BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030822
(171 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224094314|ref|XP_002310138.1| predicted protein [Populus trichocarpa]
gi|222853041|gb|EEE90588.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 244 bits (623), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 118/135 (87%), Positives = 126/135 (93%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
MPKD SKAHRGIGFIT+ASADSV+NLM +THELGGSTVVVDRATPKEDDFRP GRM+ G
Sbjct: 122 MPKDHSSKAHRGIGFITYASADSVDNLMAETHELGGSTVVVDRATPKEDDFRPNGRMAPG 181
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
GYGAYNAYISAATRYAALGAPTLYDHPG FYGRGESS+ +GKKIFVGRLPQEA+AEDLR+
Sbjct: 182 GYGAYNAYISAATRYAALGAPTLYDHPGPFYGRGESSRGMGKKIFVGRLPQEASAEDLRQ 241
Query: 121 YFSRFGRILDVYVPK 135
YF RFG ILDVYVPK
Sbjct: 242 YFGRFGHILDVYVPK 256
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ S RG G++TF SA+ + ++ H LG + V ATPKE+
Sbjct: 36 KERSSGRSRGFGYVTFVSAEDAKAVLSSEHFLGKRMLEVKVATPKEE------------- 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ AP+ + +IFV R+P T R +F
Sbjct: 83 ---------------MRAPS----------------KKATRIFVARIPPSVTETTFRSHF 111
Query: 123 SRFGRILDVYVPK 135
++G I+D+Y+PK
Sbjct: 112 EKYGEIIDLYMPK 124
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+PKD HRG GF+TFA + + +HE+ G V +D ATP DD P G
Sbjct: 254 VPKDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPI-DDAGPSGNFMMS 312
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSF 90
G + +Y + + YD ++
Sbjct: 313 GPEPFGSYAGPMRNFGRMYGTLDYDDASAY 342
>gi|255565200|ref|XP_002523592.1| RNA-binding protein, putative [Ricinus communis]
gi|223537154|gb|EEF38787.1| RNA-binding protein, putative [Ricinus communis]
Length = 359
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/135 (86%), Positives = 124/135 (91%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
MPKD SKAHRGIGFITFASADSV++LM DTHELGGSTVVVDRATPKEDDFRPVGRM+HG
Sbjct: 123 MPKDHSSKAHRGIGFITFASADSVDSLMADTHELGGSTVVVDRATPKEDDFRPVGRMAHG 182
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
GYGAYNAYISAATRYAALGAPTLYDHPG YG GE ++ +GKKIFVGRLPQEAT EDLR+
Sbjct: 183 GYGAYNAYISAATRYAALGAPTLYDHPGPMYGTGEPARGVGKKIFVGRLPQEATPEDLRQ 242
Query: 121 YFSRFGRILDVYVPK 135
YF RFG ILDVYVPK
Sbjct: 243 YFGRFGHILDVYVPK 257
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 45/134 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR-PVGRMSHGG 61
K++ S RG G++TFASA+ ++ + H LG + V ATPK+++ R P +++
Sbjct: 36 KERSSGRSRGFGYVTFASAEDAKSALSSEHFLGNRMLEVKVATPKQEEMRAPAKKVT--- 92
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
+IFV R+P T R +
Sbjct: 93 -----------------------------------------RIFVARIPPSVTETTFRSH 111
Query: 122 FSRFGRILDVYVPK 135
F ++G I+D+Y+PK
Sbjct: 112 FEKYGEIIDLYMPK 125
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED-----DFRPVG 55
+PKD HRG GF+TFA + + +HE+ G V +D ATP +D +F
Sbjct: 255 VPKDPKRTGHRGFGFVTFAEEGVADRVSRRSHEICGHQVAIDSATPIDDAGPSGNFMMNA 314
Query: 56 RMSHGGYG 63
S GGYG
Sbjct: 315 APSFGGYG 322
>gi|359480888|ref|XP_002282572.2| PREDICTED: uncharacterized RNA-binding protein C660.15-like isoform
1 [Vitis vinifera]
gi|359480890|ref|XP_003632540.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like isoform
2 [Vitis vinifera]
gi|296082418|emb|CBI21423.3| unnamed protein product [Vitis vinifera]
Length = 359
Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/135 (84%), Positives = 126/135 (93%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
MPKD GSK HRGIGFITFASA+SV+NLMV+THELGGS VVVDRATPKE++FRPV R+ G
Sbjct: 123 MPKDHGSKGHRGIGFITFASAESVDNLMVETHELGGSAVVVDRATPKEEEFRPVSRVPQG 182
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
GYGAYNAYI+AATRYAALGAPTLYDHPGS YGRGES++ +GKKIFVGRLPQEA+AEDLR+
Sbjct: 183 GYGAYNAYITAATRYAALGAPTLYDHPGSVYGRGESTRAMGKKIFVGRLPQEASAEDLRQ 242
Query: 121 YFSRFGRILDVYVPK 135
YF RFGRILDVYVPK
Sbjct: 243 YFGRFGRILDVYVPK 257
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 43/133 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG G++TF S + + ++ H LG + V ATPKE+ R
Sbjct: 36 KERSTGRSRGFGYVTFGSVEDAKKVLSSEHFLGNRMLEVKVATPKEEMMR---------- 85
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A I TR IFV R+P R YF
Sbjct: 86 ----APIKKVTR-----------------------------IFVARIPDSVNEAAFRSYF 112
Query: 123 SRFGRILDVYVPK 135
+G I D+Y+PK
Sbjct: 113 ETYGEITDLYMPK 125
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+PKD HRG GF+TFA + + +HE+ G V +D ATP +D
Sbjct: 255 VPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDD 303
>gi|224084344|ref|XP_002307266.1| predicted protein [Populus trichocarpa]
gi|222856715|gb|EEE94262.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/135 (83%), Positives = 124/135 (91%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
MPKD SKAHRGIGFIT+ASADSV++LM +THELGGSTVVVDRATPKEDDFRP+ R + G
Sbjct: 122 MPKDHSSKAHRGIGFITYASADSVDSLMAETHELGGSTVVVDRATPKEDDFRPIARTAPG 181
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
GYGAYNAYISAATRYAALGAPTLYDHPG FYGRGESS+ +GKKIFVGRLPQEA+ EDLR+
Sbjct: 182 GYGAYNAYISAATRYAALGAPTLYDHPGPFYGRGESSRGMGKKIFVGRLPQEASTEDLRQ 241
Query: 121 YFSRFGRILDVYVPK 135
YF RFG I+DVYVPK
Sbjct: 242 YFGRFGHIIDVYVPK 256
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ S RG G++TF SA+ + ++ H LG + + ATPKE+
Sbjct: 36 KERSSGRSRGFGYVTFVSAEDAKAVLSGEHFLGKRMLEIKVATPKEE------------- 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ APT + +IFV R+P T R +F
Sbjct: 83 ---------------MRAPT----------------KKATRIFVARIPPSVTETTFRSHF 111
Query: 123 SRFGRILDVYVPK 135
++G I+D+Y+PK
Sbjct: 112 EKYGEIIDLYMPK 124
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED-----DFRPVG 55
+PKD HRG GF+TFA + + +HE+ G V +D ATP +D +F
Sbjct: 254 VPKDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPIDDAGPSGNFMMSA 313
Query: 56 RMSHGGYG 63
GGYG
Sbjct: 314 PEPFGGYG 321
>gi|356496896|ref|XP_003517301.1| PREDICTED: DAZ-associated protein 1-like [Glycine max]
Length = 362
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/140 (80%), Positives = 123/140 (87%), Gaps = 5/140 (3%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRM--- 57
MPKDQGSK HRGIGFITFASADSVENLM +THELGGS VVVDRATPK+DDF+P+GRM
Sbjct: 123 MPKDQGSKMHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDDDFKPIGRMPLP 182
Query: 58 --SHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATA 115
+ GGYGAYNAYISAATRYAALGAPTLYD PG YGRG+ S+R KKIFVGRLP EAT+
Sbjct: 183 PPTQGGYGAYNAYISAATRYAALGAPTLYDQPGPIYGRGDPSRRTSKKIFVGRLPPEATS 242
Query: 116 EDLRRYFSRFGRILDVYVPK 135
+DLR+YF RFGRILDVYVP+
Sbjct: 243 DDLRQYFGRFGRILDVYVPR 262
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG G++TFAS D + ++ H LG T+ V ATPKE+ PV +++
Sbjct: 37 KERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVT---- 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+IFV R+PQ T R +F
Sbjct: 93 ----------------------------------------RIFVARIPQSVTEATFRSHF 112
Query: 123 SRFGRILDVYVPK 135
++G I D+Y+PK
Sbjct: 113 EKYGEITDLYMPK 125
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED-----DFRPVG 55
+P+D HRG GF+TFA + + +HE+ G V +D ATP +D +F
Sbjct: 260 VPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMNS 319
Query: 56 RMSHGGYG 63
S GGYG
Sbjct: 320 MESFGGYG 327
>gi|356541820|ref|XP_003539370.1| PREDICTED: DAZ-associated protein 1-like [Glycine max]
Length = 365
Score = 224 bits (571), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/143 (78%), Positives = 123/143 (86%), Gaps = 9/143 (6%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSH- 59
MPKDQGSK HRGIGFITFASADSVENLM +THELGGS VVVDRATPK+DDF+P+GRM
Sbjct: 123 MPKDQGSKMHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDDDFKPMGRMPPP 182
Query: 60 -------GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQE 112
GGYGAYNAYISAATRYAALGAPTLYDHPG YGRG+ ++R KKIFVGRLP E
Sbjct: 183 PPPPPQGGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGD-ARRTSKKIFVGRLPPE 241
Query: 113 ATAEDLRRYFSRFGRILDVYVPK 135
AT++DLR+YF RFGRILDVYVP+
Sbjct: 242 ATSDDLRQYFGRFGRILDVYVPR 264
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG G++TFAS D + ++ H +G T+ V ATPKE+ PV +++
Sbjct: 37 KERSTGRSRGFGYVTFASVDDAKEVLSSEHIIGNRTLEVKVATPKEEMRAPVKKVT---- 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+IFV R+PQ T R +F
Sbjct: 93 ----------------------------------------RIFVARIPQSVTEATFRSHF 112
Query: 123 SRFGRILDVYVPK 135
++G I D+Y+PK
Sbjct: 113 EKYGEITDLYMPK 125
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED-----DFRPVG 55
+P+D HRG GF+TFA + + + +HE+ G V +D ATP +D +F
Sbjct: 262 VPRDPKRAGHRGFGFVTFAEDGAADRVSRRSHEICGHPVAIDSATPVDDAGPSGNFMMNS 321
Query: 56 RMSHGGYG 63
S GGYG
Sbjct: 322 MESFGGYG 329
>gi|217074298|gb|ACJ85509.1| unknown [Medicago truncatula]
gi|388503058|gb|AFK39595.1| unknown [Medicago truncatula]
Length = 397
Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/136 (79%), Positives = 117/136 (86%), Gaps = 1/136 (0%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
MPKDQGSK HRGIGFITF +A+SVENLM +THELGGS VVVDRATPKEDD +P GRMS G
Sbjct: 123 MPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQG 182
Query: 61 G-YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLR 119
G YGAYNAYIS ATRYAALGAPTLYDHPG YGRGE +RI KKIFVGRLP EA +EDLR
Sbjct: 183 GGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLR 242
Query: 120 RYFSRFGRILDVYVPK 135
+YF RFGRI DV +P+
Sbjct: 243 QYFGRFGRIEDVCIPR 258
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG G++TFAS D + ++ H LG + V ATPKE+ P +++
Sbjct: 37 KERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAKKVT---- 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+IFV R+P T E R +F
Sbjct: 93 ----------------------------------------RIFVARIPPSVTEETFRSHF 112
Query: 123 SRFGRILDVYVPK 135
++G I D+ +PK
Sbjct: 113 EKYGDITDLCMPK 125
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRM--- 57
+P+D HRG GF+TFA + + + HE+ G V +D ATP DD RP G
Sbjct: 256 IPRDPKRTGHRGFGFVTFADEGVADRVSLRPHEICGHEVAIDSATPV-DDARPSGNFMMN 314
Query: 58 ----SHGGYGA 64
S GGYG
Sbjct: 315 NSMESFGGYGG 325
>gi|357482897|ref|XP_003611735.1| RNA-binding protein [Medicago truncatula]
gi|355513070|gb|AES94693.1| RNA-binding protein [Medicago truncatula]
Length = 403
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 109/142 (76%), Positives = 118/142 (83%), Gaps = 7/142 (4%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK--EDDFRPVGRMS 58
MPKDQGSK HRGIGFITF +A+SVENLM +THELGGS VVVDRATPK EDD +P GRMS
Sbjct: 123 MPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKAREDDVKPTGRMS 182
Query: 59 H-GGYGAYNAYISAATRYAALGAPTLYDHPGSFY----GRGESSQRIGKKIFVGRLPQEA 113
GGYGAYNAYIS ATRYAALGAPTLYDHPG Y GRGE +RI KKIFVGRLP EA
Sbjct: 183 QGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGSKHGRGEPRRRISKKIFVGRLPPEA 242
Query: 114 TAEDLRRYFSRFGRILDVYVPK 135
+EDLR+YF RFGRI DVY+P+
Sbjct: 243 NSEDLRQYFGRFGRIEDVYIPR 264
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG G++TFAS D + ++ H LG + V ATPKE+ P +++
Sbjct: 37 KERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAKKVT---- 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+IFV R+P T E R +F
Sbjct: 93 ----------------------------------------RIFVARIPPSVTEETFRSHF 112
Query: 123 SRFGRILDVYVPK 135
++G I D+Y+PK
Sbjct: 113 EKYGDITDLYMPK 125
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRM--- 57
+P+D HRG GF+TFA + + + HE+ G V +D ATP DD RP G
Sbjct: 262 IPRDPKRTGHRGFGFVTFADEGVADRVSLRPHEICGHEVAIDSATPV-DDARPSGNFMMN 320
Query: 58 ----SHGGYG 63
S GGYG
Sbjct: 321 NSMESFGGYG 330
>gi|449460598|ref|XP_004148032.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cucumis
sativus]
gi|449502733|ref|XP_004161727.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cucumis
sativus]
Length = 377
Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 113/146 (77%), Positives = 123/146 (84%), Gaps = 11/146 (7%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSH- 59
MPKDQGSK HRGIGFITFAS+DSVENLM DTHELGGS VVVDRATPK+DDFRP+G+M
Sbjct: 122 MPKDQGSKTHRGIGFITFASSDSVENLMADTHELGGSNVVVDRATPKDDDFRPIGKMPQG 181
Query: 60 -----GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS-----QRIGKKIFVGRL 109
GGYGAYNAYISAATRYAALGAPTLYDHPGS YG + + +GKKIFVGRL
Sbjct: 182 GGGGGGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGSMSPTVPLEFRGMGKKIFVGRL 241
Query: 110 PQEATAEDLRRYFSRFGRILDVYVPK 135
PQEA+A+DLR+YF RFGRILDVYVPK
Sbjct: 242 PQEASADDLRQYFGRFGRILDVYVPK 267
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG G++TFA+ + +N + H LG + V ATPKE+ P R++
Sbjct: 36 KERSTGRSRGFGYVTFATDEDAKNALSSEHFLGNRMMEVKVATPKEEMRAPPKRVT---- 91
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+IFV R+ Q T R +F
Sbjct: 92 ----------------------------------------RIFVARISQTVTEAAFRSHF 111
Query: 123 SRFGRILDVYVPK 135
++G I D+Y+PK
Sbjct: 112 EKYGEITDLYMPK 124
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+PKD HRG GF+TFA + + +HE+ G V +D ATP +D
Sbjct: 265 VPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDD 313
>gi|358349448|ref|XP_003638749.1| RNA-binding protein [Medicago truncatula]
gi|355504684|gb|AES85887.1| RNA-binding protein [Medicago truncatula]
Length = 371
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/137 (74%), Positives = 114/137 (83%), Gaps = 2/137 (1%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRM--S 58
MPKD+GSK HRGIGFITFA+ADSVENLM +THELGGS VVVDRATPKEDDF+P+GR
Sbjct: 123 MPKDRGSKTHRGIGFITFATADSVENLMKETHELGGSDVVVDRATPKEDDFKPIGRTRTP 182
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDL 118
GY AY+ YI A+TRYAALGAPT+YD P S YGRGE ++ I KKIFVGRLP EAT EDL
Sbjct: 183 QLGYSAYSTYIPASTRYAALGAPTMYDRPSSIYGRGEPARGISKKIFVGRLPPEATTEDL 242
Query: 119 RRYFSRFGRILDVYVPK 135
R YF RFG ILDVY+P+
Sbjct: 243 RLYFGRFGHILDVYIPR 259
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG G++TFAS D +N++ H LG T+ V ATPKE+ PV +++
Sbjct: 37 KERSTGRSRGFGYVTFASVDDAKNVLSSEHSLGDRTLEVKVATPKEEMRAPVKKVT---- 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+IFV R+ T E R +F
Sbjct: 93 ----------------------------------------RIFVARIAPSVTEETFRSHF 112
Query: 123 SRFGRILDVYVPK 135
++G I D+Y+PK
Sbjct: 113 EKYGDITDLYMPK 125
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+P+D HRG GF+TFA + + + HE+ G V +D A P ++
Sbjct: 257 IPRDVKRPGHRGFGFVTFADSGVADRVSRRPHEICGQEVAIDSAAPLDE 305
>gi|226499886|ref|NP_001151590.1| heterogeneous nuclear ribonucleoprotein 27C [Zea mays]
gi|195647980|gb|ACG43458.1| heterogeneous nuclear ribonucleoprotein 27C [Zea mays]
Length = 462
Score = 208 bits (529), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 103/138 (74%), Positives = 116/138 (84%), Gaps = 3/138 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR-PVGRMSH 59
MPK+ GSK HRGIGFITF SA+SV+++M ++HEL G+TVVVDRATPKE+D R P R S
Sbjct: 225 MPKEHGSKGHRGIGFITFQSAESVDSIMQESHELDGTTVVVDRATPKEEDVRYPPSRPSQ 284
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGE--SSQRIGKKIFVGRLPQEATAED 117
GGYGAYNAYISAATRYA LGAPTLYDHPGS YGRG SSQ +GKKIFVGRLPQEA +D
Sbjct: 285 GGYGAYNAYISAATRYATLGAPTLYDHPGSAYGRGYYGSSQAVGKKIFVGRLPQEANTDD 344
Query: 118 LRRYFSRFGRILDVYVPK 135
LR YF RFGRI+D Y+PK
Sbjct: 345 LRHYFGRFGRIVDAYIPK 362
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 43/134 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+++ S RG G++TFASAD +N++ H LG T+ V ATPKE+
Sbjct: 138 EERSSGRSRGFGYVTFASADDAKNVLDCEHVLGSRTLEVKIATPKEE------------- 184
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
S T+ A +IFV R+PQ RR+F
Sbjct: 185 -----MKSQGTKKAT-------------------------RIFVARIPQSVDESMFRRHF 214
Query: 123 SRFGRILDVYVPKR 136
FG ILD+Y+PK
Sbjct: 215 EAFGEILDLYMPKE 228
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+PKD HRG GF+TFA E + +HE+ G V +D A P E+D S G
Sbjct: 360 IPKDPKRSGHRGFGFVTFADEGVAERVSRRSHEILGHEVAIDTAAPLEND-------SAG 412
Query: 61 GYGAYNAYISAATRYAALGA 80
G YI Y A G+
Sbjct: 413 G-----GYIDPMDLYGAYGS 427
>gi|224030865|gb|ACN34508.1| unknown [Zea mays]
gi|414878724|tpg|DAA55855.1| TPA: heterogeneous nuclear ribonucleoprotein 27C isoform 1 [Zea
mays]
gi|414878725|tpg|DAA55856.1| TPA: heterogeneous nuclear ribonucleoprotein 27C isoform 2 [Zea
mays]
Length = 360
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/138 (74%), Positives = 116/138 (84%), Gaps = 3/138 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR-PVGRMSH 59
MPK+ GSK HRGIGFITF SA+SV+++M ++HEL G+TVVVDRATPKE+D R P R S
Sbjct: 123 MPKEHGSKGHRGIGFITFQSAESVDSIMQESHELDGTTVVVDRATPKEEDVRYPPSRPSQ 182
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG--ESSQRIGKKIFVGRLPQEATAED 117
GGYGAYNAYISAATRYA LGAPTLYDHPGS YGRG SSQ +GKKIFVGRLPQEA +D
Sbjct: 183 GGYGAYNAYISAATRYATLGAPTLYDHPGSAYGRGYYGSSQAVGKKIFVGRLPQEANTDD 242
Query: 118 LRRYFSRFGRILDVYVPK 135
LR YF RFGRI+D Y+PK
Sbjct: 243 LRHYFGRFGRIVDAYIPK 260
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 43/134 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ S RG G++TFASAD +N++ H LG T+ V ATPKE+
Sbjct: 36 KERSSGRSRGFGYVTFASADDAKNVLDCEHVLGSRTLEVKIATPKEE------------- 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
S T+ A +IFV R+PQ RR+F
Sbjct: 83 -----MKSQGTKKAT-------------------------RIFVARIPQSVDESMFRRHF 112
Query: 123 SRFGRILDVYVPKR 136
FG ILD+Y+PK
Sbjct: 113 EAFGEILDLYMPKE 126
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+PKD HRG GF+TFA E + +HE+ G V +D A P E+D S G
Sbjct: 258 IPKDPKRSGHRGFGFVTFADEGVAERVSRRSHEILGHEVAIDTAAPLEND-------SAG 310
Query: 61 GYGAYNAYISAATRYAALGA 80
G YI Y A G+
Sbjct: 311 G-----GYIDPMDLYGAYGS 325
>gi|413951342|gb|AFW83991.1| hypothetical protein ZEAMMB73_503439 [Zea mays]
Length = 278
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/138 (73%), Positives = 116/138 (84%), Gaps = 3/138 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR-PVGRMSH 59
MPK+ GSK HRGIGFITF SA+SV+N+M ++HEL G+TVVVDRATPK++D R P R S
Sbjct: 41 MPKEHGSKGHRGIGFITFQSAESVDNIMQESHELDGTTVVVDRATPKDEDVRYPPSRPSQ 100
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG--ESSQRIGKKIFVGRLPQEATAED 117
GGYGAYNAYISAATRYA LGAPTLYDHPGS YGRG SQ +GKKIFVGRLPQEA +D
Sbjct: 101 GGYGAYNAYISAATRYATLGAPTLYDHPGSAYGRGYYGPSQAVGKKIFVGRLPQEANTDD 160
Query: 118 LRRYFSRFGRILDVYVPK 135
LR+YF RFGRI+D Y+PK
Sbjct: 161 LRQYFGRFGRIVDAYIPK 178
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD 50
+PKD HRG GF+TFA E + +HE+ G V +D A P E+D
Sbjct: 176 IPKDPKRSGHRGFGFVTFADDGVAERVARRSHEILGHEVAIDTAAPLEND 225
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
+IFV R+PQ RR+F FG ILD+Y+PK
Sbjct: 11 RIFVARIPQSVDESMFRRHFEAFGEILDLYMPKE 44
>gi|212723574|ref|NP_001131827.1| uncharacterized protein LOC100193201 [Zea mays]
gi|194692652|gb|ACF80410.1| unknown [Zea mays]
gi|194701144|gb|ACF84656.1| unknown [Zea mays]
gi|224032577|gb|ACN35364.1| unknown [Zea mays]
gi|413951337|gb|AFW83986.1| heterogeneous nuclear ribonucleoprotein 27C isoform 1 [Zea mays]
gi|413951338|gb|AFW83987.1| heterogeneous nuclear ribonucleoprotein 27C isoform 2 [Zea mays]
gi|413951339|gb|AFW83988.1| heterogeneous nuclear ribonucleoprotein 27C isoform 3 [Zea mays]
gi|413951340|gb|AFW83989.1| heterogeneous nuclear ribonucleoprotein 27C isoform 4 [Zea mays]
gi|413951341|gb|AFW83990.1| heterogeneous nuclear ribonucleoprotein 27C isoform 5 [Zea mays]
Length = 360
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/138 (73%), Positives = 116/138 (84%), Gaps = 3/138 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR-PVGRMSH 59
MPK+ GSK HRGIGFITF SA+SV+N+M ++HEL G+TVVVDRATPK++D R P R S
Sbjct: 123 MPKEHGSKGHRGIGFITFQSAESVDNIMQESHELDGTTVVVDRATPKDEDVRYPPSRPSQ 182
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG--ESSQRIGKKIFVGRLPQEATAED 117
GGYGAYNAYISAATRYA LGAPTLYDHPGS YGRG SQ +GKKIFVGRLPQEA +D
Sbjct: 183 GGYGAYNAYISAATRYATLGAPTLYDHPGSAYGRGYYGPSQAVGKKIFVGRLPQEANTDD 242
Query: 118 LRRYFSRFGRILDVYVPK 135
LR+YF RFGRI+D Y+PK
Sbjct: 243 LRQYFGRFGRIVDAYIPK 260
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 43/134 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ S RG G++TFASAD +N++ H LG T+ V ATPKE+ M G
Sbjct: 36 KERSSGRSRGFGYVTFASADDAKNVLDCEHVLGSRTLEVKVATPKEE-------MKSQG- 87
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ +IFV R+PQ RR+F
Sbjct: 88 -----------------------------------SKKATRIFVARIPQSVDESMFRRHF 112
Query: 123 SRFGRILDVYVPKR 136
FG ILD+Y+PK
Sbjct: 113 EAFGEILDLYMPKE 126
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMS-- 58
+PKD HRG GF+TFA E + +HE+ G V +D A P E+D G +
Sbjct: 258 IPKDPKRSGHRGFGFVTFADDGVAERVARRSHEILGHEVAIDTAAPLENDSAAGGYIDPM 317
Query: 59 --HGGYGAYNAY 68
+G YG+ ++
Sbjct: 318 DLYGAYGSMRSF 329
>gi|195624050|gb|ACG33855.1| heterogeneous nuclear ribonucleoprotein 27C [Zea mays]
gi|195644612|gb|ACG41774.1| heterogeneous nuclear ribonucleoprotein 27C [Zea mays]
Length = 360
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/138 (73%), Positives = 116/138 (84%), Gaps = 3/138 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR-PVGRMSH 59
MPK+ GSK HRGIGFITF SA+SV+N+M ++HEL G+TVVVDRATPK++D R P R S
Sbjct: 123 MPKEHGSKGHRGIGFITFQSAESVDNIMQESHELDGTTVVVDRATPKDEDVRYPPSRPSQ 182
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG--ESSQRIGKKIFVGRLPQEATAED 117
GGYGAYNAYISAATRYA LGAPTLYDHPGS YGRG SQ +GKKIFVGRLPQEA +D
Sbjct: 183 GGYGAYNAYISAATRYATLGAPTLYDHPGSAYGRGYYGPSQAVGKKIFVGRLPQEANTDD 242
Query: 118 LRRYFSRFGRILDVYVPK 135
LR+YF RFGRI+D Y+PK
Sbjct: 243 LRQYFGRFGRIVDAYIPK 260
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 43/134 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ S RG G++TFASAD +N++ H LG T+ V ATPKE+ M G
Sbjct: 36 KERSSGRSRGFGYVTFASADDAKNVLDCEHVLGSRTLEVKVATPKEE-------MKSQG- 87
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ +IFV R+PQ RR+F
Sbjct: 88 -----------------------------------SKKATRIFVARIPQSVDESMFRRHF 112
Query: 123 SRFGRILDVYVPKR 136
FG ILD+Y+PK
Sbjct: 113 EAFGEILDLYMPKE 126
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMS-- 58
+PKD HRG GF+TFA E + +HE+ G V +D A P E+D G +
Sbjct: 258 IPKDPKRSGHRGFGFVTFADDGVAERVARRSHEILGHEVAIDTAAPLENDSAAGGYIDPM 317
Query: 59 --HGGYGAYNAY 68
+G YG+ ++
Sbjct: 318 DLYGAYGSMRSF 329
>gi|147782862|emb|CAN61300.1| hypothetical protein VITISV_011315 [Vitis vinifera]
Length = 335
Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/152 (69%), Positives = 117/152 (76%), Gaps = 26/152 (17%)
Query: 3 KDQGSKAHRGIGFITFASA-------------------DSVENLMVDTHELGGSTVVVDR 43
+D GSK HRGIGFITFASA SV+NLMV+THELGGSTVV
Sbjct: 106 QDHGSKGHRGIGFITFASAGQYILNFPWHLIFNILNDAKSVDNLMVETHELGGSTVV--- 162
Query: 44 ATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKK 103
E++FRPV R+ GGYGAYNAYI+AATRYAALGAPTLYDHPGS YGRGES++ +GKK
Sbjct: 163 ----EEEFRPVSRVPQGGYGAYNAYITAATRYAALGAPTLYDHPGSVYGRGESTRAMGKK 218
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
IFVGRLPQEA+AEDLR+YF RFGRILDVYVPK
Sbjct: 219 IFVGRLPQEASAEDLRQYFGRFGRILDVYVPK 250
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+PKD HRG GF+TFA + + +HE+ G V +D ATP +D
Sbjct: 248 VPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDD 296
>gi|15290173|dbj|BAB63863.1| putative RNA-binding like protein [Oryza sativa Japonica Group]
Length = 523
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/141 (72%), Positives = 116/141 (82%), Gaps = 6/141 (4%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR--PVGRMS 58
MPK+ GSK HRGIGFITF SA+SV+++M D+HEL G+TVVVDRATPK+++ R P S
Sbjct: 283 MPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRGAS 342
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG---ESSQRIG-KKIFVGRLPQEAT 114
GGYGAYNAYISAATRYAALGAPTLYDHPGS YGRG SSQ +G KKIFVGRLPQEA
Sbjct: 343 QGGYGAYNAYISAATRYAALGAPTLYDHPGSAYGRGGYYGSSQGMGNKKIFVGRLPQEAN 402
Query: 115 AEDLRRYFSRFGRILDVYVPK 135
EDLR YF +FGRI+D Y+PK
Sbjct: 403 TEDLRHYFGKFGRIVDAYIPK 423
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 43/134 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ S RG G++TF+SAD +N++ H LG T+ V ATPKE+ S G
Sbjct: 196 KERSSGRSRGFGYVTFSSADDAKNVLECEHVLGNRTLEVKIATPKEE------MKSQGS- 248
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
ATR IFV R+PQ RR+F
Sbjct: 249 -------KKATR-----------------------------IFVARIPQSVDESMFRRHF 272
Query: 123 SRFGRILDVYVPKR 136
+G I D+Y+PK
Sbjct: 273 EAYGEITDLYMPKE 286
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+PKD HRG GF+TFA + + +HE+ G V +D A P E D S G
Sbjct: 421 IPKDPKRSGHRGFGFVTFADEGVADRVARRSHEILGHEVAIDTAAPLEGD-------SGG 473
Query: 61 GY----GAYNAYISAAT 73
GY Y AY S T
Sbjct: 474 GYMEPMDLYGAYGSMRT 490
>gi|297598312|ref|NP_001045380.2| Os01g0945800 [Oryza sativa Japonica Group]
gi|57899379|dbj|BAD88026.1| RNA-binding like protein [Oryza sativa Japonica Group]
gi|215686359|dbj|BAG87620.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215706318|dbj|BAG93174.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674065|dbj|BAF07294.2| Os01g0945800 [Oryza sativa Japonica Group]
Length = 363
Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 102/141 (72%), Positives = 116/141 (82%), Gaps = 6/141 (4%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR--PVGRMS 58
MPK+ GSK HRGIGFITF SA+SV+++M D+HEL G+TVVVDRATPK+++ R P S
Sbjct: 123 MPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRGAS 182
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG---ESSQRIG-KKIFVGRLPQEAT 114
GGYGAYNAYISAATRYAALGAPTLYDHPGS YGRG SSQ +G KKIFVGRLPQEA
Sbjct: 183 QGGYGAYNAYISAATRYAALGAPTLYDHPGSAYGRGGYYGSSQGMGNKKIFVGRLPQEAN 242
Query: 115 AEDLRRYFSRFGRILDVYVPK 135
EDLR YF +FGRI+D Y+PK
