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
++.+||+++.+++++..+...|...+++ .+.....+..++++++++++.+....
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKV---------FNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCC---------SEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCE---------EEEEEEEcCCCCCcceEEEEEECCHH
Confidence 4689999999999999999999998776 33333333334555566665554443
No 228
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=93.89 E-value=0.00092 Score=42.46 Aligned_cols=28 Identities=11% Similarity=-0.083 Sum_probs=24.8
Q ss_pred eeeecCceeecccchhhcccCCcCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAP 32 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 32 (171)
+.|||+++.+++++..+...|...+++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 28 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLR 28 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeE
Confidence 4799999999999999999999888763
No 229
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=92.50 E-value=0.014 Score=37.81 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=44.7
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL 71 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (171)
..|||+|+.+++++..+...|...+++...... .........+..+++.++++++.+.....+..+
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~-~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 73 (116)
T 2lcw_A 8 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKT-GQPMINLYTDRETGKLKGEATVSFDDPPSAKAA 73 (116)
Confidence 569999999999999999999998877221000 000023333444567788999988877766544
No 230
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=93.30 E-value=0.013 Score=34.63 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=37.6
Q ss_pred eeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC
Q 030819 6 FLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
.+||++++++.++..+...|...+++ .+.........++.++++++.+..+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~ 52 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEV---------ESIELPMDNKTNKRRGFCFITFKEEE 52 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCC---------SEECCCCSCCCSSSCCCEEEECSSSH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCe---------EEEEEEecCCCCCcCCEEEEEECCHH
Confidence 48999999999999999999998777 33333333344566777777666554
No 231
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=93.19 E-value=0.012 Score=36.62 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=37.9
Q ss_pred eeeecCceeecccchhhcccCCcCC-CCCCCCccccccccccccccccCCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHS-PAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
-.|||+|++++.+++.+...|...+ ++ .+...+.+..++++++++++.+..+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v---------~~v~i~~d~~t~~~rg~aFV~F~~~~ 55 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQA---------REVRLMRNKSSGQSRGFAFVEFSHLQ 55 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCC---------SBCCSSSCSSSCCCSSEEEEECSSHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEe---------EEEEEEecCCCCCcCceEEEEecCHH
Confidence 4689999999999999999999877 44 33333444445666777766655443
No 232
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.95 E-value=0.014 Score=38.45 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=37.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
+.|||+++.++.++..+...|...+++ .+...+....+++.++++++.+....
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v---------~~~~~~~~~~~g~~~G~afV~F~~~~ 78 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIV---------EDSIYIAYGPNGKATGEGFVEFRNEA 78 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBC---------TTTCEEEECTTSSEEEEEEEEBSSSH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCc---------cceEEEEECCCCCCCeEEEEEECCHH
Confidence 579999999999999999999998877 22223333334556666666555443
No 233
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.90 E-value=0.028 Score=36.32 Aligned_cols=54 Identities=17% Similarity=0.058 Sum_probs=37.4
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCcccccccccccccccc---CCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQ---GRGRGACFPLACLPPS 67 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 67 (171)
.+.|||+++.+++++..+...|...+++. ........+ ++.++++++.+..+..
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~----------~~~~~~~~~~~~g~~~G~aFV~f~~~~~ 64 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV----------VDWPHKAESKSYFPPKGYAFLLFQEESS 64 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC----------EECTTSSSSCCCSCTTSEEEECCSSHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE----------EEEeecCCCCCCCCcccEEEEEECCHHH
Confidence 57899999999999999999999988772 111222222 4566677666655443
No 234
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=92.90 E-value=0.0047 Score=39.23 Aligned_cols=51 Identities=16% Similarity=-0.007 Sum_probs=34.9
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACL 64 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (171)
..|||+|++++++++.+...|...+++ .+.....+..++++++++++.+..
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I---------~~v~i~~d~~tg~~kG~afV~f~~ 70 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEV---------ESAKLIRDKVAGHSLGYGFVNYVT 70 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCE---------EEEEEEECSSSCCEEEEEEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE---------EEeEeeecCCCCcccccEEEEECC
Confidence 359999999999999999999988776 333333333344555555544443
No 235
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=92.67 E-value=0.015 Score=37.45 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=24.6
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.++++++.+...|...+++
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~~~G~i 52 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFGQFGEV 52 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHTTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHccCCe
Confidence 579999999999999999999988776
No 236
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=92.55 E-value=0.0086 Score=40.29 Aligned_cols=53 Identities=8% Similarity=-0.041 Sum_probs=45.8
Q ss_pred eeeeeecCce----eecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 030819 3 VLGFLPVPTT----YFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACL 64 (171)
Q Consensus 3 ~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (171)
|...|||+++ .++.++..+...|...+.+ .+.....+..+++++|++++.+..
T Consensus 1 mp~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV---------~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 1 MSCEIVVYPAQDSTTTNIQDISIKNYFKKYGEI---------SHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp -CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCC---------SEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe---------EEEEEEecCCCCceeeEEEEEECC
Confidence 3468999999 9999999999999999998 777788888888999999887775
No 237
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=92.52 E-value=0.0029 Score=40.13 Aligned_cols=58 Identities=9% Similarity=0.058 Sum_probs=42.5
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL 71 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (171)
.+.|||+++.++++++.+...|...+++ .+....... .++.++++++.+.....+..+
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i---------~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A 66 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSV---------KEVKIITDR-TGVSKGYGFVSFYNDVDVQKI 66 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCE---------EEEEEEECT-TSCEEEEEEEEESSCCCHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCe---------EEEEEEECC-CCCccceEEEEECCHHHHHHH
Confidence 5789999999999999999999887766 333333333 566777888877766654433
No 238
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=92.49 E-value=0.01 Score=36.64 Aligned_cols=51 Identities=8% Similarity=0.004 Sum_probs=35.1
Q ss_pred eeecCceeecccchhhcccCCcCC--CCCCCCccccccccccccccccCCCCCCCCCCCCCC
Q 030819 6 FLPVPTTYFNINQNLLIHNLTRHS--PAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLP 65 (171)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (171)
.|||+|+.++.+++.+...|...+ .+ .+.....+..+++++|++++.+...
