Query 030821
Match_columns 171
No_of_seqs 14 out of 16
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 07:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z23_A CRK-associated substrat 47.7 13 0.00044 29.6 3.0 20 48-67 6-25 (163)
2 2l81_A Enhancer of filamentati 47.2 13 0.00045 30.0 3.0 22 46-67 14-35 (176)
3 3arc_T Photosystem II reaction 46.9 14 0.00048 22.9 2.4 17 102-118 7-23 (32)
4 1z8u_A Alpha-hemoglobin stabil 39.2 23 0.00078 26.8 3.0 26 46-71 55-80 (102)
5 3m91_A Proteasome-associated A 36.5 25 0.00086 23.1 2.6 23 47-69 28-50 (51)
6 2l5g_A GPS2 protein, G protein 33.6 22 0.00074 22.9 1.8 25 48-72 7-31 (38)
7 2e5y_A ATP synthase epsilon ch 32.6 35 0.0012 25.1 3.1 20 48-67 87-106 (133)
8 1aqt_A ATP synthase; hydrolase 30.6 36 0.0012 25.2 2.9 20 48-67 88-107 (138)
9 2rq6_A ATP synthase epsilon ch 29.7 40 0.0014 25.0 3.1 22 48-69 86-107 (138)
10 1qc6_A EVH1 domain from ENA/VA 29.4 40 0.0014 24.6 2.9 28 50-77 94-121 (130)
11 2ls2_A High affinity copper up 31.0 15 0.00052 21.3 0.0 17 104-120 7-23 (26)
12 2jy0_A Protease NS2-3; membran 25.1 32 0.0011 20.5 1.4 11 108-118 11-21 (27)
13 1lyp_A CAP18; lipopolysacchari 24.5 61 0.0021 19.9 2.7 19 51-69 10-28 (32)
14 2z1c_A Hydrogenase expression/ 24.4 43 0.0015 23.2 2.2 20 48-68 52-71 (75)
15 3i4a_A N(G),N(G)-dimethylargin 22.8 72 0.0025 26.2 3.6 66 21-90 37-104 (308)
16 2xok_H ATP synthase; hydrolase 22.2 51 0.0018 25.3 2.5 21 48-68 117-137 (160)
17 1mof_A Moloney murine leukemia 22.1 63 0.0022 21.8 2.6 21 50-70 3-23 (55)
18 3o6p_A Peptide ABC transporter 22.0 47 0.0016 24.2 2.1 18 46-63 75-92 (229)
19 3d3r_A Hydrogenase assembly ch 21.5 61 0.0021 23.9 2.7 19 48-66 76-94 (103)
No 1
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=47.74 E-value=13 Score=29.64 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHHHHHHhh
Q 030821 48 EIDPEEARQALQRLDQQLKS 67 (171)
Q Consensus 48 eidpekAreaL~eLDqQLes 67 (171)
-+|.|.|+|+|.+|.|++++
T Consensus 6 ~Ldld~A~E~L~rLQ~~v~~ 25 (163)
T 1z23_A 6 PLELEVAVETLARLQQGVST 25 (163)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999876
No 2
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=47.16 E-value=13 Score=30.00 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.6
Q ss_pred cccCCHHHHHHHHHHHHHHHhh
Q 030821 46 KFEIDPEEARQALQRLDQQLKS 67 (171)
Q Consensus 46 q~eidpekAreaL~eLDqQLes 67 (171)
+--+|.|.|+|+|.+|.|++++
T Consensus 14 eL~Ldld~A~E~L~rLQ~~v~~ 35 (176)
T 2l81_A 14 RLFLDPDTAIERLQRLQQALEM 35 (176)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999876
No 3
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=46.90 E-value=14 Score=22.90 Aligned_cols=17 Identities=29% Similarity=0.714 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 030821 102 SFLTNTTVALLIFTILY 118 (171)
Q Consensus 102 Sfla~sa~aLvifTIFy 118 (171)
+|+-.+|+|+++|.||+
T Consensus 7 t~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 7 VFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 46667777777777764
No 4
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=39.18 E-value=23 Score=26.77 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=21.1
Q ss_pred cccCCHHHHHHHHHHHHHHHhhcccc
Q 030821 46 KFEIDPEEARQALQRLDQQLKSLSNK 71 (171)
Q Consensus 46 q~eidpekAreaL~eLDqQLesLs~~ 71 (171)
+-..+++|-.+||+||.|.|..|+.+
T Consensus 55 ~~~GeqqEqdrAlqel~qeL~tl~~p 80 (102)
T 1z8u_A 55 QVTGEPQERDKALQELRQELNTLANP 80 (102)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHhhH
Confidence 33456788889999999999999874
No 5
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=36.47 E-value=25 Score=23.14 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=17.7
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcc
Q 030821 47 FEIDPEEARQALQRLDQQLKSLS 69 (171)
Q Consensus 47 ~eidpekAreaL~eLDqQLesLs 69 (171)
-.-.-.+||..|.+|.+||+.|+
T Consensus 28 L~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 28 LMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34446788888999999988875
No 6
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.62 E-value=22 Score=22.85 Aligned_cols=25 Identities=20% Similarity=0.504 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhccccc
Q 030821 48 EIDPEEARQALQRLDQQLKSLSNKQ 72 (171)
Q Consensus 48 eidpekAreaL~eLDqQLesLs~~q 72 (171)
..+-++.|+-+.+|..+|++|.+++
T Consensus 7 ~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 7 RMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999998864
No 7
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A
Probab=32.60 E-value=35 Score=25.07 Aligned_cols=20 Identities=35% Similarity=0.518 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHHHhh
Q 030821 48 EIDPEEARQALQRLDQQLKS 67 (171)
Q Consensus 48 eidpekAreaL~eLDqQLes 67 (171)
+||.++|++++++..++|+.
