Query 030820
Match_columns 171
No_of_seqs 164 out of 550
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 07:38:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030820.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030820hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2djaa1 g.43.1.1 (A:8-78) Midl 95.4 0.0034 2.5E-07 40.7 2.2 41 54-100 11-52 (71)
2 d1frea_ g.43.1.1 (A:) Nuclear 93.6 0.016 1.1E-06 33.9 1.9 37 56-99 2-39 (39)
3 d2d8ua1 g.43.1.1 (A:8-58) Ubiq 93.2 0.011 7.7E-07 36.3 0.7 31 55-85 2-33 (51)
4 d2dida1 g.43.1.1 (A:8-47) Trip 92.8 0.021 1.5E-06 33.5 1.6 37 56-99 3-40 (40)
5 d2dq5a1 g.43.1.1 (A:168-214) M 92.5 0.024 1.7E-06 34.2 1.6 38 56-99 7-45 (47)
6 d2csva1 g.43.1.1 (A:8-66) Trip 89.1 0.044 3.2E-06 34.3 0.5 40 54-100 11-50 (59)
7 d2djaa1 g.43.1.1 (A:8-78) Midl 84.9 0.3 2.1E-05 30.9 2.8 42 3-50 12-54 (71)
8 d2fc7a1 g.44.1.6 (A:8-76) Zinc 70.4 3.1 0.00023 26.2 4.4 44 56-99 16-66 (69)
9 d2csva1 g.43.1.1 (A:8-66) Trip 68.1 1.1 7.9E-05 27.5 1.6 40 3-49 12-51 (59)
10 d2dida1 g.43.1.1 (A:8-47) Trip 67.8 1.6 0.00012 24.8 2.3 29 4-33 3-32 (40)
11 d2d8ua1 g.43.1.1 (A:8-58) Ubiq 65.9 1.2 8.5E-05 26.6 1.4 42 3-50 2-44 (51)
12 d1frea_ g.43.1.1 (A:) Nuclear 62.3 1.2 8.7E-05 25.3 0.9 25 5-30 3-27 (39)
13 d2dq5a1 g.43.1.1 (A:168-214) M 61.1 2.8 0.00021 24.4 2.6 39 3-47 6-45 (47)
14 d1z60a1 g.49.1.2 (A:328-386) T 53.3 2.8 0.0002 26.3 1.6 32 4-35 17-51 (59)
15 d2d8va1 g.43.1.1 (A:8-61) Zinc 42.8 11 0.00077 23.1 3.1 45 4-50 3-48 (54)
16 d1f62a_ g.50.1.2 (A:) Williams 42.6 5.7 0.00042 22.9 1.8 47 4-61 2-48 (51)
17 d2fc7a1 g.44.1.6 (A:8-76) Zinc 41.9 15 0.0011 22.8 3.9 29 2-30 14-49 (69)
18 d1x4sa1 g.85.1.2 (A:8-53) Zinc 40.8 4 0.00029 24.3 0.8 27 4-30 9-36 (46)
19 d2d8xa1 g.39.1.3 (A:33-64) Pin 37.9 3 0.00021 23.0 -0.2 27 4-30 1-28 (32)
20 d2jnea1 g.41.18.1 (A:1-71) Hyp 37.1 13 0.00091 23.9 2.9 58 1-81 1-58 (71)
21 d1qxfa_ g.41.8.4 (A:) Ribosoma 31.2 5.3 0.00039 24.8 0.2 30 1-31 6-35 (58)
22 d1v5na_ g.49.1.3 (A:) Pdi-like 30.9 16 0.0012 23.9 2.7 59 24-88 11-75 (89)
23 d1fp0a1 g.50.1.2 (A:19-88) Nuc 26.8 29 0.0021 21.0 3.3 24 3-34 8-31 (70)
24 d1mm2a_ g.50.1.2 (A:) Mi2-beta 26.2 21 0.0015 21.1 2.5 24 3-34 10-33 (61)
25 d2dipa1 g.44.1.6 (A:8-92) Zinc 25.7 25 0.0018 22.7 2.9 28 2-29 24-55 (85)
26 d1wj0a_ g.72.1.1 (A:) Squamosa 24.6 18 0.0013 22.2 1.9 42 27-81 8-49 (58)
27 d1kbea_ g.49.1.1 (A:) Kinase s 21.1 16 0.0012 21.2 1.1 26 2-34 14-39 (49)
No 1
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.38 E-value=0.0034 Score=40.67 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=32.7
Q ss_pred CCCCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceeee
Q 030820 54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLAT 100 (171)
Q Consensus 54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l~ 100 (171)
...|+.|...+..+||..|...+|..|.. ..| .+|.-.+|.