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v---------~~v~i~~~~~~g~~kG~afV~f~~~ 55 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDI---------LEIKFFENRANGQSKGFALVGVGSE 55 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCC---------CCEEEEECTTTCCEEEEEEECC-CH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCce---------EEEEEEecCCCCccCcEEEEEECCH
Confidence 589999999999999999999887 44 3333334444556666666665544
No 239
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.47 E-value=0.03 Score=35.20 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=24.5
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~~~G~i 39 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFIPFGDI 39 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTTSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHhhccCCE
Confidence 569999999999999999999988776
No 240
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=92.47 E-value=0.018 Score=34.04 Aligned_cols=51 Identities=18% Similarity=0.078 Sum_probs=34.6
Q ss_pred eeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCC
Q 030819 6 FLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLP 65 (171)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (171)
++||+++++++++..+...|...+++ .+.........+++++++++.+..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~ 51 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKV---------DDAMLMFDKTTNRHRGFGFVTFESE 51 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCC---------SEECCCBCSSSTTSCBEEEEECSCH
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCE---------EEEEEEecCCCCCcCcEEEEEECCH
Confidence 48999999999999999999998776 2322233333445555665555443
No 241
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=92.43 E-value=0.03 Score=35.74 Aligned_cols=54 Identities=7% Similarity=0.049 Sum_probs=34.6
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLP 65 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (171)
+.|||+|+.++.++..+...|...++... -.+........ ++.++++++.+...
T Consensus 12 ~~l~V~nLp~~~te~~l~~~F~~~g~~~~------v~~v~i~~~~~-g~~~G~afV~F~~~ 65 (107)
T 2lmi_A 12 FLIRAQGLPWSCTMEDVLNFFSDCRIRNG------ENGIHFLLNRD-GKRRGDALIEMESE 65 (107)
T ss_dssp CEEEEECCCSSCCSHHHHHHTTTSCBTTT------TTTEECCCCTT-STTCSEEEEEBSSH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcCC------cceEEEEECCC-CCEeeEEEEEECCH
Confidence 56999999999999999999988666210 02222223322 55666666555443
No 242
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.33 E-value=0.027 Score=34.16 Aligned_cols=28 Identities=7% Similarity=-0.172 Sum_probs=24.9
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++++++++..+...|...+++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i 32 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKI 32 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3579999999999999999999987766
No 243
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=92.02 E-value=0.0093 Score=38.64 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=39.6
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLP 65 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (171)
..|||+++.++++++.+.+.|...+++ .+.....+..++++++++++.+...
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i---------~~v~i~~d~~tg~~rG~aFV~f~~~ 58 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEV---------EEVEILLHPRTRKHLGLARVLFTST 58 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCE---------EEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCe---------eEEEEEECCCCCceeeEEEEEECCH
Confidence 469999999999999999999998887 4555555555566777777655443
No 244
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.96 E-value=0.022 Score=35.99 Aligned_cols=54 Identities=13% Similarity=-0.003 Sum_probs=36.8
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
.+.|||+++.+++++..+...|...+++ .+........+++.++++++.+..+.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~ 66 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRV---------GDVYIPREPHTKAPRGFAFVRFHDRR 66 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCE---------EEEECCBCSSSCSBCSCEEEEESSSS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCE---------EEEEEEeCCCCCCCCeEEEEEECCHH
Confidence 3679999999999999999999987766 33333333333455566665554443
No 245
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.86 E-value=0.013 Score=37.50 Aligned_cols=52 Identities=8% Similarity=-0.067 Sum_probs=38.1
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
..|||++++++.++..+...|...+++ .+........ ++++|++++.+..+.
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~~G~v---------~~v~i~~d~~-g~~rG~aFV~F~~~e 63 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDKGQV---------LNIQMRRTLH-KAFKGSIFVVFDSIE 63 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHTSSCE---------EEEEEECCCT-TSCCCEEEEEESSHH
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCE---------EEEEEEECCC-CCCccEEEEEECCHH
Confidence 469999999999999999999998877 3333333333 667777777665543
No 246
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.85 E-value=0.028 Score=36.32 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=35.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACL 64 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (171)
+.|||+++.+++++..+...|...+++ ..........+++.++++++.+..
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i---------~~v~i~~~~~~g~~~g~afV~f~~ 78 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKL---------TDCVVMRDPASKRSRGFGFVTFSS 78 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCC---------SEEEEECCTTTSSCCSEEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE---------EEEEEEECCCCCCcCceEEEEeCC
Confidence 579999999999999999999988877 333333333344555555544443
No 247
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.57 E-value=0.02 Score=36.42 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=37.5
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccc-cccccccccCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRD-FDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
.+.|||++++++.++..+...|...+.+ .+ ...... .+++.++++++.+..+.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v---------~~~v~i~~~-~~g~~~G~afV~F~~~~ 68 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIV---------PNGMTLPVD-FQGRSTGEAFVQFASQE 68 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEE---------EEEEECCBC-SSSCBCSEEEEEESSHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCc---------ceeEEEEEC-CCCCcceEEEEEECCHH
Confidence 3679999999999999999999887665 22 222233 45667777777665544
No 248
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.56 E-value=0.023 Score=35.62 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=24.8
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.++++++.+...|...+++
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i 37 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVV 37 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3579999999999999999999987766
No 249
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.54 E-value=0.023 Score=36.66 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=35.1
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACL 64 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (171)
+.|||+++.+++++..+...|...+.+ .+.....+..+++.++++++.+..
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~g~~~g~afV~f~~ 76 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKV---------RDVRIISDRNSRRSKGIAYVEFCE 76 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCE---------EEEEECCSCCSSSCCCCEEEEESC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCE---------eEEEEEecCCCCccCcEEEEEeCc
Confidence 579999999999999999999887766 333333333334555565554443
No 250
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.36 E-value=0.03 Score=35.56 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=37.1
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPS 67 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (171)
.+.|||+|++++.+++.+.+.|...++. +....... +++.++++++.+..+..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~----------~v~i~~d~-~g~~~G~afV~F~~~~~ 67 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNPM----------RVHIEIGP-DGRVTGEADVEFATHED 67 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCCS----------EEEEEESS-SSCEEEEEEEECSSSHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCce----------EEEEEECC-CCCEeeEEEEEECCHHH
Confidence 3579999999999999999999886632 22222332 46667777777665543
No 251
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=91.23 E-value=0.023 Score=36.80 Aligned_cols=51 Identities=6% Similarity=-0.140 Sum_probs=34.5
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACL 64 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (171)
+.|||+++.+++++..+...|...+++ .+.....+...++.++++++.+..
T Consensus 41 ~~l~V~nlp~~~t~~~l~~~F~~~G~i---------~~~~i~~~~~~g~~~g~afV~f~~ 91 (118)
T 2khc_A 41 CNLFIYHLPQEFTDTDLASTFLPFGNV---------ISAKVFIDKQTSLSKCFGFVSFDN 91 (118)
T ss_dssp EEEEEECSCTTCCHHHHHHHTTTSCEE---------EEEEECCCSSSSCCCCEEEEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE---------EEEEEEeCCCCCCcCcEEEEEECC
Confidence 579999999999999999999887765 333333333344555555544443
No 252
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=91.22 E-value=0.031 Score=37.21 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=39.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPH 69 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (171)
+.|||+|++++.+++.+...|... .+. ..+........ ++.+|++++.+..+..+.