T Consensus 87 diD~~~a~~a~~~Ae~~l~~ 106 (133)
T 2e5y_A 87 DIDVLRAKAAKERAERRLQS 106 (133)
T ss_dssp GCCHHHHHHHHHHHHHHHTC
T ss_pred hCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999875
No 8
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=30.55 E-value=36 Score=25.18 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHHHhh
Q 030821 48 EIDPEEARQALQRLDQQLKS 67 (171)
Q Consensus 48 eidpekAreaL~eLDqQLes 67 (171)
+||.++|++++++..++|+.
T Consensus 88 diD~~~a~~a~~~Ae~~l~~ 107 (138)
T 1aqt_A 88 DLDEARAMEAKRKAEEHISS 107 (138)
T ss_dssp GCCHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999875
No 9
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=29.66 E-value=40 Score=24.96 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.5
Q ss_pred cCCHHHHHHHHHHHHHHHhhcc
Q 030821 48 EIDPEEARQALQRLDQQLKSLS 69 (171)
Q Consensus 48 eidpekAreaL~eLDqQLesLs 69 (171)
+||.++|++++++..++|+.-.
T Consensus 86 dID~~~a~~a~~~Ae~~l~~~~ 107 (138)
T 2rq6_A 86 TIDLEKAKAEFAAAQAALAQAE 107 (138)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCc
Confidence 7999999999999999997643
No 10
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=29.36 E-value=40 Score=24.64 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHHhhcccccCCCCC
Q 030821 50 DPEEARQALQRLDQQLKSLSNKQISSPK 77 (171)
Q Consensus 50 dpekAreaL~eLDqQLesLs~~q~rpP~ 77 (171)
+.+||.+-.+.+++.|+.++++...||.
T Consensus 94 se~eA~~F~~~~~~al~~~~~~~~~~~~ 121 (130)
T 1qc6_A 94 SKEEATTFSNAMLFALNIMNSQEGGPST 121 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 6899999999999999999986555543
No 11
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=30.99 E-value=15 Score=21.26 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030821 104 LTNTTVALLIFTILYNV 120 (171)
Q Consensus 104 la~sa~aLvifTIFyNV 120 (171)
+.+|.+|.|+++++|--
T Consensus 7 ~v~Sci~ifll~~~YE~ 23 (26)
T 2ls2_A 7 MAGAFVAVFLLAMFYEG 23 (26)
Confidence 46788889999998853
No 12
>2jy0_A Protease NS2-3; membrane segment, HCV NS2 protein, membrane protein, viral protein; NMR {Synthetic}
Probab=25.09 E-value=32 Score=20.48 Aligned_cols=11 Identities=9% Similarity=0.162 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q 030821 108 TVALLIFTILY 118 (171)
Q Consensus 108 a~aLvifTIFy 118 (171)
++.|+++|||+
T Consensus 11 ~~vlv~lti~T 21 (27)
T 2jy0_A 11 GAVFVGLVLLT 21 (27)
T ss_dssp SHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 35677777775
No 13
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=24.48 E-value=61 Score=19.93 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 030821 51 PEEARQALQRLDQQLKSLS 69 (171)
Q Consensus 51 pekAreaL~eLDqQLesLs 69 (171)
..|-.|.|++.-|.||+|-
T Consensus 10 rnkikeklkkigqkiqgll 28 (32)
T 1lyp_A 10 RNKIKEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3567889999999999984
No 14
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=24.38 E-value=43 Score=23.22 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=15.7
Q ss_pred cCCHHHHHHHHHHHHHHHhhc
Q 030821 48 EIDPEEARQALQRLDQQLKSL 68 (171)