T Consensus 11 ~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~ 52 (71)
T d2djaa1 11 GITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLN 52 (71)
T ss_dssp CCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCC
T ss_pred CCcCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHH
Confidence 44699999999999999999999999964 456 457665554
No 2
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=93.59 E-value=0.016 Score=33.94 Aligned_cols=37 Identities=24% Similarity=0.519 Sum_probs=27.9
Q ss_pred CCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceee
Q 030820 56 PCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLA 99 (171)
Q Consensus 56 ~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l 99 (171)
+|+.|+ ++..+||..|...+|..|.. ..| ++|.-+||
T Consensus 2 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi 39 (39)
T d1frea_ 2 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH------ASHNFLPI 39 (39)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC------TTCCCCCC
T ss_pred CCcccC-cceeEEcccCCcEeeccCcCCCCc------CCCcEeeC
Confidence 588996 56889999999999999964 345 45655543
No 3
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.15 E-value=0.011 Score=36.33 Aligned_cols=31 Identities=26% Similarity=0.589 Sum_probs=25.9
Q ss_pred CCCchhcccceEEEecCCccccccccC-CCcc
Q 030820 55 PPCDICQEKAAFIFCVEDRALFCKDCD-EPIH 85 (171)
Q Consensus 55 p~Cd~C~~~~A~v~C~~D~a~LC~~CD-~~vH 85 (171)
|.|+.|...+..+||..|...+|..|. ...|
T Consensus 2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H 33 (51)
T d2d8ua1 2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH 33 (51)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST
T ss_pred CCCcccCcCcceEEcCCCCceECccccCcCCc
Confidence 459999999999999999999999995 3455
No 4
>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.77 E-value=0.021 Score=33.48 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=28.8
Q ss_pred CCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceee
Q 030820 56 PCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLA 99 (171)
Q Consensus 56 ~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l 99 (171)
.|+.|+ ++-.+||..|...+|..|.. ..| +.|.-+||
T Consensus 3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi 40 (40)
T d2dida1 3 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL 40 (40)
T ss_dssp BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred cchhhC-ccceEEcccCCcEeeccCcCCCCc------CCCcEecC
Confidence 489995 56899999999999999974 356 45665553
No 5
>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.45 E-value=0.024 Score=34.19 Aligned_cols=38 Identities=26% Similarity=0.507 Sum_probs=30.3
Q ss_pred CCchhcccceEEEecCCccccccccC-CCccCCCCCCCCCcceee
Q 030820 56 PCDICQEKAAFIFCVEDRALFCKDCD-EPIHSPGSLSANHQRFLA 99 (171)
Q Consensus 56 ~Cd~C~~~~A~v~C~~D~a~LC~~CD-~~vH~an~ls~~HqR~~l 99 (171)
.|+.|...+..+||..+...+|..|- ...| ++|.-.+|
T Consensus 7 ~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H------~~H~~~~l 45 (47)
T d2dq5a1 7 MCLEHEDEKVNMYCVTDDQLICALCKLVGRH------RDHQVAAL 45 (47)
T ss_dssp BCSSCTTSBEEEEETTTTEEEEHHHHHTSST------TSSCCCCS
T ss_pred cchhhCCCcceEEcCCCCccCCccCcCcCCc------CCCeEeeC
Confidence 49999999999999999999999995 3466 34655444
No 6
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.06 E-value=0.044 Score=34.32 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=32.0
Q ss_pred CCCCchhcccceEEEecCCccccccccCCCccCCCCCCCCCcceeee
Q 030820 54 LPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLAT 100 (171)
Q Consensus 54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR~~l~ 100 (171)
...|..|+ .+..+||..|...+|..|....| .+|.-+++.
