BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030821
(171 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356527206|ref|XP_003532203.1| PREDICTED: uncharacterized protein LOC100783048 [Glycine max]
Length = 154
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 92/142 (64%), Gaps = 11/142 (7%)
Query: 1 MLSLQSLSFLHNKPILSLERLN-------HYVNNPSPSV--VARAVENNNSQNSKFEIDP 51
S+Q L F + P L + +N + NPS S + AV+ + SQ+ ++E+DP
Sbjct: 13 FFSMQLLCFYKHPPPLFVHNINEGIFKYKRFFTNPSSSSRGIVHAVKED-SQSQQYEVDP 71
Query: 52 EEARQALQRLDQQLKSLSNK-QISSPKIKAADVKITRGPGPAEQETLEISGSFLTNTTVA 110
++AR+AL++LD+Q++SLSNK Q+S+PK++ +D+K+ E LEIS SFLT
Sbjct: 72 DKAREALKKLDEQIQSLSNKKQVSTPKLRVSDMKLPTEQASRNDEKLEISDSFLTTLAAG 131
Query: 111 LLIFTILYNVLFYTVIKPSIDG 132
L++FT+ YNVLFY VIKP+IDG
Sbjct: 132 LVLFTVFYNVLFYAVIKPAIDG 153
>gi|388516049|gb|AFK46086.1| unknown [Medicago truncatula]
Length = 149
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 88/131 (67%), Gaps = 6/131 (4%)
Query: 6 SLSFLHN--KPILSLERLNHYVNNPSPSVVARAVENNNSQNSKFEIDPEEARQALQRLDQ 63
S LHN + I RL Y ++ + + A++ ++ Q +EIDPE+AR+AL+ LDQ
Sbjct: 22 SKQLLHNDDRGIFKERRLIKYSSSFNSCCIVHALKEDSKQ---YEIDPEKAREALKELDQ 78
Query: 64 QLKSLSNKQISSPKIKAADVKITRGPGPAEQE-TLEISGSFLTNTTVALLIFTILYNVLF 122
+++SLSN+++SSPK+K +++K TR +E LEIS SFL L++FTILYNVLF
Sbjct: 79 KIQSLSNREVSSPKLKVSEMKPTREEVISENNGKLEISESFLALLAGGLVLFTILYNVLF 138
Query: 123 YTVIKPSIDGP 133
TVIKP+IDGP
Sbjct: 139 LTVIKPAIDGP 149
>gi|357460365|ref|XP_003600464.1| hypothetical protein MTR_3g061480 [Medicago truncatula]
gi|355489512|gb|AES70715.1| hypothetical protein MTR_3g061480 [Medicago truncatula]
Length = 145
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 88/131 (67%), Gaps = 6/131 (4%)
Query: 6 SLSFLHN--KPILSLERLNHYVNNPSPSVVARAVENNNSQNSKFEIDPEEARQALQRLDQ 63
S LHN + I RL Y ++ + + A++ ++ Q +EIDPE+AR+AL+ LDQ
Sbjct: 18 SKQLLHNDDRGIFKERRLIKYSSSFNSCCIVHALKEDSKQ---YEIDPEKAREALKELDQ 74
Query: 64 QLKSLSNKQISSPKIKAADVKITRGPGPAEQE-TLEISGSFLTNTTVALLIFTILYNVLF 122
+++SLSN+++SSPK+K +++K TR +E LEIS SFL L++FTILYNVLF
Sbjct: 75 KIQSLSNREVSSPKLKVSEMKPTREEVISENNGKLEISESFLALLAGGLVLFTILYNVLF 134
Query: 123 YTVIKPSIDGP 133
TVIKP+IDGP
Sbjct: 135 LTVIKPAIDGP 145
>gi|449451201|ref|XP_004143350.1| PREDICTED: uncharacterized protein LOC101220685 [Cucumis sativus]
gi|449482602|ref|XP_004156343.1| PREDICTED: uncharacterized protein LOC101227639 [Cucumis sativus]
Length = 207
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 86/147 (58%), Gaps = 21/147 (14%)
Query: 1 MLSLQSLS-------FLHNKP----ILSLERLN--HYVNNPSPSVVARAVENNNSQNSKF 47
MLSLQSL F+ K +L + + + HY + + A+ S + +F
