BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030822
MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG
GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR
YFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGCNRFSHTT

High Scoring Gene Products

Symbol, full name Information P value
AT4G36960 protein from Arabidopsis thaliana 2.4e-37
HNRNPA1
Heterogeneous nuclear ribonucleoprotein A1 		protein from Homo sapiens 2.0e-10
AT5G55550 protein from Arabidopsis thaliana 8.3e-08
CG7804 protein from Drosophila melanogaster 8.7e-08
AT4G26650 protein from Arabidopsis thaliana 4.4e-07
PF11_0083
nucleic acid binding factor, putative 		gene from Plasmodium falciparum 1.2e-06
PF11_0083
Nucleic acid binding protein, putative 		protein from Plasmodium falciparum 3D7 1.2e-06
AT3G13224 protein from Arabidopsis thaliana 1.4e-06
AT3G07810 protein from Arabidopsis thaliana 1.5e-06
AT4G14300 protein from Arabidopsis thaliana 4.9e-06
Tardbp
TAR DNA binding protein 		gene from Rattus norvegicus 8.1e-06
TARDBP
Uncharacterized protein 		protein from Bos taurus 8.8e-06
TARDBP
TAR DNA-binding protein 43 		protein from Homo sapiens 1.3e-05
TARDBP
TAR DNA-binding protein 43 		protein from Homo sapiens 1.3e-05
TARDBP
TAR DNA binding protein, isoform CRA_d 		protein from Homo sapiens 1.3e-05
tardbpl
TAR DNA binding protein, like 		gene_product from Danio rerio 1.4e-05
DDB_G0292422
RNA-binding region RNP-1 domain-containing protein 		gene from Dictyostelium discoideum 1.7e-05
tardbp
TAR DNA binding protein 		gene_product from Danio rerio 2.1e-05
Rbp6
RNA-binding protein 6 		protein from Drosophila melanogaster 2.2e-05
LOC100621383
Uncharacterized protein 		protein from Sus scrofa 2.6e-05
TARDBP
Uncharacterized protein 		protein from Bos taurus 2.7e-05
TARDBP
Uncharacterized protein 		protein from Canis lupus familiaris 2.7e-05
HNRNPAB
Uncharacterized protein 		protein from Canis lupus familiaris 2.7e-05
HNRNPAB
Uncharacterized protein 		protein from Bos taurus 2.8e-05
msi2a
musashi homolog 2a (Drosophila) 		gene_product from Danio rerio 2.9e-05
Tardbp
TAR DNA binding protein 		protein from Mus musculus 2.9e-05
HNRNPAB
Uncharacterized protein 		protein from Gallus gallus 3.0e-05
HNRNPAB
Heterogeneous nuclear ribonucleoprotein A/B 		protein from Homo sapiens 3.3e-05
Hnrnpab
heterogeneous nuclear ribonucleoprotein A/B 		protein from Mus musculus 3.4e-05
HNRNPAB
Heterogeneous nuclear ribonucleoprotein A/B 		protein from Homo sapiens 3.5e-05
Hnrnpab
heterogeneous nuclear ribonucleoprotein A/B 		gene from Rattus norvegicus 3.9e-05
TARDBP
TAR DNA-binding protein 43 		protein from Homo sapiens 4.0e-05
E2R5N6
Uncharacterized protein 		protein from Canis lupus familiaris 5.0e-05
TARDBP
TAR DNA-binding protein 43 		protein from Gallus gallus 5.1e-05
TARDBP
TAR DNA-binding protein 43 		protein from Gallus gallus 5.1e-05
HNRNPAB
Heterogeneous nuclear ribonucleoprotein A/B 		protein from Homo sapiens 5.4e-05
Hnrnpab
Type A/B hnRNP p40 (Heterogeneous nuclear ribonucleoprotein) 		protein from Rattus norvegicus 5.4e-05
TBPH
TAR DNA-binding protein-43 homolog 		protein from Drosophila melanogaster 5.5e-05
LOC100859627
Uncharacterized protein 		protein from Gallus gallus 5.6e-05
F1Q2T4
Uncharacterized protein 		protein from Canis lupus familiaris 6.9e-05
HNRNPAB
Uncharacterized protein 		protein from Gallus gallus 6.9e-05
LOC100859627
Uncharacterized protein 		protein from Gallus gallus 7.0e-05
RBP1
AT1G58470 		protein from Arabidopsis thaliana 7.6e-05
Hrb87F
Heterogeneous nuclear ribonucleoprotein at 87F 		protein from Drosophila melanogaster 7.8e-05
F1PGQ0
Uncharacterized protein 		protein from Canis lupus familiaris 7.9e-05
msi1
musashi homolog 1 (Drosophila) 		gene_product from Danio rerio 8.8e-05
AT2G33410 protein from Arabidopsis thaliana 9.5e-05
dazap1
DAZ associated protein 1 		gene_product from Danio rerio 0.00010
LOC100621383
Uncharacterized protein 		protein from Sus scrofa 0.00010
Q9XSY6
HnRNP A/B related protein 		protein from Felis catus 0.00011
LOC100522980
Uncharacterized protein 		protein from Sus scrofa 0.00011
LOC100522063
Uncharacterized protein 		protein from Sus scrofa 0.00011
Hrb98DE
Heterogeneous nuclear ribonucleoprotein at 98DE 		protein from Drosophila melanogaster 0.00011
LOC100360986
mCG1035404-like 		gene from Rattus norvegicus 0.00012
H28G03.1 gene from Caenorhabditis elegans 0.00012
HNRNPA3
Heterogeneous nuclear ribonucleoprotein A3 		protein from Homo sapiens 0.00013
LOC100859627
Uncharacterized protein 		protein from Gallus gallus 0.00013
msi
musashi 		protein from Drosophila melanogaster 0.00013
Hrb27C
Heterogeneous nuclear ribonucleoprotein at 27C 		protein from Drosophila melanogaster 0.00013
RBM4B
RNA-binding protein 4B 		protein from Homo sapiens 0.00014
Rbm4
RNA binding motif protein 4 		gene from Rattus norvegicus 0.00014
zgc:77052 gene_product from Danio rerio 0.00015
MSI1
Uncharacterized protein 		protein from Sus scrofa 0.00018
DDB_G0287335
RNA-binding region RNP-1 domain-containing protein 		gene from Dictyostelium discoideum 0.00018
MSI1
Uncharacterized protein 		protein from Bos taurus 0.00020
HNRNPA3
Uncharacterized protein 		protein from Canis lupus familiaris 0.00020
HNRNPA3
Heterogeneous nuclear ribonucleoprotein A3 		protein from Homo sapiens 0.00020
HNRNPA3
Uncharacterized protein 		protein from Sus scrofa 0.00020
Hnrnpa3
heterogeneous nuclear ribonucleoprotein A3 		gene from Rattus norvegicus 0.00020
HNRNPA3
Uncharacterized protein 		protein from Bos taurus 0.00020
RBP47
Polyadenylate-binding protein RBP47 		protein from Nicotiana plumbaginifolia 0.00021
RBM4B
RNA-binding protein 4B 		protein from Homo sapiens 0.00022
MSI1
RNA-binding protein Musashi homolog 1 		protein from Homo sapiens 0.00023
E2RF37
Uncharacterized protein 		protein from Canis lupus familiaris 0.00026
RBM4
RNA-binding protein 4 		protein from Homo sapiens 0.00027
HNRNPD
Heterogeneous nuclear ribonucleoprotein D0 		protein from Homo sapiens 0.00031
Hnrnpa0
heterogeneous nuclear ribonucleoprotein A0 		protein from Mus musculus 0.00032
Msi1
musashi RNA-binding protein 1 		protein from Mus musculus 0.00032
Msi1
musashi RNA-binding protein 1 		gene from Rattus norvegicus 0.00032
Msi1
RNA-binding protein Musashi homolog 1 		protein from Rattus norvegicus 0.00032
PFD0700c
RNA binding protein, putative 		gene from Plasmodium falciparum 0.00033
PFD0700c
RNA binding protein, putative 		protein from Plasmodium falciparum 3D7 0.00033
Hnrnpa0
heterogeneous nuclear ribonucleoprotein A0 		gene from Rattus norvegicus 0.00035
RBM4
RNA-binding protein 4 		protein from Homo sapiens 0.00037
HNRNPD
Heterogeneous nuclear ribonucleoprotein D0 		protein from Homo sapiens 0.00041

