Query 030821
Match_columns 171
No_of_seqs 14 out of 16
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 07:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030821.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030821hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h70a_ d.126.1.3 (A:) Dimethy 61.4 3.7 0.00027 29.4 3.7 63 23-90 6-69 (255)
2 d2z1ca1 b.40.14.1 (A:2-72) Hyd 50.4 5.3 0.00039 25.9 2.7 21 48-68 51-71 (71)
3 d3d3ra1 b.40.14.1 (A:1-76) Hyd 46.9 6.2 0.00045 25.9 2.6 21 48-68 55-75 (76)
4 d1z8ua1 a.7.11.1 (A:2-91) Alph 39.6 11 0.00078 26.3 3.0 26 46-71 54-79 (90)
5 d1lrza1 a.2.7.4 (A:245-309) Me 25.7 17 0.0012 23.2 2.0 22 49-70 30-51 (65)
6 d1x4ea1 d.58.7.1 (A:8-79) RNA- 22.6 29 0.0021 20.0 2.5 15 50-64 49-63 (72)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 20.2 34 0.0025 19.4 2.3 11 108-118 13-23 (30)
8 d2f06a1 d.58.18.11 (A:71-141) 19.6 25 0.0018 21.7 1.9 11 50-60 47-57 (71)
9 d2nsfa1 a.213.1.4 (A:1-160) Mi 19.0 47 0.0034 21.5 3.3 29 50-78 12-40 (160)
10 d2ot2a1 b.40.14.1 (A:1-90) Hyd 18.2 38 0.0028 22.5 2.7 18 48-65 58-75 (90)
No 1
>d1h70a_ d.126.1.3 (A:) Dimethylarginine dimethylaminohydrolase DDAH {Pseudomonas aeruginosa [TaxId: 287]}
Probab=61.37 E-value=3.7 Score=29.43 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=42.6
Q ss_pred cccCCCCcchhhhhhhccCccCCcccCCHHHHHHHHHHHHHHHhhcccccCCCCCCc-cccccccCCCC
Q 030821 23 HYVNNPSPSVVARAVENNNSQNSKFEIDPEEARQALQRLDQQLKSLSNKQISSPKIK-AADVKITRGPG 90 (171)
Q Consensus 23 ~~v~~~Sss~~v~a~ek~~~~~~q~eidpekAreaL~eLDqQLesLs~~q~rpP~~~-~sDv~~tr~~~ 90 (171)
-.|+-+++| ++.|+...+.+ .+|.++|++-.+.|-+-|+...=+=.+.|..+ -.|+..+||..
T Consensus 6 ~~~r~p~~s-~~~~~~~~~~~----~~d~~~a~~e~~~l~~~L~~~Gv~V~~~~~~~~~pd~vF~rD~~ 69 (255)
T d1h70a_ 6 IIARTPARS-LVDGLTSSHLG----KPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPV 69 (255)
T ss_dssp EEEECCCGG-GGGCCCSCCSC----CCCHHHHHHHHHHHHHHHTTSSCEEEEECCCTTCTTTTCTTTTE
T ss_pred EEEcCCCHH-HhhcccccccC----CCCHHHHHHHHHHHHHHHHHcCCEEEEeCCCCCCcceeeecceE
Confidence 346677777 45666544332 68999999999999888887654443433333 46888888776
No 2
>d2z1ca1 b.40.14.1 (A:2-72) Hydrogenase expression/formation protein HypC {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=50.39 E-value=5.3 Score=25.93 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHHHHHHhhc
Q 030821 48 EIDPEEARQALQRLDQQLKSL 68 (171)
Q Consensus 48 eidpekAreaL~eLDqQLesL 68 (171)
.||+|+|+|.|+-|++-.+.|
T Consensus 51 ~id~eeA~e~l~~~~el~~am 71 (71)
T d2z1ca1 51 KLDEKKAMEILEAWAEVEKAM 71 (71)
T ss_dssp EECHHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHHHHhhC
Confidence 689999999999888776653
No 3
>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein HypC {Shewanella oneidensis [TaxId: 70863]}
Probab=46.90 E-value=6.2 Score=25.90 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHHHHHHhhc
Q 030821 48 EIDPEEARQALQRLDQQLKSL 68 (171)
Q Consensus 48 eidpekAreaL~eLDqQLesL 68 (171)
.||+|+|+|.|+-|++-++.+
T Consensus 55 ~id~eeA~e~l~~l~el~~~~ 75 (76)
T d3d3ra1 55 KIDRNDALQSLELYQEIVSKL 75 (76)
T ss_dssp EECHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhc
Confidence 689999999999998877654
No 4