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~-~i~-------~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~ 98 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGL-EIV-------PNGITLPVDPE-GKITGEAFVQFASQELAE 98 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTS-CEE-------EEEEECCCCSS-SSSCSEEEEEESSTTHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcC-Cce-------eeEEEEEECCC-CCCceEEEEEECCHHHHH
Confidence 579999999999999999999885 220 00233333333 778888888887766443
No 253
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.19 E-value=0.032 Score=34.61 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=25.3
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++++++++..+...|...+++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i 32 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVI 32 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 4679999999999999999999988776
No 254
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=91.03 E-value=0.049 Score=34.21 Aligned_cols=26 Identities=0% Similarity=-0.100 Sum_probs=22.9
Q ss_pred eeeeecCceeecccchhhcccCCcCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHS 29 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~ 29 (171)
.+.|||+|+.++++++.+...|...+
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G 44 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN 44 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 46799999999999999999998866
No 255
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=90.98 E-value=0.0086 Score=37.94 Aligned_cols=54 Identities=9% Similarity=0.080 Sum_probs=40.5
Q ss_pred eeeeecCceee------cccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYF------NINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 4 ~~~~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
.+.|||+|+++ +..+..+...|...+++ .+.....+..++++++++++.+..+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i---------~~v~i~~d~~tg~~kG~afV~f~~~~ 65 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKV---------VNMEFPIDEATGKTKGFLFVECGSMN 65 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCE---------EEEECCEETTTTEECSEEEEEESSHH
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCE---------eEEEEEEcCCCCccceEEEEEECCHH
Confidence 46799999999 99999999999998877 44444455555677777776665543
No 256
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=90.92 E-value=0.013 Score=35.77 Aligned_cols=50 Identities=22% Similarity=0.217 Sum_probs=34.1
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLAC 63 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (171)
+.|||+++++++++..+...|...+++ .+........+++.++++++.+.
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~g~~~g~afV~f~ 61 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFTKFGEV---------VDCTIKMDPNTGRSRGFGFILFK 61 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTTSCE---------EEEEEEECTTTCCEEEEEEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCE---------EEEEEeecCCCCccccEEEEEEC
Confidence 579999999999999999999887766 33333333333445555554443
No 257
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.74 E-value=0.02 Score=35.89 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=26.0
Q ss_pred eeeeeecCceeecccchhhcccCCcCCCC
Q 030819 3 VLGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 3 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..+.|||+++.+++++..+...|...+++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i 36 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGET 36 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCc
Confidence 35689999999999999999999998876
No 258
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.72 E-value=0.036 Score=34.57 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=24.8
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||++++++++++.+...|...+++
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~v 42 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFYGYQVI 42 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCc
Confidence 679999999999999999999988777
No 259
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=90.66 E-value=0.024 Score=35.90 Aligned_cols=27 Identities=11% Similarity=-0.080 Sum_probs=24.6
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 40 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEFGKI 40 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHHSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 579999999999999999999988776
No 260
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=90.65 E-value=0.034 Score=37.50 Aligned_cols=54 Identities=9% Similarity=0.058 Sum_probs=35.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLP 65 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (171)
+.|||+|+.++.++..+...|...+.+.. -.+........ +++++++++.+..+
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~------v~~v~i~~d~~-g~srG~aFV~F~~~ 98 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDG------AAGVHFIYTRE-GRQSGEAFVELGSE 98 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSS------STTEEEEECSS-SCEEEEEEEECSSH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCc------eeEEEEEECCC-CCCCeEEEEEECCH
Confidence 56999999999999999999999776210 02222233322 55666666555443
No 261
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=90.55 E-value=0.017 Score=42.42 Aligned_cols=56 Identities=9% Similarity=-0.002 Sum_probs=43.8
Q ss_pred eeeecCceeecccchhhcccCCcCC--CCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHS--PAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPH 69 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (171)
+.|||+|+.+++++..|...|...+ .+ .+...+.+..++++++++|+.+.....+.
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v---------~~v~i~~d~~tg~skGfaFV~f~~~~~a~ 126 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDI---------LEIKFFENRANGQSKGFALVGVGSEASSK 126 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCE---------EEEEEEECTTTCCEEEEEEEEESCTTHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcce---------EEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 5699999999999999999999877 45 44445555567788889998887765433
No 262
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=90.45 E-value=0.021 Score=34.86 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=35.1
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLP 65 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (171)
+.+||++++++.++..+...|...+++ .+.....+...++.++++++.+..+
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~ 58 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSV---------NRVTILCDKFSGHPKGFAYIEFSDK 58 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCE---------EEEEEEESCSSSSCCEEEEEEESST
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCE---------EEEEEEecCCCCCcceEEEEEECCH
Confidence 579999999999999999999987766 3333333333445555555544443
No 263
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.44 E-value=0.031 Score=35.26 Aligned_cols=28 Identities=7% Similarity=-0.063 Sum_probs=25.0
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.++++++.+...|...+++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i 42 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSI 42 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCe
Confidence 3679999999999999999999987766
No 264
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=90.39 E-value=0.023 Score=35.61 Aligned_cols=28 Identities=7% Similarity=-0.118 Sum_probs=25.3
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+|+.++++++.+...|...+.+
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i 40 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGII 40 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCE
Confidence 4679999999999999999999988776
No 265
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.35 E-value=0.016 Score=36.73 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=36.2
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
+.|||+++.+++++..+...|...+++ .+.........++.++++++.+..+.
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v---------~~v~i~~~~~~g~~~g~afV~f~~~~ 69 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEV---------VDCVIMKDKTTNQSRGFGFVKFKDPN 69 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCE---------EEEEEEECSSSCCEEEEEEEEESSTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe---------EEEEEeeCCCCCCcceEEEEEECCHH
Confidence 579999999999999999999887766 33333333334455556655555443
No 266
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.25 E-value=0.06 Score=34.73 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=33.0
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACL 64 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (171)
+.|||+|++++.++..+.+.|... .+ .+....... .++.++++++.+..
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v---------~~v~i~~d~-~g~~~G~afV~F~~ 65 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RV---------DAVHLLKDH-VGRNNGNGLVKFLS 65 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CC---------CEEEECCCT-TCCCCSEEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-Ce---------eEEEEEECC-CCCCCeEEEEEECC
Confidence 479999999999999999999875 33 222223332 25566666655544
No 267
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=90.24 E-value=0.036 Score=34.31 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=24.7
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||++++++++++.+...|...+++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 42 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVI 42 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 679999999999999999999987776
No 268
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=90.23 E-value=0.015 Score=46.91 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=43.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPH 69 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (171)
+.|||+|+.+++++..|...|...+++ ..+..+....++..++++|+.|.....+.