The BLAST search returned 13 gene products which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030822
        (171 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi...   372  2.4e-37   2
UNIPROTKB|F8VYN5 - symbol:HNRNPA1 "Heterogeneous nuclear ...    91  2.0e-10   2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi...    92  8.3e-08   2
FB|FBgn0036496 - symbol:CG7804 species:7227 "Drosophila m...   128  8.7e-08   1
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi...   108  4.4e-07   2
GENEDB_PFALCIPARUM|PF11_0083 - symbol:PF11_0083 "nucleic ...   100  1.2e-06   2
UNIPROTKB|Q8IIT2 - symbol:PF11_0083 "Nucleic acid binding...   100  1.2e-06   2
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara...    92  1.4e-06   2
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi...   105  1.5e-06   3
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme...    89  2.2e-06   2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi...   121  4.9e-06   1
UNIPROTKB|F1M6U1 - symbol:F1M6U1 "Uncharacterized protein...    86  5.7e-06   2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac...    85  5.9e-06   2
RGD|1310906 - symbol:Tardbp "TAR DNA binding protein" spe...   108  8.1e-06   2
UNIPROTKB|D4A9S4 - symbol:Tardbp "Protein Tardbp" species...   108  8.5e-06   2
UNIPROTKB|Q2KJ45 - symbol:TARDBP "Uncharacterized protein...   109  8.8e-06   2
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein...    92  1.2e-05   2
UNIPROTKB|B1AKP7 - symbol:TARDBP "TAR DNA-binding protein...   107  1.3e-05   2
UNIPROTKB|B4DJ45 - symbol:TARDBP "cDNA FLJ58188, highly s...   107  1.3e-05   2
UNIPROTKB|G3V162 - symbol:TARDBP "TAR DNA-binding protein...   107  1.3e-05   2
ZFIN|ZDB-GENE-031030-1 - symbol:tardbpl "TAR DNA binding ...   107  1.4e-05   2
DICTYBASE|DDB_G0292422 - symbol:DDB_G0292422 "RNA-binding...    87  1.7e-05   2
ZFIN|ZDB-GENE-030131-3777 - symbol:tardbp "TAR DNA bindin...   109  2.1e-05   2
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec...    83  2.2e-05   2
UNIPROTKB|I3L7S7 - symbol:LOC100621383 "Uncharacterized p...   105  2.6e-05   2
UNIPROTKB|G3MX91 - symbol:TARDBP "Uncharacterized protein...   109  2.7e-05   2
UNIPROTKB|E2QS43 - symbol:TARDBP "Uncharacterized protein...   109  2.7e-05   2
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein...    86  2.7e-05   2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei...    86  2.7e-05   2
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei...    86  2.8e-05   2
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2...    81  2.9e-05   2
MGI|MGI:2387629 - symbol:Tardbp "TAR DNA binding protein"...   108  2.9e-05   2
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei...    86  3.0e-05   2
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ...    86  3.3e-05   2
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r...    87  3.4e-05   2
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie...    87  3.4e-05   2
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ...    86  3.5e-05   2
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc...    87  3.9e-05   2
UNIPROTKB|Q13148 - symbol:TARDBP "TAR DNA-binding protein...   107  4.0e-05   2
UNIPROTKB|E2R5N6 - symbol:E2R5N6 "Uncharacterized protein...    87  5.0e-05   2
UNIPROTKB|F1NBY1 - symbol:TARDBP "TAR DNA-binding protein...   107  5.1e-05   2
UNIPROTKB|Q5ZLN5 - symbol:TARDBP "TAR DNA-binding protein...   107  5.1e-05   2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci...    87  5.4e-05   2
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ...    86  5.4e-05   2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_...    87  5.4e-05   2
FB|FBgn0025790 - symbol:TBPH "TAR DNA-binding protein-43 ...   116  5.5e-05   1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p...    83  5.6e-05   2
UNIPROTKB|F1Q2T4 - symbol:F1Q2T4 "Uncharacterized protein...    84  6.9e-05   2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei...    86  6.9e-05   2
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p...    83  7.0e-05   2
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ...    89  7.6e-05   2
FB|FBgn0004237 - symbol:Hrb87F "Heterogeneous nuclear rib...    84  7.8e-05   2
UNIPROTKB|F1PGQ0 - symbol:F1PGQ0 "Uncharacterized protein...    82  7.9e-05   2
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ...    81  8.8e-05   2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi...   107  9.5e-05   2
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr...   113  0.00010   1
UNIPROTKB|I3LNA4 - symbol:LOC100621383 "Uncharacterized p...   105  0.00010   2
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote...    86  0.00011   2
UNIPROTKB|F1SCL3 - symbol:LOC100522980 "Uncharacterized p...    82  0.00011   2
UNIPROTKB|F1SCM6 - symbol:LOC100522063 "Uncharacterized p...    82  0.00011   2
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri...    79  0.00011   2
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein...    79  0.00012   2
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci...    83  0.00012   2
WB|WBGene00019249 - symbol:H28G03.1 species:6239 "Caenorh...   108  0.00012   2
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ...    83  0.00013   2
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p...    83  0.00013   2
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso...    80  0.00013   2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib...    87  0.00013   2
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ...   100  0.00014   1
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s...   100  0.00014   1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ...    82  0.00015   2
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ...    83  0.00017   2
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ...    82  0.00018   2
DICTYBASE|DDB_G0287335 - symbol:DDB_G0287335 "RNA-binding...    92  0.00018   1
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ...    82  0.00020   2
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei...    83  0.00020   2
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ...    83  0.00020   2
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei...    83  0.00020   2
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu...    83  0.00020   2
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei...    83  0.00020   2
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr...   111  0.00021   1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ...   100  0.00022   1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas...    82  0.00023   2
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein...    78  0.00024   2
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas...    81  0.00024   2
UNIPROTKB|E2RF37 - symbol:E2RF37 "Uncharacterized protein...    79  0.00026   2
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp...   100  0.00027   1
UNIPROTKB|D4A1X0 - symbol:D4A1X0 "Uncharacterized protein...    84  0.00028   2
UNIPROTKB|D6RD83 - symbol:HNRNPD "Heterogeneous nuclear r...    90  0.00031   1
UNIPROTKB|F1LUM4 - symbol:F1LUM4 "Uncharacterized protein...    75  0.00031   2
MGI|MGI:1924384 - symbol:Hnrnpa0 "heterogeneous nuclear r...    88  0.00032   2
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein...    81  0.00032   2
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ...    81  0.00032   2
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas...    81  0.00032   2
GENEDB_PFALCIPARUM|PFD0700c - symbol:PFD0700c "RNA bindin...    84  0.00033   2
UNIPROTKB|Q8I1U3 - symbol:PFD0700c "RNA binding protein, ...    84  0.00033   2
RGD|1563684 - symbol:Hnrnpa0 "heterogeneous nuclear ribon...    88  0.00035   2
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp...   100  0.00037   1
UNIPROTKB|F1LXW0 - symbol:F1LXW0 "Uncharacterized protein...    93  0.00039   2
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r...    75  0.00041   2

WARNING:  Descriptions of 14 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2115169 [details] [associations]
            symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
            HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
            EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
            RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
            IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
            EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
            TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
            PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
            Uniprot:Q94AC3
        Length = 379

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 79/115 (68%), Positives = 87/115 (75%)

Query:     1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP----VGR 56
             MPKD  SK HRGIGFITF+SADSVE+LM DTH+LGG+TV VDRATPKEDD  P    V R
Sbjct:   122 MPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKEDDHPPRPPPVAR 181

Query:    57 MSH------------GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR 99
             MS             GGYGAY+AYISAATRYAALGAPTLYD+P +FYGRGE + R
Sbjct:   182 MSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTR 236

 Score = 312 (114.9 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 59/77 (76%), Positives = 66/77 (85%)

Query:    60 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR-IGKKIFVGRLPQEATAEDL 118
             GGYGAY+AYISAATRYAALGAPTLYD+P +FYGRGE + R IG KIFVGRLPQEA+ +DL
Sbjct:   197 GGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDL 256

Query:   119 RRYFSRFGRILDVYVPK 135
             R YF RFG I D Y+PK
Sbjct:   257 RDYFGRFGHIQDAYIPK 273

 Score = 105 (42.0 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMS 58
             KD+ +   RG G++TFASA+  +N +   H LG   + V  ATPKE+  +P  +++
Sbjct:    36 KDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKVATPKEEMRQPAKKVT 91

 Score = 93 (37.8 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query:   103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +IFV R+P   +  D R +F R+G I D+Y+PK +
Sbjct:    92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY 126


>UNIPROTKB|F8VYN5 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
            ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
            SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
            Bgee:F8VYN5 Uniprot:F8VYN5
        Length = 113

 Score = 91 (37.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T+A+ + V+  M    H++ G  V   RA  +ED  RP
Sbjct:     2 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 53

 Score = 71 (30.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query:    95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             E SQR G     KKIFVG + ++     LR YF ++G+I
Sbjct:    48 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 86


>TAIR|locus:2173967 [details] [associations]
            symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
            EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
            UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
            EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
            KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
            PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
        Length = 460

 Score = 92 (37.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG LP   T E+ + YF +FG I DV V
Sbjct:   110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141

 Score = 92 (37.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD------FRPVGR 56
             +D+ +   RG GFI FA     E +++D H + G TV   +A P++D         P+  
Sbjct:    39 RDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHL 98

Query:    57 MS--HGGYG 63
             MS  HGG G
Sbjct:    99 MSPVHGGGG 107


>FB|FBgn0036496 [details] [associations]
            symbol:CG7804 species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P09651 eggNOG:NOG145464
            GeneTree:ENSGT00570000079202 EMBL:AY118452 RefSeq:NP_648764.1
            UniGene:Dm.13628 SMR:Q9VUN2 EnsemblMetazoa:FBtr0075617
            EnsemblMetazoa:FBtr0332815 GeneID:39665 KEGG:dme:Dmel_CG7804
            UCSC:CG7804-RA FlyBase:FBgn0036496 InParanoid:Q9VUN2 OMA:EPKHNNS
            OrthoDB:EOG43XSK6 GenomeRNAi:39665 NextBio:814765 Uniprot:Q9VUN2
        Length = 318

 Score = 128 (50.1 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 29/77 (37%), Positives = 46/77 (59%)

Query:    62 YGAYNAYISAAT-RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
             +G+Y+  +   + R++  G       P S   RG  +Q  GK +FVGR  ++  A+DLR 
Sbjct:   155 FGSYDVQMHVLSKRHSIDGRWCEVKVPAS---RGMGNQEPGK-VFVGRCTEDIEADDLRE 210

Query:   121 YFSRFGRILDVYVPKRF 137
             YFS+FG ++DV++PK F
Sbjct:   211 YFSKFGEVIDVFIPKPF 227


>TAIR|locus:2133862 [details] [associations]
            symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
            metabolic process" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
            RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
            ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
            EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
            TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
            ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
        Length = 455

 Score = 108 (43.1 bits), Expect = 0.00059, P = 0.00059
 Identities = 31/75 (41%), Positives = 38/75 (50%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
             D  ++  RG GFITF S +SV+ ++  T HEL G  V V RA PKE       R    GY
Sbjct:   156 DHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGY 215

Query:    63 GAYNAYISAATRYAA 77
             G  N Y     R +A
Sbjct:   216 G--NNYGVVPNRSSA 228

 Score = 91 (37.1 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 24/69 (34%), Positives = 34/69 (49%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF---RPVGRM-- 57
             +D+ +   RG GFI FA     E +++D H + G TV   +A P++D     R    M  
Sbjct:    48 RDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHL 107

Query:    58 ---SHGGYG 63
                SHGG G
Sbjct:   108 ISPSHGGNG 116

 Score = 86 (35.3 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG LP   T  + + YF +FG I DV V
Sbjct:   122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVV 153


>GENEDB_PFALCIPARUM|PF11_0083 [details] [associations]
            symbol:PF11_0083 "nucleic acid binding factor,
            putative" species:5833 "Plasmodium falciparum" [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE014186 RefSeq:XP_001347758.2 ProteinModelPortal:Q8IIT2
            EnsemblProtists:PF11_0083:mRNA GeneID:810634 KEGG:pfa:PF11_0083
            EuPathDB:PlasmoDB:PF3D7_1107100 HOGENOM:HOG000282219
            ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
        Length = 588

