BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030821
         (171 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q82WD0|IF2_NITEU Translation initiation factor IF-2 OS=Nitrosomonas europaea (strain
           ATCC 19718 / NBRC 14298) GN=infB PE=3 SV=1
          Length = 889

 Score = 36.6 bits (83), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 25  VNNPSPSVVARAVENNNSQNSKFEIDPEEARQALQRLDQQLKSLSNKQISSPKIKAADVK 84
           V  P P++V   V+       +  +  EEAR+  + + +Q   L  KQ    +  AA   
Sbjct: 120 VETPEPTIVKSVVDA-----EQMALRAEEARKRSELIARQAAELKEKQEKRRQQAAAQAN 174

Query: 85  ITRGPGPAEQET 96
           + + P PAEQE+
Sbjct: 175 VKKEPAPAEQES 186


>sp|Q9TTS6|CCL11_BOVIN Eotaxin OS=Bos taurus GN=CCL11 PE=2 SV=1
          Length = 97

 Score = 33.5 bits (75), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 7  LSFLHNKPILSLERLNHYVNNPSPSVVARAVENNNSQNSKFEIDPEE--ARQALQRLDQQ 64
            F  +K  +S++RL  Y    S     +AV  N  QN K  +DP+E   + A++ L+Q+
Sbjct: 32 CCFNMSKKKISIQRLQSYRKITSSKCPQKAVIFNTKQNKKICVDPQEKWVQNAMEYLNQK 91

Query: 65 LKSL 68
           ++L
Sbjct: 92 SQTL 95


>sp|Q7TSH9|ZN184_MOUSE Zinc finger protein 184 OS=Mus musculus GN=Zfp184 PE=2 SV=1
          Length = 737

 Score = 32.3 bits (72), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 59  QRLDQQLKSLSNKQISSPKIKAADVKITRGPGPAEQETLEISGSFLTNTTVAL 111
           +R D  L+ L   Q   P+    +V+IT    P  +  L +S SF+T T VAL
Sbjct: 131 KRDDGSLEKLQANQQMLPR----EVQITEKTAPTCESNLSVSSSFITQTEVAL 179


>sp|Q70J99|UN13D_HUMAN Protein unc-13 homolog D OS=Homo sapiens GN=UNC13D PE=1 SV=1
          Length = 1090

 Score = 30.8 bits (68), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 23  HYVNNPSPSVVARAVENNNSQNSKFEIDPEEARQALQRL 61
           H + +P P+ V  A E        F ++PEE +Q LQR+
Sbjct: 65  HRLGHPEPNHVTEASELLRYLQEAFHVEPEEHQQTLQRV 103


>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3
          OS=Saccharomyces cerevisiae (strain ATCC 204508 /
          S288c) GN=NOT3 PE=1 SV=2
          Length = 836

 Score = 30.4 bits (67), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 36 AVENNNSQNSKFEIDPEEARQALQRLDQQLKSLSNKQISSPKIKAAD 82
          +  NN SQ  K E D +   + LQRL +Q+KS      SSP IK  D
Sbjct: 33 SCTNNPSQKDKLESDLKREVKKLQRLREQIKSWQ----SSPDIKDKD 75


>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
           SV=1
          Length = 1106

 Score = 30.0 bits (66), Expect = 7.3,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 36  AVENNNSQNSKFEIDPEEARQALQRLDQQLKSLSNKQISSPKIKAADVKITRGPGPAEQE 95
           A+E  + Q S   ID    R A   LD Q++ L  +Q+      A    +   P P  Q+
Sbjct: 61  ALEAADGQFSPTAIDARWLRPAPPALDPQMEPLIFQQLEIDHYVAPARPLPGAP-PPSQD 119

Query: 96  TLEISGSF-LTNTTVALLIFTILYNVLFYTVIKPSIDGPDDIPASAPDTTMATNKSPEAA 154
           ++ I  +F +TN  V++      +   FYT   P   GP+ +     + + A ++     
Sbjct: 120 SVPILRAFGVTNEGVSVCCHIHGFAPYFYTPAPPGF-GPEHLSELQRELSAAISRDQRGG 178

Query: 155 LVKELSPPPFL 165
             KEL+ P  L
Sbjct: 179 --KELTGPAVL 187


>sp|P37106|SR541_ARATH Signal recognition particle 54 kDa protein 1 OS=Arabidopsis
           thaliana GN=SRP-54A PE=2 SV=1
          Length = 479

 Score = 30.0 bits (66), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 52  EEARQALQRLDQQLKSLSNKQISSPKIKAAD----VKITRGPGPAEQETLEI 99
           EE+R  ++R    + S++NK++ SP  K  +    ++I RG G   +E +E+
Sbjct: 366 EESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEM 417


>sp|Q8NFJ9|BBS1_HUMAN Bardet-Biedl syndrome 1 protein OS=Homo sapiens GN=BBS1 PE=1 SV=1
          Length = 593

 Score = 30.0 bits (66), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 35  RAVENNNSQNSKFEIDP-----EEARQALQRLDQQLKSLSNKQISSPKIKAADVKITRGP 89
           R  E   + +  F+ D        AR  LQ L+  L  LS       K+ A    + +G 
Sbjct: 440 REREAGTAMHRAFQTDLYLLRLRAARAYLQALESSLSPLSTTAREPLKLHA----VVQGL 495

Query: 90  GPAEQETLEISGSFLTNTTVALLIFTILYNVLFYTVIKPSIDGPDDIPA 138
           GP  + TL +  +  T   + LL+   LYN   Y++ +     P  +P 
Sbjct: 496 GPTFKLTLHLQNTSTTRPVLGLLV-CFLYNEALYSLPRAFFKVPLLVPG 543


>sp|Q6WRH6|PYLS_METBA Pyrrolysine--tRNA ligase OS=Methanosarcina barkeri GN=pylS PE=1
           SV=1
          Length = 419

 Score = 29.6 bits (65), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 25  VNNPSPSVVARAVENNNSQNS--KFEIDPEEARQALQRLDQQLKSLSNKQISSPKIKAAD 82
           VNN      ARA  ++  + +  +  +  E+    L R  +   S+  + +S+PK+K A 
Sbjct: 48  VNNSRSCRTARAFRHHKYRKTCKRCRVSDEDINNFLTRSTESKNSVKVRVVSAPKVKKAM 107

Query: 83  VK-ITRGPGPAEQETLEISGSFLTNTT 108
            K ++R P P E     +S    TNT+
Sbjct: 108 PKSVSRAPKPLEN---SVSAKASTNTS 131


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.128    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,651,709
Number of Sequences: 539616
Number of extensions: 2356684
Number of successful extensions: 7346
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 7322
Number of HSP's gapped (non-prelim): 64
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)