Sbjct: 243 TEDLRHYFGKFGRIVDAYIPK 263
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 43/134 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ S RG G++TF+SAD +N++ H LG T+ V ATPKE+ S G
Sbjct: 36 KERSSGRSRGFGYVTFSSADDAKNVLECEHVLGNRTLEVKIATPKEE------MKSQGS- 88
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
ATR IFV R+PQ RR+F
Sbjct: 89 -------KKATR-----------------------------IFVARIPQSVDESMFRRHF 112
Query: 123 SRFGRILDVYVPKR 136
+G I D+Y+PK
Sbjct: 113 EAYGEITDLYMPKE 126
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+PKD HRG GF+TFA + + +HE+ G V +D A P E D S G
Sbjct: 261 IPKDPKRSGHRGFGFVTFADEGVADRVARRSHEILGHEVAIDTAAPLEGD-------SGG 313
Query: 61 GY----GAYNAYISAAT 73
GY Y AY S T
Sbjct: 314 GYMEPMDLYGAYGSMRT 330
>gi|218189712|gb|EEC72139.1| hypothetical protein OsI_05159 [Oryza sativa Indica Group]
Length = 864
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/150 (65%), Positives = 113/150 (75%), Gaps = 15/150 (10%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR--PVGRMS 58
MPK+ GSK HRGIGFITF SA+SV+++M D+HEL G+TVVVDRATPK+++ R P S
Sbjct: 123 MPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRGAS 182
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI-------------GKKIF 105
GGYGAYNAYISAATRYAALGAPTLYDHPGS YG S+ +I KKIF
Sbjct: 183 QGGYGAYNAYISAATRYAALGAPTLYDHPGSAYGSKSSATKITGGGYYGSSQGMGNKKIF 242
Query: 106 VGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
VGRLPQEA EDLR YF +FGRI+D Y+PK
Sbjct: 243 VGRLPQEANTEDLRHYFGKFGRIVDAYIPK 272
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 43/134 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ S RG G++TF+SAD +N++ H LG T+ V ATPKE+
Sbjct: 36 KERSSGRSRGFGYVTFSSADDAKNVLECEHVLGNRTLEVKIATPKEEM------------ 83
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ + S++ +IFV R+PQ RR+F
Sbjct: 84 ------------------------------KSQGSKK-ATRIFVARIPQSVDESMFRRHF 112
Query: 123 SRFGRILDVYVPKR 136
+G I D+Y+PK
Sbjct: 113 EAYGEITDLYMPKE 126
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD-----FRPVG 55
+PKD HRG GF+TFA + + +HE+ G V +D A P E D P+
Sbjct: 270 IPKDPKRSGHRGFGFVTFADEGVADRVARRSHEILGHEVAIDTAAPLEGDSGGGYMEPMD 329
Query: 56 RMSHGGYGAYNAY 68
+G YG+ Y
Sbjct: 330 L--YGAYGSMRTY 340
>gi|222619863|gb|EEE55995.1| hypothetical protein OsJ_04743 [Oryza sativa Japonica Group]
Length = 372
Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/150 (65%), Positives = 113/150 (75%), Gaps = 15/150 (10%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR--PVGRMS 58
MPK+ GSK HRGIGFITF SA+SV+++M D+HEL G+TVVVDRATPK+++ R P S
Sbjct: 123 MPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRGAS 182
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI-------------GKKIF 105
GGYGAYNAYISAATRYAALGAPTLYDHPGS YG S+ +I KKIF
Sbjct: 183 QGGYGAYNAYISAATRYAALGAPTLYDHPGSAYGSKSSATKITGGGYYGSSQGMGNKKIF 242
Query: 106 VGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
VGRLPQEA EDLR YF +FGRI+D Y+PK
Sbjct: 243 VGRLPQEANTEDLRHYFGKFGRIVDAYIPK 272
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 43/134 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ S RG G++TF+SAD +N++ H LG T+ V ATPKE+ M G
Sbjct: 36 KERSSGRSRGFGYVTFSSADDAKNVLECEHVLGNRTLEVKIATPKEE-------MKSQG- 87
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ +IFV R+PQ RR+F
Sbjct: 88 -----------------------------------SKKATRIFVARIPQSVDESMFRRHF 112
Query: 123 SRFGRILDVYVPKR 136
+G I D+Y+PK
Sbjct: 113 EAYGEITDLYMPKE 126
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+PKD HRG GF+TFA + + +HE+ G V +D A P E D S G
Sbjct: 270 IPKDPKRSGHRGFGFVTFADEGVADRVARRSHEILGHEVAIDTAAPLEGD-------SGG 322
Query: 61 GY----GAYNAYISAAT 73
GY Y AY S T
Sbjct: 323 GYMEPMDLYGAYGSMRT 339
>gi|297798166|ref|XP_002866967.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297312803|gb|EFH43226.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 380
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/153 (69%), Positives = 116/153 (75%), Gaps = 18/153 (11%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF----RPVGR 56
MPKD SK HRGIGFITF+SADSVE+LM DTH+LGG+TV VDRATPKEDD PV R
Sbjct: 122 MPKDHNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKEDDHPPRPPPVAR 181
Query: 57 MSH-------------GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR-IGK 102
MS GGYGAY+AYISAATRYAALGAPTLYD+P FYGRGE + R IG
Sbjct: 182 MSRPPVAVAGGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPAMFYGRGEPTTRGIGN 241
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
KIFVGRLPQEA+ +DLR YF RFGRI D Y+PK
Sbjct: 242 KIFVGRLPQEASVDDLREYFGRFGRIQDAYIPK 274
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG G++TFAS++ +N + H LG + V ATPKE+ +P +++
Sbjct: 36 KDRSTGRSRGFGYVTFASSEDAKNALKGEHFLGNRILEVKVATPKEEMRQPAKKVT---- 91
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+IFV R+P + D R +F
Sbjct: 92 ----------------------------------------RIFVARIPSSVSESDFRSHF 111
Query: 123 SRFGRILDVYVPK 135
R+G I D+Y+PK
Sbjct: 112 ERYGEITDLYMPK 124
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+PKD HRG GF+TFA + + +HE+ G V +D ATP ++
Sbjct: 272 IPKDPKRSGHRGFGFVTFAENGVADCVARRSHEICGQEVAIDSATPLDE 320
>gi|18419943|ref|NP_568011.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|238481137|ref|NP_001154290.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|15081787|gb|AAK82548.1| AT4g36960/C7A10_400 [Arabidopsis thaliana]
gi|23308345|gb|AAN18142.1| At4g36960/C7A10_400 [Arabidopsis thaliana]
gi|332661324|gb|AEE86724.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332661325|gb|AEE86725.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 379
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/152 (69%), Positives = 116/152 (76%), Gaps = 17/152 (11%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF----RPVGR 56
MPKD SK HRGIGFITF+SADSVE+LM DTH+LGG+TV VDRATPKEDD PV R
Sbjct: 122 MPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRATPKEDDHPPRPPPVAR 181
Query: 57 MSH------------GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR-IGKK 103
MS GGYGAY+AYISAATRYAALGAPTLYD+P +FYGRGE + R IG K
Sbjct: 182 MSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNK 241
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
IFVGRLPQEA+ +DLR YF RFG I D Y+PK
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPK 273
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 44/135 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG G++TFASA+ +N + H LG + V ATPKE+ +P +++
Sbjct: 36 KDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKVATPKEEMRQPAKKVT---- 91
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+IFV R+P + D R +F
Sbjct: 92 ----------------------------------------RIFVARIPSSVSESDFRSHF 111
Query: 123 SRFGRILDVYVPKRF 137
R+G I D+Y+PK +
Sbjct: 112 ERYGEITDLYMPKDY 126
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+PKD HRG GF+TFA + + +HE+ G V +D ATP ++
Sbjct: 271 IPKDPKRSGHRGFGFVTFAENGVADRVARRSHEICGQEVAIDSATPLDE 319
>gi|357133920|ref|XP_003568569.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Brachypodium
distachyon]
Length = 366
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 113/143 (79%), Gaps = 8/143 (5%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR--PVGRMS 58
MPK+ GSK HRGIGF+TF SA+ V+++M +THEL G+TVVVDRATPK++D R P R +
Sbjct: 123 MPKELGSKDHRGIGFVTFRSAECVDDVMKETHELDGTTVVVDRATPKDEDVRHPPRSRRA 182
Query: 59 ----HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI--GKKIFVGRLPQE 112
GGYG+YNAYI+AATRYAALG PTLYDHPG YGRG S++ + GKKIFVGRLPQE
Sbjct: 183 PVHGDGGYGSYNAYITAATRYAALGVPTLYDHPGQAYGRGYSNEPLVTGKKIFVGRLPQE 242
Query: 113 ATAEDLRRYFSRFGRILDVYVPK 135
A +DL YF RFGRI+D Y+PK
Sbjct: 243 ANTDDLWDYFGRFGRIVDAYIPK 265
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 43/135 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ S RG G++TF+S + +N++ H LG T+ V ATPKE+
Sbjct: 36 KDRSSGRSRGFGYVTFSSEEDAKNVVNCEHILGDRTLEVKIATPKEE------------- 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
S + +IFV R+PQ RR+F
Sbjct: 83 ------------------------------MRASGNKKATRIFVARIPQSVDESMFRRHF 112
Query: 123 SRFGRILDVYVPKRF 137
FG I+D+Y+PK
Sbjct: 113 QSFGEIIDLYMPKEL 127
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRM-SH 59
+PKD HRG GF+TFA + + +HE+ G V VD A P E G M S
Sbjct: 263 IPKDPKRSGHRGFGFVTFADDGVADRVARRSHEILGQEVAVDSAAPLEGGSSGSGYMESA 322
Query: 60 GGYGAYNAYISAATRYAALG 79
G YGAY +S +LG
Sbjct: 323 GPYGAYGPMLSYGHFSGSLG 342
>gi|388511899|gb|AFK44011.1| unknown [Lotus japonicus]
Length = 220
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 97/117 (82%), Gaps = 9/117 (7%)
Query: 28 MVDTHELGGSTVVVDRATPKEDDFRPVGRM---------SHGGYGAYNAYISAATRYAAL 78
M +THEL GSTVVVDRATPKEDDF+P+GRM S GGYGAYNAYISA TRYAAL
Sbjct: 1 MKETHELEGSTVVVDRATPKEDDFKPIGRMPQGGSMGRMSQGGYGAYNAYISATTRYAAL 60
Query: 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
GAPTLYD+PGS YGRGE ++ +GKKIFVG LPQEAT EDLR+YF RFG ILDVY+P+
Sbjct: 61 GAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEATTEDLRQYFGRFGHILDVYIPR 117
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+P+D HRG GF+TFA + + HE+ G V +D ATP +D
Sbjct: 115 IPRDAKRSGHRGFGFVTFAEDGVADRVARRPHEICGHQVAIDSATPLDD 163
>gi|326514108|dbj|BAJ92204.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525627|dbj|BAJ88860.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 363
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/141 (63%), Positives = 107/141 (75%), Gaps = 6/141 (4%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMS-- 58
MPK+ GSK HRGIGF+TF SA+ V+N+M + HE+ G+TVVVDRATPK+++ R R
Sbjct: 123 MPKELGSKEHRGIGFVTFRSAECVDNVMQENHEIDGTTVVVDRATPKDEEVRHPPRRGGA 182
Query: 59 --HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI--GKKIFVGRLPQEAT 114
GGYG+YNAYI+AATRYAALG PTLYDHPG YGRG ++ KKIFVGRLPQEA
Sbjct: 183 EREGGYGSYNAYITAATRYAALGVPTLYDHPGPAYGRGYLNEPPVSSKKIFVGRLPQEAN 242
Query: 115 AEDLRRYFSRFGRILDVYVPK 135
+DL YF RFGRI+D Y+PK
Sbjct: 243 TDDLWDYFGRFGRIVDAYIPK 263
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 43/135 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ S RG G++TF+S + +N++ H LG T+ V ATPKE + R G
Sbjct: 36 KDRSSGRSRGFGYVTFSSVEDAKNVVNSEHILGDRTLEVKIATPKE-EMRASGN------ 88
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
ATR IFV R+PQ RR+F
Sbjct: 89 -------KKATR-----------------------------IFVARIPQSVDESMFRRHF 112
Query: 123 SRFGRILDVYVPKRF 137
FG I D+Y+PK
Sbjct: 113 QSFGEITDLYMPKEL 127
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMS-H 59
+PKD HRG GF+TFA + + +HE+ G V VD A P E G M
Sbjct: 261 IPKDPKKSGHRGFGFVTFAEDGVADRVARRSHEILGQEVAVDSAAPVEGGPSRGGYMEPP 320
Query: 60 GGYGAYNAYISAATRYAALG 79
G YGAY +S +LG
Sbjct: 321 GPYGAYGPMMSYGQFSGSLG 340
>gi|255641298|gb|ACU20926.1| unknown [Glycine max]
gi|255642525|gb|ACU21526.1| unknown [Glycine max]
Length = 213
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 96/113 (84%), Gaps = 5/113 (4%)
Query: 28 MVDTHELGGSTVVVDRATPKEDDFRPVGRM-----SHGGYGAYNAYISAATRYAALGAPT 82
M +THELGGS VVVDRATPK+DDF+ +GRM + GGYGAYNAYISAATRYAALGAPT
Sbjct: 1 MSETHELGGSAVVVDRATPKDDDFKSIGRMPLPPPTLGGYGAYNAYISAATRYAALGAPT 60
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
LYD PG YGRG+ S+R KKIFVGRLP EAT++DLR+YF RFGRILDVYVP+
Sbjct: 61 LYDQPGPIYGRGDPSRRTSKKIFVGRLPPEATSDDLRQYFGRFGRILDVYVPR 113
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRM--- 57
+P+D HRG GF+TFA + + +HE+ G V +D ATP DD P G
Sbjct: 111 VPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPV-DDAGPSGNFMMN 169
Query: 58 ---SHGGYGA 64
S GGYG
Sbjct: 170 SMESFGGYGG 179
>gi|414878726|tpg|DAA55857.1| TPA: hypothetical protein ZEAMMB73_809994 [Zea mays]
Length = 209
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 92/111 (82%), Gaps = 3/111 (2%)
Query: 28 MVDTHELGGSTVVVDRATPKEDDFR-PVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 86
M ++HEL G+TVVVDRATPKE+D R P R S GGYGAYNAYISAATRYA LGAPTLYDH
Sbjct: 1 MQESHELDGTTVVVDRATPKEEDVRYPPSRPSQGGYGAYNAYISAATRYATLGAPTLYDH 60
Query: 87 PGSFYGRG--ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
PGS YGRG SSQ +GKKIFVGRLPQEA +DLR YF RFGRI+D Y+PK
Sbjct: 61 PGSAYGRGYYGSSQAVGKKIFVGRLPQEANTDDLRHYFGRFGRIVDAYIPK 111
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD 50
+PKD HRG GF+TFA E + +HE+ G V +D A P E+D
Sbjct: 109 IPKDPKRSGHRGFGFVTFADEGVAERVSRRSHEILGHEVAIDTAAPLEND 158
>gi|148905888|gb|ABR16106.1| unknown [Picea sitchensis]
Length = 409
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 108/180 (60%), Gaps = 45/180 (25%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
MPK++GSK HRGIGFITF S+ SV+ LM +TH LGG+T+ VDRATPKE+ + + G
Sbjct: 125 MPKEKGSKGHRGIGFITFESSGSVDRLMSETHMLGGATIAVDRATPKEESTKQWAKPVSG 184
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHP------------GSFYGRGES------------ 96
GYGAYNAYI+AATRY ALG+ TLYDHP G YG G S
Sbjct: 185 GYGAYNAYINAATRYGALGSATLYDHPSSGFRDGYASEVGGGYGSGNSWPPHGAGGMIGG 244
Query: 97 ---------------------SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+ +GKKIFVGRL QEATA DLRRYFS FG ++DVYVPK
Sbjct: 245 SSYGMADRGAGYGPGSFSGPPPRGMGKKIFVGRLSQEATAGDLRRYFSNFGTVVDVYVPK 304
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 44/134 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG G+ TF+S + + + H L G + V ATPKE+
Sbjct: 39 RDRATGRSRGFGYATFSSVEDAKKALDSEHFLNGRALEVKVATPKEE------------- 85
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ AP S++I +IFV R+P T + R+YF
Sbjct: 86 ---------------MKAP---------------SKKI-TRIFVARIPPSVTEDAFRKYF 114
Query: 123 SRFGRILDVYVPKR 136
FG I D+Y+PK
Sbjct: 115 EEFGNIEDLYMPKE 128
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF 51
+PKD HRG GF+TFA + + +HE+ G V +D ATP +DD
Sbjct: 302 VPKDARRSGHRGFGFVTFAEDGVADRVSRRSHEILGQQVAIDSATPPDDDI 352
>gi|4006877|emb|CAB16795.1| RNA-binding like protein [Arabidopsis thaliana]
gi|7270645|emb|CAB80362.1| RNA-binding like protein [Arabidopsis thaliana]
Length = 306
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/182 (53%), Positives = 112/182 (61%), Gaps = 49/182 (26%)
Query: 3 KDQGSKAHRGIGFITFASAD--------------------------------SVENLMVD 30
KD+ + RG G++TFASA+ SVE+LM D
Sbjct: 36 KDRSTGRSRGFGYVTFASAEDAKEEMRQPAKKVTRIFVARIPSSVSESDFRNSVEDLMED 95
Query: 31 THELGGSTVVVDRATPKEDDFRP----VGRMSH------------GGYGAYNAYISAATR 74
TH+LGG+TV VDRATPKEDD P V RMS GGYGAY+AYISAATR
Sbjct: 96 THDLGGTTVAVDRATPKEDDHPPRPPPVARMSRPPVAIAGGFGAPGGYGAYDAYISAATR 155
Query: 75 YAALGAPTLYDHPGSFYGRGESSQR-IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
YAALGAPTLYD+P +FYGRGE + R IG KIFVGRLPQEA+ +DLR YF RFG I D Y+
Sbjct: 156 YAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYI 215
Query: 134 PK 135
PK
Sbjct: 216 PK 217
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+PKD HRG GF+TFA + + +HE+ G V +D ATP ++
Sbjct: 215 IPKDPKRSGHRGFGFVTFAENGVADRVARRSHEICGQEVAIDSATPLDE 263
>gi|168067843|ref|XP_001785814.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662538|gb|EDQ49378.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 382
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/149 (57%), Positives = 99/149 (66%), Gaps = 14/149 (9%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
MPKDQGSKAHRGIGF+TF + +SV+NLM +THELGGST+ VDRATPKED + GR HG
Sbjct: 116 MPKDQGSKAHRGIGFVTFENPESVDNLMNETHELGGSTIAVDRATPKEDGVKTWGRGFHG 175
Query: 61 G------------YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS--QRIGKKIFV 106
G YGAY Y +AA G YD+ GS +G + +G KIFV
Sbjct: 176 GNQNSASNAGSGAYGAYGVYTNAARFGGLGGGFGAYDYSGSGFGSPPIPPLRGLGTKIFV 235
Query: 107 GRLPQEATAEDLRRYFSRFGRILDVYVPK 135
GRLP EA AEDLRRYF+ FGRI DVYVPK
Sbjct: 236 GRLPPEANAEDLRRYFNNFGRISDVYVPK 264
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+G+ RG G++TFA+ + + + H L G + V ATPKE+ P +++
Sbjct: 30 KDRGTGRSRGFGYVTFAAVEDAKKAVSTQHSLNGRMLEVKVATPKEEMKPPAKKIT---- 85
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++FV R+P T E R YF
Sbjct: 86 ----------------------------------------RVFVARIPPSVTDEAFRSYF 105
Query: 123 SRFGRILDVYVPK 135
++G + D Y+PK
Sbjct: 106 EKYGTLTDAYMPK 118
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+PKD +HRG GF+TF+ + E + + HE+ G + VDRA P+++
Sbjct: 262 VPKDAKKTSHRGFGFVTFSDEGAAERVALRNHEILGHQIAVDRAAPQDE 310
>gi|167999759|ref|XP_001752584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696115|gb|EDQ82455.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 380
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 97/152 (63%), Gaps = 17/152 (11%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
MPKDQGSKAHRGIGF+TF +SV+ LM +THELGGST+ VDRATPKED + GR HG
Sbjct: 118 MPKDQGSKAHRGIGFVTFEIPESVDRLMNETHELGGSTIAVDRATPKEDGVKTWGRGFHG 177
Query: 61 G------------YGAYNAYISAATRYAALGAPTLYDHP--GSFYGRGESS---QRIGKK 103
G YGAY Y + A G YD+P GSF G + +G K
Sbjct: 178 GNQNSGSNAGSGSYGAYGVYTNTARFGGLGGGFGAYDYPVSGSFGSGGPPVPPLRGLGTK 237
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
IFVGRLP EA AEDLRRYF+ FGRI DVYVPK
Sbjct: 238 IFVGRLPPEANAEDLRRYFNNFGRISDVYVPK 269
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+G+ RG G++TFA+ + + + H L G + V ATPKE+ P +++
Sbjct: 32 KDRGTGRSRGFGYVTFATVEDAKKTVSTQHSLNGRMLEVKVATPKEEMKPPAKKIT---- 87
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++FV R+P T E R YF
Sbjct: 88 ----------------------------------------RVFVARIPPSVTDEAFRSYF 107
Query: 123 SRFGRILDVYVPK 135
++G + D Y+PK
Sbjct: 108 EKYGTLTDAYMPK 120
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+PKD +HRG GF+TF+ + E + + HE+ G + VDRA P+++
Sbjct: 267 VPKDAKKTSHRGFGFVTFSDEGAAERVALRNHEILGHQIAVDRAAPQDE 315
>gi|326522138|dbj|BAK04197.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 371
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 100/144 (69%), Gaps = 9/144 (6%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFR-PVGR--- 56
MPK+ GSK HRGIGFITF SA+SV+++M ++HEL G+T+ VD ATPK++D R P R
Sbjct: 125 MPKEHGSKGHRGIGFITFQSAESVDSIMQESHELDGTTLHVDHATPKDEDTRHPPSRAFQ 184
Query: 57 ---MSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG--ESSQRIGKKIFVGRLPQ 111
GYGAY+ YI+A T + A+G PT YDH G YGRG S Q IGKKIFVG LPQ
Sbjct: 185 DGGDYGLGYGAYDVYIAATTMFGAVGPPTRYDHQGPAYGRGYSGSPQGIGKKIFVGGLPQ 244
Query: 112 EATAEDLRRYFSRFGRILDVYVPK 135
A +DLR YF FG + DV++P+
Sbjct: 245 GAKKDDLRNYFGGFGGVADVFIPR 268
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 41/134 (30%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ S RG G++TF+SAD V+N++ H L + V ATP+E+
Sbjct: 36 KDRLSGRSRGFGYVTFSSADDVKNVLEFKHFLRNRALEVKIATPREE------------- 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ P + +IFVGR+PQ A RR+F
Sbjct: 83 --------------------MKPQP--------QGTKTATRIFVGRIPQSADESMFRRHF 114
Query: 123 SRFGRILDVYVPKR 136
FG I+D+Y+PK
Sbjct: 115 EAFGEIIDLYMPKE 128
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD 50
+P+D HRG GF+TF+ +N+ +HE+ G V+VD P D
Sbjct: 266 IPRDPKGSGHRGFGFVTFSDEGVADNIADKSHEILGCKVIVDITAPPRGD 315
>gi|302755192|ref|XP_002961020.1| hypothetical protein SELMODRAFT_164019 [Selaginella moellendorffii]
gi|302767142|ref|XP_002966991.1| hypothetical protein SELMODRAFT_144531 [Selaginella moellendorffii]
gi|300164982|gb|EFJ31590.1| hypothetical protein SELMODRAFT_144531 [Selaginella moellendorffii]
gi|300171959|gb|EFJ38559.1| hypothetical protein SELMODRAFT_164019 [Selaginella moellendorffii]
Length = 395
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/161 (54%), Positives = 96/161 (59%), Gaps = 31/161 (19%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
MPKDQGSKAHRGIGF+T+ DSVE LM THEL GST+ VDRATPK G+
Sbjct: 129 MPKDQGSKAHRGIGFVTYEDPDSVEKLMGKTHELAGSTIAVDRATPKF-----WGKSYPS 183
Query: 61 GYGAYNAYISAATRYAALG------APTLYDHP------------GSFYG------RGES 96
YG Y Y +AA R+ A G A YD+P G YG S
Sbjct: 184 IYGPYGIYTNAAARFGAFGTHFGSSAFGAYDYPPALATEIAGSGIGGAYGPVSAPMNISS 243
Query: 97 SQR--IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
SQ IGKKIFVGRLP +ATAEDLRRYF FGR+LDVYVPK
Sbjct: 244 SQNRGIGKKIFVGRLPLDATAEDLRRYFGNFGRLLDVYVPK 284
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG G++TF S++ E ++ H L G + V ATPKE+ +P
Sbjct: 45 KDRSTGRSRGFGYVTFTSSEDAEKALLAQHSLSGRILEVKVATPKEEMLKP--------- 95
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
TR +FV R+P + R YF
Sbjct: 96 --------KVTR-----------------------------VFVARIPPSVNDDTFRNYF 118
Query: 123 SRFGRILDVYVPK 135
++GRI D Y+PK
Sbjct: 119 EKYGRITDAYMPK 131
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+PKD +HRG GF+TFA + + + +HEL G + VDRATP+++
Sbjct: 282 VPKDAKKLSHRGFGFVTFADESVADRVALRSHELLGVQIAVDRATPQDE 330
>gi|388511807|gb|AFK43965.1| unknown [Lotus japonicus]
Length = 191
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/82 (79%), Positives = 73/82 (89%)
Query: 54 VGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEA 113
+GRMS GGYGAYNAYISA TRYAALGAPTLYD+PGS YGRGE ++ +GKKIFVG LPQEA
Sbjct: 7 MGRMSQGGYGAYNAYISATTRYAALGAPTLYDNPGSVYGRGEPAREVGKKIFVGHLPQEA 66
Query: 114 TAEDLRRYFSRFGRILDVYVPK 135
T EDLR+YF RFG ILDVY+P+
Sbjct: 67 TTEDLRQYFGRFGHILDVYIPR 88
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+P+D HRG GF+TFA + + HE+ G V +D ATP +D
Sbjct: 86 IPRDAKRSGHRGFGFVTFAEDGVADRVARRPHEICGHQVAIDSATPLDD 134
>gi|218196677|gb|EEC79104.1| hypothetical protein OsI_19737 [Oryza sativa Indica Group]
Length = 297
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 93/148 (62%), Gaps = 15/148 (10%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK-EDDFRPVGRMSH 59
MPK+ SK+HRGIGFITF SA+ V+N+M +THEL G+TV VDRATPK + P+ ++
Sbjct: 41 MPKELRSKSHRGIGFITFRSAECVDNIMQETHELDGTTVAVDRATPKVVSNTHPL--FNY 98
Query: 60 GGYGAYNAYISA---ATRYAALGAP-------TLYDHPGSFYGRGE--SSQRIGKKIFVG 107
A Y +A R LG P T YDHPG YGRG S GKKIFVG
Sbjct: 99 NSVDALCIYDNAFFPTNRMKMLGTPQGELFRATSYDHPGPAYGRGHIGGSLGTGKKIFVG 158
Query: 108 RLPQEATAEDLRRYFSRFGRILDVYVPK 135
RLPQEA +DL YF RFGRI+D Y+PK
Sbjct: 159 RLPQEANTDDLWDYFGRFGRIVDAYIPK 186
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD-----FRPVG 55
+PKD H G GF+TFA + + +HE+ G V VD A P E P
Sbjct: 184 IPKDPKRSGHGGFGFVTFADDGVADRVAQRSHEILGQEVAVDTAEPLEGGSGGGYLEPA- 242
Query: 56 RMSHGGYGAYNAYISAATRYAALGAPTLYD 85
++G YGAY + + +LG YD
Sbjct: 243 -EAYGPYGAYGSLLPYGRFSGSLGYDYGYD 271
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+IFV R+PQ RR+F FG I+D+Y+PK
Sbjct: 11 RIFVARIPQSVDESKFRRHFEAFGEIIDLYMPKEL 45
>gi|224285299|gb|ACN40374.1| unknown [Picea sitchensis]
Length = 520
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 97/183 (53%), Gaps = 49/183 (26%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
MPKDQ +K HRGIGF+T+ +A+SV+ +M ++HEL GST+ VDRATPKE+ R R G
Sbjct: 125 MPKDQTTKQHRGIGFVTYENAESVDEVMSESHELAGSTIAVDRATPKEETGRVWERNFPG 184
Query: 61 GYGAYNAYISAATRYAALGAPTL--YDHPGS-----------FYGRGE------------ 95
G +N++++ T + YD PGS YGR
Sbjct: 185 ASGVFNSHVN-TTHFGTFDVSAFGGYDFPGSDRAAKGNTYGGNYGRNNLWRAGPPAPQVG 243
Query: 96 -----------------------SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVY 132
+ R+G+KIFVGR+P EATAEDL+ YFS+FG++LD Y
Sbjct: 244 GPSPVIPSIDPSAMNYGSTDSNFAPSRMGRKIFVGRIPVEATAEDLQLYFSQFGQVLDAY 303
Query: 133 VPK 135
+PK
Sbjct: 304 LPK 306
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 39/135 (28%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+PKD +HRG GF+TFA + E++ HE+ G + VDRA+P ++
Sbjct: 304 LPKDAKKISHRGFGFVTFAEESTAEHVSQRRHEILGHLIAVDRASPLDE----------- 352
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
+ YA G +GKKIF+GR+P EAT EDLR
Sbjct: 353 --------TPSVGVYAPSG--------------------LGKKIFIGRIPVEATTEDLRL 384
Query: 121 YFSRFGRILDVYVPK 135
YFS++GRILDVY+PK
Sbjct: 385 YFSQYGRILDVYLPK 399
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 55/133 (41%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ S RG G++TF+S E M H L G T+ V ATPK D+ RP
Sbjct: 39 KDRVSGRSRGFGYVTFSSDGGAEKAMAGQHVLQGRTLEVKIATPK-DEMRP--------- 88
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+S++I +IFV R+ T E R YF
Sbjct: 89 ---------------------------------TSRKI-TRIFVARISPTVTDEMFRSYF 114
Query: 123 SRFGRILDVYVPK 135
++G ILD Y+PK
Sbjct: 115 EKYGSILDAYMPK 127
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+PKD +HRG GF+TFA + E++ HE+ G + VDRA P ++
Sbjct: 397 LPKDAKKISHRGFGFVTFAEESAAEHVAQKAHEILGHRIAVDRAAPLDE 445
>gi|384254104|gb|EIE27578.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 412
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 86/157 (54%), Gaps = 23/157 (14%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKE-------DDFRP 53
MPKD ++HRGIGF+TFA+ADSVE +M H + G + +DRATPK+ +DF P
Sbjct: 165 MPKDATKQSHRGIGFVTFANADSVEAVMSSPHSMNGQELAIDRATPKDKPSDSAGNDFNP 224
Query: 54 VGRMSHGGYGAYNAY--------ISAATRYAALGAPTLYDHPGS------FYGRGES-SQ 98
+++G G AY + AA A G GS G G S
Sbjct: 225 YQAVANGN-GRTTAYSSGGGSSSVVAAFEGANGGQAANSGGSGSGELFQPMRGDGASIDT 283
Query: 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
R G +IFVG+L +E T D++ YF+RFG ++DVY+P+
Sbjct: 284 RSGPRIFVGKLNKETTENDVKEYFTRFGYVMDVYLPR 320
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IFV R+P R+YF ++G + D Y+PK
Sbjct: 135 RIFVARIPLSVNDAQFRQYFEQYGSVQDAYMPK 167
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 1 MPKDQGSKA-HRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDD 50
+P+D+ +++ HRG GF+TF + +V + H++ GS V +D A P+ ++
Sbjct: 318 LPRDKVNRSEHRGFGFVTFETDGAVLRIHAHGQHQIKGSVVAIDSAVPRREE 369
>gi|302838536|ref|XP_002950826.1| hypothetical protein VOLCADRAFT_43575 [Volvox carteri f.
nagariensis]
gi|300263943|gb|EFJ48141.1| hypothetical protein VOLCADRAFT_43575 [Volvox carteri f.