 Score = 100 (40.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query:    94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             G+   + G K+FV +L    T E LR YF +FG I+D+Y+P
Sbjct:   494 GDEWNKRGYKLFVTKLNSATTIEKLRNYFEKFGEIIDIYMP 534

 Score = 73 (30.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 14/54 (25%), Positives = 31/54 (57%)

Query:    10 HRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
             ++G GF++F   +S+  ++ +  H + G  +VVD A+ ++D ++ +  M    Y
Sbjct:   266 NKGFGFVSFEKQESMNKVLKEKLHIICGKEIVVDVASMRDDKYKHLFHMPSENY 319


>UNIPROTKB|Q8IIT2 [details] [associations]
            symbol:PF11_0083 "Nucleic acid binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0005575
            "cellular_component" evidence=ND] [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE014186 RefSeq:XP_001347758.2
            ProteinModelPortal:Q8IIT2 EnsemblProtists:PF11_0083:mRNA
            GeneID:810634 KEGG:pfa:PF11_0083 EuPathDB:PlasmoDB:PF3D7_1107100
            HOGENOM:HOG000282219 ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
        Length = 588

 Score = 100 (40.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query:    94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             G+   + G K+FV +L    T E LR YF +FG I+D+Y+P
Sbjct:   494 GDEWNKRGYKLFVTKLNSATTIEKLRNYFEKFGEIIDIYMP 534

 Score = 73 (30.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 14/54 (25%), Positives = 31/54 (57%)

Query:    10 HRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
             ++G GF++F   +S+  ++ +  H + G  +VVD A+ ++D ++ +  M    Y
Sbjct:   266 NKGFGFVSFEKQESMNKVLKEKLHIICGKEIVVDVASMRDDKYKHLFHMPSENY 319


>TAIR|locus:504955752 [details] [associations]
            symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
            KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
            EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
            ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
            EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
            TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
            ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
        Length = 358

 Score = 92 (37.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK 47
             +D+ +   RG GFITFA    V+ ++ DTH + G  V + R  PK
Sbjct:    52 RDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPK 96

 Score = 77 (32.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query:    94 GESSQRIG-KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
             G  S+ I  KKIFVG +P   T ++L+ +F+++G +++
Sbjct:   100 GNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVE 137

 Score = 52 (23.4 bits), Expect = 0.00051, Sum P(2) = 0.00051
 Identities = 17/43 (39%), Positives = 20/43 (46%)

Query:    55 GRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 97
             G   +GGYG    Y  A   Y + G    Y+  G  YGRG SS
Sbjct:   311 GGEGYGGYGG-PGYGGA---YESGGPGGSYEGAGGPYGRGYSS 349


>TAIR|locus:2077392 [details] [associations]
            symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
            ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
            EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
            OMA:YYIGNTN Uniprot:F4JFN7
        Length = 495

 Score = 105 (42.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
             D  ++  RG GFIT+ S ++VE +++ T HEL G  V V RA PKE
Sbjct:   142 DHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKE 187

 Score = 83 (34.3 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             +KIFVG LP   T  D + YF +FG   DV V
Sbjct:   108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVV 139

 Score = 79 (32.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
             KD+ +   RG GF+ FA     E ++ + H + G  V   +A P++D
Sbjct:    39 KDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDD 85

 Score = 45 (20.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query:   150 SCFSKVSRNLW--TAGCNRFSHTT 171
             S FS V+RNLW    G N  ++ T
Sbjct:   309 SFFSSVTRNLWGNNGGLNYNNNNT 332


>ASPGD|ASPL0000063757 [details] [associations]
            symbol:AN10941 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
            EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
            Uniprot:C8VBB9
        Length = 559

 Score = 89 (36.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query:   103 KIFVGRLPQEATAEDLRRYFSRFGRILD 130
             KIFVG + QEAT +D +++F +FGR++D
Sbjct:   195 KIFVGGVSQEATEQDFKQFFMQFGRVID 222

 Score = 84 (34.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             +D  +   RG GF+TF    +V  +MV  H L G  +   RA P+ D+     ++  GG
Sbjct:   143 RDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPR-DEQEKTSKIFVGG 200


>TAIR|locus:2129590 [details] [associations]
            symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
            GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
            HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
            RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
            SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
            PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
            KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
            PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
            Uniprot:Q8W034
        Length = 411

 Score = 121 (47.7 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR-MSHGG 61
             DQ +   RG GF++F S D+V++++  T H+L G  V V RA PK+ +    GR M  GG
Sbjct:   144 DQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGG 203

Query:    62 YGAYNAY 68
              G Y  Y
Sbjct:   204 SGGYQGY 210


>UNIPROTKB|F1M6U1 [details] [associations]
            symbol:F1M6U1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
            Uniprot:F1M6U1
        Length = 252

 Score = 86 (35.3 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T+ + + V+  M    H++ G  V   RA  +ED  RP
Sbjct:    40 RDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 91

 Score = 74 (31.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query:    95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             E SQR G     KKIFVG + ++     LR YF ++G+I
Sbjct:    86 EDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKI 124


>POMBASE|SPBC660.15 [details] [associations]
            symbol:SPBC660.15 "mRNA cleavage factor complex subunit
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
            complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
            evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
            EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
            eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
            OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
            ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
            EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
            OMA:CHKANDG NextBio:20802263 Uniprot:O94432
        Length = 474

 Score = 85 (35.0 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query:   103 KIFVGRLPQEATAEDLRRYFSRFGRILD 130
             K+FVG +P + T E+ R +F++FGR+LD
Sbjct:   248 KMFVGGVPGDCTEEEFRNFFNQFGRVLD 275

 Score = 83 (34.3 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             +D  +   RG GF+TF +   V  +M   H L G  +   RA P+E+  +   +M  GG
Sbjct:   196 RDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEK-TAKMFVGG 253


>RGD|1310906 [details] [associations]
            symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
            evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
            [GO:0034976 "response to endoplasmic reticulum stress"
            evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
            [GO:0043922 "negative regulation by host of viral transcription"
            evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
            GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
            EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
            Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
            Uniprot:I6L9G6
        Length = 285

 Score = 108 (43.1 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
 Identities = 16/36 (44%), Positives = 30/36 (83%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ TAE+L+++F ++G ++DV++PK F
Sbjct:   191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226

 Score = 44 (20.5 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170


>UNIPROTKB|D4A9S4 [details] [associations]
            symbol:Tardbp "Protein Tardbp" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1310906 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00197538 ProteinModelPortal:D4A9S4
            Ensembl:ENSRNOT00000017922 ArrayExpress:D4A9S4 Uniprot:D4A9S4
        Length = 288

 Score = 108 (43.1 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
 Identities = 16/36 (44%), Positives = 30/36 (83%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ TAE+L+++F ++G ++DV++PK F
Sbjct:   191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226

 Score = 44 (20.5 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170


>UNIPROTKB|Q2KJ45 [details] [associations]
            symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
            HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
            GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
            UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
            STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
            Uniprot:Q2KJ45
        Length = 298

 Score = 109 (43.4 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
 Identities = 16/36 (44%), Positives = 30/36 (83%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ TA++LR++F ++G ++DV++PK F
Sbjct:   191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226

 Score = 43 (20.2 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170


>UNIPROTKB|D4A491 [details] [associations]
            symbol:D4A491 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            IPI:IPI00560785 ProteinModelPortal:D4A491
            Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
        Length = 239

 Score = 92 (37.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T+A+ + V+  M    H++ G  V   RA  +ED  RP
Sbjct:    40 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVNGRVVEPKRAVSREDSQRP 91

 Score = 62 (26.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGR 127
             KKIFVG + ++     LR YF ++G+
Sbjct:    98 KKIFVGGIKEDTEEHHLRDYFGQYGK 123


>UNIPROTKB|B1AKP7 [details] [associations]
            symbol:TARDBP "TAR DNA-binding protein 43" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
            HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
            HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
            Ensembl:ENST00000315091 Uniprot:B1AKP7
        Length = 295

 Score = 107 (42.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 16/36 (44%), Positives = 29/36 (80%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ T ++LR +FS++G ++DV++PK F
Sbjct:   191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226

 Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170


>UNIPROTKB|B4DJ45 [details] [associations]
            symbol:TARDBP "cDNA FLJ58188, highly similar to TAR
            DNA-binding protein 43" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 EMBL:AL109811
            HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
            HGNC:HGNC:11571 ChiTaRS:TARDBP EMBL:AK295920 IPI:IPI00910355
            SMR:B4DJ45 STRING:B4DJ45 Ensembl:ENST00000439080 UCSC:uc010oap.2
            Uniprot:B4DJ45
        Length = 298

 Score = 107 (42.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 16/36 (44%), Positives = 29/36 (80%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ T ++LR +FS++G ++DV++PK F
Sbjct:    75 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 110

 Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:    21 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 54


>UNIPROTKB|G3V162 [details] [associations]
            symbol:TARDBP "TAR DNA-binding protein 43" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
            ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
            Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
            Uniprot:G3V162
        Length = 298

 Score = 107 (42.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 16/36 (44%), Positives = 29/36 (80%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ T ++LR +FS++G ++DV++PK F
Sbjct:   191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226

 Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170


>ZFIN|ZDB-GENE-031030-1 [details] [associations]
            symbol:tardbpl "TAR DNA binding protein, like"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-031030-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q14103 HOGENOM:HOG000254792
            HOVERGEN:HBG058671 GeneTree:ENSGT00570000079202 OMA:PSISRIF
            EMBL:CR381616 EMBL:BC044405 IPI:IPI00504192 RefSeq:NP_938178.1
            UniGene:Dr.33664 SMR:Q803N5 STRING:Q803N5
            Ensembl:ENSDART00000027255 GeneID:386630 KEGG:dre:386630 CTD:386630
            InParanoid:Q803N5 NextBio:20813960 Uniprot:Q803N5
        Length = 303

 Score = 107 (42.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 16/36 (44%), Positives = 29/36 (80%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ TA++LR++F ++G + DV++PK F
Sbjct:   197 RKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPF 232

 Score = 44 (20.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             +D  S   +G GF+ F   ++   +M   H + G
Sbjct:   138 RDAKSGNSKGFGFVRFTDYETQIKVMSQRHMIDG 171


>DICTYBASE|DDB_G0292422 [details] [associations]
            symbol:DDB_G0292422 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
            eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
            EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
            InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
        Length = 687