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I---------~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 158 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPI---------KRIHMVYSKRSGKPRGYAFIEYEHERDMH 158 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCe---------eEEEeeccCCCCCccceEEEeeccHHHHH
Confidence 579999999999999999999998887 44444445456777888888877665443
No 269
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.18 E-value=0.049 Score=34.93 Aligned_cols=28 Identities=7% Similarity=-0.089 Sum_probs=25.1
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+|+.++++++.+...|...+++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i 42 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQCGVV 42 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTTSCB
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCE
Confidence 3579999999999999999999988776
No 270
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=90.13 E-value=0.084 Score=35.65 Aligned_cols=52 Identities=8% Similarity=-0.012 Sum_probs=37.9
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPS 67 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (171)
..|||+|+.++.+++.+.+.|...+ + .+.....+. .+++++++++.+..+..
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~G-i---------~~v~i~~d~-~g~srGfaFV~F~~~e~ 98 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLN-P---------VRVHIEIGP-DGRVTGEADVEFATHEE 98 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCC-C---------SEEECCCSS-SSCSSCCCEEECSHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-C---------eEEEEEECC-CCCCceEEEEEeCCHHH
Confidence 5799999999999999999999876 3 122223333 36788888887765543
No 271
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.07 E-value=0.028 Score=35.52 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=24.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 42 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFLQAGPV 42 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHHTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 579999999999999999999887766
No 272
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.03 E-value=0.098 Score=31.83 Aligned_cols=28 Identities=7% Similarity=-0.082 Sum_probs=25.7
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++++++++..+...|...+++
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i 32 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDV 32 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCe
Confidence 4679999999999999999999998877
No 273
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.99 E-value=0.036 Score=34.26 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=24.9
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.+++++..+...|...+++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v 32 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKI 32 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 4679999999999999999999887766
No 274
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=89.85 E-value=0.021 Score=34.38 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=24.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+|++++++++.+...|...+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i 28 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSY 28 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 579999999999999999999887766
No 275
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=89.82 E-value=0.034 Score=35.49 Aligned_cols=27 Identities=7% Similarity=-0.027 Sum_probs=24.2
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 53 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFCDYGEI 53 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 569999999999999999999887766
No 276
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=89.82 E-value=0.028 Score=36.28 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=24.5
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i 52 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNV 52 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 569999999999999999999988776
No 277
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.78 E-value=0.034 Score=34.73 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=24.2
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 35 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAYGPL 35 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 579999999999999999999887765
No 278
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.75 E-value=0.048 Score=33.60 Aligned_cols=27 Identities=15% Similarity=0.168 Sum_probs=24.1
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++++++++..+...|...+++
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~f~~~G~v 43 (94)
T 2e5h_A 17 STVYVSNLPFSLTNNDLYRIFSKYGKV 43 (94)
T ss_dssp TSEEEESCCTTSCHHHHHHHTTTTSCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCe
Confidence 469999999999999999999887766
No 279
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.74 E-value=0.032 Score=36.02 Aligned_cols=27 Identities=7% Similarity=-0.046 Sum_probs=24.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.++++++.+...|...+++
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 44 (116)
T 2cqd_A 18 TKIFVGGLPYHTTDASLRKYFEGFGDI 44 (116)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCe
Confidence 579999999999999999999887766
No 280
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=89.63 E-value=0.016 Score=39.93 Aligned_cols=49 Identities=10% Similarity=0.066 Sum_probs=34.4
Q ss_pred eeeecCceeecccchhhcccCCcCC--CCCCCCccccccccccccccccCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHS--PAPATPFTIKRRDFDSLFSLRQGRGRGACFPLA 62 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (171)
..|||+|+.+++++..+...|...+ .+ .+.....+..+++.+|++|+.+
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v---------~~v~i~~d~~tg~skGfaFV~f 106 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDV---------VELKFAENRANGQSKGYAEVVV 106 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCE---------EEEEEEECTTTCCEEEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccE---------EEEEEEecCCCCccceEEEEEE
Confidence 4799999999999999999999887 44 3333334444455556655443
No 281
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.49 E-value=0.029 Score=35.81 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=24.6
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
...|||+++.+++++..+...|...+++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i 42 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDL 42 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCe
Confidence 3569999999999999999999887765
No 282
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.41 E-value=0.063 Score=33.86 Aligned_cols=25 Identities=0% Similarity=-0.073 Sum_probs=22.8
Q ss_pred eeeecCceeecccchhhcccCCcCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHS 29 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~ 29 (171)
+.|||+++.++++++.+...|...+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G 40 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLN 40 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCC
Confidence 6799999999999999999998865
No 283
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=89.36 E-value=0.032 Score=34.75 Aligned_cols=27 Identities=4% Similarity=0.151 Sum_probs=24.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..|||+++.+++++..+...|...+++
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i 29 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPV 29 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCE
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCE
Confidence 579999999999999999999887765
No 284
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=89.35 E-value=0.075 Score=35.50 Aligned_cols=53 Identities=13% Similarity=0.010 Sum_probs=37.7
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPP 66 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (171)
..|||+++.+++++..+...|...+++ .+.........++.++++++.+....
T Consensus 48 ~~l~V~nLp~~~te~~L~~~F~~~G~i---------~~v~i~~~~~~g~~~G~afV~F~~~~ 100 (135)
T 2lea_A 48 TSLKVDNLTYRTSPDTLRRVFEKYGRV---------GDVYIPRDRYTKESRGFAFVRFHDKR 100 (135)
T ss_dssp CCEEEECCCSSCHHHHHHHHHGGGSCC---------SEEECCCCSSSSSCCSCCEEECSCHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE---------EEEEEEecCCCCccceEEEEEECCHH
Confidence 469999999999999999999998876 33333333344566677776665443
No 285
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=89.27 E-value=0.056 Score=35.09 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.7
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i 34 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKHGPI 34 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 579999999999999999999988776
No 286
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=89.11 E-value=0.045 Score=35.81 Aligned_cols=27 Identities=7% Similarity=-0.066 Sum_probs=24.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+|+.+++++..+...|...+++
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 49 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAEYGEI 49 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 579999999999999999999887766
No 287
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.05 E-value=0.042 Score=34.52 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=24.4
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..|||+++.+++++..+...|...+++
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~G~i 39 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKYGQI 39 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCe
Confidence 579999999999999999999887766
No 288
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.59 E-value=0.023 Score=35.89 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=24.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~F~~~G~i 42 (103)
T 2cqg_A 16 SDLIVLGLPWKTTEQDLKEYFSTFGEV 42 (103)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCE
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCe
Confidence 569999999999999999999887766
No 289
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.47 E-value=0.14 Score=33.29 Aligned_cols=28 Identities=0% Similarity=-0.079 Sum_probs=25.4
Q ss_pred eeeeecCceeec-ccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFN-INQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~-~~~~~~~~~~~~~~~~ 31 (171)
...|||+|+.++ +++..+...|...+.+
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V 53 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKI 53 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCC
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCE
Confidence 457999999998 9999999999998887
No 290
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=88.30 E-value=0.029 Score=35.57 Aligned_cols=27 Identities=7% Similarity=-0.066 Sum_probs=24.4
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i 50 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEI 50 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCe
Confidence 569999999999999999999887766
No 291
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=88.26 E-value=0.048 Score=35.54 Aligned_cols=27 Identities=4% Similarity=-0.096 Sum_probs=23.9
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.++.++..+...|...+..