Sbjct: 33 MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAK-----ESDSQQF 87
Query: 48 EIDPEEARQALQRLDQQLKSLSNKQISSPKIKAA-DVKITRGPGPAEQETLEISGSFLTN 106
E+DP++ARQALQ LDQQL+S S KQ+SSPK K D+ + R E EIS + L N
Sbjct: 88 EVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPR--SQMRGEMTEISETLLAN 145
Query: 107 TTVALLIFTILYNVLFYTVIKPSIDGP 133
+ V L IF+I YNVLFYTVIKPSID P
Sbjct: 146 SAVVLFIFSIFYNVLFYTVIKPSIDVP 172
>gi|388505690|gb|AFK40911.1| unknown [Lotus japonicus]
Length = 159
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 79/115 (68%), Gaps = 8/115 (6%)
Query: 27 NPSPSVVARAVENNNSQNS-KFEIDPEEARQALQRLDQQLKSLSNKQISSPKI--KAADV 83
NPS S + + + ++S ++EIDP++AR++L+ LDQQ++SLSN+Q+SSPK+ K +DV
Sbjct: 43 NPSSSFSSCCIVHAAKEDSEQYEIDPDKARESLKELDQQIQSLSNEQVSSPKVRVKVSDV 102
Query: 84 KITRG-----PGPAEQETLEISGSFLTNTTVALLIFTILYNVLFYTVIKPSIDGP 133
K+ + + ++IS SFL + LL F+I YNVLFYTVIKPSIDGP
Sbjct: 103 KLAEDQVSGSGSGSGTDKIDISDSFLASLAGGLLFFSIFYNVLFYTVIKPSIDGP 157
>gi|255544872|ref|XP_002513497.1| conserved hypothetical protein [Ricinus communis]
gi|223547405|gb|EEF48900.1| conserved hypothetical protein [Ricinus communis]
Length = 178
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 70/101 (69%), Gaps = 5/101 (4%)
Query: 32 VVARAVENNNSQNSKFEIDPEEARQALQRLDQQLKSLSNKQISSPKIKAADVKITRGPGP 91
V RA+E ++ Q +EID E+AR+ALQ+LDQQL+ LS KQ++ PK+K +DVKITR
Sbjct: 49 CVVRALEKDSQQ---YEIDQEKAREALQKLDQQLQDLSKKQVTPPKVKVSDVKITR--DQ 103
Query: 92 AEQETLEISGSFLTNTTVALLIFTILYNVLFYTVIKPSIDG 132
+E E+SGSFL L +FTILYN+L+ TVI PS D
Sbjct: 104 TIEEVPEMSGSFLAFFAAGLFLFTILYNLLYITVIDPSGDA 144
>gi|18379315|ref|NP_565278.1| uncharacterized protein [Arabidopsis thaliana]
gi|20198054|gb|AAD21779.2| expressed protein [Arabidopsis thaliana]
gi|51968650|dbj|BAD43017.1| unknown protein [Arabidopsis thaliana]
gi|107738048|gb|ABF83621.1| At2g01870 [Arabidopsis thaliana]
gi|330250416|gb|AEC05510.1| uncharacterized protein [Arabidopsis thaliana]
Length = 157
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 16/140 (11%)
Query: 1 MLSLQSLSFLHNKPILSLERLNHYVNNPSPSVVARAVENNNSQNSKFEIDPEEARQALQR 60
+L LQSL + + I+ ++ H + + +A E +S F+ID ++AR+AL++
Sbjct: 4 VLGLQSLKWYTHGRIMETKKKRHLMR------IVQATEREDS----FQIDRDKAREALKQ 53
Query: 61 LDQQLKSLSNKQISSPKI---KAADVKITRGPGPAEQETLEISGSFLTNTTVALLIFTIL 117
LDQQ++S ++++ P+I ++DV T +E EISGSFLT++ LL T+
Sbjct: 54 LDQQIESQADEK---PRIINKTSSDVVRTNNDPIMFEEPPEISGSFLTSSAFVLLALTLF 110
Query: 118 YNVLFYTVIKPSIDGPDDIP 137
YN+LF TVIKPS+DGP+ +P
Sbjct: 111 YNILFITVIKPSMDGPESVP 130
>gi|21617897|gb|AAM66947.1| unknown [Arabidopsis thaliana]
Length = 139
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 72/108 (66%), Gaps = 10/108 (9%)