 Score = 87 (35.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
             ++ SK+ RG GF+TF     ++ +++  H + G  V + RA PKE+
Sbjct:   142 EKASKS-RGFGFVTFVDPSVIDEVILINHSIEGKNVEIRRAIPKEE 186

 Score = 80 (33.2 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             +K+FVG LP+  T++D   YFS FG I
Sbjct:   194 QKLFVGGLPKHITSDDFNNYFSEFGEI 220


>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
            symbol:tardbp "TAR DNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
            extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
            eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
            OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
            EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
            SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
            KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
        Length = 412

 Score = 109 (43.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
 Identities = 20/51 (39%), Positives = 34/51 (66%)

Query:    87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             P S  G  E  +   +K+FVGR  ++ TA++LR++F ++G + DV++PK F
Sbjct:   184 PNSKQGIDEPMR--SRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPF 232

 Score = 44 (20.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query:    11 RGIGFITFASADSVENLMVDTHELGG 36
             +G GF+ F   ++   +M   H + G
Sbjct:   151 KGFGFVRFGDWETQSKVMTQRHMIDG 176


>FB|FBgn0260943 [details] [associations]
            symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
            GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
            RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
            UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
            DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
            EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
            UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
            OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
            Uniprot:Q9VVE5
        Length = 369

 Score = 83 (34.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47
             KD  ++  RG GF+TF+  +SV+ ++   THEL G  V    A P+
Sbjct:    62 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPR 107

 Score = 77 (32.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
             KKIFVG L    T ED++ YF +FG I D
Sbjct:   118 KKIFVGGLSAPTTLEDVKSYFEQFGPIED 146


>UNIPROTKB|I3L7S7 [details] [associations]
            symbol:LOC100621383 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
            Uniprot:I3L7S7
        Length = 275

 Score = 105 (42.0 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
 Identities = 15/36 (41%), Positives = 30/36 (83%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ TA++L+++F ++G ++DV++PK F
Sbjct:   124 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKPF 159

 Score = 43 (20.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:    70 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 103


>UNIPROTKB|G3MX91 [details] [associations]
            symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043922 "negative regulation by host of viral
            transcription" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
            GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
            GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
            RefSeq:NP_001039950.2 UniGene:Bt.106561 Ensembl:ENSBTAT00000065252
            GeneID:540632 KEGG:bta:540632 NextBio:20878740 Uniprot:G3MX91
        Length = 414

 Score = 109 (43.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 16/36 (44%), Positives = 30/36 (83%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ TA++LR++F ++G ++DV++PK F
Sbjct:   191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226

 Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170


>UNIPROTKB|E2QS43 [details] [associations]
            symbol:TARDBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043922 "negative regulation by host of viral
            transcription" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
            GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
            GeneTree:ENSGT00570000079202 EMBL:AAEX03001938 RefSeq:XP_535409.3
            Ensembl:ENSCAFT00000026536 GeneID:478234 KEGG:cfa:478234
            NextBio:20853591 Uniprot:E2QS43
        Length = 414

 Score = 109 (43.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 16/36 (44%), Positives = 30/36 (83%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ TA++LR++F ++G ++DV++PK F
Sbjct:   191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226

 Score = 43 (20.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   137 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170


>UNIPROTKB|F1M5N1 [details] [associations]
            symbol:F1M5N1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
            ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
        Length = 207

 Score = 86 (35.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T+A+ + V+  M    H++ G  V   RA   ED  RP
Sbjct:    43 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSIEDSQRP 94

 Score = 64 (27.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query:    95 ESSQRIGK----KIFVGRLPQEATAEDLRRYFSRFGR 127
             E SQR G     KIFVG + ++     LR YF ++G+
Sbjct:    89 EDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYGK 125


>UNIPROTKB|F1PA19 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
            Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
        Length = 264

 Score = 86 (35.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF  FG I  + +P
Sbjct:    84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 116

 Score = 68 (29.0 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  A SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:    34 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 90


>UNIPROTKB|Q3ZC44 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
            EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
            RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
            Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
            NextBio:20870841 Uniprot:Q3ZC44
        Length = 285

 Score = 86 (35.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF  FG I  + +P
Sbjct:   154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 186

 Score = 69 (29.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  A SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:   104 DPNTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160


>ZFIN|ZDB-GENE-030826-25 [details] [associations]
            symbol:msi2a "musashi homolog 2a (Drosophila)"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
            EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
            RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
            Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
            GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
            OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
        Length = 388

 Score = 81 (33.6 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGR 56
             +D  +K  RG GFITFA   SV+ ++   H EL   T+    A P+    + V R
Sbjct:    54 RDPTTKRSRGFGFITFADVSSVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTR 108

 Score = 79 (32.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
             KKIFVG L      ED+++YF +FG++ D
Sbjct:   110 KKIFVGGLSASTVVEDVKQYFEQFGKVED 138


>MGI|MGI:2387629 [details] [associations]
            symbol:Tardbp "TAR DNA binding protein" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
            evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISO] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=ISO] [GO:0043922 "negative regulation by host of
            viral transcription" evidence=ISO] [GO:0070935 "3'-UTR-mediated
            mRNA stabilization" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:2387629 GO:GO:0005634 GO:GO:0006355 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
            GO:GO:0003730 GO:GO:0003690 GO:GO:0043922 GO:GO:0070935
            UniGene:Mm.378962 CTD:23435 eggNOG:NOG145464 HOGENOM:HOG000254792
            HOVERGEN:HBG058671 OrthoDB:EOG447FTT OMA:QFFSQYG EMBL:AK133207
            EMBL:AK153803 EMBL:BC012873 EMBL:BC025544 EMBL:BC027772
            EMBL:BC031126 EMBL:BC033475 IPI:IPI00121758 RefSeq:NP_663531.1
            UniGene:Mm.22453 PDB:3D2W PDBsum:3D2W ProteinModelPortal:Q921F2
            SMR:Q921F2 STRING:Q921F2 PhosphoSite:Q921F2
            REPRODUCTION-2DPAGE:Q921F2 PaxDb:Q921F2 PRIDE:Q921F2
            Ensembl:ENSMUST00000084125 GeneID:230908 KEGG:mmu:230908
            GeneTree:ENSGT00570000079202 InParanoid:Q3V0E7
            EvolutionaryTrace:Q921F2 NextBio:380280 Bgee:Q921F2
            CleanEx:MM_TARDBP Genevestigator:Q921F2
            GermOnline:ENSMUSG00000041459 Uniprot:Q921F2
        Length = 414

 Score = 108 (43.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 16/36 (44%), Positives = 30/36 (83%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ TAE+L+++F ++G ++DV++PK F
Sbjct:   191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226

 Score = 44 (20.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170


>UNIPROTKB|F1NIB4 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
            EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
            Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
        Length = 212

 Score = 86 (35.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF  FG I  + +P
Sbjct:    84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 116

 Score = 64 (27.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F    SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:    34 DPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKD--PVKKIFVGG 90


>UNIPROTKB|D6R9P3 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
            ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
            SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
            Uniprot:D6R9P3
        Length = 280

 Score = 86 (35.3 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF  FG I  + +P
Sbjct:   154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 186

 Score = 68 (29.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  A SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:   104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160


>MGI|MGI:1330294 [details] [associations]
            symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
            replication origin binding" evidence=ISO] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=ISO] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
            GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
            GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
            InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
            ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
            IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
            ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
            MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
            PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
            NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
            GermOnline:ENSMUSG00000020358 Uniprot:Q99020
        Length = 285

 Score = 87 (35.7 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF +FG I  + +P
Sbjct:   159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELP 191

 Score = 67 (28.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  + SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:   109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 165


>UNIPROTKB|Q9QX80 [details] [associations]
            symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
            InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
            EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
            PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
            RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
            STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
            GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
            Genevestigator:Q9QX80 Uniprot:Q9QX80
        Length = 285

 Score = 87 (35.7 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF +FG I  + +P
Sbjct:   159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELP 191

 Score = 67 (28.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  + SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:   109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 165


>UNIPROTKB|D6RD18 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
            ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
            SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
            Uniprot:D6RD18
        Length = 283

 Score = 86 (35.3 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF  FG I  + +P
Sbjct:   154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 186

 Score = 68 (29.0 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  A SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:   104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160


>RGD|69255 [details] [associations]
            symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
           species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
           mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
           evidence=IDA] [GO:0003688 "DNA replication origin binding"
           evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
           "cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
           evidence=ISO] [GO:0045892 "negative regulation of transcription,
           DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
           transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
           evidence=ISO] [GO:0003700 "sequence-specific DNA binding
           transcription factor activity" evidence=ISO] [GO:0043565
           "sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
           InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
           RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
           GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
           Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
           UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
           ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
           STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
           Uniprot:Q9Z0U8
        Length = 298

 Score = 87 (35.7 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF +FG I  + +P
Sbjct:   172 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELP 204

 Score = 67 (28.6 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  + SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:   122 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 178


>UNIPROTKB|Q13148 [details] [associations]
            symbol:TARDBP "TAR DNA-binding protein 43" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
            death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=TAS] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
            "negative regulation by host of viral transcription" evidence=IDA]
            [GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
            "RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
            Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
            GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
            OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
            EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
            EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
            IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
            UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
            ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
            STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
            PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
            KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
            HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
            neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
            PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
            GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
            CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
            Uniprot:Q13148
        Length = 414

 Score = 107 (42.7 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
 Identities = 16/36 (44%), Positives = 29/36 (80%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ T ++LR +FS++G ++DV++PK F
Sbjct:   191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226

 Score = 44 (20.5 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   137 KDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170


>UNIPROTKB|E2R5N6 [details] [associations]
            symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
            Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
        Length = 322

 Score = 87 (35.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T+ + + V+  M    H++ G  V   R + KED  RP
Sbjct:    47 RDPNTKRSRGFGFVTYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRP 98

 Score = 67 (28.6 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query:    95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             E SQR G     KKIF G + ++     LR YF ++G+I
Sbjct:    93 EDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKI 131


>UNIPROTKB|F1NBY1 [details] [associations]
            symbol:TARDBP "TAR DNA-binding protein 43" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
            "negative regulation by host of viral transcription" evidence=IEA]
            [GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
            IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
            EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
            Uniprot:F1NBY1
        Length = 414

 Score = 107 (42.7 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
 Identities = 15/36 (41%), Positives = 31/36 (86%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ TA++L+++F+++G ++DV++PK F
Sbjct:   191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPF 226