T Consensus 18 ~~l~V~nLp~~~te~~l~~~F~~~G~~ 44 (118)
T 2db1_A 18 YVVKLRGLPWSCSIEDVQNFLSDCTIH 44 (118)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTSCBT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCc
Confidence 569999999999999999999887663
No 292
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.10 E-value=0.063 Score=35.47 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=24.4
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+|++|+.++..+.+.|...+++
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v 50 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPI 50 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCc
Confidence 579999999999999999999987765
No 293
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=88.10 E-value=0.05 Score=33.55 Aligned_cols=28 Identities=7% Similarity=-0.115 Sum_probs=25.3
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
...|||+++++++++..+...|...+++
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i 38 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEV 38 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCE
Confidence 3579999999999999999999998876
No 294
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.81 E-value=0.18 Score=32.34 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=24.0
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..|||+++.+++++..+...|...+.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v 42 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVD 42 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCC
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCc
Confidence 579999999999999999999887655
No 295
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.70 E-value=0.046 Score=34.57 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=24.2
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 42 (107)
T 2cph_A 16 SKILVRNIPFQANQREIRELFSTFGEL 42 (107)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHccCCe
Confidence 579999999999999999999887765
No 296
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=87.70 E-value=0.051 Score=36.07 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=34.5
Q ss_pred eeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACL 64 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (171)
+.|||+++.+++++..+...|...+++ .+.........++.++++++.+..
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~G~I---------~~v~i~~d~~tg~~~G~afV~F~~ 97 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKYGPI---------ADVSIVYDQQSRRSRGFAFVYFEN 97 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTTSCE---------EEEEEECCSSSSCCCCEEEEEESC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe---------EEEEEEecCCCCccceEEEEEECC
Confidence 569999999999999999999887766 333333333334555555544443
No 297
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=87.59 E-value=0.034 Score=33.59 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=24.2
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++++++++..+...|...+++
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~~~G~i 34 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFIPFGDI 34 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHGGGSCE
T ss_pred CEEEEECCCCCCCHHHHHHHHhccCCE
Confidence 569999999999999999999887766
No 298
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=87.30 E-value=0.034 Score=33.73 Aligned_cols=27 Identities=7% Similarity=-0.089 Sum_probs=24.2
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..|||+++.+++++..+...|...+++
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i 33 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRI 33 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 579999999999999999999887765
No 299
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=87.17 E-value=0.089 Score=34.31 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=24.6
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.++.++..+...|...+++
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v 62 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTL 62 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3579999999999999999999887766
No 300
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=87.05 E-value=0.057 Score=34.28 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=37.3
Q ss_pred eeeeeecCceeecc------cchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCC
Q 030819 3 VLGFLPVPTTYFNI------NQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPS 67 (171)
Q Consensus 3 ~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (171)
+.+.|||+|++++. ++..+...|...+++ .+.... ..++++++++++.+..+..
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v---------~~v~i~--~~~g~~~G~afV~f~~~~~ 73 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKI---------TNDFYP--EEDGKTKGYIFLEYASPAH 73 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCE---------EEEECC--CBTTBSCCEEEEEECSSSH
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCE---------EEEEee--CCCCCeeeEEEEEECCHHH
Confidence 35679999999998 567888889887776 222222 2345677777777766554
No 301
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=87.04 E-value=0.036 Score=36.22 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=24.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.++++++.+...|...+++
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 63 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSI 63 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 469999999999999999999987766
No 302
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.83 E-value=0.047 Score=34.72 Aligned_cols=26 Identities=4% Similarity=-0.042 Sum_probs=23.4
Q ss_pred eeeecCceeecccchhhcccCCcCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSP 30 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~ 30 (171)
+.|||+++.++++++.+...|...++
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~ 34 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKVTE 34 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHST
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhcC
Confidence 57999999999999999999988765
No 303
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=86.49 E-value=0.039 Score=35.37 Aligned_cols=28 Identities=21% Similarity=0.129 Sum_probs=24.8
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.+++++..+...|...+++
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i 53 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRI 53 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3579999999999999999999887766
No 304
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=86.28 E-value=0.044 Score=35.24 Aligned_cols=27 Identities=7% Similarity=-0.124 Sum_probs=24.4
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 42 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRI 42 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 579999999999999999999887766
No 305
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=86.15 E-value=0.12 Score=36.20 Aligned_cols=51 Identities=12% Similarity=0.028 Sum_probs=35.1
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACL 64 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (171)
.+.|||+|+.++++++.+...|...+++ ......... .++.++++++.+..
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I---------~~v~i~~d~-~g~~kG~afV~F~~ 138 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTL---------KKAAVDYDR-SGRSLGTADVHFER 138 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCC---------SEEEECCCT-TSSCSCCEEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe---------EEEEEEECC-CCCEeeEEEEEeCC
Confidence 3689999999999999999999988776 333333332 44555555544443
No 306
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.05 E-value=0.078 Score=32.49 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=21.9
Q ss_pred eeeecCceeecccchhhcccCCcC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRH 28 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~ 28 (171)
+.|||++++++++++.+...|...