Query: 33 VARAVENNNSQNSKFEIDPEEARQALQRLDQQLKSLSNKQISSPKI---KAADVKITRGP 89
+ +A E +S F+ID ++AR+AL++LDQQ++S ++++ P+I ++DV T
Sbjct: 12 IVQATEREDS----FQIDRDKAREALKQLDQQIESQADEK---PRIINKTSSDVVRTNND 64
Query: 90 GPAEQETLEISGSFLTNTTVALLIFTILYNVLFYTVIKPSIDGPDDIP 137
+E EISGSFLT++ LL T+ YN+LF TVIKPS+DGP+ +P
Sbjct: 65 PIMFEEPPEISGSFLTSSAFVLLALTLFYNILFITVIKPSMDGPESVP 112
>gi|359478733|ref|XP_003632163.1| PREDICTED: uncharacterized protein LOC100854250 [Vitis vinifera]
gi|297746306|emb|CBI16362.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 71/98 (72%), Gaps = 5/98 (5%)
Query: 35 RAVENNNSQNSKFEIDPEEARQALQRLDQQLKSLSNKQISSPKIKAADVKITRGPGPAEQ 94
AV+ ++ Q FE+DP++AR+ALQ+LDQQL+SLS KQ + P+ A++ + +
Sbjct: 52 HAVDKDSQQ---FEVDPDKAREALQKLDQQLQSLSQKQDTPPRKTASNQNLAGDQ--MRE 106
Query: 95 ETLEISGSFLTNTTVALLIFTILYNVLFYTVIKPSIDG 132
E +E+SGSFL + +AL++FTI YNVLF TVI+PSIDG
Sbjct: 107 EPVELSGSFLAYSALALVVFTIFYNVLFLTVIQPSIDG 144
>gi|147784772|emb|CAN70700.1| hypothetical protein VITISV_008768 [Vitis vinifera]
Length = 138
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 69/98 (70%), Gaps = 12/98 (12%)
Query: 35 RAVENNNSQNSKFEIDPEEARQALQRLDQQLKSLSNKQISSPKIKAADVKITRGPGPAEQ 94
AV+ ++ Q FE+DP++AR+ALQ+LDQQL+SLS KQ S+ + ++ +
Sbjct: 52 HAVDKDSQQ---FEVDPDKAREALQKLDQQLQSLSQKQASNQNLAGDQMR---------E 99
Query: 95 ETLEISGSFLTNTTVALLIFTILYNVLFYTVIKPSIDG 132
E +E+SGSFL + +AL++FTI YNVLF TVI+PSIDG
Sbjct: 100 EPVELSGSFLAYSALALVVFTIFYNVLFLTVIQPSIDG 137
>gi|224059556|ref|XP_002299905.1| predicted protein [Populus trichocarpa]
gi|118486259|gb|ABK94971.1| unknown [Populus trichocarpa]
gi|222847163|gb|EEE84710.1| predicted protein [Populus trichocarpa]
Length = 118
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 78 IKAADVKITRGPGPAEQETLEISGSFLTNTTVALLIFTILYNVLFYTVIKPSIDGPDDIP 137
I A+DVK+TR +E E+SGS L T AL +FTI YN+ F TV++PS+DGP +P
Sbjct: 19 ISASDVKLTRDE--MTEEVPEVSGSVLVYTAAALFLFTIFYNIFFLTVLQPSVDGP--LP 74
Query: 138 ASAPDTTMATN------KSPEAALVKEL 159
P+T A K P+ A+++ L
Sbjct: 75 KPEPETIQAITATTMERKPPKEAILQLL 102
>gi|357122427|ref|XP_003562917.1| PREDICTED: uncharacterized protein LOC100842526 [Brachypodium
distachyon]
Length = 165
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 3 SLQSLSFLHNKPILSLERLNHYVNNPSPSVVARAVENNNSQNSKFEIDP-EEARQALQRL 61
++ SFL + P R NH N + N++S E P EEA + L L
Sbjct: 12 AMAGRSFLADLPRPVRGRRNHLCYNGN---------NSSSSEKDGERGPTEEALRRLAEL 62
Query: 62 DQQLKSLSNKQISSPKIKAA-------DVKITRGPGPAEQETLEISGSFLTNTTVALLIF 114
D QL+ L ++ P D+ ITRG P+E E E++ +++ +T+AL IF
Sbjct: 63 DAQLEGLKEPKMRPPPPPPPPDPFMDRDMIITRG-RPSE-ELPEMTPAYVAFSTLALFIF 120