 Score = 43 (20.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   137 KDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDG 170


>UNIPROTKB|Q5ZLN5 [details] [associations]
            symbol:TARDBP "TAR DNA-binding protein 43" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
            EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
            UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
            STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
            eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
            InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
        Length = 414

 Score = 107 (42.7 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
 Identities = 15/36 (41%), Positives = 31/36 (86%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ TA++L+++F+++G ++DV++PK F
Sbjct:   191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPF 226

 Score = 43 (20.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   137 KDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDG 170


>UNIPROTKB|E9PTS0 [details] [associations]
            symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
            Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
        Length = 331

 Score = 87 (35.7 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF +FG I  + +P
Sbjct:   158 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELP 190

 Score = 67 (28.6 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  + SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:   108 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 164


>UNIPROTKB|D6RBZ0 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
            ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
            SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
            Uniprot:D6RBZ0
        Length = 327

 Score = 86 (35.3 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF  FG I  + +P
Sbjct:   154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 186

 Score = 68 (29.0 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  A SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:   104 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 160


>UNIPROTKB|Q9QX81 [details] [associations]
            symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
            EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
            PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
            GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
            RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
            Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
            Uniprot:Q9QX81
        Length = 332

 Score = 87 (35.7 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF +FG I  + +P
Sbjct:   159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELP 191

 Score = 67 (28.6 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  + SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:   109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 165


>FB|FBgn0025790 [details] [associations]
            symbol:TBPH "TAR DNA-binding protein-43 homolog" species:7227
            "Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0048812 "neuron projection
            morphogenesis" evidence=IMP] [GO:0008344 "adult locomotory
            behavior" evidence=IMP] [GO:0007528 "neuromuscular junction
            development" evidence=IMP] [GO:0007417 "central nervous system
            development" evidence=IMP] [GO:0045886 "negative regulation of
            synaptic growth at neuromuscular junction" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0007528 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0008344 GO:GO:0045886 EMBL:AB010261
            HSSP:Q61474 eggNOG:NOG145464 EMBL:AB019705 EMBL:AB019706 SMR:O97468
            IntAct:O97468 STRING:O97468 UCSC:CG10327-RC FlyBase:FBgn0025790
            InParanoid:O97468 OrthoDB:EOG4QNKC2 Uniprot:O97468
        Length = 531

 Score = 116 (45.9 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 27/77 (35%), Positives = 44/77 (57%)

Query:    62 YGAYNAYISAAT-RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
             +G+Y+A +   T R+   G       P S   +G   Q +  K+FVGR  ++  ++DLR 
Sbjct:   155 FGSYDAQMRVLTNRHLIDGRWCEVKVPNS---KGMGHQ-VPCKVFVGRCTEDINSDDLRE 210

Query:   121 YFSRFGRILDVYVPKRF 137
             YFS+FG + DV++P+ F
Sbjct:   211 YFSKFGEVTDVFIPRPF 227


>UNIPROTKB|F1P5I0 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
        Length = 288

 Score = 83 (34.3 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    42 RDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP 93

 Score = 70 (29.7 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   100 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEV 131


>UNIPROTKB|F1Q2T4 [details] [associations]
            symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
            Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
        Length = 290

 Score = 84 (34.6 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T+A+   V+     +H++ G  V   RA  +ED  RP
Sbjct:    47 RDPNTKHSRGFGFVTYATVKEVD--AARSHKVDGRVVEPKRAVSREDSQRP 95

 Score = 68 (29.0 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query:    95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             E SQR G     +KIFVG + ++     LR YF ++G+I
Sbjct:    90 EDSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQYGKI 128


>UNIPROTKB|F1NIB2 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
            EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
            Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
        Length = 263

 Score = 86 (35.3 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF  FG I  + +P
Sbjct:    84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 116

 Score = 64 (27.6 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F    SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:    34 DPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKD--PVKKIFVGG 90


>UNIPROTKB|F1NBB6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
        Length = 310

 Score = 83 (34.3 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    54 RDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP 105

 Score = 70 (29.7 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   112 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEV 143


>TAIR|locus:2037633 [details] [associations]
            symbol:RBP1 "RNA-binding protein 1" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0003727 "single-stranded RNA binding"
            evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
            GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
            EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
            IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
            ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
            PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
            KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
            PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
            Uniprot:Q9C652
        Length = 360

 Score = 89 (36.4 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
 Identities = 18/32 (56%), Positives = 20/32 (62%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG L    T E+ + YF RFGR  DV V
Sbjct:   120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVV 151

 Score = 64 (27.6 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
             K++ +   RG GF+ FA+   V   + DTH + G  V V +A  K +
Sbjct:    39 KEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHE 85


>FB|FBgn0004237 [details] [associations]
            symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
            87F" species:7227 "Drosophila melanogaster" [GO:0030529
            "ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
            "polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IMP] [GO:0001745 "compound eye morphogenesis"
            evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
            GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
            GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
            GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
            GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
            EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
            PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
            RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
            SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
            PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
            EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
            CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
            OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
            NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
            Uniprot:P48810
        Length = 385

 Score = 84 (34.6 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKED 49
             KD  +K  RG GFIT++ +  ++N      H++ G TV   RA P+++
Sbjct:    57 KDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQE 104

 Score = 71 (30.1 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KK+FVG L  +   E LR YF  FG+I+ V +
Sbjct:   115 KKLFVGGLRDDHDEECLREYFKDFGQIVSVNI 146


>UNIPROTKB|F1PGQ0 [details] [associations]
            symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
            Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
        Length = 318

 Score = 82 (33.9 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG+GF+ +A+ + V+  M     + G  V   RA  +ED  RP
Sbjct:    47 RDPNTKRSRGVGFLMYATVEEVDAAMNARPHVDGRVVEPKRAVSREDSQRP 97

 Score = 71 (30.1 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query:    95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             E SQR G     KKIFVG + ++     LR YF ++G+I
Sbjct:    92 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 130


>ZFIN|ZDB-GENE-050320-86 [details] [associations]
            symbol:msi1 "musashi homolog 1 (Drosophila)"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
            nervous system development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
        Length = 349

 Score = 81 (33.6 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
             KKIFVG L    T ED+++YF +FG++ D
Sbjct:   109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDD 137

 Score = 73 (30.8 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
             +D  +K  RG GF+TF     V+ ++  T HEL   T+    A P+
Sbjct:    53 RDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPR 98


>TAIR|locus:2050992 [details] [associations]
            symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
            ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
            IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
            ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
            PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
            KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
            PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
            Uniprot:O22791
        Length = 404

 Score = 107 (42.7 bits), Expect = 0.00065, P = 0.00065
 Identities = 29/65 (44%), Positives = 38/65 (58%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
             DQ ++  RG GF++F S DSV+ ++  T H+L G  V V RA PK  D  P G  S GG 
Sbjct:   144 DQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPK--DANP-GIASGGGR 200

Query:    63 GAYNA 67
             G+  A
Sbjct:   201 GSGGA 205

 Score = 78 (32.5 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG LP   T+++ R YF  +G + D  +
Sbjct:   110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVI 141

 Score = 78 (32.5 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
 Identities = 19/70 (27%), Positives = 34/70 (48%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
             +++ +   RG GF+ F+    ++ ++ D H +    V V RA  +E+   P GR   G +
Sbjct:    39 REKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAMSREEQ-SPAGRS--GTF 95

Query:    63 GAYNAYISAA 72
              A   + S A
Sbjct:    96 NASRNFDSGA 105


>ZFIN|ZDB-GENE-070212-1 [details] [associations]
            symbol:dazap1 "DAZ associated protein 1" species:7955
            "Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
            EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
            Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
        Length = 407

 Score = 113 (44.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 36/115 (31%), Positives = 54/115 (46%)

Query:     4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
             D   +  RG GFITF +  SV+  + +  H++ G  V V +A P++      G++    +
Sbjct:   147 DAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEPRDSKAPAPGQLGANQW 206

Query:    63 GAYNAYISAATRYAALGAPTL---YDHPGSFYGRGESSQRIGKKIFVGR-LPQEA 113
             G   A ISAA  +AA  APT    Y   G +   G+     G  +  GR  P +A
Sbjct:   207 GP-RAIISAANGWAAQPAPTWQQSYGPQGVWVSTGQPLAGYGPPLPAGRGAPAQA 260


>UNIPROTKB|I3LNA4 [details] [associations]
            symbol:LOC100621383 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00570000079202 OMA:PSISRIF EMBL:CU694468
            Ensembl:ENSSSCT00000022360 Uniprot:I3LNA4
        Length = 413

 Score = 105 (42.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 15/36 (41%), Positives = 30/36 (83%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
             +K+FVGR  ++ TA++L+++F ++G ++DV++PK F
Sbjct:   190 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKPF 225

 Score = 43 (20.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG 36
             KD  +   +G GF+ F   ++   +M   H + G
Sbjct:   136 KDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 169


>UNIPROTKB|Q9XSY6 [details] [associations]
            symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
            "Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
            Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
        Length = 279

 Score = 86 (35.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  EAT E +R YF  FG I  + +P
Sbjct:   148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELP 180

 Score = 63 (27.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query:    11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             +G GFI F  A SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:   105 KGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 154


>UNIPROTKB|F1SCL3 [details] [associations]
            symbol:LOC100522980 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
            RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
            KEGG:ssc:100522980 Uniprot:F1SCL3
        Length = 354

 Score = 82 (33.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
             +D  S+  RG GF+ F+S   V+  M    H + G  V   R  P+E+  +P
Sbjct:    54 RDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVASKRVVPREESGKP 105

 Score = 71 (30.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             KK+FVG + ++ T   LR YF R+G I
Sbjct:   112 KKLFVGGIKEDTTERHLRDYFERYGTI 138


>UNIPROTKB|F1SCM6 [details] [associations]
            symbol:LOC100522063 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
            RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
            KEGG:ssc:100522063 Uniprot:F1SCM6
        Length = 354

 Score = 82 (33.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
             +D  S+  RG GF+ F+S   V+  M    H + G  V   R  P+E+  +P
Sbjct:    54 RDPSSQRSRGFGFVIFSSVAEVDAAMAARPHSIDGRVVASKRVVPREESGKP 105

 Score = 71 (30.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             KK+FVG + ++ T   LR YF R+G I
Sbjct:   112 KKLFVGGIKEDTTERHLRDYFERYGTI 138


