Query 030820
Match_columns 171
No_of_seqs 164 out of 550
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:38:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 99.2 1.8E-11 6.1E-16 88.1 4.2 93 2-100 3-100 (101)
2 2dja_A Midline-2; tripartite m 95.2 0.0081 2.8E-07 41.2 1.9 57 39-101 2-60 (84)
3 2ffw_A Midline-1; B-BOX, ring 94.4 0.022 7.6E-07 39.3 2.6 44 2-45 30-76 (78)
4 3ddt_A E3 ubiquitin-protein li 93.8 0.021 7.2E-07 35.4 1.3 41 54-100 6-47 (48)
5 2did_A Tripartite motif protei 93.5 0.041 1.4E-06 34.6 2.4 40 55-101 9-49 (53)
6 2jun_A Midline-1; B-BOX, TRIM, 93.3 0.019 6.3E-07 40.4 0.5 43 55-97 4-49 (101)
7 2yvr_A Transcription intermedi 93.3 0.022 7.7E-07 35.4 0.9 40 55-100 7-46 (50)
8 1fre_A Nuclear factor XNF7; zi 93.0 0.045 1.5E-06 32.8 1.8 29 56-85 5-34 (42)
9 2yrg_A Tripartite motif-contai 92.3 0.071 2.4E-06 34.6 2.2 40 55-101 15-55 (59)
10 2d8u_A Ubiquitin ligase TRIM63 92.1 0.039 1.3E-06 35.8 0.8 41 54-100 8-49 (64)
11 2csv_A Tripartite motif protei 90.3 0.11 3.6E-06 34.7 1.5 55 39-101 4-58 (72)
12 2egm_A Tripartite motif-contai 88.0 0.072 2.5E-06 34.4 -0.6 31 54-85 18-49 (57)
13 2did_A Tripartite motif protei 87.9 0.34 1.2E-05 30.3 2.6 41 3-50 9-50 (53)
14 2yrg_A Tripartite motif-contai 84.1 0.73 2.5E-05 29.7 2.7 41 3-50 15-56 (59)
15 2yvr_A Transcription intermedi 84.1 0.71 2.4E-05 28.3 2.6 42 3-50 7-48 (50)
16 2ffw_A Midline-1; B-BOX, ring 82.6 0.25 8.4E-06 33.9 -0.1 43 54-96 30-75 (78)
17 2dja_A Midline-2; tripartite m 79.2 1.3 4.4E-05 29.9 2.7 41 4-50 20-61 (84)
18 2d8u_A Ubiquitin ligase TRIM63 78.0 0.95 3.2E-05 29.0 1.6 43 3-51 9-52 (64)
19 3ddt_A E3 ubiquitin-protein li 77.6 1.5 5.2E-05 26.7 2.4 37 5-47 9-46 (48)
20 1fre_A Nuclear factor XNF7; zi 77.0 0.84 2.9E-05 27.0 1.1 29 4-33 5-34 (42)
21 2egm_A Tripartite motif-contai 70.6 2 7E-05 27.3 1.8 30 4-34 20-50 (57)
22 2csv_A Tripartite motif protei 68.7 2 6.9E-05 28.3 1.5 40 3-49 19-58 (72)
23 2d8v_A Zinc finger FYVE domain 63.5 5.9 0.0002 27.0 3.0 46 3-50 9-55 (67)
24 2lri_C Autoimmune regulator; Z 61.6 2.9 9.9E-05 27.8 1.2 47 3-63 13-59 (66)
25 1z60_A TFIIH basal transcripti 59.7 2.7 9.2E-05 27.8 0.8 32 4-35 17-51 (59)
26 3pfq_A PKC-B, PKC-beta, protei 59.0 4.9 0.00017 36.8 2.6 76 3-89 49-145 (674)
27 2d8v_A Zinc finger FYVE domain 56.2 3.7 0.00013 28.0 1.0 46 53-100 7-53 (67)
28 2fc7_A ZZZ3 protein; structure 55.4 19 0.00064 24.8 4.6 45 56-100 23-74 (82)
29 1mm2_A MI2-beta; PHD, zinc fin 54.9 11 0.00037 24.3 3.1 47 3-63 10-56 (61)
30 2yql_A PHD finger protein 21A; 54.7 8.1 0.00028 24.3 2.4 46 3-62 10-55 (56)
31 1f62_A Transcription factor WS 54.6 6.1 0.00021 24.2 1.8 48 4-62 2-49 (51)
32 2jne_A Hypothetical protein YF 50.7 11 0.00039 27.4 2.9 26 1-30 31-56 (101)
33 4hc9_A Trans-acting T-cell-spe 49.7 7.3 0.00025 28.7 1.8 80 2-82 5-88 (115)
34 2e6r_A Jumonji/ARID domain-con 45.8 13 0.00044 26.0 2.5 50 3-63 17-66 (92)
35 1v5n_A PDI-like hypothetical p 41.8 18 0.00061 25.1 2.7 42 41-88 34-75 (89)
36 1xwh_A Autoimmune regulator; P 41.2 16 0.00054 23.8 2.2 47 3-63 9-55 (66)
37 3shb_A E3 ubiquitin-protein li 40.5 18 0.00063 24.6 2.6 14 21-34 40-53 (77)
38 2jrp_A Putative cytoplasmic pr 40.1 31 0.001 24.1 3.7 59 1-84 1-61 (81)
39 2kwj_A Zinc finger protein DPF 39.3 16 0.00053 26.3 2.2 48 4-62 60-107 (114)
40 4gne_A Histone-lysine N-methyl 38.0 34 0.0012 24.7 3.8 64 3-83 16-86 (107)
41 2xzl_A ATP-dependent helicase 37.1 11 0.00037 35.8 1.3 81 2-82 11-106 (802)
42 2pv0_B DNA (cytosine-5)-methyl 36.5 17 0.00057 32.2 2.2 71 1-81 49-122 (386)
43 2yqq_A Zinc finger HIT domain- 36.0 14 0.00049 24.0 1.4 28 4-33 14-42 (56)
44 2wjy_A Regulator of nonsense t 35.7 12 0.00042 35.4 1.3 80 2-81 6-100 (800)
45 2puy_A PHD finger protein 21A; 35.0 24 0.00084 22.3 2.4 48 2-63 5-52 (60)
46 1tot_A CREB-binding protein; z 32.6 14 0.00047 23.3 0.8 30 2-31 6-37 (52)
47 3asl_A E3 ubiquitin-protein li 31.9 32 0.0011 22.7 2.6 15 20-34 31-45 (70)
48 2e6s_A E3 ubiquitin-protein li 31.8 32 0.0011 23.2 2.7 15 20-34 39-53 (77)
49 1fp0_A KAP-1 corepressor; PHD 31.1 31 0.0011 24.2 2.6 47 3-63 26-72 (88)
50 2epr_A POZ-, at HOOK-, and zin 30.8 8.6 0.00029 22.0 -0.4 37 21-61 11-47 (48)
51 2ro1_A Transcription intermedi 29.8 36 0.0012 26.5 3.0 48 3-64 3-50 (189)
52 1v6g_A Actin binding LIM prote 29.5 18 0.0006 23.6 1.0 20 14-33 3-26 (81)
53 2ysm_A Myeloid/lymphoid or mix 29.2 30 0.001 24.3 2.2 14 21-34 68-81 (111)
54 1x4s_A Protein FON, zinc finge 28.0 17 0.00059 24.0 0.7 30 4-34 13-46 (59)
55 1qxf_A GR2, 30S ribosomal prot 27.8 14 0.00048 25.0 0.2 30 1-31 6-35 (66)
56 3u5c_b RP61, YS20, 40S ribosom 26.5 20 0.00068 25.2 0.8 29 1-30 33-61 (82)
57 2k0a_A PRE-mRNA-splicing facto 26.5 14 0.00048 27.3 0.0 23 54-81 57-79 (109)
58 3v43_A Histone acetyltransfera 26.2 47 0.0016 23.5 2.8 35 21-61 76-110 (112)
59 3j20_W 30S ribosomal protein S 24.5 18 0.00061 24.2 0.3 30 1-31 14-43 (63)
60 2lbm_A Transcriptional regulat 24.3 65 0.0022 24.4 3.5 29 54-82 63-91 (142)
61 2xzm_6 RPS27E; ribosome, trans 24.2 20 0.00069 25.1 0.5 29 1-30 31-59 (81)
62 3a1b_A DNA (cytosine-5)-methyl 23.6 53 0.0018 25.5 2.9 70 2-81 36-108 (159)
63 3iz6_X 40S ribosomal protein S 23.6 21 0.0007 25.3 0.4 29 1-30 35-63 (86)
64 1faq_A RAF-1; transferase, ser 23.2 27 0.00092 21.1 0.9 25 3-34 15-39 (52)
65 2ytg_A ZFP-95, zinc finger pro 22.9 27 0.00091 19.3 0.8 27 20-47 10-36 (46)
66 2yt5_A Metal-response element- 20.7 33 0.0011 21.8 1.0 53 3-64 7-62 (66)
67 2e5r_A Dystrobrevin alpha; ZZ 20.3 87 0.003 20.2 3.0 30 3-32 12-45 (63)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=99.16 E-value=1.8e-11 Score=88.07 Aligned_cols=93 Identities=23% Similarity=0.446 Sum_probs=77.5
Q ss_pred CccccccCC---CCcEEEcccccccchhhhchhhhcCcccccCcccc-eecccCCCCCCCchhcccceEEEecCCccccc
Q 030820 2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQRL-LLQCLSNKLPPCDICQEKAAFIFCVEDRALFC 77 (171)
Q Consensus 2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~Rv-pL~~~~~~~p~Cd~C~~~~A~v~C~~D~a~LC 77 (171)