nagariensis]
Length = 303
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD--FRPVGRMS 58
MPKD + +RGIGF+TFAS DSVE +M H + G + +DRATPKE+ + +
Sbjct: 117 MPKDHSKQGYRGIGFVTFASPDSVEKVMAVKHWMNGHEIAIDRATPKEEPAALKNIFARL 176
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDL 118
G G ++ + A A +D G+ YG G G +IF+G+L ++ D+
Sbjct: 177 PMGPGQRRSFDNEAGGGLARFGGGSWDVLGAEYGHGAGGA--GPRIFIGKLTKDTGEADV 234
Query: 119 RRYFSRFGRILDVYVPK 135
+ YF RFG ++DVY+PK
Sbjct: 235 KEYFMRFGYVMDVYLPK 251
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+GE S +IFV R+P T ++YF FG++ D Y+PK
Sbjct: 77 KGEPSPPRTTRIFVARIPPSVTESQFKQYFEGFGKLQDAYMPK 119
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 1 MPKDQGSKA-HRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47
+PK + +KA HRG GF+TF + +++ ++ H L GST+ +D A PK
Sbjct: 249 LPKAKDNKAEHRGFGFVTFETDAAIQRVVSHGQHRLKGSTIAIDIAMPK 297
>gi|159479752|ref|XP_001697954.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158274052|gb|EDO99837.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 316
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED----------- 49
MPKD + +RGIGF+TFAS DSVE +M H + G + +DRATPKE+
Sbjct: 122 MPKDHSKQGYRGIGFVTFASPDSVEKVMAVKHWMNGHEIAIDRATPKEEPTALKNIFARL 181
Query: 50 -DFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGR 108
D +G + ++A+ +A G +L ++ R G +IF+G+
Sbjct: 182 PDLNTLG--AAAAVQQMMQAAASASAASAAGRRSLDSTLKRLENPAIANARAGPRIFIGK 239
Query: 109 LPQEATAEDLRRYFSRFGRILDVYVPK 135
L ++ + D++ YF RFG ++DVY+PK
Sbjct: 240 LTKDTSEADVKDYFMRFGYVMDVYLPK 266
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 1 MPKDQGSKA-HRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDD 50
+PK + +KA HRG GF+TF + +++ ++ H L GST+ +D A PK +D
Sbjct: 264 LPKAKDNKAEHRGFGFVTFETDAAIQRVVSHGQHRLKGSTIAIDIAMPKVED 315
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IFV R+P T R+YF FG++ D Y+PK
Sbjct: 92 RIFVARIPPSVTEAQFRQYFEGFGKLQDAYMPK 124
>gi|122720941|gb|ABM66456.1| RNA-binding protein [Brassica juncea]
Length = 179
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKE 48
MPKD SK HRGIGFITFA++DSVE+LM DTH+LGG+TV VDRATPKE
Sbjct: 104 MPKDHNSKQHRGIGFITFATSDSVEDLMEDTHDLGGTTVAVDRATPKE 151
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 44/133 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG G++TFAS+ + + H LG + V ATPKE+ +P +++
Sbjct: 18 KDRSTGRSRGFGYVTFASSQDAKEALKGEHFLGNRILEVKVATPKEEMRQPAKKVT---- 73
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+IFV R+P + D RR+F
Sbjct: 74 ----------------------------------------RIFVARIPPSVSESDFRRHF 93
Query: 123 SRFGRILDVYVPK 135
++G I D+Y+PK
Sbjct: 94 EKYGEITDLYMPK 106
>gi|388505314|gb|AFK40723.1| unknown [Medicago truncatula]
Length = 165
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 42/53 (79%)
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+YD P S YGRGE ++ I KKIFVGRLP EAT EDLR YF RFG ILDVY+P+
Sbjct: 1 MYDRPSSIYGRGEPARGISKKIFVGRLPPEATTEDLRLYFGRFGHILDVYIPR 53
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
+P+D HRG GF+TFA + + + HE+ G V +D A P ++
Sbjct: 51 IPRDVKRPGHRGFGFVTFADSGVADRVSRRPHEICGQEVAIDSAAPLDE 99
>gi|297724061|ref|NP_001174394.1| Os05g0376175 [Oryza sativa Japonica Group]
gi|255676319|dbj|BAH93122.1| Os05g0376175 [Oryza sativa Japonica Group]
Length = 134
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 41/48 (85%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKE 48
MPK+ SK+HRGIGFITF SA+ V+N+M +THEL G+TV VDRATPK+
Sbjct: 81 MPKELRSKSHRGIGFITFRSAECVDNIMQETHELDGTTVAVDRATPKK 128
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 48/123 (39%), Gaps = 45/123 (36%)
Query: 15 FITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATR 74
ITF +S + ++ D H LG T+ V ATPKE+ R G I ATR
Sbjct: 8 LITFI--NSSQKVVKDEHILGNRTLEVKIATPKEE-MRAPG-------------IKKATR 51
Query: 75 YAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
IFV R+PQ RR+F FG I+D+Y+P
Sbjct: 52 -----------------------------IFVARIPQSVDESKFRRHFEAFGEIIDLYMP 82
Query: 135 KRF 137
K
Sbjct: 83 KEL 85
>gi|307110322|gb|EFN58558.1| hypothetical protein CHLNCDRAFT_140687 [Chlorella variabilis]
Length = 619
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMS 58
MPKD + HRGIGF+T++S +SVE +M TH L G+ + +DRATPKE GR+S
Sbjct: 106 MPKDPSKQGHRGIGFVTYSSPESVELVMSQTHVLNGNEIAIDRATPKEKTTLLPGRLS 163
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 32/42 (76%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
G +S R G +IF+G+L ++ + +D++ +F RFG +LDVY+P+
Sbjct: 468 GPASARAGPRIFIGKLNKDTSEQDVKDHFMRFGFVLDVYLPR 509
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 1 MPKDQGSK-AHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDF 51
+P+D+ +K HRG GF+TF + +++ ++ H + GS V +D A P++++
Sbjct: 507 LPRDKNNKREHRGFGFVTFETEAAIQRVVAHGPHHIKGSIVAIDSAVPRQEEV 559
>gi|297604415|ref|NP_001055379.2| Os05g0376000 [Oryza sativa Japonica Group]
gi|255676318|dbj|BAF17293.2| Os05g0376000 [Oryza sativa Japonica Group]
Length = 345
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 4/64 (6%)
Query: 47 KEDDFR-PVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR---GESSQRIGK 102
K++D R P R+ GGYGAYNAYI+AATRYAALG PT YDHPG YG S + +G+
Sbjct: 207 KDEDVRHPPRRVVQGGYGAYNAYITAATRYAALGTPTSYDHPGPAYGNRVAQRSHEILGQ 266
Query: 103 KIFV 106
++ V
Sbjct: 267 EVAV 270
>gi|325185730|emb|CCA20211.1| conserved unknown protein putative [Albugo laibachii Nc14]
Length = 465
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 61/133 (45%), Gaps = 30/133 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ S RG GF+TFA ++ ++ ++H + G TV V RA P+
Sbjct: 135 KDKFSGQPRGFGFVTFADVAVLDRVLEESHTIDGRTVEVKRAIPR--------------- 179
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI--GKKIFVGRLPQEATAEDLRR 120
+ S + + GA +GRG S I KK+FVG LP T +D RR
Sbjct: 180 ---DKTASGPSDVRSSGA----------HGRGNSGGVITESKKVFVGGLPPSVTEQDFRR 226
Query: 121 YFSRFGRILDVYV 133
YF FGRI D V
Sbjct: 227 YFEEFGRITDAVV 239
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKE 48
D+ ++ RG GF+TF +V ++ THEL G V + RA PKE
Sbjct: 242 DRETQRSRGFGFVTFEEEGAVAEVISKTHELHGKVVEIKRAEPKE 286
>gi|414878723|tpg|DAA55854.1| TPA: hypothetical protein ZEAMMB73_809994, partial [Zea mays]
Length = 176
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 43/134 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ S RG G++TFASAD +N++ H LG T+ V ATPKE+
Sbjct: 36 KERSSGRSRGFGYVTFASADDAKNVLDCEHVLGSRTLEVKIATPKEE------------- 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
S T+ A +IFV R+PQ RR+F
Sbjct: 83 -----MKSQGTKKAT-------------------------RIFVARIPQSVDESMFRRHF 112
Query: 123 SRFGRILDVYVPKR 136
FG ILD+Y+PK
Sbjct: 113 EAFGEILDLYMPKE 126
>gi|356509793|ref|XP_003523630.1| PREDICTED: DAZ-associated protein 1-like [Glycine max]
Length = 384
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRM-SHGGY 62
D+ +++ RG GF+TF+ + + + DTH + G TV V +A P+ + + + S GG
Sbjct: 44 DRTTRSPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQHQHQNPLQSRGGG 103
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
YN + DH + R KKIFVG LP + E+ + YF
Sbjct: 104 YYYNNNNNNNDDNNNNSNDYCSDH----------NVRT-KKIFVGGLPAGISEEEFKNYF 152
Query: 123 SRFGRILDVYV 133
RFGRI DV V
Sbjct: 153 ERFGRITDVVV 163
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDD 50
RG GFITF S +SV+N+MV + H+L G V V RA PKE +
Sbjct: 173 RGFGFITFESEESVQNVMVKSFHDLNGRQVEVKRAVPKEGN 213
>gi|356552729|ref|XP_003544715.1| PREDICTED: uncharacterized protein LOC100788515 [Glycine max]
Length = 478
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA + E +++D H + G TV +A P+ DD + + R S
Sbjct: 39 RDRTTGRARGFGFVVFADPSAAERVIMDKHIIDGRTVEAKKAVPR-DDQQTINRQS---- 93
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
GS +G S R KKIFVG LP T D ++YF
Sbjct: 94 -------------------------GSIHGS-PSPGRT-KKIFVGGLPSTITESDFKKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 DQFGTIADVVV 137
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKE 185
>gi|356501604|ref|XP_003519614.1| PREDICTED: uncharacterized protein LOC100814628 [Glycine max]
Length = 477
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA + E +++D H + G TV +A P++D
Sbjct: 39 RDRTTGRARGFGFVVFADPSAAERVIMDKHIIDGRTVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
T+ GS +G + KKIFVG LP T D ++YF
Sbjct: 87 ------------------QTINRQTGSIHGSPSPGRT--KKIFVGGLPSTITESDFKKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 DQFGTITDVVV 137
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKE 185
>gi|414883901|tpg|DAA59915.1| TPA: hypothetical protein ZEAMMB73_814821 [Zea mays]
Length = 448
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA A E + +D H + G V +A P++D
Sbjct: 40 RDRSTGRARGFGFVVFADAAVAERVTMDKHTIDGRMVEAKKAVPRDDH------------ 87
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I + + ++ G+P G G + +KIFVG LP T D RRYF
Sbjct: 88 -----SIVSKSNGSSTGSP----------GPGRT-----RKIFVGGLPSSVTEADFRRYF 127
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 128 EQFGIITDVVV 138
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
D ++ RG GFIT+ S D+V+ + + HEL G V V RA PKE PV R
Sbjct: 141 DHNTQRPRGFGFITYDSEDAVDKALHKSFHELNGKMVEVKRAVPKEQSPGPVVR 194
>gi|242043256|ref|XP_002459499.1| hypothetical protein SORBIDRAFT_02g005620 [Sorghum bicolor]
gi|241922876|gb|EER96020.1| hypothetical protein SORBIDRAFT_02g005620 [Sorghum bicolor]
Length = 455
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA E + +D H + G V +A P++D
Sbjct: 46 RDRSTGRARGFGFVVFADPAVAERVTMDKHMIDGRMVEAKKAVPRDDH------------ 93
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I + + +++G+P G G + +KIFVG LP T D RRYF
Sbjct: 94 -----SIVSKSNASSIGSP----------GPGRT-----RKIFVGGLPSNVTEADFRRYF 133
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 134 EQFGVITDVVV 144
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
D ++ RG GFIT+ S D+V+ + + HEL G V V RA PKE PV R
Sbjct: 147 DHNTQRPRGFGFITYDSEDAVDKALHKSFHELNGKMVEVKRAVPKEQSPGPVVR 200
>gi|242047760|ref|XP_002461626.1| hypothetical protein SORBIDRAFT_02g005670 [Sorghum bicolor]
gi|241925003|gb|EER98147.1| hypothetical protein SORBIDRAFT_02g005670 [Sorghum bicolor]
Length = 453
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA E + +D H + G V +A P++D
Sbjct: 44 RDRSTGRARGFGFVVFADPAVAERVTMDKHMIDGRMVEAKKAVPRDDH------------ 91
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I + + +++G+P G G + +KIFVG LP T D RRYF
Sbjct: 92 -----SIVSKSNASSIGSP----------GPGRT-----RKIFVGGLPSNVTEADFRRYF 131
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 132 EQFGVITDVVVMYDHNTQRPRGFGFI 157
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
D ++ RG GFIT+ S D+V+ + + HEL G V V RA PKE PV R
Sbjct: 145 DHNTQRPRGFGFITYDSEDAVDKALHKSFHELNGKMVEVKRAVPKEQSPGPVVR 198
>gi|414591910|tpg|DAA42481.1| TPA: hypothetical protein ZEAMMB73_522608 [Zea mays]
Length = 449
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA A E + + H + G V +A P++D
Sbjct: 40 RDRSTGRARGFGFVVFADAAVAERVTTEKHMIDGRMVEAKKAVPRDDH------------ 87
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I + +++G+P G G + +KIFVG LP T D RRYF
Sbjct: 88 -----SIVTKSNASSIGSP----------GPGRT-----RKIFVGGLPSNVTEADFRRYF 127
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 128 EQFGVITDVVV 138
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
D ++ RG GFIT+ S D+V+ + + HEL G V V RA PKE P R
Sbjct: 141 DHNTQRPRGFGFITYDSEDAVDKALHKSFHELNGKMVEVKRAVPKEQSPGPAAR 194
>gi|195624752|gb|ACG34206.1| RNA-binding protein [Zea mays]
Length = 469
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA A E + ++ H + G V +A P++D
Sbjct: 41 RDRSTGRARGFGFVVFADATVAERVTIEKHMIDGRMVEAKKAVPRDDH------------ 88
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I + + +++G+P G G + +KIFVG LP T D R YF
Sbjct: 89 -----SIVSKSNTSSIGSP----------GPGRT-----RKIFVGGLPSNVTEADFRGYF 128
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 129 EQFGVITDVVVMYDHNTQRPRGFGFI 154
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHG 60
D ++ RG GFIT+ S D+V+ + + HEL G V V +A PKE PV R G
Sbjct: 142 DHNTQRPRGFGFITYDSEDAVDKALHKSFHELNGKMVEVKKAVPKEQSPGPVARSPAG 199
>gi|219363315|ref|NP_001136724.1| uncharacterized protein LOC100216861 [Zea mays]
gi|194696774|gb|ACF82471.1| unknown [Zea mays]
gi|414883906|tpg|DAA59920.1| TPA: RNA-binding protein [Zea mays]
Length = 469
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA A E + ++ H + G V +A P++D
Sbjct: 41 RDRSTGRARGFGFVVFADATVAERVTIEKHMIDGRMVEAKKAVPRDDH------------ 88
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I + + +++G+P G G + +KIFVG LP T D R YF
Sbjct: 89 -----SIVSKSNTSSIGSP----------GPGRT-----RKIFVGGLPSNVTEADFRGYF 128
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 129 EQFGVITDVVVMYDHNTQRPRGFGFI 154
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHG 60
D ++ RG GFIT+ S D+V+ + + HEL G V V +A PKE PV R G
Sbjct: 142 DHNTQRPRGFGFITYDSEDAVDKALHKSFHELNGKMVEVKKAVPKEQSPGPVARSPAG 199
>gi|449463715|ref|XP_004149577.1| PREDICTED: uncharacterized protein LOC101220541 [Cucumis sativus]
gi|449517233|ref|XP_004165650.1| PREDICTED: uncharacterized protein LOC101224873 [Cucumis sativus]
Length = 480
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 63/165 (38%), Gaps = 40/165 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA E +++D H + G TV +A PK DD + R S
Sbjct: 39 RDRTTGRARGFGFVVFADPGVAERVILDKHVIDGRTVEAKKAVPK-DDQNMLNRSS---- 93
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
GS +G S + KKIFVG L T D ++YF
Sbjct: 94 -------------------------GSIHGSPSSGRT--KKIFVGGLASTVTEADFQKYF 126
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSKVSRNL 159
+FG I DV V P+ F F C K L
Sbjct: 127 DQFGTITDVVVMYDHSTQRPRGFGFITYDSEECVDRVLHKTFHEL 171
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S + V+ ++ T HEL G V V RA PKE
Sbjct: 140 DHSTQRPRGFGFITYDSEECVDRVLHKTFHELNGKMVEVKRAIPKE 185
>gi|224129796|ref|XP_002320673.1| predicted protein [Populus trichocarpa]
gi|222861446|gb|EEE98988.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRP-VGRMSHGG 61
KDQ +K RG F+ F+ A S + D+H + G TV V +A PK + + R HG
Sbjct: 39 KDQITKLPRGFAFVVFSEAASAARALQDSHVICGRTVEVKKAIPKTEKHQEHRQRHPHGN 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ G+ D+ G + KKIFVG L T E R Y
Sbjct: 99 -----------QETASNGSGMNSDN-----STGNVNYYRTKKIFVGGLSSSLTDEQFRNY 142
Query: 122 FSRFGRILDVYV-------PKRFWFCHLCGRSCSRSCFSKVSRNLW 160
F +FGR +D V P+ F F S +KV RN +
Sbjct: 143 FEKFGRTVDAIVMQDSSNKPRSFGFVTF----DSEESAAKVMRNSF 184
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
S R GF+TF S +S +M ++ HEL G TV V +A PK+ +G S G+
Sbjct: 159 SNKPRSFGFVTFDSEESAAKVMRNSFHELNGKTVEVKKAVPKDRVNGDIGSCSSNGF 215
>gi|356514529|ref|XP_003525958.1| PREDICTED: DAZ-associated protein 1-like [Glycine max]
Length = 378
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYG 63
D+ +++ RG GF+TF+ + + + DTH + G TV V +A P+ + + ++ G
Sbjct: 44 DRTTRSPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQHQHQNQL-QSRVG 102
Query: 64 AYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFS 123
Y + + + Y+ KKIFVG LP + E+ + YF
Sbjct: 103 GYYNNNNNNNNNYSNDCSSDYN-------------VRTKKIFVGGLPAGISEEEFKNYFE 149
Query: 124 RFGRILDVYV 133
RFGRI DV V
Sbjct: 150 RFGRITDVVV 159
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 5 QGSKAHR--GIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
Q S HR G GFITF S DSV+N+MV + H+L G V V RA PKE
Sbjct: 161 QDSVTHRPRGFGFITFESEDSVQNVMVKSFHDLNGRQVEVKRAVPKE 207
>gi|328769877|gb|EGF79920.1| hypothetical protein BATDEDRAFT_19794 [Batrachochytrium
dendrobatidis JAM81]
Length = 470
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D + + +G GF+ F S + +VD +G V V ATPK + +G HG
Sbjct: 139 DPTTGSPKGYGFVRFGSEADQQQSLVDLQGQMIGSRPVRVSIATPKH---KALGSNGHGM 195
Query: 62 YGAYN---AYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDL 118
G Y +Y+ A+ A +Y P + + IF+G LP T +DL
Sbjct: 196 PGYYPIPPSYMDASGAMIPNSAHMIYRQPVYMHQHLGGNDPTNSTIFIGALPATMTNDDL 255
Query: 119 RRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVSRNLWTAGCNRFS 168
R++F FG I+ +P KR F R + ++ + R S
Sbjct: 256 RKHFLPFGEIVYTKIPFGKRCGFVQFIHRQSAEMAIQEMDGKVIGGSALRLS 307
>gi|242023524|ref|XP_002432182.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Pediculus
humanus corporis]
gi|212517579|gb|EEB19444.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Pediculus
humanus corporis]
Length = 456
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q++ K+FVGR ++ TAEDLR YFS+FG + DV++PK F
Sbjct: 188 QQVPCKVFVGRCTEDITAEDLREYFSKFGEVTDVFIPKPF 227
>gi|357459939|ref|XP_003600251.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
gi|355489299|gb|AES70502.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
Length = 481
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ F+ E +++D H + G TV +A P+ DD + + R +
Sbjct: 39 RDRATGRARGFGFVVFSDPAVAERVIIDKHIIDGRTVEAKKAVPR-DDQQNINRQTG--- 94
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ G+P G G + KKIFVG LP T D + YF
Sbjct: 95 -------------SVQGSP----------GPGRT-----KKIFVGGLPSTITESDFKMYF 126
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 127 DQFGTITDVVVMYDHNTQRPRGFGFI 152
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKE 185
>gi|9758187|dbj|BAB08572.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 473
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 44/139 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD------FRPVGR 56
+D+ + RG GFI FA E +++D H + G TV +A P++D P+
Sbjct: 39 RDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHL 98
Query: 57 MS--HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEAT 114
MS HGG G KKIFVG LP T
Sbjct: 99 MSPVHGGGGRT------------------------------------KKIFVGGLPSSIT 122
Query: 115 AEDLRRYFSRFGRILDVYV 133
E+ + YF +FG I DV V
Sbjct: 123 EEEFKNYFDQFGTIADVVV 141
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF S D+V+ ++ T HEL G V V RA PKE
Sbjct: 144 DHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE 189
>gi|326525423|dbj|BAJ88758.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 471
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA A E + +D H + G V +A P++D
Sbjct: 39 RDRNTGRARGFGFIVFAEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I++ +++G+P G R KIFVG L T + RRYF
Sbjct: 87 -----SIASKNNGSSIGSP------------GPVRTR---KIFVGGLASNVTEVEFRRYF 126
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 127 EQFGMITDVVVMYDHNTQRPRGFGFI 152
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ L + HEL G V V RA PKE PV R GG
Sbjct: 140 DHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPGPVARSPAGG 198
>gi|326494758|dbj|BAJ94498.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 494
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA A E + +D H + G V +A P++D
Sbjct: 62 RDRNTGRARGFGFIVFAEAGVAERVTMDKHMIDGRMVEAKKAVPRDDQ------------ 109
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I++ +++G+P G R KIFVG L T + RRYF
Sbjct: 110 -----SIASKNNGSSIGSP------------GPVRTR---KIFVGGLASNVTEVEFRRYF 149
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 150 EQFGMITDVVV 160
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ L + HEL G V V RA PKE PV R GG
Sbjct: 163 DHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPGPVARSPAGG 221
>gi|347828861|emb|CCD44558.1| hypothetical protein [Botryotinia fuckeliana]
Length = 508
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 34/165 (20%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D S RG GF+TF A +V +MV H L G V D T
Sbjct: 32 RDGASGRSRGFGFLTFKDARTVNIVMVKEHYLDGKIVRPDLKT----------------- 74
Query: 63 GAYNAYISAATRYAALGAPTLYDH------PGSFYGRGESSQRIGKKIFVGRLPQEATAE 116
N+ S +++ L + + H P R E Q KIFVG + Q+A+ +
Sbjct: 75 -FNNSLRSYPSKFLLLASKGTHSHTTFKIDPKRAIPRDE--QERTSKIFVGGVSQDASEQ 131
Query: 117 DLRRYFSRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
D + YF++FGR++D + P+ F F + +C
Sbjct: 132 DFKEYFTQFGRVVDATLMMDKDTGRPRGFGFVTFDSEAAVEACLE 176
>gi|356566592|ref|XP_003551514.1| PREDICTED: uncharacterized protein LOC100794390 [Glycine max]
Length = 479
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA E +++D H + G TV +A P+ DD + + R S
Sbjct: 39 RDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPR-DDQQNINRQS---- 93
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ +A+ G PG KKIFVG LP T D + YF
Sbjct: 94 ---------GSAHASPG-------PGRT-----------KKIFVGGLPSTITESDFKMYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 DQFGTITDVVV 137
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKE 185
>gi|224284234|gb|ACN39853.1| unknown [Picea sitchensis]
Length = 473
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 65/165 (39%), Gaps = 40/165 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ ++ RG GF+ FA + +++D H + G TV +A P+ DD + + R
Sbjct: 39 KDRTTRRARGFGFVVFADPAIADRVVLDKHTIDGRTVEAKKAIPR-DDQQHMNR------ 91
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
N+ I+ A SQ KKIFVG L T D R+YF
Sbjct: 92 ---NSNIAHA----------------------PPSQVRTKKIFVGGLAPTVTENDFRKYF 126
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSKVSRNL 159
+FG I DV V P+ F F K +L
Sbjct: 127 EQFGTITDVVVMYDHSTQRPRGFGFITYDSEDAVDQVLQKTFHDL 171
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S D+V+ ++ T H+L G V V RA PKE P R GG+
Sbjct: 140 DHSTQRPRGFGFITYDSEDAVDQVLQKTFHDLNGKMVEVKRAVPKELSPSPA-RTPIGGF 198
Query: 63 G 63
G
Sbjct: 199 G 199
>gi|22531168|gb|AAM97088.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 448
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 44/139 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD------FRPVGR 56
+D+ + RG GFI FA E +++D H + G TV +A P++D P+
Sbjct: 39 RDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHL 98
Query: 57 MS--HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEAT 114
MS HGG G KKIFVG LP T
Sbjct: 99 MSPVHGGGGRT------------------------------------KKIFVGGLPSSIT 122
Query: 115 AEDLRRYFSRFGRILDVYV 133
E+ + YF +FG I DV V
Sbjct: 123 EEEFKNYFDQFGTIADVVV 141
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF S D+V+ ++ T HEL G V V RA PKE
Sbjct: 144 DHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE 189
>gi|4938503|emb|CAB43861.1| hnRNP-like protein [Arabidopsis thaliana]
gi|7269517|emb|CAB79520.1| hnRNP-like protein [Arabidopsis thaliana]
Length = 524
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 57/139 (41%), Gaps = 41/139 (29%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF---RPVGRM-- 57
+D+ + RG GFI FA E +++D H + G TV +A P++D R M
Sbjct: 41 RDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHL 100
Query: 58 ---SHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEAT 114
SHGG G GA T KKIFVG LP T
Sbjct: 101 ISPSHGGNGG--------------GART-------------------KKIFVGGLPSSIT 127
Query: 115 AEDLRRYFSRFGRILDVYV 133
+ + YF +FG I DV V
Sbjct: 128 EAEFKNYFDQFGTIADVVV 146
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFITF S +SV+ ++ T HEL G V V RA PKE R GY
Sbjct: 149 DHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGY 208
Query: 63 GAYNAYISAATRYAA 77
G N Y R +A
Sbjct: 209 G--NNYGVVPNRSSA 221
>gi|405957161|gb|EKC23392.1| TAR DNA-binding protein 43 [Crassostrea gigas]
Length = 457
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+ Q + +K+FVGR ++ TAEDLR YF +FG ++DV++PK F
Sbjct: 198 AQQIMNRKVFVGRCTEDMTAEDLRNYFGKFGEVVDVFIPKPF 239
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
QR I +G LP ++T EDLR+YFS+FG +L V V
Sbjct: 115 QRCSDLIVLG-LPWKSTEEDLRKYFSQFGELLMVQV 149
>gi|348668207|gb|EGZ08031.1| hypothetical protein PHYSODRAFT_526739 [Phytophthora sojae]
Length = 158
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 43/133 (32%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+ KD+ + RG GF+TFA A +++ ++ +TH L G +V V RA P+E
Sbjct: 49 LMKDKYTGQPRGFGFVTFADATAIDRVLDETHTLDGRSVEVKRAIPRE------------ 96
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
+ A G L KKIFVG L T +D R
Sbjct: 97 -------------KTAPGGGSRL------------------KKIFVGGLAPTVTEQDFRH 125
Query: 121 YFSRFGRILDVYV 133
YF FG+I D V
Sbjct: 126 YFEEFGKITDAVV 138
>gi|18423760|ref|NP_568826.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|42573682|ref|NP_974937.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|15292725|gb|AAK92731.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20465895|gb|AAM20100.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332009263|gb|AED96646.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009264|gb|AED96647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 460
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 44/139 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD------FRPVGR 56
+D+ + RG GFI FA E +++D H + G TV +A P++D P+
Sbjct: 39 RDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHL 98
Query: 57 MS--HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEAT 114
MS HGG G KKIFVG LP T
Sbjct: 99 MSPVHGGGGRT------------------------------------KKIFVGGLPSSIT 122
Query: 115 AEDLRRYFSRFGRILDVYV 133
E+ + YF +FG I DV V
Sbjct: 123 EEEFKNYFDQFGTIADVVV 141
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF S D+V+ ++ T HEL G V V RA PKE
Sbjct: 144 DHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE 189
>gi|222423819|dbj|BAH19875.1| AT4G26650 [Arabidopsis thaliana]
Length = 452
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA E +++D H + G TV +A P++D
Sbjct: 45 RDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQ------------ 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
R+A +P P S G G ++ KKIFVG LP T + + YF
Sbjct: 93 -------QVLKRHA---SPMHLISP-SHGGNGGGART--KKIFVGGLPSSITEAEFKNYF 139
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 140 DQFGTIADVVV 150
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF S +SV+ ++ T HEL G + V RA PKE
Sbjct: 153 DHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMIEVKRAVPKE 198
>gi|30696616|ref|NP_851195.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|334188426|ref|NP_001190546.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009262|gb|AED96645.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332009265|gb|AED96648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 448
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 44/139 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDD------FRPVGR 56
+D+ + RG GFI FA E +++D H + G TV +A P++D P+
Sbjct: 39 RDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHL 98
Query: 57 MS--HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEAT 114
MS HGG G KKIFVG LP T
Sbjct: 99 MSPVHGGGGRT------------------------------------KKIFVGGLPSSIT 122
Query: 115 AEDLRRYFSRFGRILDVYV 133
E+ + YF +FG I DV V
Sbjct: 123 EEEFKNYFDQFGTIADVVV 141
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF S D+V+ ++ T HEL G V V RA PKE
Sbjct: 144 DHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE 189
>gi|297803432|ref|XP_002869600.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297315436|gb|EFH45859.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA E +++D H + G TV +A P++D
Sbjct: 48 RDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQ------------ 95
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
R+A +P P S G G ++ KKIFVG LP T + + YF
Sbjct: 96 -------QVLKRHA---SPMHLISP-SHGGNGGGART--KKIFVGGLPSSITEAEFKNYF 142
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 143 DQFGTIADVVV 153
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF S +SV+ ++ T HEL G V V RA PKE
Sbjct: 156 DHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKE 201
>gi|18416794|ref|NP_567753.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16930503|gb|AAL31937.1|AF419605_1 AT4g26650/T15N24_100 [Arabidopsis thaliana]
gi|20453245|gb|AAM19861.1| AT4g26650/T15N24_100 [Arabidopsis thaliana]
gi|332659832|gb|AEE85232.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 455
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA E +++D H + G TV +A P++D
Sbjct: 48 RDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQ------------ 95
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
R+A +P P S G G ++ KKIFVG LP T + + YF
Sbjct: 96 -------QVLKRHA---SPMHLISP-SHGGNGGGART--KKIFVGGLPSSITEAEFKNYF 142
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 143 DQFGTIADVVV 153
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF S +SV+ ++ T HEL G V V RA PKE
Sbjct: 156 DHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKE 201
>gi|79325275|ref|NP_001031725.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332659833|gb|AEE85233.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 452
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA E +++D H + G TV +A P++D
Sbjct: 45 RDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQ------------ 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
R+A +P P S G G ++ KKIFVG LP T + + YF
Sbjct: 93 -------QVLKRHA---SPMHLISP-SHGGNGGGART--KKIFVGGLPSSITEAEFKNYF 139
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 140 DQFGTIADVVV 150
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF S +SV+ ++ T HEL G V V RA PKE
Sbjct: 153 DHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKE 198
>gi|255576302|ref|XP_002529044.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223531524|gb|EEF33355.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 478
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA E ++VD H + G TV +A P++D
Sbjct: 39 RDRTTGRARGFGFVVFADPAVAERVIVDKHMIDGRTVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+I + G+P G G + KKIFVG L T D ++YF
Sbjct: 87 -----HILNRNTSSIHGSP----------GPGRT-----KKIFVGGLASTVTDNDFKKYF 126
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 127 EQFGNITDVVVMYDHNTQRPRGFGFI 152
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S D+V+ ++ T HEL G V V RA PKE
Sbjct: 140 DHNTQRPRGFGFITYDSEDAVDRVLHKTFHELNGKMVEVKRAVPKE 185
>gi|242046120|ref|XP_002460931.1| hypothetical protein SORBIDRAFT_02g037690 [Sorghum bicolor]
gi|241924308|gb|EER97452.1| hypothetical protein SORBIDRAFT_02g037690 [Sorghum bicolor]
Length = 471
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA + E + +D H + G V +A P++D
Sbjct: 39 RDRNTGRARGFGFVVFADSGIAERVTMDKHMIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I++ +++G+P G G + +KIFVG L T + RRYF
Sbjct: 87 -----SIASKNNGSSIGSP----------GPGRT-----RKIFVGGLASNVTEVEFRRYF 126
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 127 EQFGVITDVVVMYDHNTQRPRGFGFI 152
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ L + HEL G V V RA PKE P+ R GG
Sbjct: 140 DHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPGPIARSPVGG 198
>gi|115473043|ref|NP_001060120.1| Os07g0584500 [Oryza sativa Japonica Group]
gi|38175737|dbj|BAC55617.2| putative heterogeneous nuclear ribonucleoprotein A1 [Oryza sativa
Japonica Group]
gi|113611656|dbj|BAF22034.1| Os07g0584500 [Oryza sativa Japonica Group]
gi|215695373|dbj|BAG90564.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 472
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ F A E + +D H + G V +A P++D
Sbjct: 39 RDRNTGRARGFGFVVFTDAGVAERVTMDKHMIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I++ +++G+P G G + +KIFVG L T + RRYF
Sbjct: 87 -----SITSKNNGSSIGSP----------GPGRT-----RKIFVGGLASNVTEVEFRRYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 EQFGVITDVVV 137
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ L + HEL G V V RA PKE P R GG
Sbjct: 140 DHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPGPAARSPAGG 198
>gi|218199915|gb|EEC82342.1| hypothetical protein OsI_26646 [Oryza sativa Indica Group]
Length = 472
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ F A E + +D H + G V +A P++D
Sbjct: 39 RDRNTGRARGFGFVVFTDAGVAERVTMDKHMIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I++ +++G+P G G + +KIFVG L T + RRYF
Sbjct: 87 -----SITSKNNGSSIGSP----------GPGRT-----RKIFVGGLASNVTEVEFRRYF 126
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 127 EQFGVITDVVVMYDHNTQRPRGFGFI 152
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ L + HEL G V V RA PKE P R GG
Sbjct: 140 DHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPGPAARSPAGG 198
>gi|356527120|ref|XP_003532161.1| PREDICTED: uncharacterized protein LOC100805131 [Glycine max]
Length = 513
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ F E +++D H + G TV +A P+ DD + + R S
Sbjct: 73 RDRVTGRARGFGFVVFGDPSVAERVIMDKHIIDGRTVEAKKAVPR-DDQQNINRQSG--- 128
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+A++S PG KKIFVG LP T D + YF
Sbjct: 129 ---SAHVSPG--------------PGRT-----------KKIFVGGLPSTITESDFKTYF 160
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 161 DQFGTITDVVV 171
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 174 DHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKE 219
>gi|307166910|gb|EFN60814.1| TAR DNA-binding protein 43 [Camponotus floridanus]
Length = 284
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q++ K+FVGR ++ TA+DLR YFS+FG + DV++PK F
Sbjct: 3 QQVPCKVFVGRCTEDLTADDLRDYFSKFGEVTDVFIPKPF 42
>gi|322780873|gb|EFZ10102.1| hypothetical protein SINV_16596 [Solenopsis invicta]
Length = 286
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q++ K+FVGR ++ TA+DLR YFS+FG + DV++PK F
Sbjct: 5 QQVPCKVFVGRCTEDLTADDLRDYFSKFGEVTDVFIPKPF 44
>gi|297796435|ref|XP_002866102.1| hypothetical protein ARALYDRAFT_495641 [Arabidopsis lyrata subsp.
lyrata]
gi|297311937|gb|EFH42361.1| hypothetical protein ARALYDRAFT_495641 [Arabidopsis lyrata subsp.
lyrata]
Length = 449
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 27/131 (20%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA E ++++ H + G TV +A P++D
Sbjct: 39 RDRATGRARGFGFIVFADPCVSERVIMEKHIIDGRTVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
R+A+ P P G G + KKIFVG LP T E+ + YF
Sbjct: 87 -------QVLKRHAS---PIQLMSPVHGGGGGRT-----KKIFVGGLPSSITEEEFKNYF 131
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 132 DQFGTIADVVV 142
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG- 61
D ++ RG GFITF S D+V+ ++ T HEL G V V RA PKE R G
Sbjct: 145 DHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKETSPVSNNRSPLPGG 204
Query: 62 --YGAYNAYISAATRYAALG-APTLYDHPGSFYGR 93
YG + ISA + + P Y++ G GR
Sbjct: 205 LNYGGGSNRISANSYFNNFAPGPGFYNNLGPVGGR 239
>gi|255537972|ref|XP_002510051.1| DAZ-associated protein, putative [Ricinus communis]
gi|223550752|gb|EEF52238.1| DAZ-associated protein, putative [Ricinus communis]
Length = 370
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+ F+ + V+ + D+H + G TV V +A PK + +
Sbjct: 39 KDKITKNSRGFGFVWFSDSAFVDKALQDSHVILGRTVEVKKAIPKTEQLQ---------- 88
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ Y + G G R KKIFVG L T E + YF
Sbjct: 89 --FHRYQQQQQWQFPNQQKNSRLSESNGNGNGGDYFRT-KKIFVGGLSSSLTEEQFKDYF 145
Query: 123 SRFGRILDVYV 133
FG+I+DV V
Sbjct: 146 ESFGKIVDVVV 156
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D + RG GF+TF S DSV+ M T HEL G V V RA PKE+
Sbjct: 158 QDSSTNRPRGFGFVTFDSEDSVDKAMEKTFHELMGKRVEVKRAVPKEE 205
>gi|154296333|ref|XP_001548598.1| hypothetical protein BC1G_12993 [Botryotinia fuckeliana B05.10]
Length = 627
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 34/164 (20%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D S RG GF+TF A +V +MV H L G V D T
Sbjct: 152 RDGASGRSRGFGFLTFKDARTVNIVMVKEHYLDGKIVRPDLKTFN--------------- 196
Query: 63 GAYNAYISAATRYAALGAPTLYDH------PGSFYGRGESSQRIGKKIFVGRLPQEATAE 116
N+ S +++ L + + H P R E Q KIFVG + Q+A+ +
Sbjct: 197 ---NSLRSYPSKFLLLASEGTHSHTTFKIDPKRAIPRDE--QERTSKIFVGGVSQDASEQ 251
Query: 117 DLRRYFSRFGRILDVYV--------PKRFWFCHLCGRSCSRSCF 152
D + YF++FGR++D + P+ F F + +C
Sbjct: 252 DFKEYFTQFGRVVDATLMMDKDTGRPRGFGFVTFDSEAAVEACL 295
>gi|156055736|ref|XP_001593792.1| hypothetical protein SS1G_05220 [Sclerotinia sclerotiorum 1980]
gi|154703004|gb|EDO02743.1| hypothetical protein SS1G_05220 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 521
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 34/165 (20%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D S RG GF+TF A +V +MV H L G V D T
Sbjct: 50 RDGASGRSRGFGFLTFKDARTVNIVMVKEHYLDGKIVRPDLKT----------------- 92
Query: 63 GAYNAYISAATRYAALGAPTLYDH------PGSFYGRGESSQRIGKKIFVGRLPQEATAE 116
N+ S +++ L + + H P R E Q KIFVG + Q+A+ +
Sbjct: 93 -FNNSLRSYPSKFHYLASKNISSHSNFKIDPKRAIPRDE--QERTSKIFVGGVSQDASEQ 149
Query: 117 DLRRYFSRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
D + YF +FGR++D + P+ F F + +C