>FB|FBgn0001215 [details] [associations]
            symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
            98DE" species:7227 "Drosophila melanogaster" [GO:0030529
            "ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
            "mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0001745 "compound eye morphogenesis"
            evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
            puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
            splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0045727 "positive regulation of translation" evidence=IMP]
            [GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
            stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
            binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
            GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
            GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
            GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
            OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
            EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
            RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
            RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
            UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
            IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
            PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
            GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
            InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
            GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
            Uniprot:P07909
        Length = 365

 Score = 79 (32.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
             KD  +K  RG GFIT++ +  ++       H++ G  V   RA P++D
Sbjct:    64 KDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQD 111

 Score = 75 (31.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KK+FVG L  +   + +R YF  FG I+D+ +
Sbjct:   122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINI 153


>UNIPROTKB|F1M460 [details] [associations]
            symbol:F1M460 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
            ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
            ArrayExpress:F1M460 Uniprot:F1M460
        Length = 224

 Score = 79 (32.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  +    H++ G  V   RA  +ED  +P
Sbjct:    41 RDPQTKRSRGFGFVTYSCVEEVDAAVCARPHKVDGRVVEPKRAVSREDSVKP 92

 Score = 68 (29.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:    99 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEV 130


>RGD|2321074 [details] [associations]
            symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
            PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
            ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
        Length = 320

 Score = 83 (34.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119

 Score = 68 (29.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEV 157


>WB|WBGene00019249 [details] [associations]
            symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
            UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
            EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
            KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
            Uniprot:H2L0D0
        Length = 336

 Score = 108 (43.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 24/47 (51%), Positives = 30/47 (63%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
             +D  +K  RG GF+TFAS  S E+ M D  H+LGG TV   RA P+E
Sbjct:   103 RDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPRE 149

 Score = 35 (17.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query:   114 TAEDLRRYFSRFGRILDVYV 133
             + + LR YF  FG +  V +
Sbjct:   181 SVDSLRVYFETFGTLDQVEI 200


>UNIPROTKB|E7EWI9 [details] [associations]
            symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
            ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
            SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
            Uniprot:E7EWI9
        Length = 322

 Score = 83 (34.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    46 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 97

 Score = 68 (29.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   104 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEV 135


>UNIPROTKB|E1BZE6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00812068 ProteinModelPortal:E1BZE6
            Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
        Length = 380

 Score = 83 (34.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    66 RDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKP 117

 Score = 70 (29.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   124 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEV 155


>FB|FBgn0011666 [details] [associations]
            symbol:msi "musashi" species:7227 "Drosophila melanogaster"
            [GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
            development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
            [GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
            processing" evidence=ISS] [GO:0017148 "negative regulation of
            translation" evidence=IMP;TAS] [GO:0006417 "regulation of
            translation" evidence=TAS] [GO:0045182 "translation regulator
            activity" evidence=TAS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
            [GO:0000900 "translation repressor activity, nucleic acid binding"
            evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
            [GO:0042078 "germ-line stem cell division" evidence=IMP]
            [GO:0071456 "cellular response to hypoxia" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
            GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
            GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
            FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
            RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
            STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
            EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
            UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
            GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
        Length = 634

 Score = 80 (33.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 14/27 (51%), Positives = 22/27 (81%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             KKIFVG + Q+ +AE+++ YFS+FG +
Sbjct:   291 KKIFVGGVSQDTSAEEVKAYFSQFGPV 317

 Score = 79 (32.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 19/46 (41%), Positives = 25/46 (54%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47
             KD  ++  RG GFITF    +VE ++ V  H L G  +    ATPK
Sbjct:   236 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPK 281


>FB|FBgn0004838 [details] [associations]
            symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
            27C" species:7227 "Drosophila melanogaster" [GO:0030529
            "ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
            "negative regulation of oskar mRNA translation" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
            "regulation of pole plasm oskar mRNA localization" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
            plasm oskar mRNA localization" evidence=IMP] [GO:0048024
            "regulation of mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0007298 "border follicle cell migration" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=IDA]
            [GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
            [GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
            EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
            GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
            GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
            eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
            EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
            PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
            RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
            RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
            UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
            MINT:MINT-939547 STRING:P48809 PaxDb:P48809
            EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
            EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
            EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
            EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
            KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
            InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
            ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
            GermOnline:CG10377 Uniprot:P48809
        Length = 421

 Score = 87 (35.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query:   101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             G K+F+G LP   T  DLR +F+R+G++ +V +
Sbjct:    95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVI 127

 Score = 66 (28.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             K+  S   RG GF+TFA   +V +++ +  H L G T+  D   PK  + R + +   GG
Sbjct:    40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI--D---PKPCNPRTLQKPKKGG 94

Query:    62 YGAYNAYI 69
                Y  ++
Sbjct:    95 --GYKVFL 100


>UNIPROTKB|E9PLB0 [details] [associations]
            symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
            ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
            ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
        Length = 143

 Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
 Identities = 15/40 (37%), Positives = 29/40 (72%)

Query:   103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
             K+F+G LP+EAT +++R  F ++G++L+  + K + F H+
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 42


>RGD|1306891 [details] [associations]
            symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0002190 "cap-independent
            translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
            translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
            [GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
            "cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
            speck" evidence=ISO] [GO:0017148 "negative regulation of
            translation" evidence=ISO] [GO:0032055 "negative regulation of
            translation in response to stress" evidence=ISO] [GO:0032922
            "circadian regulation of gene expression" evidence=ISO] [GO:0033554
            "cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
            binding" evidence=ISO] [GO:0035278 "negative regulation of
            translation involved in gene silencing by miRNA" evidence=ISO]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            [GO:0045947 "negative regulation of translational initiation"
            evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
            transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
            cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
            MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
            evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
            binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
            EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
            IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
            InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
        Length = 143

 Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
 Identities = 15/40 (37%), Positives = 29/40 (72%)

Query:   103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
             K+F+G LP+EAT +++R  F ++G++L+  + K + F H+
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 42


>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
            symbol:zgc:77052 "zgc:77052" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
            Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
            IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
            STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
            KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
        Length = 309

 Score = 82 (33.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  E T E +R YF  FG I  + +P
Sbjct:   129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELP 161

 Score = 68 (29.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  +DSV+ ++    H L G  +   RA   + +  PV ++  GG
Sbjct:    79 DSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRAMAIKKE--PVKKIFVGG 135


>UNIPROTKB|F1LNG4 [details] [associations]
            symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
            Uniprot:F1LNG4
        Length = 357

 Score = 83 (34.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    46 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 97

 Score = 68 (29.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   104 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEV 135


>UNIPROTKB|I3LPG0 [details] [associations]
            symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
            "polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
            EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
        Length = 332

 Score = 82 (33.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
             KKIFVG L    T ED+++YF +FG++ D
Sbjct:    76 KKIFVGGLSVNTTVEDVKQYFEQFGKVDD 104

 Score = 68 (29.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
             +D  +K  RG GF+TF     V+ ++  + HEL   T+    A P+    + V R
Sbjct:    20 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 74


>DICTYBASE|DDB_G0287335 [details] [associations]
            symbol:DDB_G0287335 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
            ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
            GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
            InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
            Uniprot:Q54KH9
        Length = 91

 Score = 92 (37.4 bits), Expect = 0.00018, P = 0.00018
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD 50
             D+ +K  RG GF+TF  +DSV+  M   +E+GG  +VV  A  K ++
Sbjct:    37 DKVTKRSRGFGFVTFDQSDSVQKAMEAENEMGGRKLVVSFAQEKTEN 83


>UNIPROTKB|F1MS42 [details] [associations]
            symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
            "polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
            EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
            Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
        Length = 342

 Score = 82 (33.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
             KKIFVG L    T ED+++YF +FG++ D
Sbjct:    89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDD 117

 Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
             +D  +K  RG GF+TF     V+ ++  + HEL   T+    A P+    + V R
Sbjct:    33 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 87


>UNIPROTKB|E2RFV7 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
            EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
            Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
            Uniprot:E2RFV7
        Length = 378

 Score = 83 (34.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119

 Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEV 157


>UNIPROTKB|P51991 [details] [associations]
            symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
            "ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
            GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
            EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
            HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
            IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
            UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
            IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
            DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
            Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
            KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
            HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
            InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
            GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
            ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
            Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
        Length = 378

 Score = 83 (34.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119

 Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEV 157


>UNIPROTKB|F2Z5B4 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
            RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
            Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
            Uniprot:F2Z5B4
        Length = 379

 Score = 83 (34.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119

 Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEV 157


>RGD|727807 [details] [associations]
            symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
            "ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
            projection" evidence=IDA] [GO:0051028 "mRNA transport"
            evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
            evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
            GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
            EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
            IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
            RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
            ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
            PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
            UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
            ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
            GO:GO:0051033 Uniprot:Q6URK4
        Length = 379

 Score = 83 (34.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119

 Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEV 157


>UNIPROTKB|E1BEG2 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
            IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
        Length = 380

 Score = 83 (34.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119

 Score = 68 (29.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEV 157


>UNIPROTKB|Q9LEB3 [details] [associations]
            symbol:RBP47 "Polyadenylate-binding protein RBP47"
            species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
            evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
            "cellular response to heat" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
            EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
        Length = 428

 Score = 111 (44.1 bits), Expect = 0.00021, P = 0.00021
 Identities = 47/155 (30%), Positives = 67/155 (43%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYG 63
             D  +   +G GF+ F   D  E     T E+ G  V       +     P    +H  Y 
Sbjct:   212 DANTGHSKGYGFVRFG--DESERSRAMT-EMNG--VYCSSRAMRIGVATPKKPSAHEQYS 266

Query:    64 AYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFS 123
             +    +S    YA+ GA T   H GS    G+SS      IFVG L  E T E+LR+ F+
Sbjct:   267 SQAVILSGG--YASNGAAT---H-GS-QSDGDSSNTT---IFVGGLDSEVTDEELRQSFN 316

Query:   124 RFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
             +FG ++ V +P  K   F     RS ++    K+S
Sbjct:   317 QFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLS 351


>UNIPROTKB|E9PM61 [details] [associations]
            symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
            ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
            ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
        Length = 147

 Score = 100 (40.3 bits), Expect = 0.00022, P = 0.00022
 Identities = 15/40 (37%), Positives = 29/40 (72%)

Query:   103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
             K+F+G LP+EAT +++R  F ++G++L+  + K + F H+
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 42