T Consensus 11 ~~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H------~~H~~~~l~ 50 (59)
T d2csva1 11 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVE 50 (59)
T ss_dssp CCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHH
T ss_pred hCchhhhC-CccceECCCCCceECcccCcccC------CCCCeeCHH
Confidence 34699996 57899999999999999976666 457766664
No 7
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.88 E-value=0.3 Score=30.87 Aligned_cols=42 Identities=29% Similarity=0.514 Sum_probs=32.1
Q ss_pred ccccccCCCCcEEEcccccccchhhhchh-hhcCcccccCcccceeccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVE-VHAANKLASKHQRLLLQCL 50 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~-vH~aN~la~rH~RvpL~~~ 50 (171)
..|..-...+..+||..|...+|..|-.. .| +.|.-.+|.++
T Consensus 12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~~a 54 (71)
T d2djaa1 12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDR 54 (71)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSS
T ss_pred CcCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHHHH
Confidence 45777666678999999999999999643 56 45877777654
No 8
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.37 E-value=3.1 Score=26.24 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=28.2
Q ss_pred CCchhcccc---eEEEecCC----ccccccccCCCccCCCCCCCCCcceee
Q 030820 56 PCDICQEKA---AFIFCVED----RALFCKDCDEPIHSPGSLSANHQRFLA 99 (171)
Q Consensus 56 ~Cd~C~~~~---A~v~C~~D----~a~LC~~CD~~vH~an~ls~~HqR~~l 99 (171)
.|+.|+..+ ..+.|..+ .--||..|-........-...|...+|
T Consensus 16 ~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I 66 (69)
T d2fc7a1 16 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPI 66 (69)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEE
T ss_pred EcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEe
Confidence 499999886 45668766 456999996554432223345665554
No 9
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.11 E-value=1.1 Score=27.47 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=30.6
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC 49 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~ 49 (171)
..|..=+ .+-.+||..|...+|..|-..-| +.|.-++|.+
T Consensus 12 ~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H------~~H~~~~l~~ 51 (59)
T d2csva1 12 RKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEE 51 (59)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHH
T ss_pred CchhhhC-CccceECCCCCceECcccCcccC------CCCCeeCHHH
Confidence 3566664 46789999999999999976666 4577777754
No 10
>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.78 E-value=1.6 Score=24.81 Aligned_cols=29 Identities=24% Similarity=0.698 Sum_probs=21.9
Q ss_pred cccccCCCCcEEEcccccccchhhhch-hhh
Q 030820 4 QCDVCEKAPATVICCADEAALCAKCDV-EVH 33 (171)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH 33 (171)
+|..=+ .+=.+||..|...+|..|.. .-|
T Consensus 3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 32 (40)
T d2dida1 3 LCPQHH-EALSLFCYEDQEAVCLICAISHTH 32 (40)
T ss_dssp BCTTTC-CBCCEEESSSCSEECHHHHTSSTT
T ss_pred cchhhC-ccceEEcccCCcEeeccCcCCCCc
Confidence 455553 56778999999999999964 355
No 11
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.90 E-value=1.2 Score=26.55 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=30.7
Q ss_pred ccccccCCCCcEEEcccccccchhhhch-hhhcCcccccCcccceeccc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~ 50 (171)
++|..=...+-.+||..|...+|..|-. ..| +.|.-.+|..+
T Consensus 2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H------k~H~v~~l~~a 44 (51)
T d2d8ua1 2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSV 44 (51)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTTC
T ss_pred CCCcccCcCcceEEcCCCCceECccccCcCCc------CcCcCcCHHHH
Confidence 3566665567889999999999999954 356 35776676544
No 12
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=62.30 E-value=1.2 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=19.4
Q ss_pred ccccCCCCcEEEcccccccchhhhch
Q 030820 5 CDVCEKAPATVICCADEAALCAKCDV 30 (171)
Q Consensus 5 Cd~C~~~~A~vyC~aD~A~LC~~CD~ 30 (171)
|..=+ .+-.+||..|...+|..|-.