Query: 115 TILYNVLFYTVIKPSIDGPD 134
TI NV+F +KPS+DG D
Sbjct: 121 TIFTNVMFNLYVKPSVDGVD 140
>gi|326495292|dbj|BAJ85742.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 171
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 52 EEARQALQRLDQQLKSLSNKQISSPKIKAA-------DVKITRGPGPAEQETLEISGSFL 104
EEA + L LD QL+ L ++ P D+ I RG P++ E E++ +++
Sbjct: 56 EEALRRLAELDAQLEGLKEPKMRPPAPPPPPDPFLDRDMIIQRG-RPSD-ELPEMTPAYV 113
Query: 105 TNTTVALLIFTILYNVLFYTVIKPSIDGPD 134
T +T+A+ IFTI NV+F IKPS+DG D
Sbjct: 114 TFSTLAIFIFTIFTNVVFNLYIKPSVDGAD 143
>gi|242050610|ref|XP_002463049.1| hypothetical protein SORBIDRAFT_02g036760 [Sorghum bicolor]
gi|241926426|gb|EER99570.1| hypothetical protein SORBIDRAFT_02g036760 [Sorghum bicolor]
Length = 165
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 51 PEEARQALQRLDQQLKSLSNKQISSPKIKAA-----DVKITRGPGPAEQETLEISGSFLT 105
PEE R+ L+ LD L+ L ++ P D + G G + E EIS ++L
Sbjct: 59 PEETRKRLEELDALLEGLVEPKMRPPTPPPPPDPYLDRAMITGRG-STDELPEISPTYLA 117
Query: 106 NTTVALLIFTILYNVLFYTVIKPSIDGPD 134
+T+ L+I TI NV+F +KPS+DG D
Sbjct: 118 FSTLGLVILTIFTNVMFNLYVKPSVDGFD 146
>gi|226507649|ref|NP_001145073.1| uncharacterized protein LOC100278273 [Zea mays]
gi|195650681|gb|ACG44808.1| hypothetical protein [Zea mays]
Length = 166
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 51 PEEARQALQRLDQQLKSLSNKQISSPKIKAAD------VKITRGPGPAEQETLEISGSFL 104
PEE R+ L+ LD L+ L ++ P + G G + E E S +++
Sbjct: 57 PEETRKRLEELDALLEGLVEPKMRPPTPPPPPDPYLDRATMITGRGSSADELPEFSPTYV 116
Query: 105 TNTTVALLIFTILYNVLFYTVIKPSIDGPDDIP 137
+T+ L+I TI NV+F IKPS+DG D P
Sbjct: 117 AFSTLGLVILTIFTNVMFNLYIKPSVDGVDPPP 149
>gi|414590579|tpg|DAA41150.1| TPA: hypothetical protein ZEAMMB73_595609 [Zea mays]
Length = 166
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 51 PEEARQALQRLDQQLKSLSNKQISSPKIKAA------DVKITRGPGPAEQETLEISGSFL 104
PEE R+ L+ LD L+ L ++ P + G G + E E S +++
Sbjct: 57 PEETRKRLEELDALLEGLVEPKMRPPTPPPPPDPYLDRATMITGRGSSADELPEFSPTYV 116
Query: 105 TNTTVALLIFTILYNVLFYTVIKPSIDGPD 134
+T+ L+I TI NV+F IKPS+DG D
Sbjct: 117 AFSTLGLVILTIFTNVMFNLYIKPSVDGVD 146
>gi|125600775|gb|EAZ40351.1| hypothetical protein OsJ_24798 [Oryza sativa Japonica Group]
gi|218199862|gb|EEC82289.1| hypothetical protein OsI_26534 [Oryza sativa Indica Group]
Length = 206
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 56 QALQRLDQQLKSLSNKQISSPKIKAA-----DVKITRGPGPAEQETLEISGSFLTNTTVA 110
+ L LD QL+ LS + P D + G G ++ E E S +++T +T+A
Sbjct: 66 RRLAELDSQLEGLSEPRERPPAPPLPPDPYMDRDMITGRG-SKDELPEFSPTYVTFSTLA 124
Query: 111 LLIFTILYNVLFYTVIKPSIDGPD------DIPASAPDTTMATNKSPEAAL 155