>UNIPROTKB|O43347 [details] [associations]
            symbol:MSI1 "RNA-binding protein Musashi homolog 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
            "poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
            hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
            differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=TAS] [GO:0007399 "nervous system development"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
            EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
            UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
            IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
            PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
            GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
            GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
            neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
            OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
            Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
            GermOnline:ENSG00000135097 Uniprot:O43347
        Length = 362

 Score = 82 (33.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
             KKIFVG L    T ED+++YF +FG++ D
Sbjct:   109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137

 Score = 68 (29.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
             +D  +K  RG GF+TF     V+ ++  + HEL   T+    A P+    + V R
Sbjct:    53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107


>UNIPROTKB|D4A6A2 [details] [associations]
            symbol:D4A6A2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
            ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
        Length = 232

 Score = 78 (32.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T+ S + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    46 RDPQTKRSRGFGFVTY-SCEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 96

 Score = 67 (28.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   103 KKIFVGGIKEDTGEYNLRDYFEKYGKIETIEV 134


>UNIPROTKB|F1LRH1 [details] [associations]
            symbol:Msi1 "RNA-binding protein Musashi homolog 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
            IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
            Uniprot:F1LRH1
        Length = 329

 Score = 81 (33.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
             KKIFVG L    T ED++ YF +FG++ D
Sbjct:    76 KKIFVGGLSVNTTVEDVKHYFEQFGKVDD 104

 Score = 68 (29.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
             +D  +K  RG GF+TF     V+ ++  + HEL   T+    A P+    + V R
Sbjct:    20 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 74


>UNIPROTKB|E2RF37 [details] [associations]
            symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
            Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
        Length = 330

 Score = 79 (32.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG  F+T+A+ + V+  M V  H++    V + +A  +ED  RP
Sbjct:    13 RDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDSQRP 64

 Score = 70 (29.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query:    95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             E SQR G     KKIFVG + ++     LR YF  +G+I
Sbjct:    59 EDSQRPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKI 97


>UNIPROTKB|D6R9K7 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
            ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
            ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
        Length = 150

 Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
 Identities = 15/40 (37%), Positives = 29/40 (72%)

Query:   103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
             K+F+G LP+EAT +++R  F ++G++L+  + K + F H+
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 42


>UNIPROTKB|D4A1X0 [details] [associations]
            symbol:D4A1X0 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
            GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
            ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
        Length = 312

 Score = 84 (34.6 bits), Expect = 0.00028, Sum P(2) = 0.00028
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
             +D  SK  RG GF+TF+S   V+  M    H + G  V   RA  +E+  +P
Sbjct:    42 RDPASKRSRGFGFVTFSSMAEVDVAMAARPHSIDGRVVEPKRAVAREESGKP 93

 Score = 63 (27.2 bits), Expect = 0.00028, Sum P(2) = 0.00028
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             KK+FVG + ++     LR YF  +G+I
Sbjct:   100 KKLFVGGIKEDTEEHHLRDYFEEYGKI 126


>UNIPROTKB|D6RD83 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016
            HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
            IPI:IPI00968092 ProteinModelPortal:D6RD83 SMR:D6RD83
            Ensembl:ENST00000509107 ArrayExpress:D6RD83 Bgee:D6RD83
            Uniprot:D6RD83
        Length = 92

 Score = 90 (36.7 bits), Expect = 0.00031, P = 0.00031
 Identities = 24/73 (32%), Positives = 37/73 (50%)

Query:    60 GGYGAYNAYISAATRYAALGAPTLYDHPGSF--YGRGESSQRIGKKIFVGRLPQEATAED 117
             GG GA  A  +A  +  A        H  S   +    ++QR   K+F+G L  + T +D
Sbjct:     7 GGDGAAAAATAAGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 66

Query:   118 LRRYFSRFGRILD 130
             L+ YFS+FG ++D
Sbjct:    67 LKDYFSKFGEVVD 79


>UNIPROTKB|F1LUM4 [details] [associations]
            symbol:F1LUM4 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
            ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
        Length = 209

 Score = 75 (31.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRP 53
             D  ++  RG GF+T++  + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    33 DPQTEHSRGFGFVTYSCVEEVDAAMCAWPHKVDGRVVEPKRAVSREDSVKP 83

 Score = 68 (29.0 bits), Expect = 0.00031, Sum P(2) = 0.00031
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:    90 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEV 121


>MGI|MGI:1924384 [details] [associations]
            symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
            [GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
            "protein kinase binding" evidence=ISO] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
            lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
            stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
            GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
            HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
            KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
            IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
            ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
            PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
            Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
            UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
            NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
        Length = 305

 Score = 88 (36.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 24/63 (38%), Positives = 32/63 (50%)

Query:     4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRPVG--RMSHG 60
             D+ S   RG GF+ F S D+ +   +V  H + G  V V +A PKED     G  R + G
Sbjct:   132 DKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGARAARG 191

Query:    61 GYG 63
             G G
Sbjct:   192 GRG 194

 Score = 57 (25.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 16/44 (36%), Positives = 19/44 (43%)

Query:    55 GRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 98
             G  S+GGYG Y AY        + G     D+   F G G  SQ
Sbjct:   223 GYNSYGGYGGYGAYGGGGGGGGSYGGS---DYGNGFGGFGSYSQ 263


>MGI|MGI:107376 [details] [associations]
            symbol:Msi1 "musashi RNA-binding protein 1" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
            "response to hormone stimulus" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
            GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
            GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
            EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
            RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
            PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
            ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
            PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
            Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
            UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
            EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
            Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
        Length = 362

 Score = 81 (33.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
             KKIFVG L    T ED++ YF +FG++ D
Sbjct:   109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137

 Score = 68 (29.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
             +D  +K  RG GF+TF     V+ ++  + HEL   T+    A P+    + V R
Sbjct:    53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107


>RGD|628778 [details] [associations]
            symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
            evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
            evidence=IMP] [GO:0030855 "epithelial cell differentiation"
            evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
            RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
            SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
            KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
            Genevestigator:Q8K3P4 Uniprot:Q8K3P4
        Length = 362

 Score = 81 (33.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
             KKIFVG L    T ED++ YF +FG++ D
Sbjct:   109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137

 Score = 68 (29.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
             +D  +K  RG GF+TF     V+ ++  + HEL   T+    A P+    + V R
Sbjct:    53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107


>UNIPROTKB|Q8K3P4 [details] [associations]
            symbol:Msi1 "RNA-binding protein Musashi homolog 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
            CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
            RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
            SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
            KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
            Genevestigator:Q8K3P4 Uniprot:Q8K3P4
        Length = 362

 Score = 81 (33.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
             KKIFVG L    T ED++ YF +FG++ D
Sbjct:   109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137

 Score = 68 (29.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
             +D  +K  RG GF+TF     V+ ++  + HEL   T+    A P+    + V R
Sbjct:    53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR 107


>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
            symbol:PFD0700c "RNA binding protein, putative"
            species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
            process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
            HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
            EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
            EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
            ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
        Length = 358

 Score = 84 (34.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVV---DRATPKE 48
             +D  +K +RG  F+T AS  + E ++ DTHEL G  V V   +  TP +
Sbjct:   147 QDHETKRNRGFAFVTMASHINKERILRDTHELNGKRVDVREENNTTPSD 195

 Score = 64 (27.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query:   100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
             I +KIFVG L    T + L  YFS FG I DV
Sbjct:   196 IQRKIFVGGLNYYWTKDTLESYFSTFGEI-DV 226


>UNIPROTKB|Q8I1U3 [details] [associations]
            symbol:PFD0700c "RNA binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
            metabolic process" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
            EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
            ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
            GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
            HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
        Length = 358

 Score = 84 (34.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVV---DRATPKE 48
             +D  +K +RG  F+T AS  + E ++ DTHEL G  V V   +  TP +
Sbjct:   147 QDHETKRNRGFAFVTMASHINKERILRDTHELNGKRVDVREENNTTPSD 195

 Score = 64 (27.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query:   100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
             I +KIFVG L    T + L  YFS FG I DV
Sbjct:   196 IQRKIFVGGLNYYWTKDTLESYFSTFGEI-DV 226


>RGD|1563684 [details] [associations]
            symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
            species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
            evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
            [GO:0017091 "AU-rich element binding" evidence=ISO] [GO:0019901
            "protein kinase binding" evidence=ISO] [GO:0032496 "response to
            lipopolysaccharide" evidence=ISO] [GO:0070935 "3'-UTR-mediated mRNA
            stabilization" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            REFSEQ:XM_003752953 Ncbi:XP_003753001
        Length = 226

 Score = 88 (36.0 bits), Expect = 0.00035, Sum P(2) = 0.00035
 Identities = 24/63 (38%), Positives = 32/63 (50%)

Query:     4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRPVG--RMSHG 60
             D+ S   RG GF+ F S D+ +   +V  H + G  V V +A PKED     G  R + G
Sbjct:    51 DKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGARAARG 110

Query:    61 GYG 63
             G G
Sbjct:   111 GRG 113

 Score = 52 (23.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
 Identities = 16/44 (36%), Positives = 20/44 (45%)

Query:    55 GRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 98
             G  S+GGYG Y AY       +  G+    D+   F G G  SQ
Sbjct:   140 GYNSYGGYGGYGAYGGGGGGGSYGGS----DYGNGFGGFGSYSQ 179


>UNIPROTKB|J3QRR5 [details] [associations]
            symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
            HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
            Ensembl:ENST00000578778 Uniprot:J3QRR5
        Length = 155

 Score = 100 (40.3 bits), Expect = 0.00037, P = 0.00037
 Identities = 15/40 (37%), Positives = 29/40 (72%)

Query:   103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
             K+F+G LP+EAT +++R  F ++G++L+  + K + F H+
Sbjct:     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 42


>UNIPROTKB|F1LXW0 [details] [associations]
            symbol:F1LXW0 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 IPI:IPI00212167 Ensembl:ENSRNOT00000008039
            Uniprot:F1LXW0
        Length = 293

 Score = 93 (37.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T+A+ + V+ +M    H++ G  V   RA  +ED  RP
Sbjct:    45 RDPNTKRSRGFGFVTYATVEEVDAVMNARPHKVDGRVVEPKRAVSREDSQRP 96