T Consensus 11 ~~l~v~nLp~~~t~~~l~~~F~~~ 34 (91)
T 2dgw_A 11 HTVKLRGAPFNVTEKNVMEFLAPL 34 (91)
T ss_dssp CEEEEECCCSSCCHHHHHHHHTTS
T ss_pred cEEEEECCCCCCCHHHHHHHHhhC
Confidence 579999999999999999999876
No 307
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.04 E-value=0.19 Score=32.02 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=25.3
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.++++++.+...|...+++
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i 56 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKI 56 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCE
Confidence 3579999999999999999999998877
No 308
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.93 E-value=0.15 Score=32.52 Aligned_cols=28 Identities=4% Similarity=-0.138 Sum_probs=25.3
Q ss_pred eeeeecCceee-cccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYF-NINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~-~~~~~~~~~~~~~~~~~ 31 (171)
...|||+|+++ ++++..+...|...+.+
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V 43 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVI 43 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCE
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCE
Confidence 45799999999 99999999999998877
No 309
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=85.92 E-value=0.089 Score=34.88 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=23.8
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..|||+++.+++++..+...|...+++
T Consensus 64 ~~l~v~nlp~~~~~~~l~~~f~~~G~i 90 (140)
T 2ku7_A 64 RVLYVGGLAEEVDDKVLHAAFIPFGDI 90 (140)
T ss_dssp CEEEEECCCTTCCHHHHHHHHGGGSCE
T ss_pred cEEEEEeCCCCCCHHHHHHHHHhcCCE
Confidence 469999999999999999999887766
No 310
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.88 E-value=0.068 Score=34.29 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=24.2
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++++++++..+...|...+.+
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 52 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQV 52 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 569999999999999999999887765
No 311
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.77 E-value=0.047 Score=34.34 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=24.5
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..|||+++.+++++..+...|...+++
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i 35 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPV 35 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCC
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCe
Confidence 569999999999999999999988776
No 312
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=85.41 E-value=0.066 Score=33.68 Aligned_cols=25 Identities=16% Similarity=-0.164 Sum_probs=22.3
Q ss_pred eeeeecCceeecccchhhcccCCcC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRH 28 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~ 28 (171)
.+.|||+++.+++++..+...|...
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~ 39 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDL 39 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhC
Confidence 3579999999999999999999875
No 313
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.41 E-value=0.06 Score=34.64 Aligned_cols=28 Identities=4% Similarity=-0.015 Sum_probs=25.5
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+|++++++++.+...|...+.+
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V 43 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKV 43 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 4679999999999999999999998877
No 314
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=85.30 E-value=0.025 Score=35.55 Aligned_cols=51 Identities=14% Similarity=-0.052 Sum_probs=34.4
Q ss_pred eeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACL 64 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (171)
.+.|||+|+.+++++..+...|...+++ .. ..+.....++.++++++.+..
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v---------~~-~~~~~~~~g~~~g~afV~f~~ 67 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAK---------ND-LAVVDVRTGTNRKFGYVDFES 67 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHH---------HT-CCCCEEEEETTTTEEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCc---------ce-EEEecCCCCCcCcEEEEEECC
Confidence 3579999999999999999998886654 11 222333345566666655543
No 315
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.95 E-value=0.074 Score=33.42 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=24.8
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.+++++..+...|...+++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i 42 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFSPFGTI 42 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTTTTSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 3579999999999999999999987766
No 316
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=84.93 E-value=0.057 Score=34.06 Aligned_cols=28 Identities=7% Similarity=-0.159 Sum_probs=24.8
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.+++++..+...|...+++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i 42 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVI 42 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3579999999999999999999887765
No 317
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.84 E-value=0.038 Score=34.86 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=24.4
Q ss_pred eeeecCceeecccchhhcccCCc-CCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTR-HSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~-~~~~ 31 (171)
+.|||+++.++++++.+...|.. .+.+
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~~G~v 37 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFVKVYPSC 37 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHCTTE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCe
Confidence 57999999999999999999988 7766
No 318
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.60 E-value=0.076 Score=34.06 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=24.0
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+|+.++++++.+...|...+.+
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~f~~~G~v 52 (115)
T 2cpx_A 26 KVLYLKNLSPRVTERDLVSLFARFQEK 52 (115)
T ss_dssp SEEEEECCCTTCCHHHHHHHTHHHHHS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCc
Confidence 579999999999999999999887665
No 319
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=84.36 E-value=0.061 Score=36.66 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=25.1
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.+++++..+...|...+++
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i 66 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKSGDI 66 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 4679999999999999999999987766
No 320
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=84.26 E-value=0.066 Score=36.94 Aligned_cols=27 Identities=7% Similarity=-0.027 Sum_probs=24.4
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+|+.+++++..+...|...+++
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~G~i 99 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDYGEI 99 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcCCCE
Confidence 469999999999999999999988776
No 321
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=84.13 E-value=0.045 Score=34.17 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=53.6
Q ss_pred eeeeeecCceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCCC-----CCCCCC
Q 030819 3 VLGFLPVPTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSPHSL-----STCQPK 77 (171)
Q Consensus 3 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 77 (171)
+++-|||+|+.+.+++..+...|...+++ .++.. ..++|++++++..+..+..+ ...-.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V---------~~~~l------~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g 70 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPL---------VSFHP------YLNQGIALCKYTTREEANKAQMALNNCVLAN 70 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCE---------EEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCE---------EEEEE------cCCCcEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 46779999999999999999999999998 33222 23688888888777544432 122234
Q ss_pred CeEEEcCCCCCCCHHHHHHHHh
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQ 99 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~ 99 (171)
++|.|. ..+++++..+|.