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.55 E-value=11 Score=26.28 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=21.7
Q ss_pred cccCCHHHHHHHHHHHHHHHhhcccc
Q 030821 46 KFEIDPEEARQALQRLDQQLKSLSNK 71 (171)
Q Consensus 46 q~eidpekAreaL~eLDqQLesLs~~ 71 (171)
+-..|++|--+|++||.|.|+.|+++
T Consensus 54 ~~~GeqqEqdrA~~el~qeL~tla~~ 79 (90)
T d1z8ua1 54 QVTGEPQERDKALQELRQELNTLANP 79 (90)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44557888999999999999999874
No 5
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=25.69 E-value=17 Score=23.24 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHHHhhccc
Q 030821 49 IDPEEARQALQRLDQQLKSLSN 70 (171)
Q Consensus 49 idpekAreaL~eLDqQLesLs~ 70 (171)
++-+|+...+.+|.+|++++..
T Consensus 30 P~skK~~nk~~el~~Q~~s~~~ 51 (65)
T d1lrza1 30 PENKKAHNKRDNLQQQLDANEQ 51 (65)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999998754
No 6
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.59 E-value=29 Score=19.99 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHH
Q 030821 50 DPEEARQALQRLDQQ 64 (171)
Q Consensus 50 dpekAreaL~eLDqQ 64 (171)
++|.|.+|+++|+.+
T Consensus 49 ~~~~A~~Ai~~lng~ 63 (72)
T d1x4ea1 49 SPSAAQKAVTALKAS 63 (72)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCC
Confidence 699999999999864
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.21 E-value=34 Score=19.40 Aligned_cols=11 Identities=36% Similarity=0.926 Sum_probs=8.0
Q ss_pred HHHHHHHHHHH
Q 030821 108 TVALLIFTILY 118 (171)
Q Consensus 108 a~aLvifTIFy 118 (171)
..||++|.||+
T Consensus 13 ~i~lfffaiff 23 (30)
T d2axtt1 13 IIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 35788888875
No 8
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=19.62 E-value=25 Score=21.67 Aligned_cols=11 Identities=9% Similarity=0.289 Sum_probs=9.8
Q ss_pred CHHHHHHHHHH
Q 030821 50 DPEEARQALQR 60 (171)
Q Consensus 50 dpekAreaL~e 60 (171)
|||+|+++|++
T Consensus 47 d~~~a~~~L~~ 57 (71)
T d2f06a1 47 NMDKCIEVLKE 57 (71)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 79999999986
No 9
>d2nsfa1 a.213.1.4 (A:1-160) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Probab=19.00 E-value=47 Score=21.50 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHhhcccccCCCCCC
Q 030821 50 DPEEARQALQRLDQQLKSLSNKQISSPKI 78 (171)
Q Consensus 50 dpekAreaL~eLDqQLesLs~~q~rpP~~ 78 (171)
..+-+|++...+.+.+++|.+.+-.-|.+
T Consensus 12 ~l~~~~~a~a~f~~~v~~l~d~~w~~Pt~ 40 (160)
T d2nsfa1 12 RLTLARLGTSHYSRQLSLVDNAEFGEHSL 40 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGTTSBCS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhcCCCC
Confidence 35678999999999999999998877755
No 10
>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein HypC {Escherichia coli [TaxId: 562]}
Probab=18.18 E-value=38 Score=22.52 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.7
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 030821 48 EIDPEEARQALQRLDQQL 65 (171)
Q Consensus 48 eidpekAreaL~eLDqQL 65 (171)
.||.++|++.|+-|++-.
T Consensus 58 ~ideeeA~etl~ll~el~ 75 (90)
T d2ot2a1 58 VINEAEARDTLDALQNMF 75 (90)
T ss_dssp EECHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHH
Confidence 789999999998776644
Done!