+..|++|.+ .+|+.+|..+.+.||..|...+|..++.+++|.++ |+...+.+...|+.|+..+..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 467999984 68999999999999999999999988888899987 55544445678999998889999999999999
Q ss_pred cccCC-CccCCCCCCCCCcceeee
Q 030820 78 KDCDE-PIHSPGSLSANHQRFLAT 100 (171)
Q Consensus 78 ~~CD~-~vH~an~ls~~HqR~~l~ 100 (171)
..|.. ..| +.|..++|.
T Consensus 83 ~~C~~~~~H------~~H~~~~l~ 100 (101)
T 2jun_A 83 ALCKLVGRH------RDHQVAALS 100 (101)
T ss_dssp HHHHHHTTT------SSSCBCCCC
T ss_pred hhcCCCCCc------CCCCeecCC
Confidence 99986 667 456665553
No 2
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=95.17 E-value=0.0081 Score=41.24 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=41.3
Q ss_pred ccCcccceeccc-CCCCCCCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceeeec
Q 030820 39 ASKHQRLLLQCL-SNKLPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG 101 (171)
Q Consensus 39 a~rH~RvpL~~~-~~~~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l~~ 101 (171)
+++|+.+..... ......|+.|+..+..+||..|...+|..|.. ..| ..|..++|..
T Consensus 2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~e 60 (84)
T 2dja_A 2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLND 60 (84)
T ss_dssp CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCS
T ss_pred CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHH
Confidence 356776665432 23355799998788899999999999999986 556 4566666654
No 3
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=94.41 E-value=0.022 Score=39.29 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=36.8
Q ss_pred CccccccCC---CCcEEEcccccccchhhhchhhhcCcccccCcccc
Q 030820 2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQRL 45 (171)
Q Consensus 2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~Rv 45 (171)
.+.||+|.. .+|+..|..+.+.||..|=...|...+.+++|.=+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 368999976 67999999999999999987779877777888643
No 4
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=93.76 E-value=0.021 Score=35.40 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=32.3
Q ss_pred CCCCchhcccceEEEecCCccccccccC-CCccCCCCCCCCCcceeee
Q 030820 54 LPPCDICQEKAAFIFCVEDRALFCKDCD-EPIHSPGSLSANHQRFLAT 100 (171)
Q Consensus 54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD-~~vH~an~ls~~HqR~~l~ 100 (171)
...|+.|+.++..+||..|...+|..|. ...| +.|..++|+
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 47 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ 47 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence 4569999977889999999999999996 4456 457666653
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=93.51 E-value=0.041 Score=34.65 Aligned_cols=40 Identities=28% Similarity=0.514 Sum_probs=32.3
Q ss_pred CCCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceeeec
Q 030820 55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG 101 (171)
Q Consensus 55 p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l~~ 101 (171)
..|+.|+ ++..+||..|...+|..|.. ..| +.|..++|..
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~e 49 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSG 49 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCC
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHH
Confidence 3599998 67899999999999999986 566 5677776653
No 6
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.34 E-value=0.019 Score=40.40 Aligned_cols=43 Identities=21% Similarity=0.526 Sum_probs=35.9
Q ss_pred CCCchhcc---cceEEEecCCccccccccCCCccCCCCCCCCCcce
Q 030820 55 PPCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRF 97 (171)
Q Consensus 55 p~Cd~C~~---~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR~ 97 (171)
..|++|.+ .+|..+|..+...||..|...+|..+....+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 35999984 57999999999999999998888777666788765
No 7
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=93.34 E-value=0.022 Score=35.42 Aligned_cols=40 Identities=25% Similarity=0.592 Sum_probs=32.6
Q ss_pred CCCchhcccceEEEecCCccccccccCCCccCCCCCCCCCcceeee
Q 030820 55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLAT 100 (171)
Q Consensus 55 p~Cd~C~~~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR~~l~ 100 (171)
..|+.|+..+..+||..|...+|..|....| +.|..++|.
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ 46 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLE 46 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETT
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHH
Confidence 3599998888999999999999999987656 467766664
No 8
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=92.98 E-value=0.045 Score=32.79 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=24.5
Q ss_pred CCchhcccceEEEecCCccccccccCC-Ccc
Q 030820 56 PCDICQEKAAFIFCVEDRALFCKDCDE-PIH 85 (171)
Q Consensus 56 ~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH 85 (171)
.|+.|+ ++..+||..|...+|..|.. .-|
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence 599997 56889999999999999986 455
No 9
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.28 E-value=0.071 Score=34.62 Aligned_cols=40 Identities=28% Similarity=0.648 Sum_probs=32.1
Q ss_pred CCCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceeeec
Q 030820 55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG 101 (171)
Q Consensus 55 p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l~~ 101 (171)
..|+.|+ ++..+||..|...+|..|.. .-| +.|..++|..
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~e 55 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSG 55 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCS
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHH
Confidence 4599997 46889999999999999986 556 5677777764
No 10
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.14 E-value=0.039 Score=35.84 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=32.0
Q ss_pred CCCCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceeee
Q 030820 54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLAT 100 (171)
Q Consensus 54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l~ 100 (171)
...|+.|+..+..+||..|...+|..|.. ..| +.|..++|.