T Consensus 71 r~I~V~----~A~e~~~~~~~~ 88 (89)
T 2wbr_A 71 TTIFAE----SPSENEVQSIMQ 88 (89)
T ss_dssp EEEEEE----CCCHHHHHHHHC
T ss_pred cEEEEE----ECCHHHHHHHhh
Confidence 556552 236777777664
No 322
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.95 E-value=0.048 Score=33.67 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=24.0
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~f~~~G~v 42 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERDLREVFSKYGPI 42 (95)
T ss_dssp GCEEEESCCSSCCHHHHHHHHHTTSCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCe
Confidence 569999999999999999999887766
No 323
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.94 E-value=0.06 Score=33.67 Aligned_cols=27 Identities=15% Similarity=0.050 Sum_probs=24.1
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 18 ~~l~v~nlp~~~t~~~l~~~F~~~G~i 44 (100)
T 2do4_A 18 HKLFISGLPFSCTKEELEEICKAHGTV 44 (100)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCe
Confidence 569999999999999999999887765
No 324
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.68 E-value=0.22 Score=30.90 Aligned_cols=27 Identities=15% Similarity=0.010 Sum_probs=24.6
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 42 (99)
T 2cpj_A 16 SRLFVGNLPPDITEEEMRKLFEKYGKA 42 (99)
T ss_dssp TEEEEESCCTTCCHHHHHHHTSTTCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCCe
Confidence 479999999999999999999998776
No 325
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.65 E-value=0.17 Score=32.35 Aligned_cols=28 Identities=4% Similarity=-0.008 Sum_probs=24.5
Q ss_pred eeeeecCceeecccchhhc---ccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLI---HNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~---~~~~~~~~~ 31 (171)
...|||+++++++++..+. ..|...+++
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i 45 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKI 45 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCE
Confidence 3569999999999999998 889887776
No 326
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=83.22 E-value=0.065 Score=33.07 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=24.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..|||+++++++++..+...|...+++
T Consensus 17 ~~l~v~nlp~~~~~~~l~~~F~~~G~i 43 (95)
T 2ywk_A 17 RTVFVGNLEARVREEILYELFLQAGPL 43 (95)
T ss_dssp GEEEEECCCTTCCHHHHHHHHGGGSCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCE
Confidence 579999999999999999999887766
No 327
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=82.55 E-value=0.062 Score=32.55 Aligned_cols=27 Identities=4% Similarity=0.044 Sum_probs=24.4
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+|+.+++++..+...|...+++
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 31 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYGKI 31 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCE
Confidence 579999999999999999999887766
No 328
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=82.52 E-value=0.072 Score=33.68 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=24.6
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+|+.+++++..+...|...+++
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i 56 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTL 56 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3679999999999999999999887765
No 329
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.69 E-value=0.22 Score=31.50 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=24.7
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..|||+|+.+++++..+...|...+.+
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~v 42 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLPFGKV 42 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 579999999999999999999988776
No 330
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.65 E-value=0.16 Score=33.30 Aligned_cols=27 Identities=4% Similarity=0.010 Sum_probs=25.0
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..|||+|+.++++++.+...|...+.+
T Consensus 32 ~~LfVgNLp~~vte~dL~~lF~~fG~V 58 (119)
T 2ad9_A 32 RVIHIRKLPIDVTEGEVISLGLPFGKV 58 (119)
T ss_dssp SEEEEESCCTTCCHHHHHHHHTTTSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 569999999999999999999998887
No 331
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=81.53 E-value=0.043 Score=36.60 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=24.1
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..|||+++.++++++.+...|...+++
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~G~i 69 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERYGPI 69 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHHSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 579999999999999999999887766
No 332
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.41 E-value=0.026 Score=36.91 Aligned_cols=49 Identities=12% Similarity=-0.009 Sum_probs=35.0
Q ss_pred eeeec--CceeecccchhhcccCCcCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCC
Q 030819 5 GFLPV--PTTYFNINQNLLIHNLTRHSPAPATPFTIKRRDFDSLFSLRQGRGRGACFPLACLPPSP 68 (171)
Q Consensus 5 ~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (171)
..||| |++.++.+++.+...|...+.+ .+... ...++++|+.+..+..+
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~fG~v---------~~v~i------~~~rgfaFV~f~~~~~A 76 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKCGLV---------DALLM------PPNKPYSFARYRTTEES 76 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHHSCE---------EEEEC------CTTCSCEEEEESSHHHH
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhcCCe---------EEEEE------eCCCCEEEEEECCHHHH
Confidence 35999 8899999999999999998866 11111 12367888777765543
No 333
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=81.39 E-value=0.2 Score=31.22 Aligned_cols=28 Identities=7% Similarity=-0.136 Sum_probs=25.0
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.+++++..+...|...+.+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i 54 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFI 54 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCE
Confidence 3679999999999999999999888776
No 334
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.38 E-value=0.047 Score=33.97 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=24.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.++++++.+...|...+++
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i 32 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFSKVGAI 32 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 579999999999999999999887766
No 335
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.15 E-value=0.22 Score=31.14 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=24.7
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.+++++..+...|...+++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v 42 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKI 42 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3579999999999999999999887765
No 336
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=79.98 E-value=0.23 Score=32.04 Aligned_cols=25 Identities=8% Similarity=-0.200 Sum_probs=23.2
Q ss_pred eeeecCceeecccchhhcccCCcCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHS 29 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~ 29 (171)
+.|||+|+.++.+++.+.+.|...+
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G 53 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENS 53 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhC
Confidence 5799999999999999999998877
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=78.33 E-value=0.24 Score=33.03 Aligned_cols=28 Identities=11% Similarity=-0.142 Sum_probs=25.3
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+|+.+++++..+...|...+.+
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i 72 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDF 72 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCc
Confidence 3579999999999999999999998877
No 338
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.23 E-value=0.16 Score=31.47 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=24.1
Q ss_pred eeeeecCceeecccchhhc----ccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLI----HNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~----~~~~~~~~~ 31 (171)
.+.|||+|+.++++++.+. ..|...+++
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v 40 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKV 40 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcE
Confidence 3679999999999999998 888887665
No 339
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.41 E-value=0.33 Score=31.05 Aligned_cols=27 Identities=4% Similarity=-0.049 Sum_probs=24.6
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+|+.+++++..+...|...+++
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i 37 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSL 37 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 579999999999999999999988776
No 340
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.32 E-value=0.13 Score=32.80 Aligned_cols=28 Identities=7% Similarity=-0.032 Sum_probs=24.5
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.++++++.+...|...+++
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i 42 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVV 42 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3579999999999999999999887765
No 341
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.25 E-value=0.26 Score=31.30 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=25.1
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
...|||+|+.+++++..+...|...+.+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V 42 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTI 42 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCE
Confidence 3579999999999999999999988776
No 342
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.43 E-value=0.34 Score=30.62 Aligned_cols=27 Identities=7% Similarity=-0.112 Sum_probs=24.3
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||+++.+++++..+...|...+++
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v 49 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAI 49 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 579999999999999999999887766