Sbjct: 150 DFKEYFMQFGRVVDATLMMDKDTGRPRGFGFVTFDSEAAVEACLE 194
>gi|332029556|gb|EGI69445.1| TAR DNA-binding protein 43 [Acromyrmex echinatior]
Length = 469
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q++ K+FVGR ++ TA+DLR YFS+FG + DV++PK F
Sbjct: 188 QQVPCKVFVGRCTEDLTADDLREYFSKFGEVTDVFIPKPF 227
>gi|422296095|gb|EKU23394.1| RNA-binding protein Musashi, partial [Nannochloropsis gaditana
CCMP526]
Length = 240
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 57/131 (43%), Gaps = 29/131 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF++FA+ ++E + + H L G + V +A P+E PV R GG
Sbjct: 78 RDKNTGGPRGFGFVSFATPAAMEAAVSEAHMLDGRNLDVKKAVPREQAPAPV-RAIWGGT 136
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
GA G Q I KK+FVG L + T E R YF
Sbjct: 137 GA---------------------------GPQRQFQDI-KKVFVGGLSPDVTEEAFRAYF 168
Query: 123 SRFGRILDVYV 133
+FG I D V
Sbjct: 169 DKFGEITDAVV 179
>gi|255948100|ref|XP_002564817.1| Pc22g08010 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591834|emb|CAP98089.1| Pc22g08010 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 456
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 56/160 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF A +V +MV H L G + RA P+++
Sbjct: 32 RDSATGRSRGFGFLTFRDAKTVNTVMVKEHYLDGKIIDPKRAIPRDE------------- 78
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT +D +++F
Sbjct: 79 -----------------------------------QEKTSKIFVGGVSQEATEQDFKQFF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
+FGR++D + P+ F F G + S+
Sbjct: 104 MQFGRVVDATLMMDKDTGRPRGFGFVTFDGDAAVEKALSR 143
>gi|222622445|gb|EEE56577.1| hypothetical protein OsJ_05928 [Oryza sativa Japonica Group]
Length = 510
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+ MS
Sbjct: 212 KDKHTKMPRGFGFVTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREE-------MSS--- 261
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
D P + +KIFVG LP T ++LR +F
Sbjct: 262 ---------------------KDGPKT------------RKIFVGGLPSSLTEDELREHF 288
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G+I++ + H GRS
Sbjct: 289 SPYGKIVE----HQIMLDHSTGRS 308
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48
D + RG GF+TF S DSVE ++ + +LGG V + +A PK+
Sbjct: 302 DHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 348
>gi|361131862|gb|EHL03497.1| putative Uncharacterized RNA-binding protein [Glarea lozoyensis
74030]
Length = 467
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 58/159 (36%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D S RG GF+TF A +V +MV H L G + RA P+++ R
Sbjct: 32 RDGASGRSRGFGFLTFKDARTVNIVMVKEHYLDGKIIDPKRAIPRDEQER---------- 81
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEAT +D ++YF
Sbjct: 82 --------------------------------------TSKIFVGGVSQEATEQDFKQYF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
+FGR++D + P+ F F + +C
Sbjct: 104 MQFGRVVDATLMMDKDTGRPRGFGFVTFDSEAAVEACLE 142
>gi|391331401|ref|XP_003740135.1| PREDICTED: TAR DNA-binding protein 43-like [Metaseiulus
occidentalis]
Length = 479
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
R + + +K+FVGR ++ TA+DLR YFS+FG + DV++PK F
Sbjct: 189 RDGQASELSRKVFVGRCTEDLTADDLRDYFSKFGEVTDVFIPKPF 233
>gi|148907387|gb|ABR16827.1| unknown [Picea sitchensis]
Length = 432
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 38/143 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI F+ +V+ ++ D H + G V + RA P+E+ R
Sbjct: 39 RDKMTGRARGFGFIGFSEPTAVDRVLQDKHTIDGRQVELKRAVPREEHQR---------- 88
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
NA S GS G G + KKIFVG L T +D + YF
Sbjct: 89 ---NAQKS-----------------GSNVGAGPRT----KKIFVGGLAPTVTEDDFKGYF 124
Query: 123 SRFGRILDVYVPKRFWFCHLCGR 145
+FG I DV V + H+ R
Sbjct: 125 EQFGTITDVVV----MYDHISQR 143
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKE 48
D S+ RG GFITF S ++V+ +M + HEL TV V RA PKE
Sbjct: 138 DHISQRPRGFGFITFDSEEAVDKVVMKNFHELHDKTVEVKRALPKE 183
>gi|425766220|gb|EKV04844.1| Heterogeneous nuclear ribonucleoprotein HRP1 [Penicillium digitatum
PHI26]
gi|425779142|gb|EKV17231.1| Heterogeneous nuclear ribonucleoprotein HRP1 [Penicillium digitatum
Pd1]
Length = 447
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 56/160 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF A +V +MV H L G + RA P+++
Sbjct: 30 RDSATGRSRGFGFLTFRDAKTVNTVMVKEHYLDGKIIDPKRAIPRDE------------- 76
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT +D +++F
Sbjct: 77 -----------------------------------QEKTSKIFVGGVSQEATEQDFKQFF 101
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
+FGR++D + P+ F F G + S+
Sbjct: 102 MQFGRVVDATLMMDKDTGRPRGFGFVTFDGDAAVEKALSR 141
>gi|357122209|ref|XP_003562808.1| PREDICTED: uncharacterized protein LOC100836006 [Brachypodium
distachyon]
Length = 472
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA E + +D H + G V +A P++D
Sbjct: 39 RDRNTGRARGFGFIVFAEPGVAERVTMDKHMIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I++ +++G+P G R KIFVG L T + RRYF
Sbjct: 87 -----SIASKNNGSSIGSP------------GPVRTR---KIFVGGLASNVTEVEFRRYF 126
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 127 EQFGMITDVVVMYDHNTQRPRGFGFI 152
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ L + HEL G V V RA PKE PV R GG
Sbjct: 140 DHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPGPVARSPAGG 198
>gi|156395208|ref|XP_001637003.1| predicted protein [Nematostella vectensis]
gi|156224112|gb|EDO44940.1| predicted protein [Nematostella vectensis]
Length = 291
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 48/134 (35%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYG 63
D ++ RG GF+ F + +N++ +H + G V PKE+
Sbjct: 149 DPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEVRLPRPKEE-------------- 194
Query: 64 AYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFS 123
L P KK+FVGRLP+ T + L YF+
Sbjct: 195 --------------LNVP--------------------KKLFVGRLPESTTEKTLMEYFA 220
Query: 124 RFGRILDVYVPKRF 137
+FG + DVY+PK F
Sbjct: 221 QFGEVTDVYIPKPF 234
>gi|307199474|gb|EFN80087.1| TAR DNA-binding protein 43 [Harpegnathos saltator]
Length = 467
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q++ K+FVGR ++ TA+DLR YFS+FG + DV++PK F
Sbjct: 188 QQVPCKVFVGRCTEDLTADDLRDYFSKFGEVTDVFIPKPF 227
>gi|326531676|dbj|BAJ97842.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+
Sbjct: 95 KDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE------------- 141
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ P +KIFVG LP T +DLR +F
Sbjct: 142 ------------MSSKDGPKT------------------RKIFVGGLPSTLTEDDLRDHF 171
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G + V + H GRS
Sbjct: 172 SSYGNV----VEHQIMVDHSTGRS 191
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48
D + RG GF+TF S DSVE ++ + +LGG V + +A PK+
Sbjct: 185 DHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 231
>gi|326487243|dbj|BAJ89606.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506666|dbj|BAJ91374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+
Sbjct: 95 KDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE------------- 141
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ P +KIFVG LP T +DLR +F
Sbjct: 142 ------------MSSKDGPKT------------------RKIFVGGLPSTLTEDDLRDHF 171
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G + V + H GRS
Sbjct: 172 SSYGNV----VEHQIMVDHSTGRS 191
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48
D + RG GF+TF S DSVE ++ + +LGG V + +A PK+
Sbjct: 185 DHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 231
>gi|345490453|ref|XP_001602436.2| PREDICTED: TAR DNA-binding protein 43-like [Nasonia vitripennis]
Length = 476
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q++ K+FVGR ++ TA+DLR YFS+FG + DV++PK F
Sbjct: 187 QQVPCKVFVGRCTEDLTADDLRDYFSKFGEVTDVFIPKPF 226
>gi|255582445|ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223528341|gb|EEF30383.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 484
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 31/131 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA A E ++++ H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFADAAVAERVIMEKHNIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ +T + G+P G G + +KIFVG L T D R+YF
Sbjct: 87 ----NILNRSTGSSIHGSP----------GPGRT-----RKIFVGGLASTVTETDFRKYF 127
Query: 123 SRFGRILDVYV 133
++G I DV V
Sbjct: 128 EQYGTITDVVV 138
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S ++V+ +++ T HEL G V V RA PKE P R GGY
Sbjct: 141 DHNTQRPRGFGFITYDSEEAVDKVLMKTFHELNGKMVEVKRAVPKELSPGPS-RSPLGGY 199
>gi|414887335|tpg|DAA63349.1| TPA: hypothetical protein ZEAMMB73_769138 [Zea mays]
Length = 342
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 33/131 (25%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA + E + +D H + G V +A P++D
Sbjct: 39 RDRNTGRARGFGFVVFADSGIAERVTLDKHMIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A+ +++G+P G G + +KIFVG L T + RRYF
Sbjct: 87 ------SIASKNNSSIGSP----------GPGRT-----RKIFVGGLASNVTEVEFRRYF 125
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 126 EQFGVITDVVV 136
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ L + HEL G V V RA PKE P+ R GG
Sbjct: 139 DHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPGPIARSPAGG 197
>gi|443686443|gb|ELT89721.1| hypothetical protein CAPTEDRAFT_175992 [Capitella teleta]
Length = 444
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 95 ESSQRI-GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
E +Q I +K+F+GR ++ TA+DLR YF++FG ++DV++PK F
Sbjct: 183 EGTQHIVNRKVFIGRCTEDMTADDLRSYFNKFGEVVDVFIPKPF 226
>gi|357447959|ref|XP_003594255.1| RNA-binding protein, putative [Medicago truncatula]
gi|355483303|gb|AES64506.1| RNA-binding protein, putative [Medicago truncatula]
Length = 446
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 30/131 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++++ H + G TV +A P++D
Sbjct: 2 KDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQ------------ 49
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
N + + + APT KKIFVG L T D + YF
Sbjct: 50 ---NVFTRSNSSSHGSPAPTPIRT---------------KKIFVGGLASTVTESDFKNYF 91
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 92 DQFGTITDVVV 102
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++VE ++ T HEL G V V RA PK+
Sbjct: 105 DHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKD 150
>gi|258574483|ref|XP_002541423.1| hypothetical protein UREG_00938 [Uncinocarpus reesii 1704]
gi|237901689|gb|EEP76090.1| hypothetical protein UREG_00938 [Uncinocarpus reesii 1704]
Length = 341
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 56/160 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF A +V +MV H L G + RA P+++ R
Sbjct: 32 RDGATGRSRGFGFLTFKDAKTVNTVMVKEHYLDGKIIDPKRAIPRDEQERT--------- 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + Q+AT +D +++F
Sbjct: 83 ---------------------------------------SKIFVGGVSQDATEQDFKKFF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
+FGR++D + P+ F F + +C S+
Sbjct: 104 MQFGRVVDATLMIDKDTGRPRGFGFVTFDSEAAVEACLSQ 143
>gi|357447957|ref|XP_003594254.1| RNA-binding protein, putative [Medicago truncatula]
gi|355483302|gb|AES64505.1| RNA-binding protein, putative [Medicago truncatula]
Length = 522
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 30/131 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++++ H + G TV +A P++D
Sbjct: 78 KDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQ------------ 125
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
N + + + APT KKIFVG L T D + YF
Sbjct: 126 ---NVFTRSNSSSHGSPAPTPIRT---------------KKIFVGGLASTVTESDFKNYF 167
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 168 DQFGTITDVVV 178
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPV-GRMSHGG 61
D ++ RG GFIT+ S ++VE ++ T HEL G V V RA PK+ P G++
Sbjct: 181 DHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSRGQLGGFS 240
Query: 62 YGAYNAYISAATRYAALGAPTL 83
YG + S + +A P+L
Sbjct: 241 YGTMSRVGSFSNGFAQGYNPSL 262
>gi|357140379|ref|XP_003571746.1| PREDICTED: uncharacterized protein LOC100831046 isoform 1
[Brachypodium distachyon]
Length = 403
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+
Sbjct: 98 KDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE------------- 144
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ P +KIFVG LP + +DLR +F
Sbjct: 145 ------------MSSKDGPKT------------------RKIFVGGLPASLSEDDLRDHF 174
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++ V + H GRS
Sbjct: 175 SSYGKV----VEHQIMVDHSTGRS 194
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED--DFRPVGRMSH 59
D + RG GF+TF S DSVE ++ + +LGG V + +A PK+ D GR SH
Sbjct: 188 DHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSSH 247
Query: 60 GGYG 63
G G
Sbjct: 248 AGGG 251
>gi|414883904|tpg|DAA59918.1| TPA: hypothetical protein ZEAMMB73_017923 [Zea mays]
Length = 415
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 35/137 (25%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ F A E + ++ H + G V +A P++D
Sbjct: 48 RDRSTGRARGFGFVVFTDAAVAERVTMEKHMIDGRMVEAKKAVPRDDH------------ 95
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I + + + G+P G G + +KIFVG LP T D RRYF
Sbjct: 96 -----SIVSKSNGRSTGSP----------GPGRT-----RKIFVGGLPSSITEADFRRYF 135
Query: 123 SRFGRILDVY---VPKR 136
+FG I DV VPK
Sbjct: 136 EQFGVITDVVKKAVPKE 152
>gi|357140381|ref|XP_003571747.1| PREDICTED: uncharacterized protein LOC100831046 isoform 2
[Brachypodium distachyon]
Length = 383
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+
Sbjct: 78 KDKHTKMPRGFGFVTFSDPSVIDKVLEDEHNIDGRTVEVKRTVPREE------------- 124
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ P +KIFVG LP + +DLR +F
Sbjct: 125 ------------MSSKDGPKT------------------RKIFVGGLPASLSEDDLRDHF 154
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++ V + H GRS
Sbjct: 155 SSYGKV----VEHQIMVDHSTGRS 174
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED--DFRPVGRMSH 59
D + RG GF+TF S DSVE ++ + +LGG V + +A PK+ D GR SH
Sbjct: 168 DHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGGDHSSNGRSSH 227
Query: 60 GGYG 63
G G
Sbjct: 228 AGGG 231
>gi|115445085|ref|NP_001046322.1| Os02g0221500 [Oryza sativa Japonica Group]
gi|46806500|dbj|BAD17624.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|46806519|dbj|BAD17632.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|113535853|dbj|BAF08236.1| Os02g0221500 [Oryza sativa Japonica Group]
Length = 397
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+
Sbjct: 99 KDKHTKMPRGFGFVTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREE------------- 145
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ P +KIFVG LP T ++LR +F
Sbjct: 146 ------------MSSKDGPKT------------------RKIFVGGLPSSLTEDELREHF 175
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G+I V + H GRS
Sbjct: 176 SPYGKI----VEHQIMLDHSTGRS 195
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48
D + RG GF+TF S DSVE ++ + +LGG V + +A PK+
Sbjct: 189 DHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 235
>gi|414887334|tpg|DAA63348.1| TPA: hypothetical protein ZEAMMB73_769138, partial [Zea mays]
Length = 467
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 41/146 (28%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA + E + +D H + G V +A P++D
Sbjct: 39 RDRNTGRARGFGFVVFADSGIAERVTLDKHMIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A+ +++G+P G G + +KIFVG L T + RRYF
Sbjct: 87 ------SIASKNNSSIGSP----------GPGRT-----RKIFVGGLASNVTEVEFRRYF 125
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 126 EQFGVITDVVVMYDHNTQRPRGFGFI 151
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ L + HEL G V V RA PKE P+ R GG
Sbjct: 139 DHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPGPIARSPAGG 197
>gi|226494259|ref|NP_001146396.1| uncharacterized protein LOC100279976 [Zea mays]
gi|219887017|gb|ACL53883.1| unknown [Zea mays]
gi|223975747|gb|ACN32061.1| unknown [Zea mays]
Length = 470
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 41/146 (28%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA + E + +D H + G V +A P++D
Sbjct: 39 RDRNTGRARGFGFVVFADSGIAERVTLDKHMIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A+ +++G+P G G + +KIFVG L T + RRYF
Sbjct: 87 ------SIASKNNSSIGSP----------GPGRT-----RKIFVGGLASNVTEVEFRRYF 125
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 126 EQFGVITDVVVMYDHNTQRPRGFGFI 151
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ L + HEL G V V RA PKE P+ R GG
Sbjct: 139 DHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPGPIARSPAGG 197
>gi|46806499|dbj|BAD17623.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|46806518|dbj|BAD17631.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
Length = 374
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 60/144 (41%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+ MS
Sbjct: 99 KDKHTKMPRGFGFVTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREE-------MSS--- 148
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
D P + +KIFVG LP T ++LR +F
Sbjct: 149 ---------------------KDGPKT------------RKIFVGGLPSSLTEDELREHF 175
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G+I V + H GRS
Sbjct: 176 SPYGKI----VEHQIMLDHSTGRS 195
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48
D + RG GF+TF S DSVE ++ + +LGG V + +A PK+
Sbjct: 189 DHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 235
>gi|406860631|gb|EKD13688.1| hypothetical protein MBM_07889 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 453
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 57/158 (36%), Gaps = 56/158 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D S RG GF+TF A +V +MV H L G + RA P+++ R
Sbjct: 32 RDGASGRSRGFGFLTFKDARTVNIVMVKEHYLDGKIIDPKRAIPRDEQERT--------- 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEAT +D + YF
Sbjct: 83 ---------------------------------------SKIFVGGVSQEATEQDFKEYF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCF 152
+FGR++D + P+ F F + +C
Sbjct: 104 MQFGRVVDATLMMDKDTGRPRGFGFVTFDSEAAVDACL 141
>gi|116787926|gb|ABK24693.1| unknown [Picea sitchensis]
Length = 476
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 36/160 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ F+ V+ + + H + G V +A P+ +
Sbjct: 39 KDRLTGRARGFGFVVFSDPSIVDIALQEKHTIDGRAVEAKKAVPRSEQQNT--------- 89
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
N+Y + ++ G G S R KKIFVG LP T ED + YF
Sbjct: 90 -RTNSYNNNDSQ-----------------GYGGGSVRT-KKIFVGGLPANLTEEDFKNYF 130
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
+FG I DV V P+ F F S K
Sbjct: 131 QQFGNITDVVVMYDHNTQRPRGFGFISFDSEDAVESVLQK 170
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFI+F S D+VE+++ + H+L V V RA PK+
Sbjct: 144 DHNTQRPRGFGFISFDSEDAVESVLQKSFHQLNEKLVEVKRALPKD 189
>gi|358334791|dbj|GAA32408.2| heterogeneous nuclear ribonucleoprotein A1/A3 [Clonorchis sinensis]
Length = 340
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD S RG GFIT+ + V+ + HE+ G TV RA P+ED P M+
Sbjct: 50 KDSVSHRSRGFGFITYKEPEMVDAAQANRPHEIDGKTVEAKRAMPREDSQTPESHMTV-- 107
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KK+FVG L ++ T ++LR Y
Sbjct: 108 ----------------------------------------KKLFVGALKKDVTQDELRDY 127
Query: 122 FSRFGRILDVYV 133
FS++G I+D +
Sbjct: 128 FSKYGNIVDCEI 139
>gi|224129106|ref|XP_002320502.1| predicted protein [Populus trichocarpa]
gi|222861275|gb|EEE98817.1| predicted protein [Populus trichocarpa]
Length = 479
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 31/131 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++ + H + G V +A P+ DD + R S G
Sbjct: 39 KDRTTGRARGFGFVVFADPAVAERVIKEKHSIDGRMVEAKKAVPR-DDQNILNRNSGG-- 95
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+++ PG GR KKIFVG L T D + YF
Sbjct: 96 -------------------SIHSSPGP--GRT-------KKIFVGGLASTVTENDFKNYF 127
Query: 123 SRFGRILDVYV 133
+FG I+DV V
Sbjct: 128 DQFGTIIDVVV 138
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFITF S ++V+ +++ T HEL G V V RA PKE P R GGY
Sbjct: 141 DHNTQRPRGFGFITFDSEEAVDKVLMRTFHELNGKMVEVKRAVPKELSPGPS-RSPLGGY 199
>gi|195999482|ref|XP_002109609.1| hypothetical protein TRIADDRAFT_20799 [Trichoplax adhaerens]
gi|190587733|gb|EDV27775.1| hypothetical protein TRIADDRAFT_20799 [Trichoplax adhaerens]
Length = 154
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 42/133 (31%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+ GS+ RG GF+T+ SV+N + H++ G TV V A P+E +
Sbjct: 35 ESGSRKPRGFGFVTYKDVTSVKNCLAGIPHQIDGKTVEVKHAVPRESN------------ 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
L AP +R KKIF+G L T ++R+YF
Sbjct: 83 --------------ELAAP---------------HERRSKKIFIGGLGASTTETEIRQYF 113
Query: 123 SRFGRILDVYVPK 135
++FG+IL++ + K
Sbjct: 114 NQFGKILNIDLKK 126
>gi|449463368|ref|XP_004149406.1| PREDICTED: nuclear polyadenylated RNA-binding protein 4-like
[Cucumis sativus]
gi|449496860|ref|XP_004160246.1| PREDICTED: nuclear polyadenylated RNA-binding protein 4-like
[Cucumis sativus]
Length = 347
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT+A V+ ++ DTH + G V + R PK
Sbjct: 52 KDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPK--------------- 96
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G+G+S KKIFVG +P T ++ + +F
Sbjct: 97 -----------------------------GQGQSKDFKTKKIFVGGIPSTVTEDEFKHFF 127
Query: 123 SRFGRILD 130
S++G+I++
Sbjct: 128 SKYGKIVE 135
>gi|24664592|ref|NP_648764.1| CG7804, isoform A [Drosophila melanogaster]
gi|442632483|ref|NP_001261874.1| CG7804, isoform B [Drosophila melanogaster]
gi|21428322|gb|AAM49821.1| AT09813p [Drosophila melanogaster]
gi|23093435|gb|AAF49643.2| CG7804, isoform A [Drosophila melanogaster]
gi|220949576|gb|ACL87331.1| CG7804-PA [synthetic construct]
gi|220958484|gb|ACL91785.1| CG7804-PA [synthetic construct]
gi|440215819|gb|AGB94567.1| CG7804, isoform B [Drosophila melanogaster]
Length = 318
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
RG +Q GK +FVGR ++ A+DLR YFS+FG ++DV++PK F
Sbjct: 184 RGMGNQEPGK-VFVGRCTEDIEADDLREYFSKFGEVIDVFIPKPF 227
>gi|209875917|ref|XP_002139401.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209555007|gb|EEA05052.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 395
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GFITFAS +SV+ ++ + G + RA P+ + GG N S
Sbjct: 55 RGFGFITFASEESVDAVLASPQIVDGKEIDCKRAVPRGAIQT---NETEGGDPGDNKVTS 111
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
+ + + GA T + G+F KIFVG LPQ T E LR +F ++G I +
Sbjct: 112 SVS---SSGAVTNNNSSGTFNA---------TKIFVGGLPQSCTDEKLREHFGKYGMIKN 159
Query: 131 VYV 133
+ V
Sbjct: 160 LSV 162
>gi|224089693|ref|XP_002308799.1| predicted protein [Populus trichocarpa]
gi|222854775|gb|EEE92322.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++++ H + G V +A P+ED
Sbjct: 39 KDRATGRARGFGFVVFADPAVAERVVMEKHLIDGRNVEAKKAVPREDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
TL + S G ++ KKIFVG L T D R+YF
Sbjct: 87 ------------------NTLNKNSSSVNGSPGPART--KKIFVGGLASTVTESDFRKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 DQFGVITDVVV 137
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
>gi|291237256|ref|XP_002738551.1| PREDICTED: TAR DNA binding protein-like [Saccoglossus kowalevskii]
Length = 311
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWF 139
G+K+FVGR+ ++ T EDL YF++FG ++DV++PK F F
Sbjct: 194 GRKVFVGRVTEDITKEDLYSYFTQFGEVVDVFIPKPFRF 232
>gi|47229790|emb|CAG06986.1| unnamed protein product [Tetraodon nigroviridis]
Length = 468
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
Query: 9 AHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAY--- 65
+ +G GF+ FA D+ E ++ H + G K + P+ S + +
Sbjct: 174 SSKGFGFVRFAEYDAQEKVISQRHMIDGRWCDCKFPNSKVNMVMPIHIYSLNIFSSVSSV 233
Query: 66 ---NAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
N IS + L L D P +K+FVGR ++ T +DLR++F
Sbjct: 234 FVGNCLISGVLFFHLLKQQPL-DEPLR-----------SRKVFVGRCTEDMTTDDLRQFF 281
Query: 123 SRFGRILDVYVPKRF 137
++G + DV++PK F
Sbjct: 282 MQYGEVTDVFIPKPF 296
>gi|183178950|gb|ACC43958.1| TAR-protein [Philodina roseola]
Length = 288
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK---RFWFCHLCGRSCSRSCF 152
+KIFV RLP T +DLR+YFS++G I DVY+PK F F + R F
Sbjct: 190 ARKIFVARLPDNITPDDLRQYFSKYGAIKDVYIPKPARSFAFVTFHDSNIVRQLF 244
>gi|357616936|gb|EHJ70495.1| hypothetical protein KGM_10405 [Danaus plexippus]
Length = 441
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ TA+DLR YFSRFG + DV+VP+ F
Sbjct: 205 KVFVGRCTEDMTADDLRDYFSRFGEVTDVFVPRPF 239
>gi|102140031|gb|ABF70162.1| RNA-binding protein, putative [Musa acuminata]
Length = 465
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S D+V+ ++++ HEL G V V RA PKE P+ R S GGY
Sbjct: 141 DHNTQRPRGFGFITYDSEDAVDKVLLNAFHELNGKMVEVKRAVPKEPSPGPIMRSSIGGY 200
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 31/131 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++ + H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFADPAVTERVVTEKHTIDGRMVEAKKAVPRDD------------- 85
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ +++ + + G+P PG KKIFVG L T D ++YF
Sbjct: 86 ---HQFLNKNSSSSIHGSPV----PGHT-----------KKIFVGGLSSTITEGDFKKYF 127
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 128 DQFGTITDVVV 138
>gi|328783809|ref|XP_392590.4| PREDICTED: TAR DNA-binding protein 43-like [Apis mellifera]
gi|340729558|ref|XP_003403067.1| PREDICTED: TAR DNA-binding protein 43-like [Bombus terrestris]
gi|350411720|ref|XP_003489432.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Bombus
impatiens]
gi|350411723|ref|XP_003489433.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Bombus
impatiens]
gi|380018789|ref|XP_003693304.1| PREDICTED: TAR DNA-binding protein 43-like [Apis florea]
gi|383859208|ref|XP_003705088.1| PREDICTED: TAR DNA-binding protein 43-like [Megachile rotundata]
Length = 467
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q++ K+FVGR ++ TA+DLR YFS++G + DV++PK F
Sbjct: 188 QQVPCKVFVGRCTEDLTADDLRDYFSKYGEVTDVFIPKPF 227
>gi|147783406|emb|CAN75218.1| hypothetical protein VITISV_003519 [Vitis vinifera]
Length = 482
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA E +++D H + G TV +A P++D
Sbjct: 39 RDRTTGRARGFGFVVFADPAVAERVVMDKHMIDGRTVEAKKAVPRDDQH----------- 87
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
L + GS +G + KKIFVG L T D ++YF
Sbjct: 88 -------------------LLNRNTGSIHGSPGPGRT--KKIFVGGLASTVTESDFKKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 DQFGTINDVVV 137
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++VE ++ T HEL G V V RA PKE
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVERVLHKTFHELNGKMVEVKRAVPKE 185
>gi|225460779|ref|XP_002274589.1| PREDICTED: uncharacterized protein LOC100267443 [Vitis vinifera]
Length = 478
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA E +++D H + G TV +A P++D
Sbjct: 39 RDRTTGRARGFGFVVFADPAVAERVVMDKHMIDGRTVEAKKAVPRDDQH----------- 87
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
L + GS +G + KKIFVG L T D ++YF
Sbjct: 88 -------------------LLNRNTGSIHGSPGPGRT--KKIFVGGLASTVTESDFKKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 DQFGTINDVVV 137
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++VE ++ T HEL G V V RA PKE
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVERVLHKTFHELNGKMVEVKRAVPKE 185
>gi|449443534|ref|XP_004139532.1| PREDICTED: uncharacterized protein LOC101217028 [Cucumis sativus]
gi|449505564|ref|XP_004162509.1| PREDICTED: uncharacterized LOC101217028 [Cucumis sativus]
Length = 477
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA + ++++ H + G TV +A P++D
Sbjct: 37 RDRATGRARGFGFVVFADPVAAARVVLEKHVIDGRTVEAKKAVPRDDQ------------ 84
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
I + LG+P R KKIFVG L T D ++YF
Sbjct: 85 -----NILSRNNTGILGSP--------------GPTRT-KKIFVGGLASTVTESDFKKYF 124
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I+DV V P+ F F
Sbjct: 125 DQFGTIVDVVVMYDHNTQRPRGFGFI 150
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
D ++ RG GFIT+ S +SVE ++ T HEL G V V RA PKE P
Sbjct: 138 DHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVPKESSPVP 188
>gi|293336544|ref|NP_001168743.1| uncharacterized protein LOC100382538 [Zea mays]
gi|223972773|gb|ACN30574.1| unknown [Zea mays]
gi|413936749|gb|AFW71300.1| hypothetical protein ZEAMMB73_007301 [Zea mays]
gi|413936750|gb|AFW71301.1| hypothetical protein ZEAMMB73_007301 [Zea mays]
Length = 384
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+
Sbjct: 88 KDKHTKMPRGFGFVTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREE------------- 134
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
N TR KIF+G LP T ++L+ +F
Sbjct: 135 --MNTKDGPKTR----------------------------KIFIGGLPASLTEDELKDHF 164
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++L+ + H GRS
Sbjct: 165 SLYGKVLE----HQIMLDHSTGRS 184
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE--DDFRPVGRMSHGGYGAYN 66
RG GF+TF S DSVE ++ + +LGG V + +A PK+ D GR S GG G +
Sbjct: 185 RGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDNIGNGRSSQGGGGYRS 244
Query: 67 AY 68
Y
Sbjct: 245 TY 246
>gi|294932585|ref|XP_002780346.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239890268|gb|EER12141.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 29/121 (23%)
Query: 11 RGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GF+T+A+ VEN + + H+L G V V+R+ +D + GG+G+ +
Sbjct: 10 RGFGFVTYATTGEVENCLANGPHQLNGKHVDVNRSQDPKDAHK-------GGWGSDRSGG 62
Query: 70 SAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL 129
+ D P KK+F G LPQ+ E LR++FS++G I+
Sbjct: 63 PSRRGGGG-------DDP--------------KKVFCGGLPQDCDTERLRQHFSQYGNIV 101
Query: 130 D 130
D
Sbjct: 102 D 102
>gi|241744067|ref|XP_002414227.1| tar DNA-binding protein, putative [Ixodes scapularis]
gi|215508081|gb|EEC17535.1| tar DNA-binding protein, putative [Ixodes scapularis]
Length = 204
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
G++S+ + +K+FVGR ++ T++DLR YFS+FG + DV++PK F
Sbjct: 72 GQASE-LSRKVFVGRCTEDLTSDDLRDYFSKFGEVTDVFIPKPF 114
>gi|67900918|ref|XP_680715.1| hypothetical protein AN7446.2 [Aspergillus nidulans FGSC A4]
gi|40742836|gb|EAA62026.1| hypothetical protein AN7446.2 [Aspergillus nidulans FGSC A4]
Length = 448
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 56/160 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 32 RDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDE------------- 78
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT +D +++F
Sbjct: 79 -----------------------------------QEKTSKIFVGGVSQEATEQDFKQFF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
+FGR++D + P+ F F + + S+
Sbjct: 104 MQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 143
>gi|295673172|ref|XP_002797132.1| heterogeneous nuclear ribonucleoprotein A1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282504|gb|EEH38070.1| heterogeneous nuclear ribonucleoprotein A1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 642
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVD-----RATPKEDDFRPVGRM 57
+D + RG GF+TF +V +MV H L G V + + ++ P+ R
Sbjct: 124 RDGATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIVGISFCNHYPQAKQAENTAPIWRA 183
Query: 58 SHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAED 117
S R + L T P R E Q KIFVG + QEAT +D
Sbjct: 184 SK-----------LRLRASRLTKGTQQIDPKRAIPRDE--QERTSKIFVGGVSQEATEQD 230
Query: 118 LRRYFSRFGRILDVYV 133
+++F +FGR++D +
Sbjct: 231 FKQFFMQFGRVVDATL 246
>gi|270011960|gb|EFA08408.1| hypothetical protein TcasGA2_TC006055 [Tribolium castaneum]
Length = 479
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q++ K+F+GR +E TA+DLR YF ++G + DV++PK F
Sbjct: 190 QQVPCKVFIGRCTEELTADDLREYFGKYGEVTDVFIPKPF 229
>gi|242064522|ref|XP_002453550.1| hypothetical protein SORBIDRAFT_04g007860 [Sorghum bicolor]
gi|241933381|gb|EES06526.1| hypothetical protein SORBIDRAFT_04g007860 [Sorghum bicolor]
Length = 391
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+
Sbjct: 89 KDKHTKMPRGFGFVTFSDPSVIDKVLEDDHVIDGRTVEVKRTVPREE------------- 135
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
T D P + +KIF+G LP T ++L+ +F
Sbjct: 136 ------------------MTTKDGPKT------------RKIFIGGLPPSLTEDELKDHF 165
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++ V + H GRS
Sbjct: 166 SSYGKV----VEHQIMLDHSTGRS 185
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE--DDFRPVGRMSH 59
D + RG GF+TF S DSVE ++ + +LGG V + +A PK+ D GR SH
Sbjct: 179 DHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSNGRSSH 238
Query: 60 GGYGAYNAY 68
GG G ++Y
Sbjct: 239 GGGGYRSSY 247
>gi|224064856|ref|XP_002301585.1| predicted protein [Populus trichocarpa]
gi|222843311|gb|EEE80858.1| predicted protein [Populus trichocarpa]
Length = 479
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 31/131 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ F+ E ++ + H + G V +A P+ DD + R S G
Sbjct: 39 KDRTTGRARGFGFVVFSDPSIAERVIKEKHSIDGRMVEAKKAVPR-DDQNMLSRNSGG-- 95
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+++ PG GR KKIFVG L T D R+YF
Sbjct: 96 -------------------SIHGSPGP--GRT-------KKIFVGGLASTVTESDFRKYF 127
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 128 DQFGLITDVVV 138
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S ++V+ +++ T HEL G V V RA PKE P R GGY
Sbjct: 141 DHNTQRPRGFGFITYDSEEAVDKVLMKTFHELNGKMVEVKRAVPKELSPGPS-RSPLGGY 199
>gi|115486383|ref|NP_001068335.1| Os11g0637700 [Oryza sativa Japonica Group]
gi|108864610|gb|ABA94921.2| RNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113645557|dbj|BAF28698.1| Os11g0637700 [Oryza sativa Japonica Group]
gi|215697828|dbj|BAG92021.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740693|dbj|BAG97349.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 467
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA E ++++ H + G V +A P++D
Sbjct: 39 RDRATGRARGFGFIVFADPAVAERVIMEKHMIDGRMVEAKKAVPRDDQH----------- 87
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
L GS +G S+ KKIFVG L T D R+YF
Sbjct: 88 -------------------ALSKSGGSAHGSPGPSRT--KKIFVGGLASTVTEADFRKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 EQFGTITDVVV 137
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S D+V+ + T HEL G V V RA PKE P R GG+
Sbjct: 140 DHNTQRPRGFGFITYDSEDAVDKALFKTFHELNGKMVEVKRAVPKELSPGPSMRSPVGGF 199
>gi|91087839|ref|XP_967837.1| PREDICTED: similar to TBPH CG10327-PA [Tribolium castaneum]
Length = 450
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q++ K+F+GR +E TA+DLR YF ++G + DV++PK F
Sbjct: 190 QQVPCKVFIGRCTEELTADDLREYFGKYGEVTDVFIPKPF 229
>gi|170057997|ref|XP_001864728.1| TAR DNA-binding protein 43 [Culex quinquefasciatus]
gi|167877238|gb|EDS40621.1| TAR DNA-binding protein 43 [Culex quinquefasciatus]
Length = 540
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+ + ++ KIF+GR+ ++ TA+D+R YFS++G + DV++PK F
Sbjct: 200 KDQMQHQMPSKIFLGRVTEDMTADDIREYFSKYGEVTDVFIPKPF 244
>gi|384251946|gb|EIE25423.1| hypothetical protein COCSUDRAFT_61641 [Coccomyxa subellipsoidea
C-169]
Length = 534
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSH 59
+PK + + ++G GF TF + + +E L H + G V +++A P RP S
Sbjct: 27 LPKHKSGR-NKGFGFTTFEAEEELERVLQAPEHIVEGVVVKINKAGP-----RPEYETSQ 80
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLR 119
S + A G +L G+ + R G +++VG +P E T ED+
Sbjct: 81 ENPQTLTKASSDTSNGA--GHASLGGCGGAGIATSSAHGR-GPRLYVGGVPDEITEEDII 137
Query: 120 RYFSRFGRILDVYVP-----KRFWFCHLC---GRSCSRSCFSKVSRNL 159
+F+++G ++DVY P KR +C + RS R+C ++ RN+
Sbjct: 138 EHFNKWGNVVDVYFPGKKGAKRVNYCFVTYDNWRSAQRAC-NQSERNI 184
Score = 35.8 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 116 EDLRRYFSRFGRILDVYVPKRFWFCHLCGRS 146
E L RYFS FG +LDVY+PK H GR+
Sbjct: 10 EQLNRYFSHFGNVLDVYLPK-----HKSGRN 35
>gi|294933824|ref|XP_002780863.1| single-stranded G-strand telomeric DNA-binding protein, putative
[Perkinsus marinus ATCC 50983]
gi|239890990|gb|EER12658.1| single-stranded G-strand telomeric DNA-binding protein, putative
[Perkinsus marinus ATCC 50983]
Length = 381
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 29/121 (23%)
Query: 11 RGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GF+T+A+ VEN + + H+L G V V+R+ +D + GG+G+ +