T Consensus 8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 49 (64)
T 2d8u_A 8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ 49 (64)
T ss_dssp CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred CCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHH
Confidence 34699998888899999999999999974 466 356665554
No 11
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=90.26 E-value=0.11 Score=34.73 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=38.1
Q ss_pred ccCcccceecccCCCCCCCchhcccceEEEecCCccccccccCCCccCCCCCCCCCcceeeec
Q 030820 39 ASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATG 101 (171)
Q Consensus 39 a~rH~RvpL~~~~~~~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR~~l~~ 101 (171)
+++|+-+.-. .......|+.|+ .+..+||..|...+|..|....| +.|..++|..
T Consensus 4 ~~~H~L~~p~-~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~e 58 (72)
T 2csv_A 4 GSSGQLLEPI-RDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEE 58 (72)
T ss_dssp SCCCCCCCCS-SSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHH
T ss_pred ccCCcccCCc-cccccCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHH
Confidence 3556644321 112345799995 77899999999999999976556 4677777653
No 12
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.03 E-value=0.072 Score=34.42 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=25.8
Q ss_pred CCCCchhcccceEEEecCCccccccccCC-Ccc
Q 030820 54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIH 85 (171)
Q Consensus 54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH 85 (171)
...|+.|+ ++..+||..|...+|..|.. ..|
T Consensus 18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 18 QGICPKHQ-EALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp TSBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred cCcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence 44699996 66899999999999999985 455
No 13
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=87.94 E-value=0.34 Score=30.25 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=31.1
Q ss_pred ccccccCCCCcEEEcccccccchhhhch-hhhcCcccccCcccceeccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~ 50 (171)
..|..-+ .+-.+||..|...+|..|-. .-| +.|..+||.++
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 50 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP 50 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence 4566665 56789999999999999985 455 56777887654
No 14
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.11 E-value=0.73 Score=29.68 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=30.5
Q ss_pred ccccccCCCCcEEEcccccccchhhhch-hhhcCcccccCcccceeccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~ 50 (171)
..|..-+ .+-.+||..|...+|..|.. .-| +.|..+||.++
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea 56 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP 56 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence 3465555 46789999999999999986 455 46777777554
No 15
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=84.06 E-value=0.71 Score=28.32 Aligned_cols=42 Identities=24% Similarity=0.613 Sum_probs=30.9
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceeccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCL 50 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~ 50 (171)
..|..-...+-.+||..|...+|..|-..-| +.|..++|.++
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ea 48 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLEDA 48 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC-
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHHH
Confidence 3566664456789999999999999976555 46777777543
No 16
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=82.61 E-value=0.25 Score=33.92 Aligned_cols=43 Identities=21% Similarity=0.502 Sum_probs=34.7
Q ss_pred CCCCchhcc---cceEEEecCCccccccccCCCccCCCCCCCCCcc
Q 030820 54 LPPCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96 (171)
Q Consensus 54 ~p~Cd~C~~---~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR 96 (171)
...|++|.. .+|...|..+.+.||..|-...|...+..++|+-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 456999976 5689999999999999998777876666667764
No 17
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=79.19 E-value=1.3 Score=29.90 Aligned_cols=41 Identities=27% Similarity=0.503 Sum_probs=30.8
Q ss_pred cccccCCCCcEEEcccccccchhhhch-hhhcCcccccCcccceeccc
Q 030820 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (171)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~ 50 (171)
.|..-+..+-.+||..|...+|..|-. .-| +.|.-+||.++
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 61 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDR 61 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSS
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHH
Confidence 465554456789999999999999986 556 46777777554
No 18
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=77.97 E-value=0.95 Score=28.99 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=31.6
Q ss_pred ccccccCCCCcEEEcccccccchhhhch-hhhcCcccccCcccceecccC
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCLS 51 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~~ 51 (171)
..|..-...+-.+||..|...+|..|-. .-| +.|.-+||.++.
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~~a~ 52 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSVF 52 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTTCC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHHHHH
Confidence 3566664456788999999999999975 366 367778876543
No 19
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=77.64 E-value=1.5 Score=26.65 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=25.7
Q ss_pred ccccCCCCcEEEcccccccchhhhc-hhhhcCcccccCccccee
Q 030820 5 CDVCEKAPATVICCADEAALCAKCD-VEVHAANKLASKHQRLLL 47 (171)
Q Consensus 5 Cd~C~~~~A~vyC~aD~A~LC~~CD-~~vH~aN~la~rH~RvpL 47 (171)
|..=++.+-.+||..|...+|..|- ..-|. .|.-+||
T Consensus 9 C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l 46 (48)
T 3ddt_A 9 CKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPL 46 (48)
T ss_dssp CSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEEC
T ss_pred CCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeC
Confidence 4433334577999999999999996 34563 4665665
No 20
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=76.95 E-value=0.84 Score=26.96 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=22.6
Q ss_pred cccccCCCCcEEEcccccccchhhhch-hhh
Q 030820 4 QCDVCEKAPATVICCADEAALCAKCDV-EVH 33 (171)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH 33 (171)
+|..-+ .+-.+||..|...+|..|-. .-|
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence 465555 56788999999999999975 445
No 21
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.60 E-value=2 Score=27.33 Aligned_cols=30 Identities=27% Similarity=0.622 Sum_probs=23.6
Q ss_pred cccccCCCCcEEEcccccccchhhhch-hhhc
Q 030820 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHA 34 (171)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~ 34 (171)
+|..-+ .+-.+||..|...+|..|.. .-|.
T Consensus 20 ~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 20 ICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp BCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 466654 57889999999999999986 5563
No 22
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=68.71 E-value=2 Score=28.26 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=30.0
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC 49 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~ 49 (171)
..|..-+ .+-.+||..|...+|..|-..-| +.|.-++|.+
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~e 58 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEE 58 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHH
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHH
Confidence 3565554 67789999999999999976555 4677777754
No 23
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=63.48 E-value=5.9 Score=26.97 Aligned_cols=46 Identities=28% Similarity=0.396 Sum_probs=37.5
Q ss_pred ccccccCCCCcEEEcccc-cccchhhhchhhhcCcccccCcccceeccc
Q 030820 3 IQCDVCEKAPATVICCAD-EAALCAKCDVEVHAANKLASKHQRLLLQCL 50 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD-~A~LC~~CD~~vH~aN~la~rH~RvpL~~~ 50 (171)
+-|-+|.. .|++.|..+ .-.+|.+|=+..|. ..-.+.|+-+++...
T Consensus 9 pWC~ICne-DAtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~ 55 (67)
T 2d8v_A 9 PWCCICNE-DATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPR 55 (67)
T ss_dssp SSCTTTCS-CCCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCS
T ss_pred CeeEEeCC-CCeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCC
Confidence 45889995 599999987 67899999999995 456689999988543
No 24
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=61.63 E-value=2.9 Score=27.79 Aligned_cols=47 Identities=17% Similarity=0.370 Sum_probs=29.4
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEK 63 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~ 63 (171)
..|.+|++. +...+|..|++..|.. - .+.||..++.....|..|...