T Consensus 3 C~~H~-e~l~lfC~~d~~~iC~~C~~ 27 (39)
T d1frea_ 3 CSEHD-ERLKLYCKDDGTLSCVICRD 27 (39)
T ss_dssp CCSSC-SSCCCCCCSSSSSSCCTTSS
T ss_pred CcccC-cceeEEcccCCcEeeccCcC
Confidence 44443 46778999999999999953
No 13
>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.06 E-value=2.8 Score=24.37 Aligned_cols=39 Identities=28% Similarity=0.594 Sum_probs=27.4
Q ss_pred ccccccCCCCcEEEcccccccchhhhch-hhhcCcccccCccccee
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLL 47 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL 47 (171)
..|..=...+-.+||..|....|..|-. ..| +.|.-.+|
T Consensus 6 ~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H------~~H~~~~l 45 (47)
T d2dq5a1 6 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRH------RDHQVAAL 45 (47)
T ss_dssp CBCSSCTTSBEEEEETTTTEEEEHHHHHTSST------TSSCCCCS
T ss_pred ccchhhCCCcceEEcCCCCccCCccCcCcCCc------CCCeEeeC
Confidence 3455555566789999999999999953 356 34665555
No 14
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.30 E-value=2.8 Score=26.31 Aligned_cols=32 Identities=28% Similarity=0.688 Sum_probs=24.6
Q ss_pred cccccCC---CCcEEEcccccccchhhhchhhhcC
Q 030820 4 QCDVCEK---APATVICCADEAALCAKCDVEVHAA 35 (171)
Q Consensus 4 ~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~a 35 (171)
.|-.|++ ....+.|..+.-.+|.+||.-||..
T Consensus 17 ~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T d1z60a1 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred CccCCCCcCCCCceEECcCCCCccccccchhhhhh
Confidence 3666764 2344569999999999999999963
No 15
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.78 E-value=11 Score=23.09 Aligned_cols=45 Identities=29% Similarity=0.441 Sum_probs=35.8
Q ss_pred cccccCCCCcEEEccccc-ccchhhhchhhhcCcccccCcccceeccc
Q 030820 4 QCDVCEKAPATVICCADE-AALCAKCDVEVHAANKLASKHQRLLLQCL 50 (171)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~-A~LC~~CD~~vH~aN~la~rH~RvpL~~~ 50 (171)
=|-+|. ..|++.|..+. -.+|..|=+..|. +.-.+.|+-++..+.
T Consensus 3 WC~ICn-eDA~lrC~gCdgdLyC~rC~rE~Hd-d~e~~~H~~~~y~~~ 48 (54)
T d2d8va1 3 WCCICN-EDATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPR 48 (54)
T ss_dssp SCTTTC-SCCCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCS
T ss_pred EeEEec-CCCceEecCCCCceehHHHHHHhcc-ccccccceecccCCC
Confidence 477888 58999999764 5789999999994 556789998887543
No 16
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.64 E-value=5.7 Score=22.85 Aligned_cols=47 Identities=30% Similarity=0.548 Sum_probs=27.7
Q ss_pred cccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhc
Q 030820 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQ 61 (171)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~ 61 (171)
.|.+|++.. ..+.-.+|..|+...|.. . .+.|+...+.....|+.|.
T Consensus 2 ~C~vC~~~~-----~~~~~i~Cd~C~~~~H~~-----C-~~p~~~~~p~~~W~C~~C~ 48 (51)
T d1f62a_ 2 RCKVCRKKG-----EDDKLILCDECNKAFHLF-----C-LRPALYEVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHH-----H-HCTTCCSCCSSCCSCTTTS
T ss_pred CCcCcCCCC-----CCCCEEEcCCCCCCCCCC-----C-CCCCCCcCCCCCEECcCCc
Confidence 577887543 245677899999888851 1 1234444444445566554
No 17
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.89 E-value=15 Score=22.83 Aligned_cols=29 Identities=24% Similarity=0.614 Sum_probs=22.8
Q ss_pred CccccccCCCC---cEEEcccc----cccchhhhch
Q 030820 2 KIQCDVCEKAP---ATVICCAD----EAALCAKCDV 30 (171)
Q Consensus 2 ~~~Cd~C~~~~---A~vyC~aD----~A~LC~~CD~ 30 (171)
.+.||.|+..+ -.+.|..+ .--||..|=.
T Consensus 14 ~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~ 49 (69)
T d2fc7a1 14 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSD 49 (69)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTT
T ss_pred CeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhc
Confidence 46899999876 56788876 5789999943
No 18
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.79 E-value=4 Score=24.26 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=24.2
Q ss_pred cccccCCCCcEEEcccccccchh-hhch
Q 030820 4 QCDVCEKAPATVICCADEAALCA-KCDV 30 (171)
Q Consensus 4 ~Cd~C~~~~A~vyC~aD~A~LC~-~CD~ 30 (171)
+|.+|..+++...|..+.+..|. .|=+
T Consensus 9 lC~vC~~~~~KY~CP~C~~~yCSL~CyK 36 (46)
T d1x4sa1 9 FCPAGEVQPARYTCPRCNAPYCSLRCYR 36 (46)
T ss_dssp SSCTTCCEEECEECTTTCCEESSHHHHH
T ss_pred cChhhhCccccccCCCCCCceechHHHh
Confidence 69999999999999999999997 7764
No 19
>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.87 E-value=3 Score=23.01 Aligned_cols=27 Identities=26% Similarity=0.699 Sum_probs=21.9
Q ss_pred cccccCCCCcEE-Ecccccccchhhhch
Q 030820 4 QCDVCEKAPATV-ICCADEAALCAKCDV 30 (171)
Q Consensus 4 ~Cd~C~~~~A~v-yC~aD~A~LC~~CD~ 30 (171)
.|++|+..-|-+ |-++-.-.||..|..