Sbjct: 114 RGFGFVTYATTGEVENCLANGPHQLNGKHVDVNRSQDPKDAHK-------GGWGSDRSGG 166
Query: 70 SAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL 129
+ D P KK+F G LPQ+ E LR++FS++G I+
Sbjct: 167 PSRRGGGG-------DDP--------------KKVFCGGLPQDCDTERLRQHFSQYGNIV 205
Query: 130 D 130
D
Sbjct: 206 D 206
>gi|297737532|emb|CBI26733.3| unnamed protein product [Vitis vinifera]
Length = 309
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA E +++D H + G TV +A P++D
Sbjct: 39 RDRTTGRARGFGFVVFADPAVAERVVMDKHMIDGRTVEAKKAVPRDDQH----------- 87
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
L + GS +G + KKIFVG L T D ++YF
Sbjct: 88 -------------------LLNRNTGSIHGSPGPGRT--KKIFVGGLASTVTESDFKKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 DQFGTINDVVV 137
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++VE ++ T HEL G V V RA PKE
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVERVLHKTFHELNGKMVEVKRAVPKE 185
>gi|357603649|gb|EHJ63861.1| hypothetical protein KGM_07603 [Danaus plexippus]
Length = 411
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ TA DLR YFS+FG + DV++PK F
Sbjct: 192 KVFVGRCTEDLTANDLREYFSQFGEVTDVFIPKPF 226
>gi|414590674|tpg|DAA41245.1| TPA: hypothetical protein ZEAMMB73_495774 [Zea mays]
Length = 470
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 41/146 (28%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA + E + ++ H + G V +A P++D
Sbjct: 39 RDRNTGRARGFGFVVFADSGIAERVTMEKHMIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A+ +++G+P G G + +KIFVG L T + RRYF
Sbjct: 87 ------SIASKNNSSIGSP----------GPGRT-----RKIFVGGLASNVTEVEFRRYF 125
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 126 EQFGVITDVVVMYDHNTQRPRGFGFI 151
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ L + HEL G V V RA PKE P+ R GG
Sbjct: 139 DHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPGPIARSPAGG 197
>gi|15292697|gb|AAK92717.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 494
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 30/131 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++ + H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ + + G+P+ G G + +KIFVG LP T D + YF
Sbjct: 87 ----NMVNRSNSSSIQGSPS---------GPGRT-----RKIFVGGLPSSVTESDFKTYF 128
Query: 123 SRFGRILDVYV 133
+FG DV V
Sbjct: 129 EQFGTTTDVVV 139
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++VE +++ T HEL G V V RA PKE
Sbjct: 142 DHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKE 187
>gi|296416057|ref|XP_002837697.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633580|emb|CAZ81888.1| unnamed protein product [Tuber melanosporum]
Length = 691
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 45/121 (37%), Gaps = 48/121 (39%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+TF +V +MV H L G + RA P+++
Sbjct: 209 RGFGFLTFKDPKTVNIVMVKEHYLDGKIIDPKRAIPRDE--------------------- 247
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
Q KIFVG + QEAT D R YF++FGR+LD
Sbjct: 248 ---------------------------QEKTSKIFVGGVSQEATETDFREYFTQFGRVLD 280
Query: 131 V 131
Sbjct: 281 A 281
>gi|328723850|ref|XP_003247957.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Acyrthosiphon
pisum]
gi|328723852|ref|XP_003247958.1| PREDICTED: TAR DNA-binding protein 43-like isoform 3 [Acyrthosiphon
pisum]
Length = 392
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
P S G G + K+FVGR+ ++ TA+D+R YFS+FG +++V+VPK
Sbjct: 180 PKSKEGNG---SELSGKVFVGRVTEDLTADDIREYFSKFGEVINVFVPK 225
>gi|328723854|ref|XP_001948745.2| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Acyrthosiphon
pisum]
Length = 377
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
P S G G + K+FVGR+ ++ TA+D+R YFS+FG +++V+VPK
Sbjct: 165 PKSKEGNG---SELSGKVFVGRVTEDLTADDIREYFSKFGEVINVFVPK 210
>gi|225447606|ref|XP_002272993.1| PREDICTED: uncharacterized protein LOC100246008 [Vitis vinifera]
Length = 478
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++ + H + G V +A PK+D
Sbjct: 39 KDRTTGRARGFGFVVFADPAVAERVIKEKHNIDGRMVEAKKAVPKDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
S +R + +++ PG GR +KIFVG L T D ++YF
Sbjct: 87 -------SILSRNSG----SIHGSPGP--GR-------TRKIFVGGLASTVTESDFKKYF 126
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 127 DQFGAITDVVVMYDHNTQRPRGFGFI 152
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 79/192 (41%), Gaps = 37/192 (19%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S ++V+ +++ T HEL G V V RA PKE P+ R GG+
Sbjct: 140 DHNTQRPRGFGFITYESEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPI-RSQLGGF 198
Query: 63 G-----------AYNAYISAAT----------RYAAL-GAPTLYDHPGSFYGRGESSQRI 100
AYN + +T R++ + G + + GS YG G +
Sbjct: 199 NYGLSRVNSFLSAYNQGYAPSTVGGYGVRMDGRFSPIAGGRSGFPPFGSGYGMGMN---- 254
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRF--WFCHLCGRSCSRSCFSKV 155
F L Q +GR L+ Y RF + G + S FS
Sbjct: 255 ----FEPGLSQSYGGSANFNNNLNYGRGLNPYYIGNTNRFNSTIGYDGGNGGNSSFFSSA 310
Query: 156 SRNLWTAGCNRF 167
+RNLW G F
Sbjct: 311 TRNLWGNGGLNF 322
>gi|147903976|ref|NP_001087778.1| MGC84815 protein [Xenopus laevis]
gi|51703946|gb|AAH81212.1| MGC84815 protein [Xenopus laevis]
Length = 291
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 44/132 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD S RG GF+TF A SV+ D H++ G V RA P+E+
Sbjct: 46 KDPRSNKSRGFGFVTFKEASSVDKAQADRPHKVDGKDVDSKRAMPREE------------ 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
++ +AA+ KKIFVG L ++ T EDL Y
Sbjct: 94 --------TSPEVHAAV-----------------------KKIFVGGLKKDVTNEDLAEY 122
Query: 122 FSRFGRILDVYV 133
F +FG + D +
Sbjct: 123 FGKFGNVTDASI 134
>gi|119480409|ref|XP_001260233.1| heterogeneous nuclear ribonucleoprotein HRP1 [Neosartorya fischeri
NRRL 181]
gi|119408387|gb|EAW18336.1| heterogeneous nuclear ribonucleoprotein HRP1 [Neosartorya fischeri
NRRL 181]
Length = 462
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 56/160 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 43 RDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDE------------- 89
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT ++ + +F
Sbjct: 90 -----------------------------------QEKTSKIFVGGVSQEATEQEFKEFF 114
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
++FGR++D + P+ F F + + S+
Sbjct: 115 TQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 154
>gi|157112076|ref|XP_001651782.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878175|gb|EAT42400.1| AAEL006057-PA [Aedes aegypti]
Length = 482
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 45/127 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +SV+ ++ V H L G + ATPK
Sbjct: 135 KDPITQRSRGFGFITFQEPNSVDKVLKVPIHTLDGKKIDPKHATPKN------------- 181
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
R ++ KKIFVG + Q+ +AE++R+Y
Sbjct: 182 -------------------------------RPKTQSNKTKKIFVGGVSQDTSAEEVRQY 210
Query: 122 FSRFGRI 128
FS+FG++
Sbjct: 211 FSQFGKV 217
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 222 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 270
>gi|119193228|ref|XP_001247220.1| hypothetical protein CIMG_00991 [Coccidioides immitis RS]
Length = 506
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 56/160 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++ R
Sbjct: 43 RDGATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDEQERT--------- 93
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + Q+A +D +++F
Sbjct: 94 ---------------------------------------SKIFVGGVSQDANEQDFKKFF 114
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
+FGR++D + P+ F F + +C S+
Sbjct: 115 MQFGRVVDATLMIDKDTGRPRGFGFVTFDSEAAVEACLSQ 154
>gi|224061141|ref|XP_002300356.1| predicted protein [Populus trichocarpa]
gi|222847614|gb|EEE85161.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA E ++++ H + G TV +A P++D
Sbjct: 39 RDRVTGRARGFGFVVFADPIVAERVIMEKHVVDGRTVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+I + + G+P G G + KKIFVG L T D ++YF
Sbjct: 87 -----HILSRNTSSIHGSP----------GPGRT-----KKIFVGGLASTVTENDFKKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 EQFGIITDVVV 137
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D + RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 140 DHNTLRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
>gi|260793326|ref|XP_002591663.1| hypothetical protein BRAFLDRAFT_223429 [Branchiostoma floridae]
gi|229276872|gb|EEN47674.1| hypothetical protein BRAFLDRAFT_223429 [Branchiostoma floridae]
Length = 431
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+ +K+F+GR ++ +AEDLR YF +FG + DV++PK F
Sbjct: 188 LSRKVFIGRCTEDMSAEDLRAYFQQFGEVTDVFIPKPF 225
>gi|356535448|ref|XP_003536257.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Glycine max]
Length = 471
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 26/123 (21%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ FA + ++ ++ D H + G TV +A +ED + + S GG
Sbjct: 47 RGFGFVVFADPNILDRVLEDKHVIDGRTVDAKKAFSRED--QQISVTSRGG--------- 95
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
+ S G KKIFVG LP T E R+YF +G + D
Sbjct: 96 ---------------NSNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGNVTD 140
Query: 131 VYV 133
V V
Sbjct: 141 VVV 143
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ + RG GFI+F + D+V+ ++ + H+L G V V RA PK+
Sbjct: 146 DQNTGRPRGFGFISFDTEDAVDRVLHKSFHDLNGKQVEVKRALPKD 191
>gi|326489793|dbj|BAK01877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 463
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 56/146 (38%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA E ++++ H + G V +A P++D
Sbjct: 39 RDRATGRARGFGFIVFADPAVAERVIMEKHMIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
L GS +G S+ KKIFVG L T D R YF
Sbjct: 87 ------------------QALSKSGGSAHGSPGPSRT--KKIFVGGLASTVTEADFRTYF 126
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 127 EQFGTITDVVVMYDHNTQRPRGFGFI 152
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ + T HEL G V V RA PKE P R GG
Sbjct: 140 DHNTQRPRGFGFITYDSEDAVDKALFKTFHELNGKMVEVKRAVPKELSPGPSMRSPAGG 198
>gi|225461983|ref|XP_002271592.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C [Vitis
vinifera]
gi|147768836|emb|CAN78130.1| hypothetical protein VITISV_036088 [Vitis vinifera]
Length = 348
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT+A V+ ++ DTH + G V + R PK
Sbjct: 52 KDRYTGQPRGFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPK--------------- 96
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G G+S KKIFVG +P T ++ + +F
Sbjct: 97 -----------------------------GSGQSKDFKTKKIFVGGVPSTVTEDEFKNFF 127
Query: 123 SRFGRILD 130
S++G++++
Sbjct: 128 SKYGKVVE 135
>gi|297606021|ref|NP_001057893.2| Os06g0566100 [Oryza sativa Japonica Group]
gi|53793272|dbj|BAD54495.1| putative Heterogeneous nuclear ribonucleoproteins A1 homolog [Oryza
sativa Japonica Group]
gi|53793315|dbj|BAD54536.1| putative Heterogeneous nuclear ribonucleoproteins A1 homolog [Oryza
sativa Japonica Group]
gi|215765227|dbj|BAG86924.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677149|dbj|BAF19807.2| Os06g0566100 [Oryza sativa Japonica Group]
Length = 285
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+ MS
Sbjct: 2 KDKHTKMPRGFGFVTFSDPSVIDKVLQDEHTIDGRTVEVKRTVPREE-------MSS--- 51
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
D P + +KIFVG +P T + L+ +F
Sbjct: 52 ---------------------KDGPKT------------RKIFVGGIPPSLTEDKLKEHF 78
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++++ + H GRS
Sbjct: 79 SSYGKVVE----HQIMLDHGTGRS 98
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48
D G+ RG GF+TF + D+VE +M + H+L G V + +A PK+
Sbjct: 92 DHGTGRSRGFGFVTFENEDAVERVMSEGRMHDLAGKQVEIKKAEPKK 138
>gi|296084992|emb|CBI28407.3| unnamed protein product [Vitis vinifera]
Length = 401
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++ + H + G V +A PK+D
Sbjct: 39 KDRTTGRARGFGFVVFADPAVAERVIKEKHNIDGRMVEAKKAVPKDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
S +R + +++ PG GR +KIFVG L T D ++YF
Sbjct: 87 -------SILSRNSG----SIHGSPGP--GR-------TRKIFVGGLASTVTESDFKKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 DQFGAITDVVV 137
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 75/174 (43%), Gaps = 30/174 (17%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S ++V+ +++ T HEL G V V RA PKE P+ R GG+
Sbjct: 140 DHNTQRPRGFGFITYESEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPI-RSQLGGF 198
Query: 63 G----AYNAYISAATRYAALGAPTLYDHPG-SFYGRGESSQRIGKKI-FVGRLPQEATAE 116
N+++SA Y AP+ G GR SQ G F L
Sbjct: 199 NYGLSRVNSFLSA---YNQGYAPSTVGGYGVRMDGRFSLSQSYGGSANFNNNL------- 248
Query: 117 DLRRYFSRFGRILDVYV---PKRF--WFCHLCGRSCSRSCFSKVSRNLWTAGCN 165
+GR L+ Y RF + G + S FS +RNLW A N
Sbjct: 249 -------NYGRGLNPYYIGNTNRFNSTIGYDGGNGGNSSFFSSATRNLWGAFGN 295
>gi|303312249|ref|XP_003066136.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240105798|gb|EER23991.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320040133|gb|EFW22067.1| heterogeneous nuclear ribonucleoprotein HRP1 [Coccidioides
posadasii str. Silveira]
Length = 495
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 56/160 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++ R
Sbjct: 32 RDGATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDEQERT--------- 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + Q+A +D +++F
Sbjct: 83 ---------------------------------------SKIFVGGVSQDANEQDFKKFF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
+FGR++D + P+ F F + +C S+
Sbjct: 104 MQFGRVVDATLMIDKDTGRPRGFGFVTFDSEAAVEACLSQ 143
>gi|296089958|emb|CBI39777.3| unnamed protein product [Vitis vinifera]
Length = 293
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT+A V+ ++ DTH + G V + R PK
Sbjct: 52 KDRYTGQPRGFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPK--------------- 96
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G G+S KKIFVG +P T ++ + +F
Sbjct: 97 -----------------------------GSGQSKDFKTKKIFVGGVPSTVTEDEFKNFF 127
Query: 123 SRFGRILD 130
S++G++++
Sbjct: 128 SKYGKVVE 135
>gi|240279923|gb|EER43428.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
capsulatus H143]
Length = 548
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++ R
Sbjct: 187 RDGATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDEQERT--------- 237
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEAT +D +++F
Sbjct: 238 ---------------------------------------SKIFVGGVSQEATEQDFKQFF 258
Query: 123 SRFGRILD 130
+FGR++D
Sbjct: 259 MQFGRVVD 266
>gi|125555768|gb|EAZ01374.1| hypothetical protein OsI_23407 [Oryza sativa Indica Group]
Length = 407
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+ MS
Sbjct: 124 KDKHTKMPRGFGFVTFSDPSVIDKVLQDEHTIDGRTVEVKRTVPREE-------MSS--- 173
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
D P + +KIFVG +P T + L+ +F
Sbjct: 174 ---------------------KDGPKT------------RKIFVGGIPPSLTEDKLKEHF 200
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++++ + H GRS
Sbjct: 201 SSYGKVVE----HQIMLDHGTGRS 220
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48
D G+ RG GF+TF + D+VE +M + H+L G V + +A PK+
Sbjct: 214 DHGTGRSRGFGFVTFENEDAVERVMSEGRMHDLAGKQVEIKKAEPKK 260
>gi|298708562|emb|CBJ30647.1| RNA-binding protein, putative [Ectocarpus siliculosus]
Length = 462
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 26/138 (18%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ F + S + + + H + G T+ V RA P+ D P+ R +
Sbjct: 102 RGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPR--DRAPLPR-------------A 146
Query: 71 AATRYAA--LGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
AA R +A G + G +G G + + KIFVG L QE D R YF++FG++
Sbjct: 147 AADRNSANARGGSQV----GGRHG-GMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKV 201
Query: 129 LDVYVPKRFWFCHLCGRS 146
D V + GRS
Sbjct: 202 EDAVV----MYDKKTGRS 215
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 11 RGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48
RG GFIT+ S D V +M THEL G +V V A P++
Sbjct: 216 RGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRD 254
>gi|242093370|ref|XP_002437175.1| hypothetical protein SORBIDRAFT_10g022380 [Sorghum bicolor]
gi|241915398|gb|EER88542.1| hypothetical protein SORBIDRAFT_10g022380 [Sorghum bicolor]
Length = 414
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ ++ RG GF+TF+ ++ ++ D H + G TV V R PKE+ MS
Sbjct: 132 KDKHTRMPRGFGFVTFSDPSVLDRVLEDAHVIDGRTVEVKRTVPKEE-------MSS--- 181
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
D P + KKIFVG +P T + L+ +F
Sbjct: 182 ---------------------KDGPKT------------KKIFVGGIPSSLTEDKLKEHF 208
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++ V + H GRS
Sbjct: 209 SSYGKV----VEHQIMLDHSTGRS 228
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE---DDFRPVGRMSHGG 61
RG GF+TF S D+VE +M + H+LGG V + +A PK+ D GR S GG
Sbjct: 229 RGFGFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKKPGGGDSSSNGRHSRGG 284
>gi|212528804|ref|XP_002144559.1| heterogeneous nuclear ribonucleoprotein HRP1 [Talaromyces marneffei
ATCC 18224]
gi|210073957|gb|EEA28044.1| heterogeneous nuclear ribonucleoprotein HRP1 [Talaromyces marneffei
ATCC 18224]
Length = 454
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 56/160 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 59 RDSATGRSRGFGFLTFRDPKTVNTVMVKEHYLDGKIIDPKRAIPRDE------------- 105
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT +D +++F
Sbjct: 106 -----------------------------------QEKTSKIFVGGVSQEATEQDFKQFF 130
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
+FGR++D + P+ F F + + S+
Sbjct: 131 MQFGRVVDATLMIDKDTGRPRGFGFVTFDSEAAVEATLSR 170
>gi|125597614|gb|EAZ37394.1| hypothetical protein OsJ_21732 [Oryza sativa Japonica Group]
Length = 344
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+ MS
Sbjct: 61 KDKHTKMPRGFGFVTFSDPSVIDKVLQDEHTIDGRTVEVKRTVPREE-------MSS--- 110
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
D P + +KIFVG +P T + L+ +F
Sbjct: 111 ---------------------KDGPKT------------RKIFVGGIPPSLTEDKLKEHF 137
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++++ + H GRS
Sbjct: 138 SSYGKVVE----HQIMLDHGTGRS 157
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48
D G+ RG GF+TF + D+VE +M + H+L G V + +A PK+
Sbjct: 151 DHGTGRSRGFGFVTFENEDAVERVMSEGRMHDLAGKQVEIKKAEPKK 197
>gi|357146558|ref|XP_003574035.1| PREDICTED: uncharacterized protein LOC100832671 [Brachypodium
distachyon]
Length = 449
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ +A +V+ +++ H L G TV V RA +E+ S
Sbjct: 47 RGFGFVVYADPAAVDAALLEPHTLDGRTVDVKRALSREEQ-----------------QAS 89
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
A P+ + G G ++S KKIFVG LP T ++ R+YF FG + D
Sbjct: 90 KAVN------PSTGRNTGGGGGGNDASGTRTKKIFVGGLPSSLTDDEFRQYFQTFGAVTD 143
Query: 131 VYV 133
V V
Sbjct: 144 VVV 146
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFITF S D+V+ ++ T H+LGG V V RA P+E
Sbjct: 149 DQTTQRPRGFGFITFDSEDAVDRVLHKTFHDLGGKMVEVKRALPRE 194
>gi|357619642|gb|EHJ72132.1| heterogeneous nuclear ribonucleoprotein A1 [Danaus plexippus]
Length = 307
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 43/130 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GFIT++ A V++ + H++ G V RA P+E+ RP
Sbjct: 57 KDPQTKRSRGFGFITYSRAHMVDDAQKNRPHKIDGRIVEPKRAVPREEIKRP-------- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
++S + KK+F+G + Q+ EDLR Y
Sbjct: 109 ---------------------------------DASATV-KKLFIGGIKQDIEEEDLREY 134
Query: 122 FSRFGRILDV 131
FS+FG I+ V
Sbjct: 135 FSKFGEIISV 144
>gi|18398061|ref|NP_566321.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16930693|gb|AAL32012.1|AF436830_1 AT3g07810/F17A17_15 [Arabidopsis thaliana]
gi|23297627|gb|AAN12995.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332641085|gb|AEE74606.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 494
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 30/131 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++ + H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ + + G+P G G + +KIFVG LP T D + YF
Sbjct: 87 ----NMVNRSNSSSIQGSPG---------GPGRT-----RKIFVGGLPSSVTESDFKTYF 128
Query: 123 SRFGRILDVYV 133
+FG DV V
Sbjct: 129 EQFGTTTDVVV 139
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++VE +++ T HEL G V V RA PKE
Sbjct: 142 DHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKE 187
>gi|30680456|ref|NP_850539.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332641086|gb|AEE74607.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 30/131 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++ + H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ + + G+P G G + +KIFVG LP T D + YF
Sbjct: 87 ----NMVNRSNSSSIQGSPG---------GPGRT-----RKIFVGGLPSSVTESDFKTYF 128
Query: 123 SRFGRILDVYV 133
+FG DV V
Sbjct: 129 EQFGTTTDVVV 139
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++VE +++ T HEL G V V RA PKE
Sbjct: 142 DHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKE 187
>gi|348041339|ref|NP_001231688.1| TAR DNA-binding protein 43 isoform 3 [Xenopus (Silurana)
tropicalis]
Length = 247
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 31/36 (86%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ +AE+LR++FS++G ++DV++PK F
Sbjct: 29 RKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPF 64
>gi|147789024|emb|CAN75779.1| hypothetical protein VITISV_012423 [Vitis vinifera]
Length = 345
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 44/126 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+T+A V++++ DTH + G V + R PK
Sbjct: 37 KDRYTGQPRGFGFVTYADPSVVDSVIEDTHVINGKQVEIKRTIPK--------------- 81
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G G+S KKIFVG LP T ++ + +F
Sbjct: 82 -----------------------------GSGQSKDFKTKKIFVGGLPSTVTEDEFKDFF 112
Query: 123 SRFGRI 128
S++G++
Sbjct: 113 SKYGKV 118
>gi|413943841|gb|AFW76490.1| hypothetical protein ZEAMMB73_698498 [Zea mays]
Length = 413
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ ++ RG GF+TF+ ++ ++ D H + G TV V R PKE+ MS
Sbjct: 133 KDKHTRMPRGFGFVTFSDPSVLDRVLEDEHVIDGRTVEVKRTVPKEE-------MSS--- 182
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
D P + KKIFVG +P T + L+ +F
Sbjct: 183 ---------------------KDGPKT------------KKIFVGGIPPSLTEDKLKEHF 209
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++ V + H GRS
Sbjct: 210 SSYGKV----VEHQIMLDHSTGRS 229
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE---DDFRPVGRMS 58
D + RG GF+TF S D+VE +M + H+LGG V + +A PK+ D GR S
Sbjct: 223 DHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKKPGVGDSSSNGRHS 282
Query: 59 HGG 61
GG
Sbjct: 283 RGG 285
>gi|226503497|ref|NP_001145761.1| uncharacterized protein LOC100279268 [Zea mays]
gi|219884331|gb|ACL52540.1| unknown [Zea mays]
Length = 413
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ ++ RG GF+TF+ ++ ++ D H + G TV V R PKE+ MS
Sbjct: 133 KDKHTRMPRGFGFVTFSDPSVLDRVLEDEHVIDGRTVEVKRTVPKEE-------MSS--- 182
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
D P + KKIFVG +P T + L+ +F
Sbjct: 183 ---------------------KDGPKT------------KKIFVGGIPPSLTEDKLKEHF 209
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++ V + H GRS
Sbjct: 210 SSYGKV----VEHQIMLDHSTGRS 229
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE---DDFRPVGRMS 58
D + RG GF+TF S D+VE +M + H+LGG V + +A PK+ D GR S
Sbjct: 223 DHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKKPGVGDSSSNGRHS 282
Query: 59 HGG 61
GG
Sbjct: 283 RGG 285
>gi|115477046|ref|NP_001062119.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|42408771|dbj|BAD10006.1| putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|113624088|dbj|BAF24033.1| Os08g0492100 [Oryza sativa Japonica Group]
gi|215765667|dbj|BAG87364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201366|gb|EEC83793.1| hypothetical protein OsI_29708 [Oryza sativa Indica Group]
gi|222640778|gb|EEE68910.1| hypothetical protein OsJ_27766 [Oryza sativa Japonica Group]
Length = 362
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 52/132 (39%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED----DFRPVGRMS 58
+D+ + RG GFIT+++ V+ +M D HE G V + R PK+ DF+
Sbjct: 56 RDKHTSQPRGFGFITYSNPAVVDRVMDDIHEFNGKQVEIKRTIPKDSVQSKDFKT----- 110
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDL 118
KKIFVG LPQ T +D
Sbjct: 111 -------------------------------------------KKIFVGGLPQALTEDDF 127
Query: 119 RRYFSRFGRILD 130
+ +F ++G ++D
Sbjct: 128 KHFFQKYGPVVD 139
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATPKEDDFRPV---GRM 57
+D +K RG GFI F+S V++L+ + + +L G+ V + +A PK+ P G
Sbjct: 144 RDHQTKRSRGFGFIVFSSDQVVDDLLANGNMIDLAGAKVEIKKAEPKKSSNPPPSSHGSA 203
Query: 58 SHGGYGAYNAYISAATRYAAL 78
S YG + S+ Y L
Sbjct: 204 SRSAYGRDSRGHSSGNDYGGL 224
>gi|297829340|ref|XP_002882552.1| hypothetical protein ARALYDRAFT_478119 [Arabidopsis lyrata subsp.
lyrata]
gi|297328392|gb|EFH58811.1| hypothetical protein ARALYDRAFT_478119 [Arabidopsis lyrata subsp.
lyrata]
Length = 495
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 30/131 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++ + H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ + + G+P G G + +KIFVG LP T D + YF
Sbjct: 87 ----NMVNRSNSSSIQGSPG---------GPGRT-----RKIFVGGLPSSVTESDFKTYF 128
Query: 123 SRFGRILDVYV 133
+FG DV V
Sbjct: 129 EQFGTTTDVVV 139
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++VE +++ T HEL G V V RA PKE
Sbjct: 142 DHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKE 187
>gi|6648193|gb|AAF21191.1|AC013483_15 putative RNA-binding protein [Arabidopsis thaliana]
Length = 492
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 30/131 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++ + H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ + + G+P G G + +KIFVG LP T D + YF
Sbjct: 87 ----NMVNRSNSSSIQGSPG---------GPGRT-----RKIFVGGLPSSVTESDFKTYF 128
Query: 123 SRFGRILDVYV 133
+FG DV V
Sbjct: 129 EQFGTTTDVVV 139
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++VE +++ T HEL G V V RA PKE
Sbjct: 142 DHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKE 187
>gi|195327757|ref|XP_002030584.1| GM24493 [Drosophila sechellia]
gi|194119527|gb|EDW41570.1| GM24493 [Drosophila sechellia]
Length = 343
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 62 YGAYNAYISA-ATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
+G+YNA + + R+ G P S RG +Q GK +FVGR ++ AEDLR
Sbjct: 155 FGSYNAQMRVLSKRHLIDGRWCEVKVPSS---RGIGNQVPGK-VFVGRCTEDIGAEDLRE 210
Query: 121 YFSRFGRILDVYVPKRF 137
YFS+FG +++V +PK F
Sbjct: 211 YFSQFGDVIEVVIPKPF 227
>gi|428671713|gb|EKX72628.1| RNA recognition motif domain containing protein [Babesia equi]
Length = 399
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 88/230 (38%), Gaps = 73/230 (31%)
Query: 2 PKDQG-SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE----------- 48
P+ Q S ++G GFI+F + ++++ + H + G V+VDRAT ++
Sbjct: 154 PRQQNNSNLNKGFGFISFDNEEAIQKVFETVPHIIMGREVIVDRATGQKYHSGAGGVNRR 213
Query: 49 ---------DDFRPVGRMS--HGGYG----------------------AYNAYISAATRY 75
D +R GR + GY YN I +
Sbjct: 214 PSGQPLYQRDSYRDPGRYKRHYDGYSDRPDKFPRRDRVDRPFPYQDREPYNPSIPPYRQN 273
Query: 76 AAL---GAPTLYDHPGSFYGRGESS--------------QRIGKKIFVGRLPQEATAEDL 118
AA P Y GS R ESS +R K+F+GR+ + T + L
Sbjct: 274 AATFDPNKPVSYVFSGS--ARNESSGDQYAPGTSARPQRERTTPKLFIGRISFDTTVQGL 331
Query: 119 RRYFSRFGRILDVYVP--------KRFWFCHLCGRSCSRSCFSKVSRNLW 160
R YFS+FG ++D Y+P K F F +S + ++++
Sbjct: 332 RAYFSQFGEVVDAYIPRDSYNQRSKGFGFLTFANKSSIHAVLEPNTKHVL 381
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---------FWFCHLCGRSCSRSCFS 153
+IF+ R+ EAT +DL YFS+FG + D Y P++ F F + F
Sbjct: 123 RIFITRIAFEATEDDLEEYFSKFGTVHDAYCPRQQNNSNLNKGFGFISFDNEEAIQKVFE 182
Query: 154 KV 155
V
Sbjct: 183 TV 184
>gi|242014750|ref|XP_002428048.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212512567|gb|EEB15310.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 371
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF SVEN++ V H L G + ATPK
Sbjct: 92 KDPVTQRSRGFGFITFEEPSSVENVLKVPVHTLDGKKIDPKHATPK-------------- 137
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
GRG+++ + KKIFVG + Q+ ++++++ Y
Sbjct: 138 ------------------------------GRGKTNGKT-KKIFVGGVSQDTSSDEVKVY 166
Query: 122 FSRFGRI 128
FS+FG++
Sbjct: 167 FSQFGKV 173
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+FVG L + ++E LR+YF FG I DV + K
Sbjct: 60 KLFVGGLSWQTSSEKLRQYFGMFGNITDVLIMK 92
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + ++V+ + + H + V +A PKE
Sbjct: 178 MLMDQQTKRHRGFGFVTFENEETVDRVCEIHFHNIKNKKVECKKAMPKE 226
>gi|312373745|gb|EFR21436.1| hypothetical protein AND_17061 [Anopheles darlingi]
Length = 609
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+ + ++ KIF+GRL ++ A+D+R YFS++G + DV++PK F
Sbjct: 192 KDQMQHQMPSKIFLGRLTEDINADDIRGYFSKYGEVADVFIPKPF 236
>gi|302121706|gb|ADK92872.1| hnRNP [Hypericum perforatum]
Length = 477
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 39/146 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFI FA + ++ + H + G V RA P++D P
Sbjct: 39 KDRTTGRARGFGFIVFADPSVADRVIKEKHNIDGRMVEAKRAIPRDDQNIP--------- 89
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ S ++ + + G DH +KIFVG L T D + YF
Sbjct: 90 ----SRNSVSSMHGSPGP----DHT--------------RKIFVGGLASTVTESDFKNYF 127
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I+D V P+ F F
Sbjct: 128 DQFGIIIDAVVMYDHNTQRPRGFGFI 153
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 141 DHNTQRPRGFGFITYDSDEAVDKVLTKTFHELNGKMVEVKRAVPKE 186
>gi|389610037|dbj|BAM18630.1| heterogeneous nuclear ribonucleoprotein 27c [Papilio xuthus]
Length = 318
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ TA+DLR YFS FG + DV+VP+ F
Sbjct: 206 KVFVGRCTEDMTADDLREYFSSFGEVTDVFVPRPF 240
>gi|225460542|ref|XP_002277226.1| PREDICTED: RNA-binding protein Musashi homolog 2 [Vitis vinifera]
Length = 348
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 44/126 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+T+A V++++ DTH + G V + R PK
Sbjct: 52 KDRYTGQPRGFGFVTYADPSVVDSVIEDTHVINGKQVEIKRTIPK--------------- 96
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G G+S KKIFVG LP T ++ + +F
Sbjct: 97 -----------------------------GSGQSKDFKTKKIFVGGLPSTVTEDEFKDFF 127
Query: 123 SRFGRI 128
S++G++
Sbjct: 128 SKYGKV 133
>gi|322711386|gb|EFZ02959.1| heterogeneous nuclear ribonucleoprotein HRP1 [Metarhizium
anisopliae ARSEF 23]
Length = 517
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 58/159 (36%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF A +V +MV H L G + RA P+++
Sbjct: 145 RDSTTGRSRGFGFLTFKDAKTVNIVMVKEHFLDGKIIDPKRAIPRDE------------- 191
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QE T ++ R YF
Sbjct: 192 -----------------------------------QEKTSKIFVGGVSQETTDQEFRDYF 216
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
++FGR++D + P+ F F + +C +
Sbjct: 217 AQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVEACIN 255
>gi|322694374|gb|EFY86205.1| heterogeneous nuclear ribonucleoprotein HRP1 [Metarhizium acridum
CQMa 102]
Length = 516
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 56/151 (37%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+TF A +V +MV H L G + RA P+++
Sbjct: 149 RGFGFLTFKDAKTVNIVMVKEHFLDGKIIDPKRAIPRDE--------------------- 187
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
Q KIFVG + QE T ++ R YF++FGR++D
Sbjct: 188 ---------------------------QEKTSKIFVGGVSQETTDQEFRDYFAQFGRVVD 220
Query: 131 VYV--------PKRFWFCHLCGRSCSRSCFS 153
+ P+ F F + +C +
Sbjct: 221 ATLMMDKDTGRPRGFGFVTFESEAGVEACIN 251
>gi|125575106|gb|EAZ16390.1| hypothetical protein OsJ_31855 [Oryza sativa Japonica Group]
Length = 463
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ F+ SV+ +VD H L G TV V RA +E+ A N
Sbjct: 47 RGFGFVVFSDPSSVDAALVDPHTLDGRTVDVKRALSREE---------QQAAKAANPSAG 97
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
G G G R KKIFVG LP T ++ R+YF +G + D
Sbjct: 98 GRHASGGGGGGGGAGGGGGGGGGDAGGART-KKIFVGGLPSNLTEDEFRQYFQTYGVVTD 156
Query: 131 VYV 133
V V
Sbjct: 157 VVV 159
>gi|405965286|gb|EKC30669.1| TAR DNA-binding protein 43 [Crassostrea gigas]
Length = 380
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 32/42 (76%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+++ + +K+FV R ++ TA+DL+ YFS++G + DV++PK F
Sbjct: 164 AAEMVSRKVFVARCTEDITADDLKSYFSKYGEVSDVFIPKPF 205
>gi|427795623|gb|JAA63263.1| Putative tar dna-binding protein 43, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
G++S+ + +K+FVGR ++ +++DLR YFS++G + DV++PK F
Sbjct: 121 GQASE-LSRKVFVGRCTEDLSSDDLRDYFSKYGEVTDVFIPKPF 163
>gi|407928279|gb|EKG21140.1| hypothetical protein MPH_01533 [Macrophomina phaseolina MS6]
Length = 571
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 57/158 (36%), Gaps = 56/158 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+E+
Sbjct: 135 RDGATGRSRGFGFLTFRDPKTVNIVMVKEHYLDGKIIDPKRAIPREE------------- 181
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT +D + +F
Sbjct: 182 -----------------------------------QEKTAKIFVGGVSQEATEQDFKSFF 206
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCF 152
+FGR++D + P+ F F G + +C
Sbjct: 207 EQFGRVIDATLMMDKDTGRPRGFGFVTFDGEAAVDACL 244
>gi|224114443|ref|XP_002316761.1| predicted protein [Populus trichocarpa]
gi|222859826|gb|EEE97373.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA E ++++ H + G TV +A P++D
Sbjct: 39 RDRATGRARGFGFVVFADLTVAERVIMEKHVIDGRTVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+I + + G+P G G + KKIFVG L T + ++YF
Sbjct: 87 -----HILSRSISNIHGSP----------GPGRT-----KKIFVGGLASTVTENEFKKYF 126
Query: 123 SRFGRILDVYV--------PKRFWFC 140
++G I+DV V P+ F F
Sbjct: 127 EQYGIIIDVVVMYDHNTQRPRGFGFI 152
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 185
>gi|452840783|gb|EME42721.1| hypothetical protein DOTSEDRAFT_73510 [Dothistroma septosporum
NZE10]
Length = 529
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H+L G + RA P+++ R
Sbjct: 134 RDGATGRSRGFGFLTFKDPKTVNTVMVKEHQLDGKLIDPKRAIPRDEQERTA-------- 185
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + Q+AT D + +F
Sbjct: 186 ----------------------------------------KIFVGGVSQDATESDFKEFF 205
Query: 123 SRFGRILD 130
+FGR+LD
Sbjct: 206 MKFGRVLD 213
>gi|410899380|ref|XP_003963175.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Takifugu
rubripes]
Length = 383
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+LR+YF ++G + DV++PK F
Sbjct: 188 RKVFVGRCTEDMTAEELRQYFMQYGEVTDVFIPKPF 223
>gi|348041333|ref|NP_989054.2| TAR DNA-binding protein 43 isoform 1 [Xenopus (Silurana)
tropicalis]
gi|123915948|sp|Q28F51.1|TADBP_XENTR RecName: Full=TAR DNA-binding protein 43; Short=TDP-43
gi|89269046|emb|CAJ81570.1| TAR DNA binding protein [Xenopus (Silurana) tropicalis]
Length = 409
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 31/36 (86%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ +AE+LR++FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPF 226
>gi|171694297|ref|XP_001912073.1| hypothetical protein [Podospora anserina S mat+]
gi|170947097|emb|CAP73902.1| unnamed protein product [Podospora anserina S mat+]
Length = 513
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 47 RDGATGRSRGFGFLTFKDPKTVNIVMVKEHYLDGKIIDPKRAIPRDE------------- 93
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QE T + R YF
Sbjct: 94 -----------------------------------QEKTSKIFVGGVSQETTDHEFREYF 118
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
++FGR++D + P+ F F + +C S
Sbjct: 119 AQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVEACLS 157
>gi|38174066|gb|AAH61336.1| TAR DNA-binding protein 43 [Xenopus (Silurana) tropicalis]
Length = 407
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 31/36 (86%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ +AE+LR++FS++G ++DV++PK F
Sbjct: 189 RKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPF 224
>gi|115482462|ref|NP_001064824.1| Os10g0470900 [Oryza sativa Japonica Group]
gi|10716605|gb|AAG21903.1|AC026815_7 putative RNA binding protein [Oryza sativa Japonica Group]
gi|31432618|gb|AAP54226.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113639433|dbj|BAF26738.1| Os10g0470900 [Oryza sativa Japonica Group]
Length = 464