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~-----C-l~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWR-----C-HFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHH-----H-HCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCC--------CeEEECCCCCCceecc-----c-CCCccCcCCCCCEECccccCC
Confidence 468899853 4466777888888742 1 134555555556667777543
No 25
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=59.69 E-value=2.7 Score=27.75 Aligned_cols=32 Identities=28% Similarity=0.669 Sum_probs=24.8
Q ss_pred cccccCCCC---cEEEcccccccchhhhchhhhcC
Q 030820 4 QCDVCEKAP---ATVICCADEAALCAKCDVEVHAA 35 (171)
Q Consensus 4 ~Cd~C~~~~---A~vyC~aD~A~LC~~CD~~vH~a 35 (171)
.|-.|...- .++.|..+...+|.+||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 366777643 24669999999999999999963
No 26
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=59.00 E-value=4.9 Score=36.81 Aligned_cols=76 Identities=18% Similarity=0.406 Sum_probs=23.0
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecc---------------------cCCCCCCCchhc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC---------------------LSNKLPPCDICQ 61 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~---------------------~~~~~p~Cd~C~ 61 (171)
..|+.|+.--.. ..-...-|..|...+|. +.|..++... .......|+.|+
T Consensus 49 ~~C~~C~~~i~g---~~~qg~~C~~C~~~~H~-----~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~ 120 (674)
T 3pfq_A 49 TFCSHCTDFIWG---FGKQGFQCQVCSFVVHK-----RCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCG 120 (674)
T ss_dssp -------------------------------------------------------------CCCCCEECCSSCCCCSSSC
T ss_pred Cccccccccccc---cCCceeECCCCCCCcCh-----hhcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCccc
Confidence 358888764322 24456677888888885 2344433321 001245799997
Q ss_pred ccceEEEecCCccccccccCCCccCCCC
Q 030820 62 EKAAFIFCVEDRALFCKDCDEPIHSPGS 89 (171)
Q Consensus 62 ~~~A~v~C~~D~a~LC~~CD~~vH~an~ 89 (171)
..- +......+-|..|...+|..+.
T Consensus 121 ~~l---~g~~~qg~~C~~C~~~~H~~C~ 145 (674)
T 3pfq_A 121 SLL---YGLIHQGMKCDTCMMNVHKRCV 145 (674)
T ss_dssp SCC---BBSSSCEECCSSSCCCBCSSTT
T ss_pred ccc---chhhcCccccccCCcchhhhhh
Confidence 763 3333456778888888887764
No 27
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=56.15 E-value=3.7 Score=27.98 Aligned_cols=46 Identities=30% Similarity=0.440 Sum_probs=35.8
Q ss_pred CCCCCchhcccceEEEecCC-ccccccccCCCccCCCCCCCCCcceeee
Q 030820 53 KLPPCDICQEKAAFIFCVED-RALFCKDCDEPIHSPGSLSANHQRFLAT 100 (171)
Q Consensus 53 ~~p~Cd~C~~~~A~v~C~~D-~a~LC~~CD~~vH~an~ls~~HqR~~l~ 100 (171)
.++-|-+|.+. |.+.|..+ .-+||..|-...|.. .--..|+-++..
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPYH 53 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECCC
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeecc
Confidence 36779999998 89999877 789999999888853 334567776653
No 28
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=55.39 E-value=19 Score=24.80 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=28.2
Q ss_pred CCchhcccce---EEEecCCcc----ccccccCCCccCCCCCCCCCcceeee
Q 030820 56 PCDICQEKAA---FIFCVEDRA----LFCKDCDEPIHSPGSLSANHQRFLAT 100 (171)
Q Consensus 56 ~Cd~C~~~~A---~v~C~~D~a----~LC~~CD~~vH~an~ls~~HqR~~l~ 100 (171)
.|+.|+..+. .+.|..+.. -||..|-........-...|....+.
T Consensus 23 ~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 23 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 4999997663 367877765 49999986544323222345554443
No 29
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=54.90 E-value=11 Score=24.25 Aligned_cols=47 Identities=23% Similarity=0.365 Sum_probs=28.4
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEK 63 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~ 63 (171)
..|.+|+.. +...+|..|++..|.. -+ ..||..++.....|..|...
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~-----Cl-~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHIH-----CL-NPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCSS-----SS-SSCCSSCCSSCCCCTTTTTT
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHccc-----cc-CCCcCcCCCCccCChhhcCc
Confidence 468888753 4677888899888852 11 12344444445556666544
No 30
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.68 E-value=8.1 Score=24.33 Aligned_cols=46 Identities=24% Similarity=0.501 Sum_probs=28.6
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhcc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQE 62 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~ 62 (171)
..|.+|++. +...+|..|++..|.. -+ ..||...+.....|+.|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~~H~~-----Cl-~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 10 DFCSVCRKS--------GQLLMCDTCSRVYHLD-----CL-DPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSCSSSCCS--------SCCEECSSSSCEECSS-----SS-SSCCCSCCCSSCCCHHHHC
T ss_pred CCCccCCCC--------CeEEEcCCCCcceECc-----cC-CCCcCCCCCCceEChhhhC
Confidence 568888864 4567788899888852 11 1245445555566776643
No 31
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=54.65 E-value=6.1 Score=24.24 Aligned_cols=48 Identities=29% Similarity=0.531 Sum_probs=27.9
Q ss_pred cccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhcc
Q 030820 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQE 62 (171)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~ 62 (171)
.|.+|++.. ..+...+|..|++..|.. -+ ..+|.+.+.....|+.|..
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~-----Cl-~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLF-----CL-RPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHH-----HH-CTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcc-----cC-CCCcCCCCCCcEECcCccc
Confidence 588888643 234667888999877752 11 1244444444555666643
No 32
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=50.67 E-value=11 Score=27.41 Aligned_cols=26 Identities=23% Similarity=0.634 Sum_probs=13.3
Q ss_pred CCccccccCCCCcEEEcccccccchhhhch
Q 030820 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (171)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~ 30 (171)
|...|-.|+..-. + .+..+.|..|+.
T Consensus 31 M~~~CP~Cq~eL~--~--~g~~~hC~~C~~ 56 (101)
T 2jne_A 31 MELHCPQCQHVLD--Q--DNGHARCRSCGE 56 (101)
T ss_dssp CCCBCSSSCSBEE--E--ETTEEEETTTCC
T ss_pred ccccCccCCCcce--e--cCCEEECccccc
Confidence 5666777764321 1 233444666663
No 33
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=49.70 E-value=7.3 Score=28.65 Aligned_cols=80 Identities=18% Similarity=0.365 Sum_probs=47.3
Q ss_pred CccccccCCCCcEEEccccc-ccchhhhc--hhhhcCcccccCcccceecccCCCCCCCchhcccceEEEe-cCCccccc
Q 030820 2 KIQCDVCEKAPATVICCADE-AALCAKCD--VEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFC-VEDRALFC 77 (171)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~aD~-A~LC~~CD--~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~~A~v~C-~~D~a~LC 77 (171)
...|..|+.....+|=..+. ..||..|. .+.|..|....+-.+.. .........|..|+......|- ..+...||
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~-~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL-SAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCC-CCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccc-cccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 46799999876666666554 47999999 45566665433222211 1122234568888887644443 22235778
Q ss_pred cccCC
Q 030820 78 KDCDE 82 (171)
Q Consensus 78 ~~CD~ 82 (171)
-.|-.
T Consensus 84 NaCgl 88 (115)
T 4hc9_A 84 NACGL 88 (115)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 77763
No 34
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.80 E-value=13 Score=25.97 Aligned_cols=50 Identities=22% Similarity=0.417 Sum_probs=30.8
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEK 63 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~ 63 (171)
..|.+|+.... .+...+|..|++..|.. -+ ..||..++.....|+.|...