T Consensus 1 rC~~C~~~LAD~GFvKnagR~LCrpch~ 28 (32)
T d2d8xa1 1 RCDLCQEVLADIGFVKNAGRHLCRPCHN 28 (32)
T ss_dssp BCSSSCCBCSSSCCEEETTEEECHHHHH
T ss_pred CchHHHhHHHHhhhhhcccccccchhhh
Confidence 489999888777 778888889988853
No 20
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=37.11 E-value=13 Score=23.93 Aligned_cols=58 Identities=17% Similarity=0.441 Sum_probs=33.3
Q ss_pred CCccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceecccCCCCCCCchhcccceEEEecCCcccccccc
Q 030820 1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDC 80 (171)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~~A~v~C~~D~a~LC~~C 80 (171)
|...|-.|+..-. + .+..+.|..|+...- ++. .|+.|....-.+-.=.-.-+||..|
T Consensus 1 m~~~CP~C~~eL~--~--~~~~~~C~~C~~~~~----------~~a---------~CPdC~~~Le~LkACGAvdYFC~~c 57 (71)
T d2jnea1 1 MELHCPQCQHVLD--Q--DNGHARCRSCGEFIE----------MKA---------LCPDCHQPLQVLKACGAVDYFCQHG 57 (71)
T ss_dssp CCCBCSSSCSBEE--E--ETTEEEETTTCCEEE----------EEE---------ECTTTCSBCEEEEETTEEEEEETTT
T ss_pred CCCcCCCccCccc--c--cCCCEehhhhhhhhe----------eEE---------eCCccccHHHHHHhccchhhhhccC
Confidence 8888999986422 2 335777777763322 122 2777777654443323345677666
Q ss_pred C
Q 030820 81 D 81 (171)
Q Consensus 81 D 81 (171)
.
T Consensus 58 n 58 (71)
T d2jnea1 58 H 58 (71)
T ss_dssp T
T ss_pred C
Confidence 4
No 21
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=31.17 E-value=5.3 Score=24.81 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=24.9
Q ss_pred CCccccccCCCCcEEEcccccccchhhhchh
Q 030820 1 MKIQCDVCEKAPATVICCADEAALCAKCDVE 31 (171)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~ 31 (171)
|+..|..|+ +..++|=.+-...+|..|...
T Consensus 6 ~~VkC~~C~-n~~ivFsha~t~V~C~~Cg~~ 35 (58)
T d1qxfa_ 6 VKVKCPDCE-HEQVIFDHPSTIVKCIICGRT 35 (58)
T ss_dssp EEEECTTTC-CEEEEESSCSSCEECSSSCCE
T ss_pred EEeECCCCC-CeEEEEecCceEEEccccCCE
Confidence 677899998 578888888899999999744
No 22
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.93 E-value=16 Score=23.86 Aligned_cols=59 Identities=19% Similarity=0.384 Sum_probs=34.2
Q ss_pred chhhhchhhhcC--c---cc-ccCcccceecccCCCCCCCchhcccceEEEecCCccccccccCCCccCCC
Q 030820 24 LCAKCDVEVHAA--N---KL-ASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPG 88 (171)
Q Consensus 24 LC~~CD~~vH~a--N---~l-a~rH~RvpL~~~~~~~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~~vH~an 88 (171)
-|..|+...|.- + ++ ---|...+|.-.......|+.|.... ....+.|..|+..+|..+
T Consensus 11 ~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~~~~~~C~~C~~~~------~g~~Y~C~~C~f~LH~~C 75 (89)
T d1v5na_ 11 RLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEG------TIWSYHCDECDFDLHAKC 75 (89)
T ss_dssp CCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCC------CSCEEECTTTCCCCCHHH
T ss_pred HHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEecCCCCEeCCCCCCc------CCcEeEeccCCCEecHHH
Confidence 455666665541 1 11 12344445543334455799998764 235688888988888554
No 23
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.82 E-value=29 Score=21.03 Aligned_cols=24 Identities=29% Similarity=0.840 Sum_probs=16.1
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHA 34 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~ 34 (171)
.+|.+|+... ...+|..|+...|.