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ F+ SV+ +VD H L G TV V RA +E+ A N
Sbjct: 47 RGFGFVVFSDPSSVDAALVDPHTLDGRTVDVKRALSREE---------QQAAKAANPSAG 97
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
G G G R KKIFVG LP T ++ R+YF +G + D
Sbjct: 98 GRHASGGGGGGGGAGGGGGGGGGDAGGART-KKIFVGGLPSNLTEDEFRQYFQTYGVVTD 156
Query: 131 VYV 133
V V
Sbjct: 157 VVV 159
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFITF + D+V+ ++ T H+L G V V RA P+E
Sbjct: 162 DQNTQRPRGFGFITFDAEDAVDRVLHKTFHDLSGKMVEVKRALPRE 207
>gi|378734179|gb|EHY60638.1| hypothetical protein HMPREF1120_08590 [Exophiala dermatitidis
NIH/UT8656]
Length = 455
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 55/159 (34%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 32 RDSATGRSRGFGFLTFKDPKTVNTVMVKEHFLDGKIIDPKRAIPRDE------------- 78
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + Q+AT ED +F
Sbjct: 79 -----------------------------------QEKTAKIFVGGVSQDATEEDFESFF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
++FGR++D + P+ F F + C
Sbjct: 104 AQFGRVIDATLMMDKDTGRPRGFGFVTFDSDAAVERCLE 142
>gi|358396002|gb|EHK45389.1| hypothetical protein TRIATDRAFT_131648 [Trichoderma atroviride IMI
206040]
Length = 405
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 58/159 (36%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D S RG GF+TF A +V +MV H L G + RA P+++
Sbjct: 32 RDSSSGRSRGFGFLTFKDAKTVNIVMVKEHFLDGKIIDPKRAIPRDE------------- 78
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + Q+ T ++ R YF
Sbjct: 79 -----------------------------------QEKTSKIFVGGVSQDTTDQEFREYF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
++FGR++D + P+ F F + +C +
Sbjct: 104 AQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVDACIN 142
>gi|427797249|gb|JAA64076.1| Putative tar dna-binding protein 43, partial [Rhipicephalus
pulchellus]
Length = 521
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
G++S+ + +K+FVGR ++ +++DLR YFS++G + DV++PK F
Sbjct: 222 GQASE-LSRKVFVGRCTEDLSSDDLRDYFSKYGEVTDVFIPKPF 264
>gi|427797245|gb|JAA64074.1| Putative tar dna-binding protein 43, partial [Rhipicephalus
pulchellus]
Length = 517
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
G++S+ + +K+FVGR ++ +++DLR YFS++G + DV++PK F
Sbjct: 218 GQASE-LSRKVFVGRCTEDLSSDDLRDYFSKYGEVTDVFIPKPF 260
>gi|297790889|ref|XP_002863329.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309164|gb|EFH39588.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 431
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E +++ H + G V +A P++D H +
Sbjct: 39 KDRATGRARGFGFVVFADPIVAERVVLLKHIIDGKIVEAKKAVPRDD---------HAVF 89
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
N+ + G+P G S+ KKIFVG L T + ++YF
Sbjct: 90 NKSNSSLQ--------GSP------------GPSTT---KKIFVGGLASSVTEAEFKKYF 126
Query: 123 SRFGRILDVYV 133
++FG I DV V
Sbjct: 127 AQFGMITDVVV 137
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFI++ S D+V+ ++ T HEL G V V A PKE
Sbjct: 140 DHRTQRPRGFGFISYDSEDAVDKVLQKTFHELNGKMVEVKLAVPKE 185
>gi|82538759|ref|XP_723811.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478234|gb|EAA15376.1| RNA recognition motif, putative [Plasmodium yoelii yoelii]
Length = 498
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+IFV RLP E +DL +YFS++G+I+D+YV K
Sbjct: 215 RIFVTRLPFEVNKKDLEKYFSKYGKIIDIYVSKNL 249
>gi|20977028|gb|AAM33247.1| mitotic phosphoprotein 39 [Xenopus laevis]
Length = 412
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 31/36 (86%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ +AE+LR++FS++G ++DV++PK F
Sbjct: 190 RKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPF 225
>gi|356576454|ref|XP_003556346.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Glycine max]
Length = 476
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 56/144 (38%), Gaps = 42/144 (29%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ FA + ++ ++ D H + G TV +A +ED IS
Sbjct: 47 RGFGFVVFADPNILDRVLEDKHVIDGRTVDAKKAFSREDQ-----------------QIS 89
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIG----KKIFVGRLPQEATAEDLRRYFSRFG 126
+R G G +S+ G KKIFVG LP T E R YF +G
Sbjct: 90 VTSR-------------GGNSNSGMNSENGGNIRTKKIFVGGLPPTLTEEKFRLYFESYG 136
Query: 127 RILDVYV--------PKRFWFCHL 142
+ DV V P+ F F
Sbjct: 137 HVTDVVVMYDQNTGRPRGFGFISF 160
Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRM 57
DQ + RG GFI+F + ++V+ ++ + H+L G V V RA PK+ + GRM
Sbjct: 146 DQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRM 200
>gi|259483749|tpe|CBF79395.1| TPA: heterogeneous nuclear ribonucleoprotein HRP1 (AFU_orthologue;
AFUA_2G06090) [Aspergillus nidulans FGSC A4]
Length = 559
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 143 RDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDE------------- 189
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT +D +++F
Sbjct: 190 -----------------------------------QEKTSKIFVGGVSQEATEQDFKQFF 214
Query: 123 SRFGRILD 130
+FGR++D
Sbjct: 215 MQFGRVID 222
>gi|85101893|ref|XP_961230.1| hypothetical protein NCU04239 [Neurospora crassa OR74A]
gi|11595517|emb|CAC18311.1| related to heterogeneous nuclear ribonucleoprotein [Neurospora
crassa]
gi|28922772|gb|EAA31994.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 503
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 32 RDGATGRSRGFGFLTFKDPKTVNIVMVKEHYLDGKIIDPKRAIPRDE------------- 78
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QE T + R YF
Sbjct: 79 -----------------------------------QEKTSKIFVGGVSQETTDHEFREYF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
++FGR++D + P+ F F + +C S
Sbjct: 104 AQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVEACLS 142
>gi|112983234|ref|NP_001037606.1| TAR DNA binding protein homolog [Bombyx mori]
gi|95115208|gb|ABF55970.1| TBPH [Bombyx mori]
Length = 286
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP---KRFWFCHLCGRSCSRS------CF 152
+K+FVGR + TAEDLR YF FG++ DV+VP + F F +RS
Sbjct: 173 RKVFVGRCTENITAEDLREYFGSFGQVTDVFVPRPFRAFSFVTFLDPEVARSLCGQDHII 232
Query: 153 SKVSRNLWTAGCNRFSHTT 171
VS N+ TA R TT
Sbjct: 233 KGVSVNISTASPKRERSTT 251
>gi|405960878|gb|EKC26752.1| TAR DNA-binding protein 43 [Crassostrea gigas]
Length = 420
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+S + +K+F+ R ++ TA+DL +YFS+FG + DV++PK F
Sbjct: 205 QSGPPMNRKVFIARCSEDITADDLHKYFSKFGEVSDVFIPKPF 247
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 94 GESSQRIGKK----IFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
G ++R+ KK + V LP ++T ED+R+YFS+FG +L V V +
Sbjct: 114 GSKTRRMDKKRCVDLIVLGLPWKSTEEDMRKYFSQFGELLLVQVKR 159
>gi|347970001|ref|XP_309663.5| AGAP003497-PA [Anopheles gambiae str. PEST]
gi|333466662|gb|EAA05403.6| AGAP003497-PA [Anopheles gambiae str. PEST]
Length = 569
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 33/45 (73%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+ ++ ++ KIF+GRL ++ ++D+R YFS++G + DV++PK F
Sbjct: 192 KDQTQHQMPSKIFLGRLTEDINSDDIRDYFSKYGEVTDVFIPKPF 236
>gi|244790069|ref|NP_001156444.1| TAR DNA binding protein-like [Acyrthosiphon pisum]
gi|239792762|dbj|BAH72685.1| ACYPI004992 [Acyrthosiphon pisum]
Length = 333
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
++ KIFVGRL ++ + DL +YFS++G I DV++PK F
Sbjct: 187 KVPHKIFVGRLTEDISEPDLSKYFSQYGEITDVFIPKPF 225
>gi|302771077|ref|XP_002968957.1| hypothetical protein SELMODRAFT_68338 [Selaginella moellendorffii]
gi|302816651|ref|XP_002990004.1| hypothetical protein SELMODRAFT_48637 [Selaginella moellendorffii]
gi|300142315|gb|EFJ09017.1| hypothetical protein SELMODRAFT_48637 [Selaginella moellendorffii]
gi|300163462|gb|EFJ30073.1| hypothetical protein SELMODRAFT_68338 [Selaginella moellendorffii]
Length = 162
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ S RG GF+TFA +D + ++ D H L G TV R+ P+E
Sbjct: 34 RDRSSGNPRGFGFVTFADSDVCDRVLRDKHVLDGRTVECKRSIPRE-------------- 79
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ G T KKIFVG +P T E+ + YF
Sbjct: 80 ----------SMLVVKGPKT-------------------KKIFVGGIPPSITEEEFKAYF 110
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S FG +++ + + H GRS
Sbjct: 111 SSFGNVIEHQIMQD----HNTGRS 130
>gi|170042573|ref|XP_001848995.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
gi|167866108|gb|EDS29491.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
Length = 426
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +SV+ ++ V H L G + ATPK
Sbjct: 200 KDPITQRSRGFGFITFQEPNSVDKVLKVPIHTLDGKKIDPKHATPK-------------- 245
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
R ++ KKIFVG + Q+ +AE++++Y
Sbjct: 246 ------------------------------NRPKTQSNKTKKIFVGGVSQDTSAEEVKQY 275
Query: 122 FSRFGRILDVYV 133
FS+FG++ + +
Sbjct: 276 FSQFGKVEETVM 287
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF D V+ + + H + V +A PKE
Sbjct: 287 MLMDQQTKRHRGFGFVTFEHEDVVDRVCEIHFHTIKNKKVECKKAQPKE 335
>gi|449444504|ref|XP_004140014.1| PREDICTED: uncharacterized protein LOC101222391 [Cucumis sativus]
gi|449505107|ref|XP_004162378.1| PREDICTED: uncharacterized protein LOC101227668 [Cucumis sativus]
Length = 476
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 56/146 (38%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFI FA + ++ + H + G V RA P+ D VGR S
Sbjct: 39 KDRTTGRGRGFGFIVFADPSVADRVIREKHNIDGRMVEAKRAVPRNDQ-NIVGRTS---- 93
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G+ + PG +KIFVG L T + + YF
Sbjct: 94 ----------------GSINVSPGPGRT-----------RKIFVGGLASTVTESEFKNYF 126
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 127 DQFGTITDVVVMYDHNTLRPRGFGFI 152
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
RG GFIT+ S ++VE +++ T HEL G V V RA PKE P R GGY
Sbjct: 147 RGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRAVPKELSPGPS-RSPLGGY 198
>gi|195590439|ref|XP_002084953.1| GD12565 [Drosophila simulans]
gi|194196962|gb|EDX10538.1| GD12565 [Drosophila simulans]
Length = 319
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 62 YGAYNAYISA-ATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
+G+Y+A + + R+ G P S RG +Q GK +FVGR ++ AEDLR
Sbjct: 155 FGSYDAQMRVLSKRHLIDGRWCEVKVPSS---RGIGNQVPGK-VFVGRCTEDIDAEDLRE 210
Query: 121 YFSRFGRILDVYVPKRF 137
YFS+FG +++V +PK F
Sbjct: 211 YFSQFGEVIEVVIPKPF 227
>gi|350645464|emb|CCD59816.1| tar DNA-binding protein, putative [Schistosoma mansoni]
Length = 450
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+ +GRL ++ + E LR++FS++GR+ DV++PK F
Sbjct: 191 QEVSRKVHIGRLTEDISPEALRQHFSQYGRVCDVFIPKPF 230
>gi|256080305|ref|XP_002576422.1| tar DNA-binding protein [Schistosoma mansoni]
Length = 446
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+ +GRL ++ + E LR++FS++GR+ DV++PK F
Sbjct: 191 QEVSRKVHIGRLTEDISPEALRQHFSQYGRVCDVFIPKPF 230
>gi|256080307|ref|XP_002576423.1| tar DNA-binding protein [Schistosoma mansoni]
gi|350645467|emb|CCD59819.1| tar DNA-binding protein, putative [Schistosoma mansoni]
Length = 457
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+ +GRL ++ + E LR++FS++GR+ DV++PK F
Sbjct: 191 QEVSRKVHIGRLTEDISPEALRQHFSQYGRVCDVFIPKPF 230
>gi|302509632|ref|XP_003016776.1| hypothetical protein ARB_05069 [Arthroderma benhamiae CBS 112371]
gi|291180346|gb|EFE36131.1| hypothetical protein ARB_05069 [Arthroderma benhamiae CBS 112371]
Length = 489
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D S RG GF+TF +V +MV H L G + RA P+++ R
Sbjct: 32 RDGASGRSRGFGFLTFTDPKTVNTVMVKEHYLDGKIIDPKRAIPRDEQER---------- 81
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEAT ++ +++F
Sbjct: 82 --------------------------------------TSKIFVGGVSQEATEQEFKQFF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
+FGR++D + P+ F F + + S
Sbjct: 104 MQFGRVVDATLMIDKDTGRPRGFGFVTFDSEAAVEATLS 142
>gi|296081021|emb|CBI18525.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 44/126 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+T+A V++++ DTH + G V + R PK
Sbjct: 52 KDRYTGQPRGFGFVTYADPSVVDSVIEDTHVINGKQVEIKRTIPK--------------- 96
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G G+S KKIFVG LP T ++ + +F
Sbjct: 97 -----------------------------GSGQSKDFKTKKIFVGGLPSTVTEDEFKDFF 127
Query: 123 SRFGRI 128
S++G++
Sbjct: 128 SKYGKV 133
>gi|327303046|ref|XP_003236215.1| heterogeneous nuclear ribonucleoprotein HRP1 [Trichophyton rubrum
CBS 118892]
gi|326461557|gb|EGD87010.1| heterogeneous nuclear ribonucleoprotein HRP1 [Trichophyton rubrum
CBS 118892]
Length = 489
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D S RG GF+TF +V +MV H L G + RA P+++ R
Sbjct: 32 RDGASGRSRGFGFLTFTDPKTVNTVMVKEHYLDGKIIDPKRAIPRDEQER---------- 81
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEAT ++ +++F
Sbjct: 82 --------------------------------------TSKIFVGGVSQEATEQEFKQFF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
+FGR++D + P+ F F + + S
Sbjct: 104 MQFGRVVDATLMIDKDTGRPRGFGFVTFDSEAAVEATLS 142
>gi|256080309|ref|XP_002576424.1| tar DNA-binding protein [Schistosoma mansoni]
gi|350645465|emb|CCD59817.1| tar DNA-binding protein, putative [Schistosoma mansoni]
Length = 321
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+ +GRL ++ + E LR++FS++GR+ DV++PK F
Sbjct: 95 QEVSRKVHIGRLTEDISPEALRQHFSQYGRVCDVFIPKPF 134
>gi|348571397|ref|XP_003471482.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Cavia
porcellus]
Length = 413
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR + TA++LR++FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTDDMTADELRQFFSQYGEVVDVFIPKPF 226
>gi|238007140|gb|ACR34605.1| unknown [Zea mays]
gi|413926095|gb|AFW66027.1| hypothetical protein ZEAMMB73_185087 [Zea mays]
Length = 366
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+ G +
Sbjct: 70 KDKHTKMPRGFGFVTFSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMITKDGPKT---- 125
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+KIF+G LP T ++L+ +F
Sbjct: 126 ---------------------------------------RKIFIGGLPPSLTEDELKDHF 146
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G + V + H GRS
Sbjct: 147 SSYGNV----VEHQIMLDHSTGRS 166
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE--DDFRPVGRMSH 59
D + RG GFITF S DSVE ++ + +LGG V + +A PK+ D GR +H
Sbjct: 160 DHSTGRSRGFGFITFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSNGRSNH 219
Query: 60 GGYGAY 65
GG GAY
Sbjct: 220 GG-GAY 224
>gi|255563582|ref|XP_002522793.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
gi|223538031|gb|EEF39644.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
Length = 348
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT+A V+ ++ DTH + G V + R PK
Sbjct: 52 KDRYTGQPRGFGFITYADPSVVDKVIEDTHVIHGKQVEIKRTIPK--------------- 96
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G G+S KKIFVG +P T ++ + +F
Sbjct: 97 -----------------------------GSGQSKDFKTKKIFVGGIPSSVTEDEFKGFF 127
Query: 123 SRFGRILD 130
S++G++++
Sbjct: 128 SKYGQVVE 135
>gi|390341916|ref|XP_789716.3| PREDICTED: TAR DNA-binding protein 43-like [Strongylocentrotus
purpuratus]
Length = 505
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWT 161
KK+F+GRL + T EDL FS++G ++DV++PK F + S+ V +L
Sbjct: 206 KKLFIGRLTSDTTKEDLFDIFSKYGEVVDVFIPKPFRGFAFVTMNSSKDADEIVGEDLII 265
Query: 162 AG 163
G
Sbjct: 266 KG 267
>gi|239051430|ref|NP_001131946.2| uncharacterized protein LOC100193339 [Zea mays]
gi|194695014|gb|ACF81591.1| unknown [Zea mays]
gi|223947685|gb|ACN27926.1| unknown [Zea mays]
gi|238908636|gb|ACF80580.2| unknown [Zea mays]
gi|413926096|gb|AFW66028.1| heterogeneous nuclear ribonucleoprotein A3 isoform 1 [Zea mays]
gi|413926097|gb|AFW66029.1| heterogeneous nuclear ribonucleoprotein A3 isoform 2 [Zea mays]
gi|413926098|gb|AFW66030.1| heterogeneous nuclear ribonucleoprotein A3 isoform 3 [Zea mays]
Length = 384
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+ G +
Sbjct: 88 KDKHTKMPRGFGFVTFSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMITKDGPKT---- 143
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+KIF+G LP T ++L+ +F
Sbjct: 144 ---------------------------------------RKIFIGGLPPSLTEDELKDHF 164
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G + V + H GRS
Sbjct: 165 SSYGNV----VEHQIMLDHSTGRS 184
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE--DDFRPVGRMSH 59
D + RG GFITF S DSVE ++ + +LGG V + +A PK+ D GR +H
Sbjct: 178 DHSTGRSRGFGFITFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSNGRSNH 237
Query: 60 GGYGAY 65
GG GAY
Sbjct: 238 GG-GAY 242
>gi|399218473|emb|CCF75360.1| unnamed protein product [Babesia microti strain RI]
Length = 518
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 68 YISAATRYAALGAPTLYD--HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRF 125
Y S A Y P YD P + S+R+ K+FVGR+ + T +R YF RF
Sbjct: 390 YSSTAQSYNNNYEPQGYDPSRPTTQGSDTLESKRLKNKLFVGRMRNDTTVATMRNYFERF 449
Query: 126 GRILDVYVPK 135
G ++D Y+PK
Sbjct: 450 GELIDAYIPK 459
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
G+ R +IFV R+P EAT++D+ YF +FG + D Y PK+ HL
Sbjct: 114 GDRVNRDRYRIFVTRIPFEATSDDIENYFKQFGEVEDAYCPKQPGKAHL 162
>gi|195628644|gb|ACG36152.1| heterogeneous nuclear ribonucleoprotein A3 [Zea mays]
Length = 384
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+ G +
Sbjct: 88 KDKHTKMPRGFGFVTFSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMITKDGPKT---- 143
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+KIF+G LP T ++L+ +F
Sbjct: 144 ---------------------------------------RKIFIGGLPPSLTEDELKDHF 164
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G + V + H GRS
Sbjct: 165 SSYGNV----VEHQIMLDHSTGRS 184
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE--DDFRPVGRMSHGGYGAY 65
RG GF+TF S DSVE ++ + +LGG V + +A PK+ D GR +HGG GAY
Sbjct: 185 RGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSNGRSNHGG-GAY 242
>gi|256080303|ref|XP_002576421.1| tar DNA-binding protein [Schistosoma mansoni]
gi|350645466|emb|CCD59818.1| tar DNA-binding protein, putative [Schistosoma mansoni]
Length = 417
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+ +GRL ++ + E LR++FS++GR+ DV++PK F
Sbjct: 191 QEVSRKVHIGRLTEDISPEALRQHFSQYGRVCDVFIPKPF 230
>gi|410899384|ref|XP_003963177.1| PREDICTED: TAR DNA-binding protein 43-like isoform 3 [Takifugu
rubripes]
Length = 310
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+LR+YF ++G + DV++PK F
Sbjct: 204 RKVFVGRCTEDMTAEELRQYFMQYGEVTDVFIPKPF 239
>gi|326527725|dbj|BAK08137.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528387|dbj|BAJ93382.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 453
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 53/123 (43%), Gaps = 20/123 (16%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ +A SV+ + + H L G TV V RA +E+
Sbjct: 47 RGFGFVVYADPASVDAALQEPHTLDGRTVDVKRALSREEQ-------------------- 86
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
AT+ A G G G++ KKIFVG LP T E+ R+YF FG + D
Sbjct: 87 QATKAVNPSAGRNAGGGGGGGGGGDAGGARTKKIFVGGLPSSLTDEEFRQYFQTFGAVTD 146
Query: 131 VYV 133
V V
Sbjct: 147 VVV 149
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFITF S D+V+ ++ T H+LGG V V RA P+E
Sbjct: 152 DQTTQRPRGFGFITFDSEDAVDRVLHKTFHDLGGKMVEVKRALPRE 197
>gi|242069255|ref|XP_002449904.1| hypothetical protein SORBIDRAFT_05g025410 [Sorghum bicolor]
gi|241935747|gb|EES08892.1| hypothetical protein SORBIDRAFT_05g025410 [Sorghum bicolor]
Length = 450
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA ++++++ H + G V +A ++D
Sbjct: 39 RDRATGRSRGFGFIMFADPAVAKHVIMEKHMIDGRMVEAKKAIARDDHH----------- 87
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+L + GS +G R KKIFVG L T ED+ ++F
Sbjct: 88 -------------------SLNNIHGSAHGLQRPKHR--KKIFVGGLASNVTKEDVIKHF 126
Query: 123 SRFGRILDVYV 133
+FG I+DV V
Sbjct: 127 KQFGTIIDVVV 137
>gi|357156001|ref|XP_003577309.1| PREDICTED: uncharacterized protein LOC100846541 [Brachypodium
distachyon]
Length = 463
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 55/146 (37%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA E ++++ H + G V +A P++D
Sbjct: 39 RDRATGRARGFGFIVFADPAVAERVIMEKHMIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
L GS +G S+ KKIFVG L D R YF
Sbjct: 87 ------------------QALSKSGGSTHGSPGPSRT--KKIFVGGLASTVNEADFRTYF 126
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 127 EQFGTITDVVVMYDHNTQRPRGFGFI 152
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S ++V+ + T HEL G V V RA PKE P R GG
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVDKALFKTFHELNGKMVEVKRAVPKELSPGPSMRSPAGG 198
>gi|325093053|gb|EGC46363.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
capsulatus H88]
Length = 687
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++ R
Sbjct: 187 RDGATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDEQERT--------- 237
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEAT +D +++F
Sbjct: 238 ---------------------------------------SKIFVGGVSQEATEQDFKQFF 258
Query: 123 SRFGRILD 130
+FGR++D
Sbjct: 259 MQFGRVVD 266
>gi|453084738|gb|EMF12782.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 536
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++ R
Sbjct: 135 RDGATGRSRGFGFLTFRDPKTVNTVMVKEHSLDGKLIDPKRAIPRDEQERTA-------- 186
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + Q+AT +D +F
Sbjct: 187 ----------------------------------------KIFVGGVSQDATEQDFEAFF 206
Query: 123 SRFGRILD 130
+FGR+LD
Sbjct: 207 QKFGRVLD 214
>gi|296206694|ref|XP_002750326.1| PREDICTED: TAR DNA-binding protein 43 isoform 2 [Callithrix
jacchus]
gi|403289910|ref|XP_003936082.1| PREDICTED: TAR DNA-binding protein 43 [Saimiri boliviensis
boliviensis]
Length = 414
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR++FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTEDELRQFFSQYGEVMDVFIPKPF 226
>gi|169613076|ref|XP_001799955.1| hypothetical protein SNOG_09668 [Phaeosphaeria nodorum SN15]
gi|160702644|gb|EAT82933.2| hypothetical protein SNOG_09668 [Phaeosphaeria nodorum SN15]
Length = 453
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 52/153 (33%), Gaps = 56/153 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF V +MV H L G + RA P+E+
Sbjct: 59 RDSATGRSRGFGFLTFRDPKCVNTVMVKEHYLDGKIIDPKRAIPREE------------- 105
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT ED +F
Sbjct: 106 -----------------------------------QERTSKIFVGGVSQEATEEDFTNFF 130
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSC 147
FGR++D + P+ F F G +
Sbjct: 131 KSFGRVVDATLMMDKETGRPRGFGFVTFDGDAA 163
>gi|70989777|ref|XP_749738.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
Af293]
gi|66847369|gb|EAL87700.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
Af293]
Length = 608
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 138 RDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDE------------- 184
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT ++ + +F
Sbjct: 185 -----------------------------------QEKTSKIFVGGVSQEATEQEFKEFF 209
Query: 123 SRFGRILD 130
++FGR++D
Sbjct: 210 TQFGRVID 217
>gi|353232562|emb|CCD79917.1| putative heterogeneous nuclear ribonucleoprotein [Schistosoma
mansoni]
Length = 315
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD + RG GFIT+ + V+ + HE+ G TV RA P+ED P M+
Sbjct: 50 KDGRTNRSRGFGFITYKEPEMVDAAQANRPHEIDGKTVEAKRAMPREDSNSPESHMT--- 106
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
K+FVG L ++ T E+LR Y
Sbjct: 107 ---------------------------------------VTKLFVGGLKKDVTHEELREY 127
Query: 122 FSRFGRILDVYV 133
FS++G I + V
Sbjct: 128 FSKYGNITECEV 139
>gi|398396946|ref|XP_003851931.1| hypothetical protein MYCGRDRAFT_28846, partial [Zymoseptoria
tritici IPO323]
gi|339471811|gb|EGP86907.1| hypothetical protein MYCGRDRAFT_28846 [Zymoseptoria tritici IPO323]
Length = 161
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D S RG GF+TF +V +MV H L G + RA P+++ R
Sbjct: 33 RDGQSGRSRGFGFLTFKDPKTVNTVMVKEHSLDGKLIDPKRAIPRDEQERTA-------- 84
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEAT +D + +F
Sbjct: 85 ----------------------------------------KIFVGGVSQEATEQDFKEFF 104
Query: 123 SRFGRILD 130
+FGR+LD
Sbjct: 105 MQFGRVLD 112
>gi|328711026|ref|XP_001943905.2| PREDICTED: hypothetical protein LOC100169433 [Acyrthosiphon pisum]
Length = 530
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF+ A++VE ++ V H L G + ATPK RP
Sbjct: 251 KDPITQRSRGFGFITFSDAETVEKVLAVPIHTLDGKKIDPKHATPKN---RPKA------ 301
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G+ T KKIFVG + Q+ TA++++ Y
Sbjct: 302 -----------------GSKT-------------------KKIFVGGVSQDTTADEVKAY 325
Query: 122 FSRFGRI 128
FS+FG++
Sbjct: 326 FSQFGKV 332
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 337 MLMDQHTKRHRGFGFVTFENDDIVDTICEIHFHTIKNKKVECKKAQPKE 385
>gi|159129147|gb|EDP54261.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
A1163]
Length = 608
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 138 RDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDE------------- 184
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT ++ + +F
Sbjct: 185 -----------------------------------QEKTSKIFVGGVSQEATEQEFKEFF 209
Query: 123 SRFGRILD 130
++FGR++D
Sbjct: 210 TQFGRVID 217
>gi|321476369|gb|EFX87330.1| hypothetical protein DAPPUDRAFT_97182 [Daphnia pulex]
Length = 266
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ TA+DLR YF +FG + DV++PK F
Sbjct: 194 KVFVGRCTEDITADDLRDYFCKFGEVTDVFIPKPF 228
>gi|226438196|pdb|3D2W|A Chain A, Crystal Structure Of Mouse Tdp-43 Rrm2 Domain In Complex
Wit
Length = 89
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 30/37 (81%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
G K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 47
>gi|350294627|gb|EGZ75712.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 324
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 32 RDGATGRSRGFGFLTFKDPKTVNIVMVKEHYLDGKIIDPKRAIPRDE------------- 78
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QE T + R YF
Sbjct: 79 -----------------------------------QEKTSKIFVGGVSQETTDHEFREYF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
++FGR++D + P+ F F + +C S
Sbjct: 104 AQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVEACLS 142
>gi|256080846|ref|XP_002576687.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
Length = 315
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD + RG GFIT+ + V+ + HE+ G TV RA P+ED P M+
Sbjct: 50 KDGRTNRSRGFGFITYKEPEMVDAAQANRPHEIDGKTVEAKRAMPREDSNSPESHMT--- 106
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
K+FVG L ++ T E+LR Y
Sbjct: 107 ---------------------------------------VTKLFVGGLKKDVTHEELREY 127
Query: 122 FSRFGRILDVYV 133
FS++G I + V
Sbjct: 128 FSKYGNITECEV 139
>gi|148225398|ref|NP_001080637.1| TAR DNA binding protein [Xenopus laevis]
gi|28278686|gb|AAH44271.1| Tardbp-prov protein [Xenopus laevis]
Length = 245
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 31/36 (86%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ +AE+LR++FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPF 226
>gi|426327841|ref|XP_004024718.1| PREDICTED: TAR DNA-binding protein 43 [Gorilla gorilla gorilla]
Length = 237
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 14 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 49
>gi|413954077|gb|AFW86726.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 401
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 48/144 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ ++ RG GF+TF+ ++ ++ D H + G TV V R PKE
Sbjct: 126 KDKHTRMPRGFGFVTFSDPSVLDRVLEDEHVIDGRTVEVKRTVPKE-------------- 171
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+S+ D P + KKIFVG +P T + L+ +F
Sbjct: 172 ------LSSK------------DGPKT------------KKIFVGGIPPSLTEDKLKEHF 201
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++ V + H GRS
Sbjct: 202 SSYGKV----VEHQIMLDHSTGRS 221
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE---DDFRPVGRMS 58
D + RG GF+TF S D+VE +M + H+LGG V + +A PK+ D GR S
Sbjct: 215 DHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKKPGAGDSSSNGRHS 274
Query: 59 HGG 61
GG
Sbjct: 275 RGG 277
>gi|255574661|ref|XP_002528240.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223532357|gb|EEF34155.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 456
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 31/131 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E ++++ H + G V +A P+ED
Sbjct: 39 KDRATGRARGFGFVVFADPAVAERVVMEKHLIDGRNVEAKKAVPREDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
N S++ + A T KKIFVG L T D ++YF
Sbjct: 87 NILNRNSSSSIHGSPSPART-------------------KKIFVGGLASTVTESDFKKYF 127
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 128 DQFGTITDVVV 138
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 141 DHNTQRPRGFGFITYDSEEAVDKVLHKTFHELNGKMVEVKRAVPKE 186
>gi|413926094|gb|AFW66026.1| heterogeneous nuclear ribonucleoprotein A3 [Zea mays]
Length = 443
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+ G +
Sbjct: 147 KDKHTKMPRGFGFVTFSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMITKDGPKT---- 202
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+KIF+G LP T ++L+ +F
Sbjct: 203 ---------------------------------------RKIFIGGLPPSLTEDELKDHF 223
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G + V + H GRS
Sbjct: 224 SSYGNV----VEHQIMLDHSTGRS 243
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE--DDFRPVGRMSH 59
D + RG GFITF S DSVE ++ + +LGG V + +A PK+ D GR +H
Sbjct: 237 DHSTGRSRGFGFITFESEDSVERVISEGRMRDLGGKQVEIKKAEPKKHGSDHSSNGRSNH 296
Query: 60 GGYGAY 65
GG GAY
Sbjct: 297 GG-GAY 301
>gi|357148248|ref|XP_003574688.1| PREDICTED: nuclear polyadenylated RNA-binding protein 4-like
[Brachypodium distachyon]
Length = 359
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 42/128 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG GFIT+A V+++M D+H + G V + R PK+
Sbjct: 55 KNKHTSQPRGFGFITYADPAVVDHVMEDSHVINGKQVEIKRTIPKD-------------- 100
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ +P F KKIFVG LP T +D + +F
Sbjct: 101 -------------------SMQSNPRDF---------KTKKIFVGGLPSTLTEDDFKDFF 132
Query: 123 SRFGRILD 130
++G ++D
Sbjct: 133 EKYGTVVD 140
>gi|348514638|ref|XP_003444847.1| PREDICTED: TAR DNA-binding protein 43-like [Oreochromis niloticus]
Length = 396
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+KIFVGR ++ T +DLR+YF ++G + DV++PK F
Sbjct: 192 RKIFVGRCTEDMTTDDLRQYFMQYGEVTDVFIPKPF 227
>gi|225438019|ref|XP_002274734.1| PREDICTED: uncharacterized protein LOC100263471 [Vitis vinifera]
Length = 441
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 40/137 (29%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF--RP----VGR 56
+D+ + RG GF+ FA ++ ++ + H + G TV RA +E+ RP GR
Sbjct: 39 RDKTTGRPRGFGFVVFADPSVLDAVLQEKHTIDGRTVEAKRALSREEQHTSRPGNSNTGR 98
Query: 57 MSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAE 116
S G G + KKIFVG LP T E
Sbjct: 99 SSSGMGGNFKT----------------------------------KKIFVGGLPSTLTEE 124
Query: 117 DLRRYFSRFGRILDVYV 133
R+YF +G + DV V
Sbjct: 125 GFRQYFETYGHVTDVVV 141
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFI+F + D+V+ ++ T H+L G V V RA PK+
Sbjct: 144 DQNTQRPRGFGFISFDTEDAVDRVLHKTFHDLNGKLVEVKRALPKD 189
>gi|294936223|ref|XP_002781665.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Perkinsus
marinus ATCC 50983]
gi|239892587|gb|EER13460.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Perkinsus
marinus ATCC 50983]
Length = 482
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 11 RGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GF+TF + + + + H + G +V V R+ +D G GA
Sbjct: 212 RGFGFVTFETKEQMLGCVAAAPHVIMGKSVEVRRSI-NDDGTSTAHERRSAGKGA----- 265
Query: 70 SAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL 129
GAP YD GS G+G + K+FVG LP+E T+E LR +F ++G ++
Sbjct: 266 ---------GAPRNYDDYGS--GKGGHRDQNPNKLFVGGLPREITSEALRDFFIQYGNLV 314
Query: 130 DVYV--------PKRFWFCHLCGRSCSRSCFSKVSRNLWTAGCNRFSHTT 171
D V + F + S + + S + N+ HTT
Sbjct: 315 DCTVITDRMTGQSRGFGYVTYEDSSAAEAAISNSANNIIDGKWVDVKHTT 364
>gi|224079936|ref|XP_002186638.1| PREDICTED: TAR DNA-binding protein 43 [Taeniopygia guttata]
Length = 414
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 31/36 (86%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F+++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFAQYGEVVDVFIPKPF 226
>gi|336263120|ref|XP_003346341.1| hypothetical protein SMAC_07818 [Sordaria macrospora k-hell]
gi|380091669|emb|CCC10801.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 532
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 32 RDGATGRSRGFGFLTFKDPKTVNVVMVKEHYLDGKIIDPKRAIPRDE------------- 78
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QE T + R YF
Sbjct: 79 -----------------------------------QEKTSKIFVGGVSQETTDHEFREYF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
++FGR++D + P+ F F + +C S
Sbjct: 104 AQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVDACLS 142
>gi|410899382|ref|XP_003963176.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Takifugu
rubripes]
Length = 294
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+LR+YF ++G + DV++PK F
Sbjct: 188 RKVFVGRCTEDMTAEELRQYFMQYGEVTDVFIPKPF 223
>gi|392344877|ref|XP_003749100.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
Length = 404
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|68074213|ref|XP_679021.1| nucleic acid binding factor [Plasmodium berghei strain ANKA]
gi|56499660|emb|CAH99922.1| nucleic acid binding factor, putative [Plasmodium berghei]
Length = 491
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+IFV RLP E +DL +YFS++G+I+D+Y+ K
Sbjct: 107 RIFVTRLPFEVNKKDLEKYFSKYGKIIDIYISKNL 141
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
K+FV +L T E LR YF +G I+D+Y+P
Sbjct: 404 KLFVTKLNSVTTIETLRNYFESYGEIIDIYMP 435
>gi|242765445|ref|XP_002340976.1| heterogeneous nuclear ribonucleoprotein HRP1 [Talaromyces
stipitatus ATCC 10500]
gi|218724172|gb|EED23589.1| heterogeneous nuclear ribonucleoprotein HRP1 [Talaromyces
stipitatus ATCC 10500]
Length = 544
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 145 RDSATGRSRGFGFLTFRDPKTVNTVMVKEHYLDGKIIDPKRAIPRDE------------- 191
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT +D +++F
Sbjct: 192 -----------------------------------QEKTSKIFVGGVSQEATEQDFKQFF 216
Query: 123 SRFGRILD 130
+FGR++D
Sbjct: 217 MQFGRVVD 224
>gi|426220118|ref|XP_004004264.1| PREDICTED: TAR DNA-binding protein 43-like [Ovis aries]
Length = 283
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 60 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 95
>gi|449688875|ref|XP_002157235.2| PREDICTED: TAR DNA-binding protein 43-like, partial [Hydra
magnipapillata]
Length = 271
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+F+GRLP + + +DLR+YFS +G + DVY+P F
Sbjct: 112 KLFIGRLPADTSEDDLRKYFSDYGELTDVYLPTPF 146
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK 47
RG GF+T+A AD + ++ +H L GS + V A PK
Sbjct: 147 RGFGFVTYAQADDAQIVLHKSHSLKGSRMNVTIAEPK 183
>gi|225563097|gb|EEH11376.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
capsulatus G186AR]
Length = 410
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 56/151 (37%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+TF +V +MV H L G + RA P+++
Sbjct: 195 RGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDE--------------------- 233
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
Q KIFVG + QEAT +D +++F +FGR++D
Sbjct: 234 ---------------------------QERTSKIFVGGVSQEATEQDFKQFFMQFGRVVD 266
Query: 131 VYV--------PKRFWFCHLCGRSCSRSCFS 153
+ P+ F F + + S
Sbjct: 267 ATLMIDKDSGRPRGFGFVTFDSEAAVEATLS 297
>gi|312378143|gb|EFR24795.1| hypothetical protein AND_10386 [Anopheles darlingi]
Length = 486
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +SV+ L V H L G + ATPK
Sbjct: 144 KDPVTQRSRGFGFITFQEPNSVDKVLQVPIHTLDGKKIDPKHATPKN------------- 190
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
R ++ KKIFVG + Q+ +AE+++ Y
Sbjct: 191 -------------------------------RPKTQSNKTKKIFVGGVSQDTSAEEVKAY 219
Query: 122 FSRFGRILDVYV 133
FS+FG++ + +
Sbjct: 220 FSQFGKVEETVM 231
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 231 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 279
>gi|452822947|gb|EME29962.1| heterogeneous nuclear ribonucleoprotein A1/A3 [Galdieria
sulphuraria]
Length = 368