Q Consensus 48 eidpekAreaL~eLDqQLesL 68 (171)
.||+|+|+|.|+-|++ |..+
T Consensus 52 ~ideeeA~etl~~l~e-l~~~ 71 (75)
T 2z1c_A 52 KLDEKKAMEILEAWAE-VEKA 71 (75)
T ss_dssp EECHHHHHHHHHHHHH-HHHH
T ss_pred hCCHHHHHHHHHHHHH-HHhh
Confidence 6899999999998866 4434
No 15
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=22.81 E-value=72 Score=26.16 Aligned_cols=66 Identities=14% Similarity=0.045 Sum_probs=39.6
Q ss_pred hhcccCCCCcchhhhhhhccCccCCcccCCHHHHHHHHHHHHHHHh-hcccccCCC-CCCccccccccCCCC
Q 030821 21 LNHYVNNPSPSVVARAVENNNSQNSKFEIDPEEARQALQRLDQQLK-SLSNKQISS-PKIKAADVKITRGPG 90 (171)
Q Consensus 21 ~~~~v~~~Sss~~v~a~ek~~~~~~q~eidpekAreaL~eLDqQLe-sLs~~q~rp-P~~~~sDv~~tr~~~ 90 (171)
++-.|+.+++|+. .+.... + ..-.+|.++|++-.++|-+.|+ ++-=.-.+. |.+.-.|+..+||..
T Consensus 37 ~~aivr~p~~s~~-~~~~~~-~--~~~~~d~~~A~~q~~~l~~~Lr~~~Gv~V~~l~~~~~~Pd~vF~rD~~ 104 (308)
T 3i4a_A 37 THAVVRALPESLG-QHALRS-A--KGEEVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVA 104 (308)
T ss_dssp SEEEEECCCTTHH-HHSCCS-S--CCCCCCHHHHHHHHHHHHHHHHTTTCCEEEEECCCTTCTTTTCGGGGE
T ss_pred eEEEEeCCCHHHh-cccccc-c--cCCCCCHHHHHHHHHHHHHHHhhcCCCEEEEcCCCCCCCCeEeecCeE
Confidence 4556788888844 331111 1 2336999999999999999997 653222222 222335666666654
No 16
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=22.17 E-value=51 Score=25.33 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhc
Q 030821 48 EIDPEEARQALQRLDQQLKSL 68 (171)
Q Consensus 48 eidpekAreaL~eLDqQLesL 68 (171)
+||.++|++++++..++|+.-
T Consensus 117 dID~~~A~~a~~~Ae~~l~~~ 137 (160)
T 2xok_H 117 SFSQENIKNLLAEAKKNVSSS 137 (160)
T ss_dssp TTC-CHHHHHHHHHHHHHHTC
T ss_pred hCCHHHHHHHHHHHHHHHHcC
Confidence 899999999999999999764
No 17
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=22.06 E-value=63 Score=21.78 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHhhccc
Q 030821 50 DPEEARQALQRLDQQLKSLSN 70 (171)
Q Consensus 50 dpekAreaL~eLDqQLesLs~ 70 (171)
|-++-++++..|..||.||++
T Consensus 3 dl~~~~~si~~l~~ql~sla~ 23 (55)
T 1mof_A 3 DLREVEKSISNLEKSLTSLSE 23 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999986
No 18
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=22.03 E-value=47 Score=24.25 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=15.2
Q ss_pred cccCCHHHHHHHHHHHHH
Q 030821 46 KFEIDPEEARQALQRLDQ 63 (171)
Q Consensus 46 q~eidpekAreaL~eLDq 63 (171)
.|+-|+|||++-|+|.--
T Consensus 75 ~~~~d~~kAk~LL~eaG~ 92 (229)
T 3o6p_A 75 QIEYDTKKAKEYWEKAKK 92 (229)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCc
Confidence 578899999999998743
No 19
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=21.45 E-value=61 Score=23.95 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=15.3
Q ss_pred cCCHHHHHHHHHHHHHHHh
Q 030821 48 EIDPEEARQALQRLDQQLK 66 (171)
Q Consensus 48 eidpekAreaL~eLDqQLe 66 (171)
.||+|+|+|.|+-|++-.+
T Consensus 76 kIDeeeA~etl~~l~el~~ 94 (103)
T 3d3r_A 76 KIDRNDALQSLELYQEIVS 94 (103)
T ss_dssp EECHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHH
Confidence 6899999999998876433
Done!