No 343
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=76.17 E-value=9 Score=22.28 Aligned_cols=68 Identities=9% Similarity=0.202 Sum_probs=41.0
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhcCCC-----eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 030819 79 RLFVS-GLSFRTSEDSLRNAFQGFGQ-----LVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGMHGKFLDGRVIFVE 152 (171)
Q Consensus 79 ~l~V~-nl~~~~~~~~l~~~f~~~G~-----i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 152 (171)
++|+. +-...+...+|..++..-+. |-.+.+.. .|.||+-.. +.+..++..|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 45554 22334666777777765443 44555532 378988864 56778889999999999999988
Q ss_pred Eec
Q 030819 153 IAK 155 (171)
Q Consensus 153 ~~~ 155 (171)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 344
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=75.44 E-value=0.27 Score=31.24 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=25.0
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
...|||+|++++.++..+...|...+.+
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V 48 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPI 48 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCE
Confidence 3469999999999999999999998777
No 345
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=68.00 E-value=0.36 Score=34.23 Aligned_cols=27 Identities=4% Similarity=-0.129 Sum_probs=24.5
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
+.|||++++++.+...+...|...+++
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v 136 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQV 136 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCE
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCE
Confidence 569999999999999999999998776
No 346
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.58 E-value=1.1 Score=28.28 Aligned_cols=28 Identities=7% Similarity=-0.167 Sum_probs=24.6
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
-+.|||+|+.+++++..+...|...+++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i 42 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDV 42 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCE
Confidence 3679999999999999999999887665
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=63.93 E-value=1 Score=28.78 Aligned_cols=28 Identities=7% Similarity=-0.167 Sum_probs=24.2
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+|+.++++++.+...|...+++
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v 43 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDV 43 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3679999999999999999999887655
No 348
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=60.09 E-value=2.4 Score=26.73 Aligned_cols=28 Identities=14% Similarity=0.050 Sum_probs=25.0
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+|+.+++++..+...|...+++
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i 58 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPM 58 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCE
Confidence 3579999999999999999999988776
No 349
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=58.27 E-value=2.6 Score=26.40 Aligned_cols=28 Identities=0% Similarity=-0.106 Sum_probs=25.3
Q ss_pred eeeeecCceeec-ccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFN-INQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~-~~~~~~~~~~~~~~~~ 31 (171)
.+.|||+++.++ +++..+...|...+++
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v 55 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRV 55 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCe
Confidence 468999999999 9999999999988876
No 350
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=55.22 E-value=2.7 Score=27.53 Aligned_cols=27 Identities=11% Similarity=0.168 Sum_probs=24.8
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
.+|||+|+.+.++++.+...|...+.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V 52 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKV 52 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCE
Confidence 468999999999999999999998887
No 351
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=54.51 E-value=2.9 Score=27.73 Aligned_cols=27 Identities=7% Similarity=0.210 Sum_probs=25.0
Q ss_pred eeeecCceeecccchhhcccCCcCCCC
Q 030819 5 GFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
..|||+|+.|.++++.+...|...+.+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V 55 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTV 55 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCE
Confidence 468999999999999999999998888
No 352
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=45.63 E-value=3.2 Score=28.68 Aligned_cols=28 Identities=7% Similarity=0.224 Sum_probs=25.0
Q ss_pred eeeeecCceeecccchhhcccCCcCCCC
Q 030819 4 LGFLPVPTTYFNINQNLLIHNLTRHSPA 31 (171)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 31 (171)
...|||+|+.++++++.+...|...+.+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V 73 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTV 73 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCE
Confidence 3569999999999999999999998877
No 353
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=34.71 E-value=67 Score=19.50 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=21.5
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCC
Q 030819 103 QLVEVNLVMDKIANRPRGFAFLRYAT 128 (171)
Q Consensus 103 ~i~~~~~~~~~~~g~~~g~~fv~f~~ 128 (171)
+|.++++..-...|+-+++|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887776678999999999975
No 354
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=34.06 E-value=87 Score=21.31 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=28.4
Q ss_pred CCHHHHHHHHhcCCCeE---EEEEeecCCCCCcceEEEEE
Q 030819 89 TSEDSLRNAFQGFGQLV---EVNLVMDKIANRPRGFAFLR 125 (171)
Q Consensus 89 ~~~~~l~~~f~~~G~i~---~~~~~~~~~~g~~~g~~fv~ 125 (171)
.++++|+++-.+.|.+. .+.+..+..+|..+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58899999999999863 45666664489888888754
No 355
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=33.14 E-value=44 Score=28.14 Aligned_cols=56 Identities=5% Similarity=0.134 Sum_probs=41.2
Q ss_pred cCCCCCCCHHHHHHHHh----cCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 030819 83 SGLSFRTSEDSLRNAFQ----GFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (171)
Q Consensus 83 ~nl~~~~~~~~l~~~f~----~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 139 (171)
+..+++.+-.||..+|. .+|-|.++.+...+ -...+.++++.|.+.+++..++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 34556666678899884 57788888776655 3445568899999999988888765
No 356
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=29.50 E-value=89 Score=19.52 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCC
Q 030819 103 QLVEVNLVMDKIANRPRGFAFLRYAT 128 (171)
Q Consensus 103 ~i~~~~~~~~~~~g~~~g~~fv~f~~ 128 (171)
.|.++++..-...|+-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766678999999999975
No 357
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=29.12 E-value=92 Score=19.65 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCCCCcceEEEEEeCC
Q 030819 103 QLVEVNLVMDKIANRPRGFAFLRYAT 128 (171)
Q Consensus 103 ~i~~~~~~~~~~~g~~~g~~fv~f~~ 128 (171)
.|.++++..-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788877766678899999999975
No 358
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.49 E-value=1.6e+02 Score=20.30 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=36.8
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hcCCCeEEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHH
Q 030819 79 RLFVSGLSF-R--------TSEDSLRNAF--QGFGQLVEVNLVMDKIANRPRGFAFLRYA-TEEESRRAIE 137 (171)
Q Consensus 79 ~l~V~nl~~-~--------~~~~~l~~~f--~~~G~i~~~~~~~~~~~g~~~g~~fv~f~-~~~~a~~al~ 137 (171)
++.|-|+|. . .+...|++.| ..|.++. +....++ .| +.|++.|.|. +-.....|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-LG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-SB-EEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-CC-CceeEEEEecCChHHHHHHHH
Confidence 556677775 1 3447889967 8998866 4444444 23 6699999997 4455555554
No 359
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.54 E-value=52 Score=24.30 Aligned_cols=31 Identities=13% Similarity=0.352 Sum_probs=24.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEE
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNL 109 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~ 109 (171)
.-+.|+|+|+.++...|..++.. +.+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46789999999999999999977 55554433
No 360
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.89 E-value=1e+02 Score=16.83 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=40.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 030819 78 TRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEG 138 (171)
Q Consensus 78 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 138 (171)
.++.|.++.=.-....++..+.. ..|..+.+-... +-+.|.|.+.+....+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHH
Confidence 46788888888888899999998 778887774432 5677888766677777764
No 361
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=22.28 E-value=1.4e+02 Score=18.25 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=45.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 139 (171)
...+-+-+-|+|..+-..++--...-.|---.|..+. |-|.+.|.+.++..-|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 3466788889999999888877777777666666542 67999999999999998876
No 362
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=25.44 E-value=22 Score=22.50 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCcceEE--EEEeCCHHHHHHHHHHhCCce
Q 030819 75 QPKTRLFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFA--FLRYATEEESRRAIEGMHGKF 143 (171)
Q Consensus 75 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~--fv~f~~~~~a~~al~~l~g~~ 143 (171)
+...+|-+... .+++++..+..+.+ +..+.+......|+. .|. +-.|.+.++|.+|+..|....
T Consensus 23 ~~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 23 SSHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 33455555443 34556777776665 334444432223332 233 337889999999999887544
Done!