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 41/131 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+TF +S + HEL G V +A PK +
Sbjct: 83 RDKHTGHPRGFGFVTFEKEESADRAATKRHELDGRQVEAKKAVPKAE------------- 129
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
YI+ + + PT +KIFVG LP T ED YF
Sbjct: 130 -----YITRSQ----VTKPT-------------------RKIFVGGLPLSCTEEDFMEYF 161
Query: 123 SRFGRILDVYV 133
R G +++ ++
Sbjct: 162 ERLGHVVEAHI 172
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D + RG GF+TF+S D VE + + HE+ G V V +A PK F RM G
Sbjct: 175 DHQTGISRGFGFVTFSSEDMVEKVFEQSQHEIKGKIVEVKKAEPKH--FSEGRRMKDLGG 232
Query: 63 GAYNAY 68
+Y Y
Sbjct: 233 NSYERY 238
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
+Q KIFVG L E T E L++YF +GR+LD +
Sbjct: 45 NQNNNSKIFVGGLSWETTEETLQKYFESYGRVLDCVI 81
>gi|148905890|gb|ABR16107.1| unknown [Picea sitchensis]
gi|224285605|gb|ACN40521.1| unknown [Picea sitchensis]
gi|224285970|gb|ACN40697.1| unknown [Picea sitchensis]
Length = 371
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 48/144 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+T+A V+ ++ D H + G V + R P+ +
Sbjct: 84 KDRATGNPRGFGFVTYADPSVVDKVIKDKHFIDGKMVEIKRTIPRGN------------- 130
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
AA P KKIFVG +P T ++ + YF
Sbjct: 131 -------------AATKGPKT------------------KKIFVGGIPTSITEDEFKDYF 159
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S+FG++L+ + H GRS
Sbjct: 160 SKFGKVLE----HQIMQDHGTGRS 179
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATPKE 48
+D G+ RG GF+TF S ++VE ++ ELGG V + +A PK+
Sbjct: 172 QDHGTGRSRGFGFVTFDSEEAVEEILSHGKMCELGGKQVEIKKAEPKK 219
>gi|153792009|ref|NP_001093319.1| heterogeneous nuclear ribonucleoprotein A1 [Bombyx mori]
gi|95102934|gb|ABF51408.1| heterogeneous nuclear ribonucleoprotein A1 [Bombyx mori]
Length = 316
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K +G GFIT++ A V+ + H++ G V RA P+E+ RP
Sbjct: 50 KDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRP-------- 101
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
E+S + KK+FV L Q+ EDLR Y
Sbjct: 102 ---------------------------------EASATV-KKLFVAGLKQDIEEEDLREY 127
Query: 122 FSRFGRILDVYV 133
FS FG I+ V V
Sbjct: 128 FSTFGNIVSVSV 139
>gi|258597221|ref|XP_001347758.2| nucleic acid binding protein, putative [Plasmodium falciparum 3D7]
gi|254832603|gb|AAN35671.2| nucleic acid binding protein, putative [Plasmodium falciparum 3D7]
Length = 588
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IF RLP EA+ +DL +YFS+FG+I+D+YV +
Sbjct: 227 RIFATRLPFEASKKDLEKYFSKFGKIVDIYVSR 259
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
G+ + G K+FV +L T E LR YF +FG I+D+Y+P
Sbjct: 494 GDEWNKRGYKLFVTKLNSATTIEKLRNYFEKFGEIIDIYMP 534
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHE---LGGSTVVVDRATPK 47
MP D + RGI F+TF +SV+N++ D H + G VV+D A P+
Sbjct: 533 MPNDVYTNRPRGIAFVTFLDNESVKNILSDEHSKHIIDGKEVVLDLADPE 582
>gi|294877868|ref|XP_002768167.1| Nucleolysin TIAR, putative [Perkinsus marinus ATCC 50983]
gi|239870364|gb|EER00885.1| Nucleolysin TIAR, putative [Perkinsus marinus ATCC 50983]
Length = 474
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 11 RGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GF+TF + + + + H + G TV V R+ ++ G N
Sbjct: 198 RGFGFVTFETKEQMLGCVAAAPHVIMGKTVEVRRS------------INDDGTSTANERR 245
Query: 70 SAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL 129
SA GAP YD S G+G + K+FVG LP+E T++ LR +F ++G ++
Sbjct: 246 SAGK---GSGAPRSYDDYSSGKGKGGHRDQNPNKLFVGGLPREVTSDVLRDFFIQYGNLV 302
Query: 130 DVYV 133
D V
Sbjct: 303 DCTV 306
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 80 APTLYDHPGSFYGRGESSQRIG---KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
AP + +P R + R G KK+FVG LP+EA L YFS+FG + D V
Sbjct: 132 APPMGHNPAPVAPRYDGPPRRGDDTKKVFVGGLPREADKPALDEYFSQFGPVEDSVV--- 188
Query: 137 FWFCHLCGRS 146
GRS
Sbjct: 189 -MMDRFTGRS 197
>gi|29841163|gb|AAP06176.1| SJCHGC06206 protein [Schistosoma japonicum]
gi|226473310|emb|CAX71341.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|226473312|emb|CAX71342.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|226473314|emb|CAX71343.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|226473318|emb|CAX71345.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
Length = 313
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD + RG GFIT+ + V+ + HE+ G TV RA P+ED P M+
Sbjct: 50 KDGRTNRSRGFGFITYKEPEMVDAAQANRPHEIDGKTVEAKRAMPREDSNSPESHMT--- 106
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
K+FVG L ++ T E+LR Y
Sbjct: 107 ---------------------------------------VTKLFVGGLKKDVTHEELREY 127
Query: 122 FSRFGRILDVYV 133
FS++G I + V
Sbjct: 128 FSKYGNITECEV 139
>gi|226484798|emb|CAX74308.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
gi|226484800|emb|CAX74309.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
Length = 344
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+FVG + + TA+ LR +FS+FGR++DV++PK F
Sbjct: 189 QEVSRKVFVGGITEFITADLLRDHFSQFGRVIDVFIPKPF 228
>gi|413954078|gb|AFW86727.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 278
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 48/144 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ ++ RG GF+TF+ ++ ++ D H + G TV V R PKE
Sbjct: 126 KDKHTRMPRGFGFVTFSDPSVLDRVLEDEHVIDGRTVEVKRTVPKE-------------- 171
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+S+ D P + KKIFVG +P T + L+ +F
Sbjct: 172 ------LSSK------------DGPKT------------KKIFVGGIPPSLTEDKLKEHF 201
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++ V + H GRS
Sbjct: 202 SSYGKV----VEHQIMLDHSTGRS 221
>gi|357631285|gb|EHJ78874.1| TAR DNA binding protein-like protein [Danaus plexippus]
Length = 305
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR + TA+DLR YF FG++ DV+VPK F
Sbjct: 176 RKVFVGRCTESLTADDLREYFGAFGQVTDVFVPKPF 211
>gi|194381506|dbj|BAG58707.1| unnamed protein product [Homo sapiens]
Length = 298
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 75 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 110
>gi|347966951|ref|XP_321067.5| AGAP001993-PA [Anopheles gambiae str. PEST]
gi|333469826|gb|EAA01260.6| AGAP001993-PA [Anopheles gambiae str. PEST]
Length = 556
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 45/127 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +SV+ L V H L G + ATPK
Sbjct: 215 KDPVTQRSRGFGFITFQEPNSVDKVLQVPIHTLDGKKIDPKHATPKN------------- 261
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
R ++ KKIFVG + Q+ +AE+++ Y
Sbjct: 262 -------------------------------RPKTQSNKTKKIFVGGVSQDTSAEEVKAY 290
Query: 122 FSRFGRI 128
FS+FG++
Sbjct: 291 FSQFGKV 297
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 302 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 350
>gi|89257430|gb|ABD64922.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing
protein [Brassica oleracea]
Length = 426
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA E +++ H + G V +A P+ DD + R S
Sbjct: 38 KDRATGRARGFGFLVFADPTVAERVVLIRHVIDGKIVEAKKAVPR-DDHVVLNRSSS--- 93
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+L PG KKIFVG L T + ++YF
Sbjct: 94 -------------------SLQGSPGP---------ATSKKIFVGGLASSVTEAEFKKYF 125
Query: 123 SRFGRILDVYV 133
++FG I DV V
Sbjct: 126 AQFGTITDVVV 136
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPV 54
D ++ RG GFI+F S ++V+ ++ T HEL G V V A PKE P+
Sbjct: 139 DHRTQRPRGFGFISFESEEAVDRVLQRTFHELNGKMVEVKLAVPKEMALNPI 190
>gi|215712318|dbj|BAG94445.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 382
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 52/132 (39%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKE----DDFRPVGRMS 58
+D+ + RG GFIT+++ V+ +M D HE G V + R PK+ DF+
Sbjct: 2 RDKHTSQPRGFGFITYSNPAVVDRVMDDIHEFNGKQVEIKRTIPKDSVQSKDFK------ 55
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDL 118
KKIFVG LPQ T +D
Sbjct: 56 ------------------------------------------TKKIFVGGLPQALTEDDF 73
Query: 119 RRYFSRFGRILD 130
+ +F ++G ++D
Sbjct: 74 KHFFQKYGPVVD 85
>gi|221055866|ref|XP_002259071.1| nucleic acid binding factor [Plasmodium knowlesi strain H]
gi|193809142|emb|CAQ39844.1| nucleic acid binding factor, putative [Plasmodium knowlesi strain
H]
Length = 760
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IFV RLP EA +DL +YFS++G+I+D+YV K
Sbjct: 372 RIFVTRLPFEAGKKDLEKYFSKYGKIVDIYVSK 404
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 75 YAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
Y + G P + PG G+ + G K+FV +L T E LR YF FG I+D+Y+P
Sbjct: 648 YRSPGQPFVRKLPG-----GDEWNKRGYKLFVTKLNSVTTIETLRNYFEAFGEIIDIYMP 702
>gi|159164258|pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In Rna-Binding
Protein 30
Length = 90
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 10 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 62
>gi|30682550|ref|NP_851001.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17065240|gb|AAL32774.1| Unknown protein [Arabidopsis thaliana]
gi|20260060|gb|AAM13377.1| unknown protein [Arabidopsis thaliana]
gi|332641793|gb|AEE75314.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 42/128 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFITFA V+ ++ DTH + G V + R PK
Sbjct: 52 RDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPK--------------- 96
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
GA G +S KKIFVG +P T ++L+ +F
Sbjct: 97 GA---------------------------GGNQSKDIKTKKIFVGGIPSTVTEDELKDFF 129
Query: 123 SRFGRILD 130
+++G +++
Sbjct: 130 AKYGNVVE 137
>gi|30682553|ref|NP_683559.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|11994764|dbj|BAB03120.1| unnamed protein product [Arabidopsis thaliana]
gi|19347908|gb|AAL85976.1| unknown protein [Arabidopsis thaliana]
gi|21689785|gb|AAM67536.1| unknown protein [Arabidopsis thaliana]
gi|62320244|dbj|BAD94504.1| hypothetical protein [Arabidopsis thaliana]
gi|332641794|gb|AEE75315.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 358
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 42/131 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFITFA V+ ++ DTH + G V + R PK
Sbjct: 52 RDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPK--------------- 96
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
GA G +S KKIFVG +P T ++L+ +F
Sbjct: 97 GA---------------------------GGNQSKDIKTKKIFVGGIPSTVTEDELKDFF 129
Query: 123 SRFGRILDVYV 133
+++G +++ V
Sbjct: 130 AKYGNVVEHQV 140
>gi|260793328|ref|XP_002591664.1| hypothetical protein BRAFLDRAFT_223392 [Branchiostoma floridae]
gi|229276873|gb|EEN47675.1| hypothetical protein BRAFLDRAFT_223392 [Branchiostoma floridae]
Length = 165
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+++F+GR ++ +AEDLR YF RFG + DV +PK F
Sbjct: 90 RRVFIGRCTEDISAEDLRAYFQRFGEVTDVVIPKPF 125
>gi|19111886|ref|NP_595094.1| mRNA cleavage factor complex subunit (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74676196|sp|O94432.1|YHKF_SCHPO RecName: Full=Uncharacterized RNA-binding protein C660.15
gi|4049514|emb|CAA22535.1| mRNA cleavage factor complex subunit (predicted)
[Schizosaccharomyces pombe]
Length = 474
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 56/152 (36%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+TF + V +M H L G + RA P+E+
Sbjct: 204 RGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREE--------------------- 242
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
Q K+FVG +P + T E+ R +F++FGR+LD
Sbjct: 243 ---------------------------QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLD 275
Query: 131 VYV--------PKRFWFCHLCGRSCSRSCFSK 154
+ P+ F F S + S+
Sbjct: 276 ATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSH 59
M KD G RG GF+T+ + +VE M + + G V V RATPK R H
Sbjct: 280 MDKDTGRP--RGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQH 337
Query: 60 GGYGAYNAY 68
G +G N Y
Sbjct: 338 GYHGNANPY 346
>gi|115475858|ref|NP_001061525.1| Os08g0320100 [Oryza sativa Japonica Group]
gi|35215091|dbj|BAC92448.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|42409159|dbj|BAD10426.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113623494|dbj|BAF23439.1| Os08g0320100 [Oryza sativa Japonica Group]
gi|215768436|dbj|BAH00665.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218200931|gb|EEC83358.1| hypothetical protein OsI_28764 [Oryza sativa Indica Group]
gi|258644640|dbj|BAI39889.1| ribonucleoprotein-like [Oryza sativa Indica Group]
Length = 350
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ ++ RG GFITFA V+ ++ D H + G V + R PK
Sbjct: 48 KDRFTQKPRGFGFITFADPAVVDRVIEDNHVINGKEVEIKRTIPK--------------- 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
GA L D KKIFVG LP ++ + +F
Sbjct: 93 ----------------GAAPLKDF-------------KTKKIFVGGLPSALKEDEFKEFF 123
Query: 123 SRFGRILD 130
S+FG++++
Sbjct: 124 SKFGKVVE 131
>gi|389583621|dbj|GAB66355.1| nucleic acid binding factor [Plasmodium cynomolgi strain B]
Length = 667
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IFV RLP EA +DL +YFS++G+I+D+YV K
Sbjct: 279 RIFVTRLPFEAGKKDLEKYFSKYGKIVDIYVSK 311
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 65 YNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSR 124
Y + + Y + G P + PG G+ + G K+FV +L T E LR YF
Sbjct: 545 YPPNVVPSGSYRSPGQPFVRKLPG-----GDEWNKRGYKLFVTKLNSVTTIETLRNYFEA 599
Query: 125 FGRILDVYVP 134
FG I+D+Y+P
Sbjct: 600 FGEIIDIYMP 609
>gi|215712317|dbj|BAG94444.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 436
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFIT+++ V+ +M D HE G V + R PK+
Sbjct: 56 RDKHTSQPRGFGFITYSNPAVVDRVMDDIHEFNGKQVEIKRTIPKDS------------- 102
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+S KKIFVG LPQ T +D + +F
Sbjct: 103 -------------------------------VQSKDFKTKKIFVGGLPQALTEDDFKHFF 131
Query: 123 SRFGRILD 130
++G ++D
Sbjct: 132 QKYGPVVD 139
>gi|194388816|dbj|BAG61425.1| unnamed protein product [Homo sapiens]
Length = 330
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 107 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 142
>gi|414868392|tpg|DAA46949.1| TPA: hypothetical protein ZEAMMB73_935024 [Zea mays]
Length = 348
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ ++ RG GFITFA V+ ++ D H + G V + R PK
Sbjct: 47 KDRYTQKPRGFGFITFADPTVVDRVIEDEHVINGKPVEIKRTIPK--------------- 91
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
GA L D KKIFVG LP ++ + +F
Sbjct: 92 ----------------GAAPLKDFK-------------TKKIFVGGLPSALKEDEFKEFF 122
Query: 123 SRFGRILD 130
S+FG++++
Sbjct: 123 SKFGKVVE 130
>gi|345794484|ref|XP_535409.3| PREDICTED: TAR DNA-binding protein 43 [Canis lupus familiaris]
gi|395521863|ref|XP_003765034.1| PREDICTED: TAR DNA-binding protein 43 [Sarcophilus harrisii]
Length = 414
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|164448723|ref|NP_001039950.2| TAR DNA-binding protein 43 [Bos taurus]
gi|296479176|tpg|DAA21291.1| TPA: TAR DNA binding protein [Bos taurus]
gi|440901447|gb|ELR52388.1| TAR DNA-binding protein 43 [Bos grunniens mutus]
Length = 414
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|345327668|ref|XP_001515396.2| PREDICTED: TAR DNA-binding protein 43 isoform 2 [Ornithorhynchus
anatinus]
Length = 414
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|338722162|ref|XP_001492915.3| PREDICTED: TAR DNA-binding protein 43 [Equus caballus]
gi|349602995|gb|AEP98963.1| TAR DNA-binding protein 43-like protein [Equus caballus]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|328849877|gb|EGF99050.1| hypothetical protein MELLADRAFT_79554 [Melampsora larici-populina
98AG31]
Length = 259
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCH 141
G+++++GR+PQEAT D+ +YF R+G +LDV + F F
Sbjct: 5 GRRLYIGRIPQEATRTDIEKYFGRYGTLLDVRIMAGFGFLE 45
>gi|289741549|gb|ADD19522.1| RNA-binding protein musashi [Glossina morsitans morsitans]
Length = 531
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ A+DL+ YFS+FG + DV++PK F
Sbjct: 193 KVFVGRCTEDMNADDLKDYFSKFGEVTDVFIPKPF 227
>gi|281349254|gb|EFB24838.1| hypothetical protein PANDA_011802 [Ailuropoda melanoleuca]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|392863540|gb|EJB10655.1| musashi 1, variant [Coccidioides immitis RS]
Length = 608
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 56/160 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++ R
Sbjct: 145 RDGATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDEQERT--------- 195
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + Q+A +D +++F
Sbjct: 196 ---------------------------------------SKIFVGGVSQDANEQDFKKFF 216
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
+FGR++D + P+ F F + +C S+
Sbjct: 217 MQFGRVVDATLMIDKDTGRPRGFGFVTFDSEAAVEACLSQ 256
>gi|426239738|ref|XP_004013776.1| PREDICTED: TAR DNA-binding protein 43 [Ovis aries]
Length = 415
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|367038869|ref|XP_003649815.1| hypothetical protein THITE_2108809 [Thielavia terrestris NRRL 8126]
gi|346997076|gb|AEO63479.1| hypothetical protein THITE_2108809 [Thielavia terrestris NRRL 8126]
Length = 606
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 56/151 (37%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+TF +V +MV H L G + RA P+++
Sbjct: 163 RGFGFLTFKDPKTVNIVMVKEHYLDGKIIDPKRAIPRDE--------------------- 201
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
Q KIFVG + QE T + R YF++FGR++D
Sbjct: 202 ---------------------------QEKTSKIFVGGVSQETTDHEFREYFAQFGRVVD 234
Query: 131 VYV--------PKRFWFCHLCGRSCSRSCFS 153
+ P+ F F + +C +
Sbjct: 235 ATLMMDKDTGRPRGFGFVTFESEAGVEACLA 265
>gi|344283523|ref|XP_003413521.1| PREDICTED: TAR DNA-binding protein 43 [Loxodonta africana]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|293336929|ref|NP_001168878.1| uncharacterized protein LOC100382683 [Zea mays]
gi|223973459|gb|ACN30917.1| unknown [Zea mays]
gi|414871120|tpg|DAA49677.1| TPA: hypothetical protein ZEAMMB73_860016 [Zea mays]
Length = 443
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 31/165 (18%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA V+ + D H L G TV V RA +E+
Sbjct: 39 RDKTTGRPRGFGFVVFADPAVVDRALQDPHTLDGRTVDVKRALSREE------------- 85
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A++ A P+ + G G G+++ KKIFVG LP T + R+YF
Sbjct: 86 -------QQASKAAN---PSGGRNTGGGNGGGDANGARTKKIFVGGLPSTLTEDGFRQYF 135
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSKVSRNL 159
FG + DV V P+ F F K +L
Sbjct: 136 QTFGIVTDVVVMYDQNTQRPRGFGFITFDSEDAVDHVLQKTFHDL 180
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFITF S D+V++++ T H+LGG V V RA P+E
Sbjct: 149 DQNTQRPRGFGFITFDSEDAVDHVLQKTFHDLGGKLVEVKRALPRE 194
>gi|432098123|gb|ELK28010.1| TAR DNA-binding protein 43 [Myotis davidii]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|154281459|ref|XP_001541542.1| hypothetical protein HCAG_03640 [Ajellomyces capsulatus NAm1]
gi|150411721|gb|EDN07109.1| hypothetical protein HCAG_03640 [Ajellomyces capsulatus NAm1]
Length = 157
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 48/131 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D S RG GF+TF +V +MV H L G + RA P+++
Sbjct: 57 RDGASGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDE------------- 103
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT +D +++F
Sbjct: 104 -----------------------------------QERTSKIFVGGVSQEATEQDFKQFF 128
Query: 123 SRFGRILDVYV 133
+FGR++D +
Sbjct: 129 MQFGRVVDATL 139
>gi|348571399|ref|XP_003471483.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Cavia
porcellus]
Length = 304
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR + TA++LR++FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTDDMTADELRQFFSQYGEVVDVFIPKPF 226
>gi|328704450|ref|XP_001951795.2| PREDICTED: TAR DNA-binding protein 43-like [Acyrthosiphon pisum]
Length = 409
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
KKIFVG+L + T EDL YF +FG I++V+VP+ F
Sbjct: 201 KKIFVGQLTESITQEDLEDYFKKFGDIVEVFVPRPF 236
>gi|156098334|ref|XP_001615199.1| nucleic acid binding factor [Plasmodium vivax Sal-1]
gi|148804073|gb|EDL45472.1| nucleic acid binding factor, putative [Plasmodium vivax]
Length = 753
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IFV RLP EA +DL +YFS++G+I+D+YV K
Sbjct: 364 RIFVTRLPFEAGKKDLEKYFSKYGKIVDIYVSK 396
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 65 YNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSR 124
Y ++ + Y G P + PG G+ + G K+FV +L T E LR YF
Sbjct: 631 YPPNVAPSGSYRPPGQPFVRKLPG-----GDEWNKRGYKLFVTKLNSVTTIETLRNYFEA 685
Query: 125 FGRILDVYVP 134
FG I+D+Y+P
Sbjct: 686 FGEIIDIYMP 695
>gi|226473316|emb|CAX71344.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
Length = 236
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD + RG GFIT+ + V+ + HE+ G TV RA P+ED P M+
Sbjct: 50 KDGRTNRSRGFGFITYKEPEMVDAAQANRPHEIDGKTVEAKRAMPREDSNSPESHMT--- 106
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
K+FVG L ++ T E+LR Y
Sbjct: 107 ---------------------------------------VTKLFVGGLKKDVTHEELREY 127
Query: 122 FSRFGRILDVYV 133
FS++G I + V
Sbjct: 128 FSKYGNITECEV 139
>gi|119592075|gb|EAW71669.1| TAR DNA binding protein, isoform CRA_a [Homo sapiens]
Length = 367
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 144 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 179
>gi|297744195|emb|CBI37165.3| unnamed protein product [Vitis vinifera]
Length = 234
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 40/137 (29%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF--RP----VGR 56
+D+ + RG GF+ FA ++ ++ + H + G TV RA +E+ RP GR
Sbjct: 39 RDKTTGRPRGFGFVVFADPSVLDAVLQEKHTIDGRTVEAKRALSREEQHTSRPGNSNTGR 98
Query: 57 MSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAE 116
S G G + KKIFVG LP T E
Sbjct: 99 SSSGMGGNFKT----------------------------------KKIFVGGLPSTLTEE 124
Query: 117 DLRRYFSRFGRILDVYV 133
R+YF +G + DV V
Sbjct: 125 GFRQYFETYGHVTDVVV 141
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFI+F + D+V+ ++ T H+L G V V RA PK+
Sbjct: 144 DQNTQRPRGFGFISFDTEDAVDRVLHKTFHDLNGKLVEVKRALPKD 189
>gi|222623166|gb|EEE57298.1| hypothetical protein OsJ_07373 [Oryza sativa Japonica Group]
Length = 459
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ ++ RG GFITFA V+ ++ D H + G V + R PK
Sbjct: 48 KDRFTQKPRGFGFITFADPAVVDRVIEDNHVINGKEVEIKRTIPK--------------- 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
GA L D KKIFVG LP ++ + +F
Sbjct: 93 ----------------GAAPLKDF-------------KTKKIFVGGLPSALKEDEFKEFF 123
Query: 123 SRFGRILD 130
S+FG++++
Sbjct: 124 SKFGKVVE 131
>gi|444728185|gb|ELW68649.1| TAR DNA-binding protein 43 [Tupaia chinensis]
Length = 468
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 245 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 280
>gi|367025853|ref|XP_003662211.1| hypothetical protein MYCTH_2302558 [Myceliophthora thermophila ATCC
42464]
gi|347009479|gb|AEO56966.1| hypothetical protein MYCTH_2302558 [Myceliophthora thermophila ATCC
42464]
Length = 501
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 56/159 (35%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 32 RDGATGRSRGFGFLTFKDPKTVNIVMVKEHYLDGKIIDPKRAIPRDE------------- 78
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QE T + R YF
Sbjct: 79 -----------------------------------QEKTSKIFVGGVSQETTDHEFREYF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
++FGR++D + P+ F F + +C +
Sbjct: 104 AQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVEACLA 142
>gi|74223342|dbj|BAE21557.1| unnamed protein product [Mus musculus]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|330939341|ref|XP_003305832.1| hypothetical protein PTT_18782 [Pyrenophora teres f. teres 0-1]
gi|311316974|gb|EFQ86065.1| hypothetical protein PTT_18782 [Pyrenophora teres f. teres 0-1]
Length = 562
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF V +MV H L G + RA P+E+ R
Sbjct: 138 RDSATGRSRGFGFLTFKDPKCVNIVMVKEHYLDGKIIDPKRAIPREEQERT--------- 188
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEAT ED +F
Sbjct: 189 ---------------------------------------SKIFVGGVSQEATEEDFTNFF 209
Query: 123 SRFGRILD 130
+FGR++D
Sbjct: 210 KQFGRVVD 217
>gi|348571401|ref|XP_003471484.1| PREDICTED: TAR DNA-binding protein 43-like isoform 3 [Cavia
porcellus]
Length = 295
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR + TA++LR++FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTDDMTADELRQFFSQYGEVVDVFIPKPF 226
>gi|110738919|dbj|BAF01381.1| hypothetical protein [Arabidopsis thaliana]
Length = 205
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 42/130 (32%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+ +D+ + RG GFITFA V+ ++ DTH + G V + R PK
Sbjct: 50 IMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPK------------- 96
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
GA G +S KKIFVG +P T ++L+
Sbjct: 97 --GA---------------------------GGNQSKDIKTKKIFVGGIPSTVTEDELKD 127
Query: 121 YFSRFGRILD 130
+F+++G +++
Sbjct: 128 FFAKYGNVVE 137
>gi|47228815|emb|CAG07547.1| unnamed protein product [Tetraodon nigroviridis]
Length = 362
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR+YF ++G + DV++PK F
Sbjct: 204 RKVFVGRCTEDMTADELRQYFMQYGEVTDVFIPKPF 239
>gi|451850144|gb|EMD63446.1| hypothetical protein COCSADRAFT_160854 [Cochliobolus sativus
ND90Pr]
Length = 569
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF V +MV H L G + RA P+E+ R
Sbjct: 140 RDSATGRSRGFGFLTFKDPKCVNIVMVKEHYLDGKIIDPKRAIPREEQERT--------- 190
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEAT ED +F
Sbjct: 191 ---------------------------------------SKIFVGGVSQEATEEDFTNFF 211
Query: 123 SRFGRILD 130
+FGR++D
Sbjct: 212 KQFGRVVD 219
>gi|195122786|ref|XP_002005892.1| GI20724 [Drosophila mojavensis]
gi|193910960|gb|EDW09827.1| GI20724 [Drosophila mojavensis]
Length = 536
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|194752716|ref|XP_001958665.1| GF12452 [Drosophila ananassae]
gi|190619963|gb|EDV35487.1| GF12452 [Drosophila ananassae]
Length = 529
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|130750552|gb|ABO32290.1| TDP43 [Homo sapiens]
Length = 416
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|195347229|ref|XP_002040156.1| GM15502 [Drosophila sechellia]
gi|195586189|ref|XP_002082860.1| GD25005 [Drosophila simulans]
gi|194135505|gb|EDW57021.1| GM15502 [Drosophila sechellia]
gi|194194869|gb|EDX08445.1| GD25005 [Drosophila simulans]
Length = 531
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|194885691|ref|XP_001976478.1| GG19989 [Drosophila erecta]
gi|190659665|gb|EDV56878.1| GG19989 [Drosophila erecta]
Length = 533
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|17137616|ref|NP_477400.1| TAR DNA-binding protein-43 homolog, isoform B [Drosophila
melanogaster]
gi|19549788|ref|NP_599145.1| TAR DNA-binding protein-43 homolog, isoform C [Drosophila
melanogaster]
gi|24762415|ref|NP_726373.1| TAR DNA-binding protein-43 homolog, isoform D [Drosophila
melanogaster]
gi|281364145|ref|NP_001163280.1| TAR DNA-binding protein-43 homolog, isoform E [Drosophila
melanogaster]
gi|281364147|ref|NP_001163281.1| TAR DNA-binding protein-43 homolog, isoform F [Drosophila
melanogaster]
gi|19528241|gb|AAL90235.1| GH09868p [Drosophila melanogaster]
gi|21626670|gb|AAF47079.2| TAR DNA-binding protein-43 homolog, isoform B [Drosophila
melanogaster]
gi|21626671|gb|AAF47078.2| TAR DNA-binding protein-43 homolog, isoform C [Drosophila
melanogaster]
gi|21626672|gb|AAM68274.1| TAR DNA-binding protein-43 homolog, isoform D [Drosophila
melanogaster]
gi|63108407|gb|AAY33499.1| RH39704p [Drosophila melanogaster]
gi|220946666|gb|ACL85876.1| TBPH-PB [synthetic construct]
gi|220956308|gb|ACL90697.1| TBPH-PB [synthetic construct]
gi|272432674|gb|ACZ94552.1| TAR DNA-binding protein-43 homolog, isoform E [Drosophila
melanogaster]
gi|272432675|gb|ACZ94553.1| TAR DNA-binding protein-43 homolog, isoform F [Drosophila
melanogaster]
Length = 531
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|3882096|dbj|BAA34421.1| TAR-binding protein [Drosophila melanogaster]
gi|3882126|dbj|BAA34428.1| TAR-binding protein [Drosophila melanogaster]
gi|3882128|dbj|BAA34429.1| TAR-binding protein [Drosophila melanogaster]
Length = 531
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|355763816|gb|EHH62216.1| hypothetical protein EGM_20453 [Macaca fascicularis]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|261194978|ref|XP_002623893.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
dermatitidis SLH14081]
gi|239587765|gb|EEQ70408.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
dermatitidis SLH14081]
gi|239610740|gb|EEQ87727.1| heterogeneous nuclear ribonucleoprotein HRP1 [Ajellomyces
dermatitidis ER-3]
gi|327348818|gb|EGE77675.1| hypothetical protein BDDG_00612 [Ajellomyces dermatitidis ATCC
18188]
Length = 530
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++ R
Sbjct: 32 RDGATGRSRGFGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDEQERT--------- 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEAT +D +++F
Sbjct: 83 ---------------------------------------SKIFVGGVSQEATEQDFKQFF 103
Query: 123 SRFGRILD 130
+FGR++D
Sbjct: 104 MQFGRVVD 111
>gi|195489341|ref|XP_002092695.1| GE11522 [Drosophila yakuba]
gi|194178796|gb|EDW92407.1| GE11522 [Drosophila yakuba]
Length = 534
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|195431559|ref|XP_002063804.1| GK15864 [Drosophila willistoni]
gi|194159889|gb|EDW74790.1| GK15864 [Drosophila willistoni]
Length = 556
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|108996989|ref|XP_001102660.1| PREDICTED: TAR DNA-binding protein 43 [Macaca mulatta]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|117644607|emb|CAL37794.1| hypothetical protein [synthetic construct]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|440632909|gb|ELR02828.1| hypothetical protein GMDG_05764 [Geomyces destructans 20631-21]
Length = 544
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D S RG GF+TF A +V +MV H L G + RA P+++ R
Sbjct: 135 RDGASGRSRGFGFLTFKDARTVNVVMVKEHYLDGKIIDPKRAIPRDEQERT--------- 185
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEA+ D + YF
Sbjct: 186 ---------------------------------------SKIFVGGVSQEASELDFKEYF 206
Query: 123 SRFGRILD 130
+FGR++D
Sbjct: 207 MQFGRVVD 214
>gi|149024635|gb|EDL81132.1| rCG31562, isoform CRA_b [Rattus norvegicus]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|148682887|gb|EDL14834.1| mCG16669, isoform CRA_e [Mus musculus]
Length = 416
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 193 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 228
>gi|6678271|ref|NP_031401.1| TAR DNA-binding protein 43 [Homo sapiens]
gi|114553910|ref|XP_514380.2| PREDICTED: TAR DNA-binding protein 43 isoform 3 [Pan troglodytes]
gi|397503024|ref|XP_003822136.1| PREDICTED: TAR DNA-binding protein 43 [Pan paniscus]
gi|20140568|sp|Q13148.1|TADBP_HUMAN RecName: Full=TAR DNA-binding protein 43; Short=TDP-43
gi|901998|gb|AAA70033.1| TAR DNA-binding protein-43 [Homo sapiens]
gi|4886441|emb|CAB43367.1| hypothetical protein [Homo sapiens]
gi|47939520|gb|AAH71657.1| TARDBP protein [Homo sapiens]
gi|49065494|emb|CAG38565.1| TARDBP [Homo sapiens]
gi|63100767|gb|AAH95435.1| TAR DNA binding protein [Homo sapiens]
gi|119592076|gb|EAW71670.1| TAR DNA binding protein, isoform CRA_b [Homo sapiens]
gi|119592077|gb|EAW71671.1| TAR DNA binding protein, isoform CRA_b [Homo sapiens]
gi|130750566|gb|ABO32291.1| TDP43 splice variant 1 [Homo sapiens]
gi|167774073|gb|ABZ92471.1| TAR DNA binding protein [synthetic construct]
gi|208965598|dbj|BAG72813.1| TAR DNA binding protein [synthetic construct]
gi|410251008|gb|JAA13471.1| TAR DNA binding protein [Pan troglodytes]
gi|410302770|gb|JAA29985.1| TAR DNA binding protein [Pan troglodytes]
gi|410342291|gb|JAA40092.1| TAR DNA binding protein [Pan troglodytes]
gi|410342293|gb|JAA40093.1| TAR DNA binding protein [Pan troglodytes]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|21704096|ref|NP_663531.1| TAR DNA-binding protein 43 isoform 1 [Mus musculus]
gi|20140642|sp|Q921F2.1|TADBP_MOUSE RecName: Full=TAR DNA-binding protein 43; Short=TDP-43
gi|15277550|gb|AAH12873.1| TAR DNA binding protein [Mus musculus]
gi|19343817|gb|AAH25544.1| TAR DNA binding protein [Mus musculus]
gi|20379859|gb|AAH27772.1| TAR DNA binding protein [Mus musculus]
gi|21410360|gb|AAH31126.1| TAR DNA binding protein [Mus musculus]
gi|23271460|gb|AAH33475.1| TAR DNA binding protein [Mus musculus]
gi|26328025|dbj|BAC27753.1| unnamed protein product [Mus musculus]
gi|74222000|dbj|BAE26823.1| unnamed protein product [Mus musculus]
gi|148682884|gb|EDL14831.1| mCG16669, isoform CRA_b [Mus musculus]
gi|257222464|gb|ACV52542.1| TDP-43 variant 1 [Mus musculus]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|74149067|dbj|BAE32189.1| unnamed protein product [Mus musculus]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|332250292|ref|XP_003274288.1| PREDICTED: TAR DNA-binding protein 43 [Nomascus leucogenys]
gi|402852911|ref|XP_003891150.1| PREDICTED: TAR DNA-binding protein 43 [Papio anubis]
gi|380783713|gb|AFE63732.1| TAR DNA-binding protein 43 [Macaca mulatta]
gi|384941330|gb|AFI34270.1| TAR DNA-binding protein 43 [Macaca mulatta]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|197097374|ref|NP_001127597.1| TAR DNA-binding protein 43 [Pongo abelii]
gi|75070499|sp|Q5R5W2.1|TADBP_PONAB RecName: Full=TAR DNA-binding protein 43; Short=TDP-43
gi|55732302|emb|CAH92854.1| hypothetical protein [Pongo abelii]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|226507640|ref|NP_001146692.1| uncharacterized protein LOC100280293 [Zea mays]
gi|219888359|gb|ACL54554.1| unknown [Zea mays]
gi|413934065|gb|AFW68616.1| hypothetical protein ZEAMMB73_548572 [Zea mays]
gi|413934066|gb|AFW68617.1| hypothetical protein ZEAMMB73_548572 [Zea mays]
gi|413934067|gb|AFW68618.1| hypothetical protein ZEAMMB73_548572 [Zea mays]
Length = 453
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ FA +V+ + D H L G TV V RA +E+
Sbjct: 47 RGFGFVVFADPAAVDRALQDPHTLDGRTVDVKRALSREE--------------------Q 86
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
A++ A G G ++S KKIFVG LP T + R+YF FG + D
Sbjct: 87 QASKAANPSGGRNSGGGGGGGGGSDASGARTKKIFVGGLPSTLTEDGFRQYFETFGIVTD 146
Query: 131 VYV--------PKRFWFCHLCGRSCSRSCFSKVSRNL 159
V V P+ F F K +L
Sbjct: 147 VVVMYDQNTQRPRGFGFITFDSEDAVDRVLQKTFHDL 183
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFITF S D+V+ ++ T H+LGG V V RA P+E
Sbjct: 152 DQNTQRPRGFGFITFDSEDAVDRVLQKTFHDLGGKLVEVKRALPRE 197
>gi|449016425|dbj|BAM79827.1| eukaryotic translation initiation factor eIF-3 subunit G
[Cyanidioschyzon merolae strain 10D]
Length = 364
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 60 GGYGAYNAYISAATRYAAL----GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATA 115
GG A +A S ATRY GA S YGR E + I + L + AT
Sbjct: 230 GGSMAASATSSGATRYVPPSMRSGASARLREGDSLYGRREENS-----IRISNLTEGATE 284
Query: 116 EDLRRYFSRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSKVS 156
+DLR+ FGR++ +Y+ PK F F RS + C +K++
Sbjct: 285 DDLRQLLEPFGRVVRIYLARDKYTGAPKGFAFAAFAERSAAERCIAKLN 333
>gi|189065487|dbj|BAG35326.1| unnamed protein product [Homo sapiens]
Length = 414
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|168041315|ref|XP_001773137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675496|gb|EDQ61990.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 199
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+TFA +N+++D H + G TV ++ P+E+
Sbjct: 34 KDRSTGHPRGFGFVTFADPAVCDNVVLDKHVIDGRTVEAKKSVPREN------------- 80
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
AA P KKIFVG +P T E+ + YF
Sbjct: 81 ------------MAASKGPKT------------------KKIFVGGIPPSITDEEFKSYF 110
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
+ FG +++ + + H GRS
Sbjct: 111 ASFGSVVEHQIMQD----HSTGRS 130
>gi|17137614|ref|NP_477399.1| TAR DNA-binding protein-43 homolog, isoform A [Drosophila
melanogaster]
gi|21626673|gb|AAF47080.2| TAR DNA-binding protein-43 homolog, isoform A [Drosophila
melanogaster]
Length = 332