L+I TI NV+F IKPS+DG D ++P A + N E A+
Sbjct: 125 LVILTIFTNVVFNLYIKPSVDGVDQPDRNSEVPLYAVNILGVINAELECAV 175
>gi|115472871|ref|NP_001060034.1| Os07g0568900 [Oryza sativa Japonica Group]
gi|33146768|dbj|BAC79686.1| unknown protein [Oryza sativa Japonica Group]
gi|113611570|dbj|BAF21948.1| Os07g0568900 [Oryza sativa Japonica Group]
gi|215692982|dbj|BAG88402.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 167
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 56 QALQRLDQQLKSLSNKQISSPKIKAA-----DVKITRGPGPAEQETLEISGSFLTNTTVA 110
+ L LD QL+ LS + P D + G G ++ E E S +++T +T+A
Sbjct: 66 RRLAELDSQLEGLSEPRERPPAPPLPPDPYMDRDMITGRG-SKDELPEFSPTYVTFSTLA 124
Query: 111 LLIFTILYNVLFYTVIKPSIDGPD 134
L+I TI NV+F IKPS+DG D
Sbjct: 125 LVILTIFTNVVFNLYIKPSVDGVD 148
>gi|242096104|ref|XP_002438542.1| hypothetical protein SORBIDRAFT_10g021690 [Sorghum bicolor]
gi|241916765|gb|EER89909.1| hypothetical protein SORBIDRAFT_10g021690 [Sorghum bicolor]
Length = 526
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 108 TVALLIFTILYNVLFYTVIKPSIDGPDDIP-----ASAPDTTMATNKSPE--AALVKELS 160
+V LL+FT L FY I PS PDD P AS P + T +SP + LV +
Sbjct: 9 SVLLLVFTFL---CFYDAIIPSHASPDDFPQCLSAASIPSQLVFTQRSPSFTSVLVSSIR 65
Query: 161 PPPFLEDSVQR 171
P F S R
Sbjct: 66 NPRFFTPSTVR 76
>gi|30248765|ref|NP_840835.1| translation initiation factor IF-2 [Nitrosomonas europaea ATCC
19718]
gi|39931260|sp|Q82WD0.1|IF2_NITEU RecName: Full=Translation initiation factor IF-2
gi|30180360|emb|CAD84672.1| putative translation initiation factor protein [Nitrosomonas
europaea ATCC 19718]
Length = 889
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 25 VNNPSPSVVARAVENNNSQNSKFEIDPEEARQALQRLDQQLKSLSNKQISSPKIKAADVK 84
V P P++V V+ + + EEAR+ + + +Q L KQ + AA
Sbjct: 120 VETPEPTIVKSVVDA-----EQMALRAEEARKRSELIARQAAELKEKQEKRRQQAAAQAN 174
Query: 85 ITRGPGPAEQET 96
+ + P PAEQE+
Sbjct: 175 VKKEPAPAEQES 186
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.128 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,607,771,966
Number of Sequences: 23463169
Number of extensions: 100104255
Number of successful extensions: 305411
Number of sequences better than 100.0: 410
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 391
Number of HSP's that attempted gapping in prelim test: 305014
Number of HSP's gapped (non-prelim): 418
length of query: 171
length of database: 8,064,228,071
effective HSP length: 131
effective length of query: 40
effective length of database: 9,285,520,228
effective search space: 371420809120
effective search space used: 371420809120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 71 (32.0 bits)