 Score = 49 (22.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query:    95 ESSQRIGK----KIFVGRLPQEATAEDLRRYFSRFGR 127
             E SQR G     KIFVG + ++     LR Y  + G+
Sbjct:    91 EDSQRPGAHLAVKIFVGGIKEDTEEHHLRDYSEQNGK 127


>UNIPROTKB|H0YA96 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
        Length = 210

 Score = 75 (31.5 bits), Expect = 0.00041, Sum P(2) = 0.00041
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KRFWFCHL 142
             KKIFVG L  +   E +R YF  FG +  + +P      KR  FC +
Sbjct:    86 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 132

 Score = 67 (28.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query:    11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             RG GF+ F  ++SV+ +M    H+L G  +   RA   +    PV ++  GG
Sbjct:    42 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 92


>TAIR|locus:2007903 [details] [associations]
            symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
            UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
            EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
            Uniprot:F4I906
        Length = 369

 Score = 108 (43.1 bits), Expect = 0.00042, P = 0.00042
 Identities = 36/109 (33%), Positives = 47/109 (43%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK----EDDFRPVGRM 57
             D  +   RG GF+TF + DSV+ L  D   HELG   V + RA PK    ++ FR  G  
Sbjct:   191 DHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDNSFRSYG-- 248

Query:    58 SHGGYGAYNAYISAATR-------YAALGAPTLYD-----HPGSFYGRG 94
             + G Y   ++Y   A         Y   G    Y      +P  FYG G
Sbjct:   249 ASGKYDQEDSYSGKANEDYSMYSGYGGYGGYGAYAGNSMVNPAGFYGYG 297


>UNIPROTKB|F1M6M1 [details] [associations]
            symbol:F1M6M1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074566 IPI:IPI00563231
            Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
        Length = 253

 Score = 77 (32.2 bits), Expect = 0.00043, Sum P(2) = 0.00043
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query:     7 SKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +K  RG GF+T  S + V+  M    H++ G  V   RA  +ED  RP
Sbjct:     1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDSQRP 48

 Score = 67 (28.6 bits), Expect = 0.00043, Sum P(2) = 0.00043
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             KKIFVG + ++     LR YF ++G+I
Sbjct:    55 KKIFVGSIKEDTEEHHLRDYFEQYGKI 81


>UNIPROTKB|Q99729 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
            evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
            EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
            EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
            EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
            IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
            PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
            UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
            SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
            PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
            PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
            Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
            KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
            GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
            neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
            OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
            EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
            ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
            Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
        Length = 332

 Score = 79 (32.9 bits), Expect = 0.00043, Sum P(2) = 0.00043
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query:   102 KKIFVGRL-PQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L P+  T E +R YF  FG I  + +P
Sbjct:   153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELP 186

 Score = 68 (29.0 bits), Expect = 0.00043, Sum P(2) = 0.00043
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             D  +   RG GFI F  A SVE ++    H L G  +   +A   + D  PV ++  GG
Sbjct:   103 DPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKD--PVKKIFVGG 159


>UNIPROTKB|F1M3H8 [details] [associations]
            symbol:F1M3H8 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
            Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
            GeneTree:ENSGT00700000104255 IPI:IPI00777708
            ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
            Uniprot:F1M3H8
        Length = 194

 Score = 79 (32.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query:     7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
             +K  R  GF+T+++ +  +  M  + H + G+TV + RA  +ED  RP
Sbjct:    44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP 91

 Score = 60 (26.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             KK+FVG L  +    DL  +FS+FG +
Sbjct:    98 KKLFVGGLKGDVAEGDLIEHFSQFGAV 124


>UNIPROTKB|Q5ZIH1 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
            OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
            EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
            STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
            KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
        Length = 257

 Score = 76 (31.8 bits), Expect = 0.00059, Sum P(2) = 0.00059
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KRFWFCHL 142
             KKIFVG L  +   E +R YF  FG +  + +P      KR  FC +
Sbjct:    84 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFI 130

 Score = 67 (28.6 bits), Expect = 0.00059, Sum P(2) = 0.00059
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query:    11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             RG GF+ F  ++SV+ +M    H+L G  +   RA   +    PV ++  GG
Sbjct:    40 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 90


>UNIPROTKB|F1NCW4 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
            IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
            Uniprot:F1NCW4
        Length = 258

 Score = 76 (31.8 bits), Expect = 0.00060, Sum P(2) = 0.00060
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KRFWFCHL 142
             KKIFVG L  +   E +R YF  FG +  + +P      KR  FC +
Sbjct:    85 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFI 131

 Score = 67 (28.6 bits), Expect = 0.00060, Sum P(2) = 0.00060
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query:    11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             RG GF+ F  ++SV+ +M    H+L G  +   RA   +    PV ++  GG
Sbjct:    41 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 91


>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
            symbol:hnrnpa0b "heterogeneous nuclear
            ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
            EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
            ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
            GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
            OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
            Uniprot:Q6NYW8
        Length = 314

 Score = 77 (32.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query:    92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
             GR E+  ++ KKIFVG L  +   +DL  +FS+FG I
Sbjct:    90 GRPEALAKV-KKIFVGGLKDDIEEKDLTEFFSQFGMI 125

 Score = 68 (29.0 bits), Expect = 0.00065, Sum P(2) = 0.00065
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
             DQ  ++ R  GF+T+++++  +  M    H + G  V V RA  +ED  RP
Sbjct:    43 DQLQRS-RCFGFVTYSTSEEADAAMAARPHVVDGKNVEVKRAVAREDAGRP 92


>DICTYBASE|DDB_G0279695 [details] [associations]
            symbol:DDB_G0279695 "RNA recognition motif-containing
            protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0279695 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000032 eggNOG:COG0724
            ProtClustDB:CLSZ2430003 RefSeq:XP_641604.1
            ProteinModelPortal:Q54WE9 PRIDE:Q54WE9 EnsemblProtists:DDB0233747
            GeneID:8622181 KEGG:ddi:DDB_G0279695 InParanoid:Q54WE9 OMA:HEMDGRQ
            Uniprot:Q54WE9
        Length = 84

 Score = 87 (35.7 bits), Expect = 0.00071, P = 0.00071
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query:     4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK 47
             D+ +K  +G GF+TF +A+S +N +   HE+ G  +VV+ A  K
Sbjct:    37 DRITKRSKGFGFVTFDNAESAQNAVNSVHEMDGRQLVVNLAFDK 80


>CGD|CAL0003460 [details] [associations]
            symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
            cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
            evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
            RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
            SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
            KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
        Length = 475

 Score = 107 (42.7 bits), Expect = 0.00083, P = 0.00083
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             KD  +   RG GF+TF  A SV+ L+ D H L G  +   RA  KED  + VG++  GG
Sbjct:   195 KDSATGRSRGFGFLTFEDAKSVDALLKDRHVLDGKLIDPKRAISKEDQEK-VGKIFVGG 252


>UNIPROTKB|H0Y8G5 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
        Length = 261

 Score = 75 (31.5 bits), Expect = 0.00085, Sum P(2) = 0.00085
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KRFWFCHL 142
             KKIFVG L  +   E +R YF  FG +  + +P      KR  FC +
Sbjct:   115 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 161

 Score = 67 (28.6 bits), Expect = 0.00085, Sum P(2) = 0.00085
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query:    11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             RG GF+ F  ++SV+ +M    H+L G  +   RA   +    PV ++  GG
Sbjct:    71 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 121


>UNIPROTKB|D6RAF8 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
            HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
            IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
            Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
            Uniprot:D6RAF8
        Length = 221

 Score = 73 (30.8 bits), Expect = 0.00089, Sum P(2) = 0.00089
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
             KKIFVG L  +   E +R YF  FG +  + +P
Sbjct:   182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214

 Score = 67 (28.6 bits), Expect = 0.00089, Sum P(2) = 0.00089
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query:    11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
             RG GF+ F  ++SV+ +M    H+L G  +   RA   +    PV ++  GG
Sbjct:   138 RGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPVKKIFVGG 188


>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
            symbol:hnrnpa0a "heterogeneous nuclear
            ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
            EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
            ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
            GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
            NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
        Length = 305

 Score = 78 (32.5 bits), Expect = 0.00092, Sum P(2) = 0.00092
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             ++Q  K  R  GF+T++S D  ++ M    H L G+ V + RA  +ED  +P
Sbjct:    43 QNQQLKRSRCFGFVTYSSPDEADSAMSARPHILDGNNVELKRAVAREDAGKP 94

 Score = 65 (27.9 bits), Expect = 0.00092, Sum P(2) = 0.00092
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query:    92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
             G+ E+  ++ KKIF+G L  +   + LR  FS+FG +
Sbjct:    92 GKPEALAKV-KKIFIGGLKDDIEEDHLRDCFSQFGAV 127


>UNIPROTKB|E9PSU5 [details] [associations]
            symbol:E9PSU5 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
            Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
        Length = 363

 Score = 78 (32.5 bits), Expect = 0.00094, Sum P(2) = 0.00094
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query:     3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GF+T+ S + V+  M    H++ G  V   RA  +ED  +P
Sbjct:    53 RDPQTKRSRGFGFVTY-SCEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 103

 Score = 67 (28.6 bits), Expect = 0.00094, Sum P(2) = 0.00094
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query:   102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
             KKIFVG + ++    +LR YF ++G+I  + V
Sbjct:   110 KKIFVGGIKEDTGEYNLRDYFEKYGKIETIEV 141


>UNIPROTKB|E2RF95 [details] [associations]
            symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
            Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
        Length = 308

 Score = 77 (32.2 bits), Expect = 0.00099, Sum P(2) = 0.00099
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query:     3 KDQGSKAHRGIGFITFASA--DSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
             +D  +K  RG GFIT  +A  + V+  M    H++ G  V   RA  +ED  RP
Sbjct:    47 RDPNTKGSRGFGFITCTTATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 100

 Score = 66 (28.3 bits), Expect = 0.00099, Sum P(2) = 0.00099
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query:    95 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRI 128
             E SQR G     KK FVG + ++     LR YF ++G+I
Sbjct:    95 EDSQRPGAHLTVKKTFVGGIKEDTEEHHLRDYFEQYGKI 133


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       171   0.00090  108 3  11 22  0.36    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  114
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.43u 0.08s 15.51t   Elapsed:  00:00:02
  Total cpu time:  15.44u 0.08s 15.52t   Elapsed:  00:00:02
  Start:  Thu May  9 23:12:42 2013   End:  Thu May  9 23:12:44 2013
WARNINGS ISSUED:  1

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