T Consensus 17 ~~C~vC~~~~~-----~~~ll~CD~C~~~~H~~-----Cl-~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 17 YICQVCSRGDE-----DDKLLFCDGCDDNYHIF-----CL-LPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCSSSCCSGG-----GGGCEECTTTCCEECSS-----SS-SSCCSSCCSSCCCCHHHHHH
T ss_pred CCCccCCCcCC-----CCCEEEcCCCCchhccc-----cC-CCCcccCCCCCcCCccCcCc
Confidence 36888886431 34577888999888852 11 23455555555667776543
No 35
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=41.81 E-value=18 Score=25.10 Aligned_cols=42 Identities=24% Similarity=0.507 Sum_probs=27.5
Q ss_pred CcccceecccCCCCCCCchhcccceEEEecCCccccccccCCCccCCC
Q 030820 41 KHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPG 88 (171)
Q Consensus 41 rH~RvpL~~~~~~~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~~vH~an 88 (171)
.|.+.||.-.......|+.|.... ....+.|..|+..+|..+
T Consensus 34 ~Hp~H~L~L~~~~~~~C~~C~~~~------~~~~Y~C~~C~f~lH~~C 75 (89)
T 1v5n_A 34 LHEEHELELTRVQVYTCDKCEEEG------TIWSYHCDECDFDLHAKC 75 (89)
T ss_dssp TTTTSCEEEECCSSCCCTTTSCCC------CSCEEECTTTCCCCCHHH
T ss_pred CCCCCccEEeeCCCeEeCCCCCcC------CCcEEEcCCCCCeEcHHh
Confidence 344444543333345799999874 346788889999888654
No 36
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=41.21 E-value=16 Score=23.75 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=29.1
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEK 63 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~ 63 (171)
..|.+|+.. ....+|..|+...|.. -+. .||..++.....|..|...
T Consensus 9 ~~C~vC~~~--------g~ll~CD~C~~~fH~~-----Cl~-ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 9 DECAVCRDG--------GELICCDGCPRAFHLA-----CLS-PPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSBSSSSCC--------SSCEECSSCCCEECTT-----TSS-SCCSSCCSSCCCCHHHHHT
T ss_pred CCCccCCCC--------CCEEEcCCCChhhccc-----ccC-CCcCcCCCCCeECccccCc
Confidence 468888864 3566777898887852 111 2455555555667776554
No 37
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=40.50 E-value=18 Score=24.56 Aligned_cols=14 Identities=29% Similarity=0.907 Sum_probs=8.2
Q ss_pred cccchhhhchhhhc
Q 030820 21 EAALCAKCDVEVHA 34 (171)
Q Consensus 21 ~A~LC~~CD~~vH~ 34 (171)
...+|..|+...|.
T Consensus 40 ~ll~CD~C~~~yH~ 53 (77)
T 3shb_A 40 KQLMCDECDMAFHI 53 (77)
T ss_dssp GEEECTTTCCEEET
T ss_pred ceeEeCCCCCccCc
Confidence 44566666666663
No 38
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.11 E-value=31 Score=24.08 Aligned_cols=59 Identities=24% Similarity=0.502 Sum_probs=33.1
Q ss_pred CCccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhcccceEEEecCC--cccccc
Q 030820 1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVED--RALFCK 78 (171)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~~A~v~C~~D--~a~LC~ 78 (171)
|...|-.|+..... ....+.|..|+..+- +.. .|+.|+..... |..+ ..+||.
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~~~----------~~a---------fCPeCgq~Le~--lkACGA~~yFC~ 55 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKDFS----------LQA---------LCPDCRQPLQV--LKACGAVDYFCQ 55 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCEEE----------EEE---------ECSSSCSCCCE--EEETTEEEECCT
T ss_pred CCCCCCCCCCcccc----CCCceECccccccCC----------Ccc---------cCcchhhHHHH--HHhcCCcCeeec
Confidence 77889999865432 233455777774321 111 26666665433 2222 267888
Q ss_pred ccCCCc
Q 030820 79 DCDEPI 84 (171)
Q Consensus 79 ~CD~~v 84 (171)
.|..-+
T Consensus 56 ~C~~Li 61 (81)
T 2jrp_A 56 NGHGLI 61 (81)
T ss_dssp TTTCCC
T ss_pred cCCCEe
Confidence 886444
No 39
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=39.33 E-value=16 Score=26.27 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=28.0
Q ss_pred cccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhcc
Q 030820 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQE 62 (171)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~ 62 (171)
.|.+|+... ..+...+|..|++..|.. -...||..++.....|..|..
T Consensus 60 ~C~~C~~~~-----~~~~ll~Cd~C~~~yH~~------Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSE-----NDDQLLFCDDCDRGYHMY------CLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCT-----TTTTEEECSSSCCEEETT------TSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccC-----CCCceEEcCCCCcccccc------ccCCCccCCCCCCeECccccc
Confidence 355666532 134567888899888852 223356555555566766644
No 40
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.04 E-value=34 Score=24.69 Aligned_cols=64 Identities=27% Similarity=0.426 Sum_probs=37.8
Q ss_pred ccccccCCCCcEEEcccccccchh--hhchhhhcCcccccCcccceecccCCCCCCCc-----hhcccceEEEecCCccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCA--KCDVEVHAANKLASKHQRLLLQCLSNKLPPCD-----ICQEKAAFIFCVEDRAL 75 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~--~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd-----~C~~~~A~v~C~~D~a~ 75 (171)
..|.+|+.. ....+|. .|++..|.. - +.|..++.....|+ +|+.. +.++|..+-..
T Consensus 16 ~~C~~C~~~--------G~ll~CD~~~Cp~~fH~~-----C---l~L~~~P~g~W~Cp~c~C~~C~k~-~~~~C~~Cp~s 78 (107)
T 4gne_A 16 DYCFQCGDG--------GELVMCDKKDCPKAYHLL-----C---LNLTQPPYGKWECPWHQCDECSSA-AVSFCEFCPHS 78 (107)
T ss_dssp SSCTTTCCC--------SEEEECCSTTCCCEECTG-----G---GTCSSCCSSCCCCGGGBCTTTCSB-CCEECSSSSCE
T ss_pred CCCCcCCCC--------CcEeEECCCCCCcccccc-----c---CcCCcCCCCCEECCCCCCCcCCCC-CCcCcCCCCcc
Confidence 357777742 3455677 788877742 1 12444454444555 55544 45777777777
Q ss_pred cccccCCC
Q 030820 76 FCKDCDEP 83 (171)
Q Consensus 76 LC~~CD~~ 83 (171)
||.+|-..
T Consensus 79 fC~~c~~g 86 (107)
T 4gne_A 79 FCKDHEKG 86 (107)
T ss_dssp ECTTTCTT
T ss_pred hhhhccCC
Confidence 77777543
No 41
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=37.14 E-value=11 Score=35.76 Aligned_cols=81 Identities=22% Similarity=0.468 Sum_probs=54.0
Q ss_pred CccccccCCC--CcEEEcccccccchhhhchh--hhcCcccc-cCcccceecc---cCCCCCCCchhcccceEEEec---
Q 030820 2 KIQCDVCEKA--PATVICCADEAALCAKCDVE--VHAANKLA-SKHQRLLLQC---LSNKLPPCDICQEKAAFIFCV--- 70 (171)
Q Consensus 2 ~~~Cd~C~~~--~A~vyC~aD~A~LC~~CD~~--vH~aN~la-~rH~RvpL~~---~~~~~p~Cd~C~~~~A~v~C~--- 70 (171)
.+.|.+|+-. ..++.|..+.-.||-.=+.. -|--|-|. +||.-|-|.+ .+-....|-.|+....+....