T Consensus 8 ~~C~~C~~~~--------~ll~Cd~C~~~~H~ 31 (70)
T d1fp0a1 8 TICRVCQKPG--------DLVMCNQCEFCFHL 31 (70)
T ss_dssp SCCSSSCSSS--------CCEECTTSSCEECT
T ss_pred CCCCCCCCcC--------EEEECCCCChhhcc
Confidence 4677777543 45667778888884
No 24
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.23 E-value=21 Score=21.10 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=14.7
Q ss_pred ccccccCCCCcEEEcccccccchhhhchhhhc
Q 030820 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHA 34 (171)
Q Consensus 3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~ 34 (171)
..|.+|+... ...+|..|+.-.|.
T Consensus 10 ~~C~~C~~~g--------~lv~Cd~C~~~~H~ 33 (61)
T d1mm2a_ 10 EFCRVCKDGG--------ELLCCDTCPSSYHI 33 (61)
T ss_dssp SSCTTTCCCS--------SCBCCSSSCCCBCS
T ss_pred CCCcCCCCCC--------eEEEeCCCCccCch
Confidence 3577777543 45566667766663
No 25
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.71 E-value=25 Score=22.74 Aligned_cols=28 Identities=32% Similarity=0.732 Sum_probs=21.8
Q ss_pred CccccccCCCC---cEEEcccc-cccchhhhc
Q 030820 2 KIQCDVCEKAP---ATVICCAD-EAALCAKCD 29 (171)
Q Consensus 2 ~~~Cd~C~~~~---A~vyC~aD-~A~LC~~CD 29 (171)
.+.|+.|+..+ -.+.|..+ +--||..|=
T Consensus 24 ~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~ 55 (85)
T d2dipa1 24 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECF 55 (85)
T ss_dssp CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHH
T ss_pred CeECCCCCCCCcCcceEEcCCCCCccchHHHH
Confidence 46799998754 56789886 567999993
No 26
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.62 E-value=18 Score=22.19 Aligned_cols=42 Identities=19% Similarity=0.527 Sum_probs=26.7
Q ss_pred hhchhhhcCcccccCcccceecccCCCCCCCchhcccceEEEecCCccccccccC
Q 030820 27 KCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCD 81 (171)
Q Consensus 27 ~CD~~vH~aN~la~rH~RvpL~~~~~~~p~Cd~C~~~~A~v~C~~D~a~LC~~CD 81 (171)
.|++..-.+- .-|.|..+ |+.|..++..++ ..-..-||+.|.
T Consensus 8 gC~~dl~~~k---~YhrRhkv---------Ce~H~ka~~V~v-~G~~~RFCQQCs 49 (58)
T d1wj0a_ 8 NCGADLSKVK---DYHRRHKV---------CEIHSKATTALV-GGIMQRFCQQCS 49 (58)
T ss_dssp TCCCEETSCC---SSTTTTTC---------CHHHHTCSCEEE-TTEEECCCSSSC
T ss_pred CcchhhhhhH---HhcchhhH---------HHHhcCCCeEEE-CCcccccccccC
Confidence 4655444332 24566555 999999886665 333467898886
No 27
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.07 E-value=16 Score=21.21 Aligned_cols=26 Identities=31% Similarity=0.758 Sum_probs=20.3
Q ss_pred CccccccCCCCcEEEcccccccchhhhchhhhc
Q 030820 2 KIQCDVCEKAPATVICCADEAALCAKCDVEVHA 34 (171)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~ 34 (171)
.+.|+.|++-- | .+..|..|...+|.
T Consensus 14 ~~tC~~C~~~l---~----qg~~C~~C~~~~Hk 39 (49)
T d1kbea_ 14 SQVCNVCQKSM---I----FGVKCKHCRLKCHN 39 (49)
T ss_dssp SCCCSSSCCSS---C----CEEEETTTTEEESS
T ss_pred CCCchhhchhh---h----CcCCcCCCCChHhH
Confidence 44599999755 2 57889999999995
Done!