T Consensus 11 ~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~ 90 (802)
T 2xzl_A 11 DNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSA 90 (802)
T ss_dssp -CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC-
T ss_pred hhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeec
Confidence 3579999985 68889999999999854422 23333333 5888888753 334567799999998665432
Q ss_pred -C--Cccccccc-cCC
Q 030820 71 -E--DRALFCKD-CDE 82 (171)
Q Consensus 71 -~--D~a~LC~~-CD~ 82 (171)
. -...||+. |-.
T Consensus 91 ~~~~~~~~~cr~~c~~ 106 (802)
T 2xzl_A 91 KSEAVVVLLCRIPCAQ 106 (802)
T ss_dssp -----CEEEETTTTTT
T ss_pred cCCceEEEEeCCcccc
Confidence 2 24677884 854
No 42
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.46 E-value=17 Score=32.18 Aligned_cols=71 Identities=20% Similarity=0.376 Sum_probs=43.6
Q ss_pred CCccccccCCCCcEEEcccc-cccchhhhchhhhcCcccccCcccceecccCCCCCCCchhcccceEEEec--CCccccc
Q 030820 1 MKIQCDVCEKAPATVICCAD-EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCV--EDRALFC 77 (171)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD-~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~~A~v~C~--~D~a~LC 77 (171)
|+..|-.|++.. .++..-- ...+|..|-...+..+..- .....-..|..|.+..-.+.|. .+...||
T Consensus 49 ~e~~C~~CG~~~-~~~~HPl~~v~lC~~Ck~~y~~~~f~~---------D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC 118 (386)
T 2pv0_B 49 IEDICICCGSLQ-VHTQHPLFEGGICAPCKDKFLDALFLY---------DDDGYQSYCSICCSGETLLICGNPDCTRCYC 118 (386)
T ss_dssp GGGSBTTTCCSC-CCSBCSSBSSBCCHHHHHHHHTTTTCB---------CSSSSBCSCTTTCCCSSCEECCSTTCCCEEC
T ss_pred ccceeCCCCCcC-ccccCCCcCcchhhHHHHHHhccCccc---------CCCCCcccceEcCCCCeEEEeCCCCCCcchH
Confidence 345788888752 2333322 5778888877777654321 0111233588888887777787 6777788
Q ss_pred cccC
Q 030820 78 KDCD 81 (171)
Q Consensus 78 ~~CD 81 (171)
..|-
T Consensus 119 ~~Ci 122 (386)
T 2pv0_B 119 FECV 122 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 43
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.02 E-value=14 Score=24.00 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=24.2
Q ss_pred cccccCCCCcEEEcccccccchh-hhchhhh
Q 030820 4 QCDVCEKAPATVICCADEAALCA-KCDVEVH 33 (171)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~-~CD~~vH 33 (171)
+|++|+. ++...|..+.+..|. .|= +.|
T Consensus 14 ~C~vC~~-~~kY~CPrC~~~yCSl~C~-k~H 42 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACRVPYCSVVCF-RKH 42 (56)
T ss_dssp CCTTTCS-CCSEECTTTCCEESSHHHH-HHH
T ss_pred ccCcCcC-CCeeeCCCCCCCeeCHHHH-HHH
Confidence 6999999 999999999999998 775 444
No 44
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=35.66 E-value=12 Score=35.44 Aligned_cols=80 Identities=23% Similarity=0.484 Sum_probs=53.7
Q ss_pred CccccccCCC--CcEEEcccccccchhhhchh--hhcCcccc-cCcccceecc---cCCCCCCCchhcccceEEEe----
Q 030820 2 KIQCDVCEKA--PATVICCADEAALCAKCDVE--VHAANKLA-SKHQRLLLQC---LSNKLPPCDICQEKAAFIFC---- 69 (171)
Q Consensus 2 ~~~Cd~C~~~--~A~vyC~aD~A~LC~~CD~~--vH~aN~la-~rH~RvpL~~---~~~~~p~Cd~C~~~~A~v~C---- 69 (171)
.+.|.+|+-. ..++.|..+.-.||..=... -|--|-|. +||.-|-|.+ .+-....|..|+....++..
T Consensus 6 ~~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~lg~~~~ 85 (800)
T 2wjy_A 6 IHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA 85 (800)
T ss_dssp TTSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTTCEEEC-
T ss_pred chhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceeeeeceec
Confidence 4679999985 68889999999999854422 23333333 5888888854 33357779999999865443
Q ss_pred cCC--cccccc-ccC
Q 030820 70 VED--RALFCK-DCD 81 (171)
Q Consensus 70 ~~D--~a~LC~-~CD 81 (171)
..+ ...+|+ .|.
T Consensus 86 ~~~~~~~~~~~~~~~ 100 (800)
T 2wjy_A 86 KADSVVVLLCRQPCA 100 (800)
T ss_dssp ----CCEECCTTTTS
T ss_pred ccCceEEEEecCccc
Confidence 223 457888 464
No 45
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=34.96 E-value=24 Score=22.26 Aligned_cols=48 Identities=23% Similarity=0.499 Sum_probs=29.8
Q ss_pred CccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhccc
Q 030820 2 KIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEK 63 (171)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~ 63 (171)
...|.+|+.. +.-.+|..|+...|.. -+ ..||...+.....|+.|...
T Consensus 5 ~~~C~vC~~~--------g~ll~Cd~C~~~fH~~-----Cl-~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKS--------GQLLMCDTCSRVYHLD-----CL-DPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCC--------SSCEECSSSSCEECGG-----GS-SSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCC--------CcEEEcCCCCcCEECC-----cC-CCCcCCCCCCceEChhccCh
Confidence 3578999974 3566777888777752 11 12455555556667777554
No 46
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=32.57 E-value=14 Score=23.35 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=22.7
Q ss_pred CccccccCCC-CcEEEccccccc-chhhhchh
Q 030820 2 KIQCDVCEKA-PATVICCADEAA-LCAKCDVE 31 (171)
Q Consensus 2 ~~~Cd~C~~~-~A~vyC~aD~A~-LC~~CD~~ 31 (171)
...|+.|.+. ...+.|..+..+ ||..|-..
T Consensus 6 ~~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVETRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEESSEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCcceEEcCCCCCchhHHHHHhC
Confidence 4679999975 255889888766 99999644
No 47
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=31.89 E-value=32 Score=22.68 Aligned_cols=15 Identities=33% Similarity=0.950 Sum_probs=9.7
Q ss_pred ccccchhhhchhhhc
Q 030820 20 DEAALCAKCDVEVHA 34 (171)
Q Consensus 20 D~A~LC~~CD~~vH~ 34 (171)
+...+|..|++..|.
T Consensus 31 ~~ll~CD~C~~~yH~ 45 (70)
T 3asl_A 31 DKQLMCDECDMAFHI 45 (70)
T ss_dssp GGEEECTTTCCEEEG
T ss_pred CCEEEcCCCCCceec
Confidence 345667777777664
No 48
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.84 E-value=32 Score=23.21 Aligned_cols=15 Identities=33% Similarity=0.809 Sum_probs=8.7
Q ss_pred ccccchhhhchhhhc
Q 030820 20 DEAALCAKCDVEVHA 34 (171)
Q Consensus 20 D~A~LC~~CD~~vH~ 34 (171)
+...+|..|+...|.
T Consensus 39 ~~ll~CD~C~~~yH~ 53 (77)
T 2e6s_A 39 NMQLLCDECNVAYHI 53 (77)
T ss_dssp TTEEECSSSCCEEET
T ss_pred CCEEEcCCCCccccc
Confidence 345566666666663
No 49
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.12 E-value=31 Score=24.18 Aligned_cols=47 Identities=26% Similarity=0.576 Sum_probs=27.0
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEK 63 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~ 63 (171)
..|.+|++.- .-.+|..|++..|-. -+ .-||...+.....|..|...
T Consensus 26 ~~C~vC~~~g--------~LL~CD~C~~~fH~~-----Cl-~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKPG--------DLVMCNQCEFCFHLD-----CH-LPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSSS--------CCEECTTSSCEECTT-----SS-STTCCCCCSSSCCCCSCCCC
T ss_pred CcCcCcCCCC--------CEEECCCCCCceecc-----cC-CCCCCCCcCCCcCCccccCC
Confidence 4688888643 456788898877742 11 12444444445556555443
No 50
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.80 E-value=8.6 Score=21.99 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=21.7
Q ss_pred cccchhhhchhhhcCcccccCcccceecccCCCCCCCchhc
Q 030820 21 EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQ 61 (171)
Q Consensus 21 ~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~ 61 (171)
..+-|..|+...-.. ..+.+|+|+...+. ...|++|.
T Consensus 11 k~~~C~~C~k~f~~~-~~L~~H~~~H~~~k---~~~C~~C~ 47 (48)
T 2epr_A 11 KQVACEICGKIFRDV-YHLNRHKLSHSGEK---PYSSGPSS 47 (48)
T ss_dssp CSEEETTTTEEESSH-HHHHHHGGGSCSCC---CCCSCCCC
T ss_pred cCeeCCCCCcccCCH-HHHHHHHHhcCCCC---CccCCCCC
Confidence 446677887665433 34578888764332 23476664
No 51
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=29.79 E-value=36 Score=26.49 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=30.5
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhcccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~~ 64 (171)
..|.+|+.. +.-.+|..|++..|.. .| +-+|...+.....|..|...+
T Consensus 3 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~-----Cl-~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP--------GDLVMCNQCEFCFHLD-----CH-LPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC--------SSCCCCTTTCCBCCST-----TS-TTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCC--------CceeECCCCCchhccc-----cC-CCCcccCCCCCCCCcCccCCC
Confidence 468888854 3467788999888842 22 124555555566788776653
No 52
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.45 E-value=18 Score=23.61 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=14.5
Q ss_pred EEEccccc----ccchhhhchhhh
Q 030820 14 TVICCADE----AALCAKCDVEVH 33 (171)
Q Consensus 14 ~vyC~aD~----A~LC~~CD~~vH 33 (171)
.+||..|= +..|..|+..|-
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~ 26 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIE 26 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCC
T ss_pred CCcchHHHHhHhCCcCccccCEec
Confidence 46777773 457999988776
No 53
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=29.18 E-value=30 Score=24.30 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=10.0
Q ss_pred cccchhhhchhhhc
Q 030820 21 EAALCAKCDVEVHA 34 (171)
Q Consensus 21 ~A~LC~~CD~~vH~ 34 (171)
...+|..|++..|.
T Consensus 68 ~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 68 KMLVCDTCDKGYHT 81 (111)
T ss_dssp TEEECSSSCCEEEG
T ss_pred CeeECCCCCcHHhH
Confidence 46677788877775
No 54
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=28.04 E-value=17 Score=23.96 Aligned_cols=30 Identities=30% Similarity=0.741 Sum_probs=25.2
Q ss_pred cccccCC---CCcEEEcccccccchh-hhchhhhc
Q 030820 4 QCDVCEK---APATVICCADEAALCA-KCDVEVHA 34 (171)
Q Consensus 4 ~Cd~C~~---~~A~vyC~aD~A~LC~-~CD~~vH~ 34 (171)
+|.+|.. .++...|..+.+..|. .|-+ .|.
T Consensus 13 ~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k-~Hk 46 (59)
T 1x4s_A 13 PCGFCPAGEVQPARYTCPRCNAPYCSLRCYR-THG 46 (59)
T ss_dssp EECSSCTTCCEEECEECTTTCCEESSHHHHH-HHC
T ss_pred cCcCCCCCcCCCccccCcCCCCCccChHHHH-HHh
Confidence 7999985 6899999999999998 8864 553
No 55
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=27.79 E-value=14 Score=24.99 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=25.2
Q ss_pred CCccccccCCCCcEEEcccccccchhhhchh
Q 030820 1 MKIQCDVCEKAPATVICCADEAALCAKCDVE 31 (171)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~ 31 (171)
|+..|..|+ +.-+||=.+-...+|..|...
T Consensus 6 m~VKCp~C~-niq~VFShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 6 VKVKCPDCE-HEQVIFDHPSTIVKCIICGRT 35 (66)
T ss_dssp EEEECTTTC-CEEEEESSCSSCEECSSSCCE
T ss_pred EEEECCCCC-CceEEEecCceEEEcccCCCE
Confidence 678899999 578889999999999999743
No 56
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=26.47 E-value=20 Score=25.19 Aligned_cols=29 Identities=28% Similarity=0.638 Sum_probs=24.3
Q ss_pred CCccccccCCCCcEEEcccccccchhhhch
Q 030820 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (171)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~ 30 (171)
|+..|..|+ +.-+||=.+-...+|..|..
T Consensus 33 m~VkCp~C~-~~q~VFSha~t~V~C~~Cg~ 61 (82)
T 3u5c_b 33 LDVKCPGCL-NITTVFSHAQTAVTCESCST 61 (82)
T ss_dssp EEEECTTSC-SCEEEESBCSSCCCCSSSCC
T ss_pred EEEECCCCC-CeeEEEecCCeEEEccccCC
Confidence 677899998 57888888889999999874
No 57
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=26.47 E-value=14 Score=27.25 Aligned_cols=23 Identities=26% Similarity=0.729 Sum_probs=12.8
Q ss_pred CCCCchhcccceEEEecCCccccccccC
Q 030820 54 LPPCDICQEKAAFIFCVEDRALFCKDCD 81 (171)
Q Consensus 54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD 81 (171)
..+|-+|+..+.. ..+++|..|-
T Consensus 57 ~~rCIiCg~~~g~-----~dAYYC~eC~ 79 (109)
T 2k0a_A 57 AKNCIICNLNVGV-----NDAFYCWECC 79 (109)
T ss_dssp TSBCTTTSSSBCC-----EECEECHHHH
T ss_pred CCceEEcCCCCCc-----ccceehHhhh
Confidence 4556666633321 1477777774
No 58
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=26.18 E-value=47 Score=23.53 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=18.8
Q ss_pred cccchhhhchhhhcCcccccCcccceecccCCCCCCCchhc
Q 030820 21 EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQ 61 (171)
Q Consensus 21 ~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~ 61 (171)
...+|..|+...|.. - .+.||...+.....|..|.
T Consensus 76 ~ll~Cd~C~~~yH~~-----C-l~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 76 NMLFCDSCDRGFHME-----C-CDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp CCEECTTTCCEECGG-----G-CSSCCSSCCSSCCCCTTTS
T ss_pred ceEEcCCCCCeeecc-----c-CCCCCCCCCCCCeECCCCC
Confidence 456788888777742 1 1124444444444555553
No 59
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.52 E-value=18 Score=24.25 Aligned_cols=30 Identities=17% Similarity=0.494 Sum_probs=24.2
Q ss_pred CCccccccCCCCcEEEcccccccchhhhchh
Q 030820 1 MKIQCDVCEKAPATVICCADEAALCAKCDVE 31 (171)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~ 31 (171)
|+..|..|+ +.-++|=.+-...+|..|...
T Consensus 14 m~VkCp~C~-~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 14 LRVKCIDCG-NEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EEEECSSSC-CEEEEESSCSSCEECSSSCCE
T ss_pred EEEECCCCC-CeeEEEecCCeEEEccCcCCE
Confidence 677899998 577788888888889888743
No 60
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=24.30 E-value=65 Score=24.40 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=21.5
Q ss_pred CCCCchhcccceEEEecCCccccccccCC
Q 030820 54 LPPCDICQEKAAFIFCVEDRALFCKDCDE 82 (171)
Q Consensus 54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~ 82 (171)
.-.|.+|.+-.-.+-|..+-..||..|..
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~ 91 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCIL 91 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHH
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcC
Confidence 34588888887767777777888888754
No 61
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=24.17 E-value=20 Score=25.12 Aligned_cols=29 Identities=24% Similarity=0.735 Sum_probs=24.1
Q ss_pred CCccccccCCCCcEEEcccccccchhhhch
Q 030820 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (171)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~ 30 (171)
|++.|..|+ +.-+||=.+-...+|..|..
T Consensus 31 m~VkCp~C~-n~q~VFShA~t~V~C~~Cg~ 59 (81)
T 2xzm_6 31 MDVKCAQCQ-NIQMIFSNAQSTIICEKCSA 59 (81)
T ss_dssp EEEECSSSC-CEEEEETTCSSCEECSSSCC
T ss_pred EEeECCCCC-CeeEEEecCccEEEccCCCC
Confidence 677899998 57888888888888888873
No 62
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.64 E-value=53 Score=25.54 Aligned_cols=70 Identities=16% Similarity=0.300 Sum_probs=39.5
Q ss_pred CccccccCCCCcEEEccc-ccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhcccceEEEec--CCcccccc
Q 030820 2 KIQCDVCEKAPATVICCA-DEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCV--EDRALFCK 78 (171)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~a-D~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~~A~v~C~--~D~a~LC~ 78 (171)
...|-.|++. .+++... =...||..|-...+...... ..-..-..|..|.+....+.|. .+...||.
T Consensus 36 e~~Ct~CG~~-~~~~~HPlf~v~lC~~Ck~~y~e~~f~~---------DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~ 105 (159)
T 3a1b_A 36 EDICISCGSL-NVTLEHPLFVGGMCQNCKNCFLECAYQY---------DDDGYQSYCTICCGGREVLMCGNNNCCRCFCV 105 (159)
T ss_dssp GGSBTTTCCS-CCCEECSSBSSEECHHHHHHHHHHTTCB---------CTTSSBSSCTTTSCCSEEEECSSTTTCCEEEH
T ss_pred cCcccCCCCc-CccccCCCccchhhHHHHHHHhhccccc---------CCCCCcceeeEecCCCeEEeeCCCCCCCchhH
Confidence 4566677653 2222222 24566777765555432110 1111233589998887777787 67788888
Q ss_pred ccC
Q 030820 79 DCD 81 (171)
Q Consensus 79 ~CD 81 (171)
.|-
T Consensus 106 ~CI 108 (159)
T 3a1b_A 106 ECV 108 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
No 63
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.56 E-value=21 Score=25.34 Aligned_cols=29 Identities=24% Similarity=0.650 Sum_probs=23.6
Q ss_pred CCccccccCCCCcEEEcccccccchhhhch
Q 030820 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (171)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~ 30 (171)
|+..|-.|+ +.-+||=.+-...+|..|..
T Consensus 35 m~VkCp~C~-~~~~VFShA~t~V~C~~Cgt 63 (86)
T 3iz6_X 35 MDVKCQGCF-NITTVFSHSQTVVVCPGCQT 63 (86)
T ss_dssp EEEECTTTC-CEEEEETTCSSCCCCSSSCC
T ss_pred eEEECCCCC-CeeEEEecCCcEEEccCCCC
Confidence 667888888 57788888888888888873
No 64
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=23.24 E-value=27 Score=21.08 Aligned_cols=25 Identities=28% Similarity=0.810 Sum_probs=20.4
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHA 34 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~ 34 (171)
..|+.|++ .+| .+..|..|...+|.
T Consensus 15 t~C~~C~~---~l~----qG~~C~~C~~~~H~ 39 (52)
T 1faq_A 15 AFCDICQK---FLL----NGFRCQTCGYKFHE 39 (52)
T ss_dssp EECTTSSS---EEC----SEEECTTTTCCBCS
T ss_pred cCCCCccc---ccc----cCCEeCCCCCeECh
Confidence 46899986 355 78999999999995
No 65
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.90 E-value=27 Score=19.32 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=16.8
Q ss_pred ccccchhhhchhhhcCcccccCccccee
Q 030820 20 DEAALCAKCDVEVHAANKLASKHQRLLL 47 (171)
Q Consensus 20 D~A~LC~~CD~~vH~aN~la~rH~RvpL 47 (171)
...+-|..|+...-.. ..+.+|+|+-.
T Consensus 10 ~~~~~C~~C~k~f~~~-~~L~~H~~~H~ 36 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQR-VHLTQHQRVHT 36 (46)
T ss_dssp CCSEECTTTCCEESSS-HHHHTTGGGGS
T ss_pred CCCeECCCCCcccCCH-HHHHHHHHHcC
Confidence 3456777788665543 34578887654
No 66
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.72 E-value=33 Score=21.82 Aligned_cols=53 Identities=21% Similarity=0.468 Sum_probs=29.0
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecc--c-CCCCCCCchhcccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC--L-SNKLPPCDICQEKA 64 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~--~-~~~~p~Cd~C~~~~ 64 (171)
..|.+|+..... ..+...+|..|+...|.. -|. .||.. + +.....|..|....
T Consensus 7 ~~C~vC~~~~~~---~~~~ll~Cd~C~~~~H~~-----C~~-p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 7 GVCTICQEEYSE---APNEMVICDKCGQGYHQL-----CHT-PHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCBSSSCCCCCB---TTBCEEECSSSCCEEETT-----TSS-SCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCC---CCCCEEECCCCChHHHhh-----hCC-CcccccccCCCCCEECCCCcCcc
Confidence 578889864211 124556788899888852 111 23322 1 33455677765543
No 67
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.27 E-value=87 Score=20.21 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=22.4
Q ss_pred ccccccCCCC---cEEEccccc-ccchhhhchhh
Q 030820 3 IQCDVCEKAP---ATVICCADE-AALCAKCDVEV 32 (171)
Q Consensus 3 ~~Cd~C~~~~---A~vyC~aD~-A~LC~~CD~~v 32 (171)
+.||.|+..| -.+.|..+. --||..|-..-
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 5799999765 557888774 45999997553
Done!