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|3882097|dbj|BAA34422.1| TAR-binding protein [Drosophila melanogaster]
gi|3882130|dbj|BAA34430.1| TAR-binding protein [Drosophila melanogaster]
Length = 332
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|219121254|ref|XP_002185854.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582703|gb|ACI65324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 246
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPV-GR-MSH 59
+D+ + RG F+ FA +V+ +M D+HE+ V V RA + + GR SH
Sbjct: 68 RDRHTGDPRGFAFVVFADHATVDLVMDEDSHEINHKIVDVKRAQARGVAPPSIHGRDASH 127
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLR 119
G + + +A+ R LG S G + +++G K+FVG +P + LR
Sbjct: 128 GADPSAHPVPNASERPNPLGG-------NSVGGEDLTPEQMGNKVFVGGIPPHIDRDGLR 180
Query: 120 RYFSRFGRILDVYV 133
F FG + D V
Sbjct: 181 DLFEPFGAVTDAIV 194
>gi|226472218|emb|CAX77145.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 307
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 44/132 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD S+ RG GF+T+ A SV+ + H + G V RA P+E+
Sbjct: 47 KDPRSQKSRGFGFVTYRDASSVDAAQNNRPHTVDGKEVDTKRAMPREE------------ 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
++ +AA+ KKIFVG L ++ T EDL Y
Sbjct: 95 --------TSPEVHAAV-----------------------KKIFVGALKKDVTNEDLSDY 123
Query: 122 FSRFGRILDVYV 133
FS+FG + D +
Sbjct: 124 FSQFGTVTDAQI 135
>gi|56758132|gb|AAW27206.1| SJCHGC06052 protein [Schistosoma japonicum]
gi|226472196|emb|CAX77134.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472198|emb|CAX77135.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472200|emb|CAX77136.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472202|emb|CAX77137.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472206|emb|CAX77139.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472208|emb|CAX77140.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472212|emb|CAX77142.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472214|emb|CAX77143.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472216|emb|CAX77144.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472220|emb|CAX77146.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226472222|emb|CAX77147.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
gi|226473414|emb|CAX71392.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 293
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 44/132 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD S+ RG GF+T+ A SV+ + H + G V RA P+E+
Sbjct: 47 KDPRSQKSRGFGFVTYRDASSVDAAQNNRPHTVDGKEVDTKRAMPREE------------ 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
++ +AA+ KKIFVG L ++ T EDL Y
Sbjct: 95 --------TSPEVHAAV-----------------------KKIFVGALKKDVTNEDLSDY 123
Query: 122 FSRFGRILDVYV 133
FS+FG + D +
Sbjct: 124 FSQFGTVTDAQI 135
>gi|226472210|emb|CAX77141.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 293
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 44/132 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD S+ RG GF+T+ A SV+ + H + G V RA P+E+
Sbjct: 47 KDPRSQKSRGFGFVTYRDASSVDAAQNNRPHTVDGKEVDTKRAMPREE------------ 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
++ +AA+ KKIFVG L ++ T EDL Y
Sbjct: 95 --------TSPEVHAAV-----------------------KKIFVGALKKDVTNEDLSDY 123
Query: 122 FSRFGRILDVYV 133
FS+FG + D +
Sbjct: 124 FSQFGTVTDAQI 135
>gi|408396972|gb|EKJ76123.1| hypothetical protein FPSE_03598 [Fusarium pseudograminearum CS3096]
Length = 546
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF A +V +MV H L G + RA P+++
Sbjct: 153 RDSSTGRSRGFGFLTFKDAKTVNIVMVKEHFLDGKIIDPKRAIPRDE------------- 199
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QE T ++ + YF
Sbjct: 200 -----------------------------------QEKTSKIFVGGVSQETTDQEFKEYF 224
Query: 123 SRFGRILD 130
++FGR++D
Sbjct: 225 AQFGRVVD 232
>gi|391332405|ref|XP_003740625.1| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like
[Metaseiulus occidentalis]
Length = 259
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TFA SVE ++ + HEL G + A PK
Sbjct: 55 KDPTTRRSRGFGFVTFADPASVEKVLANGPHELDGKKIDPKIAFPK-------------- 100
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KK+FVG L T ED++ Y
Sbjct: 101 ----RAHPKMVTRT--------------------------KKVFVGGLSAPTTLEDVKNY 130
Query: 122 FSRFGRILDVYV 133
F +FGRI D +
Sbjct: 131 FQQFGRIEDAML 142
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE-------------D 49
D+ + HRG GF+TF D V+ + V HE+ V +A PKE +
Sbjct: 145 DKQTNRHRGFGFVTFELEDVVDKVCEVHFHEINNKMVECKKAQPKEVMMPNSVARGRGAE 204
Query: 50 DFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 87
P+G ++ G+ AY +R G PT + +P
Sbjct: 205 LVWPLGALTEAGFPAY-----GYSRGGYPGYPTGFGYP 237
>gi|116787897|gb|ABK24684.1| unknown [Picea sitchensis]
Length = 375
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 45/128 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+T+A A V+ ++ D H L G TV + R P+ G S G
Sbjct: 79 KDRHTGQPRGFGFVTYADASVVDKVIEDKHILDGRTVEIKRTIPR-------GNTSKG-- 129
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
P KKIFVG +P T ++ + YF
Sbjct: 130 ------------------PKT------------------KKIFVGGIPTTITEDEFKDYF 153
Query: 123 SRFGRILD 130
S+FG++ +
Sbjct: 154 SKFGKVAE 161
>gi|242053621|ref|XP_002455956.1| hypothetical protein SORBIDRAFT_03g027920 [Sorghum bicolor]
gi|241927931|gb|EES01076.1| hypothetical protein SORBIDRAFT_03g027920 [Sorghum bicolor]
Length = 349
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ ++ RG GFITFA V+ ++ D H + G V + R PK
Sbjct: 47 KDRYTQKPRGFGFITFADPAVVDRVIEDEHVINGKLVEIKRTIPK--------------- 91
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
GA L D KKIFVG LP ++ + +F
Sbjct: 92 ----------------GAAPLKDFK-------------TKKIFVGGLPSALKEDEFKEFF 122
Query: 123 SRFGRILD 130
S+FG++++
Sbjct: 123 SKFGKVVE 130
>gi|388500070|gb|AFK38101.1| unknown [Lotus japonicus]
gi|388508218|gb|AFK42175.1| unknown [Lotus japonicus]
Length = 373
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 44/131 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT+A V+ ++ DTH + G V + R P+
Sbjct: 78 KDRKTAQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPR--------------- 122
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A+G+ KKIFVG +P T ++ R +F
Sbjct: 123 -------------GAVGSKDFKT----------------KKIFVGGIPSNVTEDEFRDFF 153
Query: 123 SRFGRILDVYV 133
+R+G + D +
Sbjct: 154 TRYGEVKDNQI 164
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 3 KDQGSKAHRGIGFITFASADSVENL--MVDTHELGGSTVVVDRATPKE 48
+D + RG GFITF S D+V++L M + + G+ V + +A PK+
Sbjct: 166 RDHSTNRSRGFGFITFDSEDAVDDLLSMGNKIDFAGTQVEIKKAEPKK 213
>gi|396473500|ref|XP_003839355.1| hypothetical protein LEMA_P030280.1 [Leptosphaeria maculans JN3]
gi|312215924|emb|CBX95876.1| hypothetical protein LEMA_P030280.1 [Leptosphaeria maculans JN3]
Length = 547
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 48/131 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF V +MV H L G + RA P+E+ R
Sbjct: 120 RDSATGRSRGFGFLTFRDPKCVNIVMVKEHYLDGKIIDPKRAIPREEQER---------- 169
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KIFVG + QEAT ED +F
Sbjct: 170 --------------------------------------TSKIFVGGVSQEATEEDFTAFF 191
Query: 123 SRFGRILDVYV 133
+FGR++D +
Sbjct: 192 KQFGRVVDATL 202
>gi|189234173|ref|XP_968418.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein
[Tribolium castaneum]
Length = 373
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF+ SV+N++ V H L G + ATPK +P
Sbjct: 89 KDPVTQRSRGFGFITFSEPSSVDNVLKVPIHTLDGKKIDPKHATPKNRPKQP-------- 140
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +A++++ Y
Sbjct: 141 -------------------------------------NKTKKIFVGGVSQDTSADEVKAY 163
Query: 122 FSRFGRI 128
FS+FG++
Sbjct: 164 FSQFGKV 170
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 175 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 223
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+FVG L + ++E LR YF FG + DV + K
Sbjct: 57 KLFVGGLSWQTSSEKLREYFGMFGNVTDVLIMK 89
>gi|297829856|ref|XP_002882810.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297328650|gb|EFH59069.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 231
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 42/130 (32%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+ +D+ + RG GFITFA V+ ++ D H + G V + R PK
Sbjct: 50 IMRDRHTGQPRGFGFITFADPSVVDKVIEDNHIINGKQVEIKRTIPK------------- 96
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
GA G +S KKIFVG +P T ++L+
Sbjct: 97 --GA---------------------------GGNQSKDFKTKKIFVGGIPSTVTEDELKD 127
Query: 121 YFSRFGRILD 130
+FS++G +++
Sbjct: 128 FFSKYGNVVE 137
>gi|168000120|ref|XP_001752764.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695927|gb|EDQ82268.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 176
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+TFA D + +++D H + G TV ++ P+E+
Sbjct: 34 KDRSTGHPRGFGFVTFADPDVCDKVVLDKHVIDGRTVEAKKSVPREN------------- 80
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A P KKIFVG +P T E+ + YF
Sbjct: 81 ------------LATSKGPKT------------------KKIFVGGIPPSITDEEFKSYF 110
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
+ FG +++ + + H GRS
Sbjct: 111 AGFGSVMEHQIMQD----HSTGRS 130
>gi|224129580|ref|XP_002320621.1| predicted protein [Populus trichocarpa]
gi|222861394|gb|EEE98936.1| predicted protein [Populus trichocarpa]
Length = 183
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
DQ ++ RG GFITF + D+V+N++ T HEL G V V RA PK D P G GG
Sbjct: 127 DQQTQRPRGFGFITFDTEDAVDNVLQKTFHELNGKLVEVKRALPK--DANPGGEGRDGG 183
>gi|427777643|gb|JAA54273.1| Putative heteroproteinous nuclear ribonucleoprotein at 87f
[Rhipicephalus pulchellus]
Length = 309
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 43/130 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GFITF A V++ H++ G V RA P+E+ RP
Sbjct: 47 RDPSTKKSRGFGFITFRRAHMVDDAQAARPHKVDGREVEPKRAVPREEAGRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
+Q KK+FVG L + DLR Y
Sbjct: 99 ----------------------------------EAQATVKKVFVGGLKDDVDESDLRDY 124
Query: 122 FSRFGRILDV 131
FS+FG IL V
Sbjct: 125 FSQFGNILSV 134
>gi|76154551|gb|AAX26015.2| SJCHGC08328 protein [Schistosoma japonicum]
Length = 167
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 31/40 (77%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+FVG + + TA+ LR +FS+FGR++DV++PK F
Sbjct: 85 QEVSRKVFVGGITEFITADLLRDHFSQFGRVIDVFIPKPF 124
>gi|257215987|emb|CAX83143.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215989|emb|CAX83144.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215991|emb|CAX83145.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215993|emb|CAX83146.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215995|emb|CAX83147.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215997|emb|CAX83148.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215999|emb|CAX83149.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257216001|emb|CAX83150.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257216003|emb|CAX83151.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257216005|emb|CAX83152.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
Length = 168
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD + RG GFIT+ + V+ + HE+ G TV RA P+ED P M+
Sbjct: 50 KDGRTNRSRGFGFITYKEPEMVDAAQANRPHEIDGKTVEAKRAMPREDSNSPESHMTV-- 107
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
K+FVG L ++ T E+LR Y
Sbjct: 108 ----------------------------------------TKLFVGGLKKDVTHEELREY 127
Query: 122 FSRFGRILDVYV 133
FS++G I + V
Sbjct: 128 FSKYGNITECEV 139
>gi|324511674|gb|ADY44854.1| RNA-binding protein Musashi Rbp6 [Ascaris suum]
Length = 345
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 47/133 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GFITFA SVE ++ D HEL G + A PK
Sbjct: 77 RDPATKRARGFGFITFADPASVEKVLAHDQHELDGKKIDPKVAFPK-------------- 122
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIG-KKIFVGRLPQEATAEDLRR 120
R + I KK+F+G L +T ED+R
Sbjct: 123 -------------------------------RAQPKMIIKTKKVFIGGLSATSTLEDMRN 151
Query: 121 YFSRFGRILDVYV 133
YF ++G++ D +
Sbjct: 152 YFEQYGKVEDAML 164
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D+ ++ HRG GFITF + D + + + HE+ G V +A PKE PV
Sbjct: 167 DKTTQRHRGFGFITFDNDDVSDKVCEIHFHEINGKMVECKKAQPKE-VMLPVQLNKSRAA 225
Query: 63 GAYN----------AYISAATRYAALGAPTLYDHPGSFY 91
A N AY S R GA LY PG F+
Sbjct: 226 AARNLYGLGPEQLLAYASYLPRLGTYGANMLY--PGGFF 262
>gi|195149343|ref|XP_002015617.1| GL10927 [Drosophila persimilis]
gi|198462059|ref|XP_001352323.2| GA10247 [Drosophila pseudoobscura pseudoobscura]
gi|194109464|gb|EDW31507.1| GL10927 [Drosophila persimilis]
gi|198139765|gb|EAL29286.2| GA10247 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|452981460|gb|EME81220.1| hypothetical protein MYCFIDRAFT_211785, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 353
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 45/123 (36%), Gaps = 48/123 (39%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+TF +V +MV H L G + RA P+++ R
Sbjct: 144 RGFGFLTFKDPKNVNTVMVKEHSLDGKLIDPKRAIPRDEQERTA---------------- 187
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KIFVG + QEAT D + +F +FGR+LD
Sbjct: 188 --------------------------------KIFVGGVSQEATEADFKDFFMKFGRVLD 215
Query: 131 VYV 133
+
Sbjct: 216 ATL 218
>gi|195382465|ref|XP_002049950.1| GJ21868 [Drosophila virilis]
gi|194144747|gb|EDW61143.1| GJ21868 [Drosophila virilis]
Length = 539
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|255574941|ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
gi|223532245|gb|EEF34049.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 470
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 36/165 (21%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA + ++ ++ D H + G TV +A +E+
Sbjct: 39 RDKTTGRPRGFGFVVFADPNILDRVLQDKHTIDGRTVEAKKALSREEQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
R L P G KKIFVG LP T ++ R+YF
Sbjct: 87 -------QTNARSGNLNPPR---------NSGSGGNIRTKKIFVGGLPPALTDDEFRQYF 130
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSKVSRNL 159
+G + DV + P+ F F K +L
Sbjct: 131 EAYGLVTDVVIMYDQNTQRPRGFGFISFDNEDAVDRVLHKTFHDL 175
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFI+F + D+V+ ++ T H+L G V V RA PK+
Sbjct: 144 DQNTQRPRGFGFISFDNEDAVDRVLHKTFHDLNGKQVEVKRALPKD 189
>gi|359488807|ref|XP_002272790.2| PREDICTED: nuclear pore membrane glycoprotein 210-like [Vitis
vinifera]
Length = 2363
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+T+A V+ ++ DTH + G V + R PK
Sbjct: 2061 KDRKTGQPRGFGFVTYADLSVVDQVIQDTHVINGKQVEIKRTIPK--------------- 2105
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A+GA KKIFVG +P T E+ + +F
Sbjct: 2106 -------------GAIGAKDFKT----------------KKIFVGGIPATVTEEEFKDFF 2136
Query: 123 SRFGRILD 130
+++G + D
Sbjct: 2137 TQYGEVKD 2144
>gi|195028318|ref|XP_001987023.1| GH20198 [Drosophila grimshawi]
gi|193903023|gb|EDW01890.1| GH20198 [Drosophila grimshawi]
Length = 545
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ ++DLR YFS+FG + DV++P+ F
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF 227
>gi|71894865|ref|NP_001026049.1| TAR DNA-binding protein 43 [Gallus gallus]
gi|82233907|sp|Q5ZLN5.1|TADBP_CHICK RecName: Full=TAR DNA-binding protein 43; Short=TDP-43
gi|53129069|emb|CAG31358.1| hypothetical protein RCJMB04_5g9 [Gallus gallus]
Length = 414
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 31/36 (86%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++L+++F+++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPF 226
>gi|297267337|ref|XP_001109416.2| PREDICTED: RNA-binding protein 4 isoform 5 [Macaca mulatta]
Length = 693
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 62 YGAYNAYISAATRYAALGA--PTLYDHPGSFYGRGESSQ----RIGKKIFVGRLPQEATA 115
YG A S+ Y A G+ + + P S+ + SS R+ K+F+G LP+EAT
Sbjct: 286 YGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGALVRM-VKLFIGNLPREATE 344
Query: 116 EDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
+++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 345 QEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 384
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVS 156
KIFVG + T+++LR F R GR+++ V K + F H+ + +++ ++++
Sbjct: 48 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLN 101
>gi|168003443|ref|XP_001754422.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168003449|ref|XP_001754425.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694524|gb|EDQ80872.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694527|gb|EDQ80875.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 177
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+TFA +N+++D H + G TV ++ P+E+
Sbjct: 34 KDRSTGHPRGFGFVTFADPAVCDNVVLDKHVIDGRTVEAKKSVPREN------------- 80
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
AA P KKIFVG +P T E+ + YF
Sbjct: 81 ------------MAASKGPKT------------------KKIFVGGIPPSITDEEFKSYF 110
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
FG +++ + + H GRS
Sbjct: 111 GGFGSVVEHQIMQD----HSTGRS 130
>gi|270002456|gb|EEZ98903.1| hypothetical protein TcasGA2_TC004519 [Tribolium castaneum]
Length = 358
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF+ SV+N++ V H L G + ATPK +P
Sbjct: 74 KDPVTQRSRGFGFITFSEPSSVDNVLKVPIHTLDGKKIDPKHATPKNRPKQP-------- 125
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +A++++ Y
Sbjct: 126 -------------------------------------NKTKKIFVGGVSQDTSADEVKAY 148
Query: 122 FSRFGRI 128
FS+FG++
Sbjct: 149 FSQFGKV 155
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 160 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 208
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+FVG L + ++E LR YF FG + DV + K
Sbjct: 42 KLFVGGLSWQTSSEKLREYFGMFGNVTDVLIMK 74
>gi|224102217|ref|XP_002312594.1| predicted protein [Populus trichocarpa]
gi|222852414|gb|EEE89961.1| predicted protein [Populus trichocarpa]
Length = 195
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 36/131 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA ++ ++ DTH + G TV + + + P S GG
Sbjct: 39 KDKTTGRPRGFGFVVFADPSVLDRVLQDTHTIDGRTVKEQQTNARAGNLNPARNTSSGG- 97
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ T KKIFVG LP T + R+YF
Sbjct: 98 -------NIRT----------------------------KKIFVGGLPPTLTDDGFRQYF 122
Query: 123 SRFGRILDVYV 133
FG + DV +
Sbjct: 123 EAFGLVTDVVI 133
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFI+F S D+V+ ++ T H+L G V V RA PKE
Sbjct: 136 DQSTQRPRGFGFISFDSEDAVDRVLQRTFHDLNGKQVEVKRALPKE 181
>gi|326932427|ref|XP_003212319.1| PREDICTED: TAR DNA-binding protein 43-like [Meleagris gallopavo]
Length = 414
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 31/36 (86%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++L+++F+++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPF 226
>gi|241953399|ref|XP_002419421.1| cleavage and polyadenylation factor CF I component, putative;
nuclear polyadenylated RNA-binding protein, putative
[Candida dubliniensis CD36]
gi|223642761|emb|CAX43015.1| cleavage and polyadenylation factor CF I component, putative
[Candida dubliniensis CD36]
Length = 505
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF+TF A SV+ L+ D H L G + RA KED
Sbjct: 219 KDSATGRSRGFGFLTFEDAKSVDALLKDRHVLDGKLIDPKRAISKED------------- 265
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+++G KIFVG + T E+ +F
Sbjct: 266 ----------------------------------QEKVG-KIFVGGIDPMVTEEEFDNFF 290
Query: 123 SRFGRILD 130
S+FG+I+D
Sbjct: 291 SQFGKIID 298
>gi|68465675|ref|XP_723199.1| likely RNA binding protein [Candida albicans SC5314]
gi|68465968|ref|XP_723052.1| likely RNA binding protein [Candida albicans SC5314]
gi|46445066|gb|EAL04337.1| likely RNA binding protein [Candida albicans SC5314]
gi|46445222|gb|EAL04492.1| likely RNA binding protein [Candida albicans SC5314]
Length = 475
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF+TF A SV+ L+ D H L G + RA KED
Sbjct: 195 KDSATGRSRGFGFLTFEDAKSVDALLKDRHVLDGKLIDPKRAISKED------------- 241
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+++G KIFVG + T E+ +F
Sbjct: 242 ----------------------------------QEKVG-KIFVGGIDPMVTEEEFDNFF 266
Query: 123 SRFGRILD 130
S+FG+I+D
Sbjct: 267 SQFGKIID 274
>gi|357124085|ref|XP_003563737.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like isoform 1 [Brachypodium distachyon]
Length = 410
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 47/144 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G TV V R P+E+ MS
Sbjct: 116 KDKHTKMPRGFGFVTFSDPSVIDRVLEDEHTIDGRTVEVKRTVPREE-------MS---- 164
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
D P + +KIFVG +P T L+ +F
Sbjct: 165 --------------------TKDGPKT------------RKIFVGGIPTSLTEGKLKEHF 192
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G++ + + H GRS
Sbjct: 193 SSYGKVEE----HQIMVDHSTGRS 212
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48
D + RG GF+TF S D+VE +M + H+LGG V + RA PK+
Sbjct: 206 DHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGKQVEIKRAEPKK 252
>gi|238880917|gb|EEQ44555.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 475
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF+TF A SV+ L+ D H L G + RA KED
Sbjct: 195 KDSATGRSRGFGFLTFEDAKSVDALLKDRHVLDGKLIDPKRAISKED------------- 241
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+++G KIFVG + T E+ +F
Sbjct: 242 ----------------------------------QEKVG-KIFVGGIDPMVTEEEFDNFF 266
Query: 123 SRFGRILD 130
S+FG+I+D
Sbjct: 267 SQFGKIID 274
>gi|116283521|gb|AAH29728.1| Tardbp protein [Mus musculus]
Length = 288
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 30/37 (81%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 190 SRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|119594961|gb|EAW74555.1| RNA binding motif protein 4, isoform CRA_b [Homo sapiens]
Length = 315
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|148682885|gb|EDL14832.1| mCG16669, isoform CRA_c [Mus musculus]
Length = 289
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 30/37 (81%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 192 SRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 228
>gi|296087606|emb|CBI34862.3| unnamed protein product [Vitis vinifera]
Length = 281
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+T+A V+ ++ DTH + G V + R PK
Sbjct: 74 KDRKTGQPRGFGFVTYADLSVVDQVIQDTHVINGKQVEIKRTIPK--------------- 118
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A+GA KKIFVG +P T E+ + +F
Sbjct: 119 -------------GAIGAKDFKT----------------KKIFVGGIPATVTEEEFKDFF 149
Query: 123 SRFGRILD 130
+++G + D
Sbjct: 150 TQYGEVKD 157
>gi|432888609|ref|XP_004075076.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 346
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
KIFVG LPQEAT E+++ F +G + + + K F F H+ R + +K +NL
Sbjct: 3 KIFVGNLPQEATEEEIKALFEEYGTVTECDIVKNFAFVHMEDRKAA----TKAIKNL 55
>gi|356558851|ref|XP_003547716.1| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Glycine
max]
Length = 372
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 42/128 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT+A V+ ++ DTH + G V + R P+
Sbjct: 75 KDRKTGQPRGFGFITYADPSVVDTVIEDTHIINGKQVEIKRTIPR--------------- 119
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A+G+ S KKIFVG +P T ++ R +F
Sbjct: 120 -------------GAVGS--------------NSKDFRTKKIFVGGIPSTVTEDEFRDFF 152
Query: 123 SRFGRILD 130
+R+G + D
Sbjct: 153 TRYGEVKD 160
>gi|281494221|gb|ADA71972.1| TDP-43 variant 2 [Mus musculus]
Length = 304
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
P S G E + +K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 178 PNSKQGPDEPLR--SRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|41393063|ref|NP_958884.1| TAR DNA-binding protein 43 [Danio rerio]
gi|29387090|gb|AAH49348.1| TAR DNA binding protein [Danio rerio]
Length = 412
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G + DV++PK F
Sbjct: 197 RKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPF 232
>gi|357521485|ref|XP_003631031.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
gi|355525053|gb|AET05507.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
Length = 476
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 77/194 (39%), Gaps = 47/194 (24%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S ++V+ +++ T HEL G V V RA PKE P R GY
Sbjct: 123 DHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPA-RSPLSGY 181
Query: 63 -----------GAYNAYISAAT----------RYAAL-GAPTLYDHPGSFYGRGE----- 95
+N S +T R++ + G Y GS YG G
Sbjct: 182 NYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRNAYAPFGSGYGMGMNFEPG 241
Query: 96 -SSQRIGKKIFVGRLPQEATAEDLRRYF----SRFGRILDVYVPKRFWFCHLCGRSCSRS 150
S G F G L + L YF +RFG + + G S S
Sbjct: 242 LSPGFGGNASFNGNL---SYGRGLNPYFIGGSNRFGSPV----------GYESGNGGSNS 288
Query: 151 CFSKVSRNLWTAGC 164
FS V+RNLW G
Sbjct: 289 FFSSVTRNLWGNGS 302
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 40/146 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ F + ++ + H + G V +A P++D
Sbjct: 22 KDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEAKKAVPRDDQ------------ 69
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ + T + G+P G G + +KIFVG L T D ++YF
Sbjct: 70 -----NVLSRTSGSIHGSP----------GPGRT-----RKIFVGGLASTVTESDFKKYF 109
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 110 DQFGTITDVVVMYDHNTQRPRGFGFI 135
>gi|384244915|gb|EIE18412.1| hypothetical protein COCSUDRAFT_68330 [Coccomyxa subellipsoidea
C-169]
Length = 534
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD---FRPVG 55
+P+D+ + A + GF TF + + ++ + H + G TV V+ A P+ + + G
Sbjct: 43 LPRDRHNGARKNFGFATFENEEGLQRTLAAGTEHIIAGKTVRVNVAGPRPELPLLYLQQG 102
Query: 56 RMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATA 115
R+ G +A A G D P + RG G +I+VG +P +
Sbjct: 103 RVQQAPMGPPSAGGMAGAEGGIGGPAVGGD-PTAAANRGS-----GPRIYVGGIPTAVSE 156
Query: 116 EDLRRYFSRFGRILDVYVPK 135
+R +F+++G+++DVY PK
Sbjct: 157 TMVRNHFTQWGQVVDVYFPK 176
>gi|126328724|ref|XP_001364432.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Monodelphis
domestica]
Length = 304
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|224135041|ref|XP_002327552.1| predicted protein [Populus trichocarpa]
gi|222836106|gb|EEE74527.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 49/144 (34%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED-DFRPVGRMSHGGY 62
D+ S RG GF+TFA + ++ + H + G V V R P+ED D + V R
Sbjct: 34 DRHSGRPRGFGFVTFADPAVADRVLEEDHVIDGRAVEVKRTVPREDMDVKGVTRT----- 88
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
KKIFVG +P T ++L+ YF
Sbjct: 89 ---------------------------------------KKIFVGGIPPSLTEDELKEYF 109
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G I+D + H GRS
Sbjct: 110 SVYGSIVD----HQIMLDHKTGRS 129
>gi|345480430|ref|XP_001601630.2| PREDICTED: hypothetical protein LOC100117370 [Nasonia vitripennis]
Length = 377
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLC 143
KIFVGRLP+ +E+LR F RFG + + V R+ F H+
Sbjct: 16 KIFVGRLPENCRSEELRNLFLRFGEVTECDVMNRYGFVHMA 56
>gi|56682929|ref|NP_001008545.1| TAR DNA-binding protein 43 isoform 2 [Mus musculus]
gi|354496956|ref|XP_003510589.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Cricetulus
griseus]
gi|33086856|gb|AAP92691.1| TARDBP S9 [Mus musculus]
Length = 304
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|261488392|emb|CBH19571.1| RNA recognition motif containing protein [Oryza sativa Indica
Group]
Length = 188
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFIT+++ V+ +M D HE G V + R PK+
Sbjct: 56 RDKHTSQPRGFGFITYSNPAVVDRVMDDIHEFNGKQVEIKRTIPKD-------------- 101
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+S KKIFVG LPQ +D + +F
Sbjct: 102 ------------------------------SVQSKDFKTKKIFVGGLPQAQAEDDFKHFF 131
Query: 123 SRFGRILD 130
++G ++D
Sbjct: 132 QKYGPVVD 139
>gi|119594960|gb|EAW74554.1| RNA binding motif protein 4, isoform CRA_a [Homo sapiens]
Length = 326
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 14 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 66
>gi|224065561|ref|XP_002301858.1| predicted protein [Populus trichocarpa]
gi|222843584|gb|EEE81131.1| predicted protein [Populus trichocarpa]
Length = 182
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFITF S D+V+N++ T HEL G V V RA PK+
Sbjct: 126 DQQTQRPRGFGFITFDSEDAVDNVLQKTFHELNGKLVEVKRALPKD 171
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
KKIFVG LP T + R+YF +G + DV V P+ F F +
Sbjct: 92 KKIFVGGLPSTVTEDGFRQYFQSYGHVNDVVVMYDQQTQRPRGFGFITFDSEDAVDNVLQ 151
Query: 154 KVSRNL 159
K L
Sbjct: 152 KTFHEL 157
>gi|119594962|gb|EAW74556.1| RNA binding motif protein 4, isoform CRA_c [Homo sapiens]
Length = 79
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|86824038|gb|AAI05528.1| TAR DNA binding protein [Bos taurus]
Length = 298
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|449468578|ref|XP_004151998.1| PREDICTED: DAZ-associated protein 1-like [Cucumis sativus]
gi|449509419|ref|XP_004163583.1| PREDICTED: DAZ-associated protein 1-like [Cucumis sativus]
Length = 436
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
DQ ++ RG GFITF + D+V+ ++ + HEL G V V RA PK+ + GR + Y
Sbjct: 144 DQNTQRPRGFGFITFDNEDAVDRVLYKSFHELNGKLVEVKRALPKDANPGSGGRAGYQNY 203
Query: 63 GA 64
GA
Sbjct: 204 GA 205
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 28/131 (21%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ F+ ++ ++ D H + G V RA +E+
Sbjct: 39 RDKTTGRPRGFGFVVFSDPSLLDQVLQDKHTIDGRQVEAKRALSREEQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+TR + G F R KKIFVG LP T + R+YF
Sbjct: 87 -------QTSTRSGINNSGRSSGGSGYF--------RT-KKIFVGGLPSALTEDGFRQYF 130
Query: 123 SRFGRILDVYV 133
+G++ DV +
Sbjct: 131 ESYGQVTDVVI 141
>gi|56682931|ref|NP_001003899.1| TAR DNA-binding protein 43 isoform 3 [Mus musculus]
gi|354496954|ref|XP_003510588.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Cricetulus
griseus]
gi|20071690|gb|AAH27105.1| TAR DNA binding protein [Mus musculus]
gi|33086850|gb|AAP92688.1| TARDBP S6 [Mus musculus]
gi|148682883|gb|EDL14830.1| mCG16669, isoform CRA_a [Mus musculus]
Length = 295
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|397517077|ref|XP_003828746.1| PREDICTED: RNA-binding protein 4 isoform 5 [Pan paniscus]
Length = 155
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|149024634|gb|EDL81131.1| rCG31562, isoform CRA_a [Rattus norvegicus]
gi|149024636|gb|EDL81133.1| rCG31562, isoform CRA_a [Rattus norvegicus]
Length = 295
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|126328726|ref|XP_001364580.1| PREDICTED: TAR DNA-binding protein 43-like isoform 4 [Monodelphis
domestica]
Length = 295
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|355723255|gb|AES07833.1| TAR DNA binding protein isoform 4 [Mustela putorius furo]
Length = 280
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|346326836|gb|EGX96432.1| RNA recognition protein, RNP-1 [Cordyceps militaris CM01]
Length = 525
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF A +V +MV H L G + RA P+++
Sbjct: 148 RDSNTGRSRGFGFLTFKDAKTVNIVMVKEHYLDGKIIDPKRAIPRDE------------- 194
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + Q+ T ++ R +F
Sbjct: 195 -----------------------------------QEKTSKIFVGGVSQDTTDQEFREFF 219
Query: 123 SRFGRILD 130
++FGR++D
Sbjct: 220 AQFGRVID 227
>gi|432857373|ref|XP_004068664.1| PREDICTED: TAR DNA-binding protein 43-like [Oryzias latipes]
Length = 402
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T +DLR++F ++G + DV++PK F
Sbjct: 192 RKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPF 227
>gi|357495375|ref|XP_003617976.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like protein
[Medicago truncatula]
gi|355519311|gb|AET00935.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like protein
[Medicago truncatula]
Length = 479
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 78/194 (40%), Gaps = 47/194 (24%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S ++V+ +++ T HEL G V V RA PKE P R GY
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPA-RSPLSGY 198
Query: 63 -----------GAYNAYISAAT----------RYAAL-GAPTLYDHPGSFYGRGESSQR- 99
+N S +T R++ + G Y GS YG G + +
Sbjct: 199 NYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRNAYAPFGSGYGMGMNFEPG 258
Query: 100 -----IGKKIFVGRLPQEATAEDLRRYF----SRFGRILDVYVPKRFWFCHLCGRSCSRS 150
G F G L + L YF +RFG + + G S S
Sbjct: 259 LSPGFGGNASFNGNL---SYGRGLNPYFIGGSNRFGSPV----------GYESGNGGSNS 305
Query: 151 CFSKVSRNLWTAGC 164
FS V+RNLW G
Sbjct: 306 FFSSVTRNLWGNGS 319
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ F + ++ + H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ + T + G+P G G + +KIFVG L T D ++YF
Sbjct: 87 -----NVLSRTSGSIHGSP----------GPGRT-----RKIFVGGLASTVTESDFKKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 DQFGTITDVVV 137
>gi|320581591|gb|EFW95811.1| Subunit of cleavage factor I [Ogataea parapolymorpha DL-1]
Length = 431
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 51/144 (35%), Gaps = 52/144 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF+TFAS+ SV+ ++ TH L G + RA PKE+
Sbjct: 139 KDNATGRSRGFGFLTFASSSSVDEVLKKTHVLDGKLIDPKRAIPKEE------------- 185
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + E T + YF
Sbjct: 186 -----------------------------------QDKTGKIFVGGVAPEVTEAEFTEYF 210
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
+FG I+D + GRS
Sbjct: 211 QQFGNIID----SQLMLDKDTGRS 230
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRS 146
K+F+G L E T E ++ YFS+FG ++D+ + K + GRS
Sbjct: 107 KMFIGGLNWETTEESMKNYFSQFGDVIDLTIMK----DNATGRS 146
>gi|225458908|ref|XP_002283509.1| PREDICTED: uncharacterized protein LOC100255821 [Vitis vinifera]
Length = 471
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 41/133 (30%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT--HELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+D G G GF+TFA A S+ + D H + G V V RA K G+ +
Sbjct: 38 RDSGRTPRGGFGFVTFADAASLSRALQDQQQHFIQGQRVEVKRAMNK-------GQRNLD 90
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
G G N KKIFVG L T E+ +
Sbjct: 91 GSGNNNF--------------------------------TSKKIFVGGLSSNLTEEEFKN 118
Query: 121 YFSRFGRILDVYV 133
YF RFGRI DV V
Sbjct: 119 YFERFGRITDVVV 131
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF S +SVE++M + +EL G V V RA PKE
Sbjct: 134 DSATRRPRGFGFITFESEESVEHVMQNNFYELNGKRVEVKRAVPKE 179
>gi|56682935|ref|NP_001003898.1| TAR DNA-binding protein 43 isoform 5 [Mus musculus]
gi|26337419|dbj|BAC32395.1| unnamed protein product [Mus musculus]
gi|33086852|gb|AAP92689.1| TARDBP S7 [Mus musculus]
gi|148682888|gb|EDL14835.1| mCG16669, isoform CRA_f [Mus musculus]
gi|257222466|gb|ACV52543.1| TDP-43 variant 5 [Mus musculus]
Length = 298
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|356501721|ref|XP_003519672.1| PREDICTED: uncharacterized protein LOC100799330 [Glycine max]
Length = 475
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ F+ E ++ + H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
L + GS +G + +KIFVG L T D ++YF
Sbjct: 87 ------------------NILSRNSGSIHGSPGPGRT--RKIFVGGLASTVTESDFKKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 DQFGTITDVVV 137
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S ++V+ +++ T HEL G V V RA PKE P R GGY
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPS-RTPLGGY 198
>gi|348521706|ref|XP_003448367.1| PREDICTED: TAR DNA-binding protein 43-like [Oreochromis niloticus]
Length = 402
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T +DLR++F ++G + DV++PK F
Sbjct: 192 RKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPF 227
>gi|148682886|gb|EDL14833.1| mCG16669, isoform CRA_d [Mus musculus]
Length = 300
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 193 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 228
>gi|345312744|ref|XP_003429290.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
Length = 143
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|327289700|ref|XP_003229562.1| PREDICTED: RNA-binding protein 4B-like [Anolis carolinensis]
Length = 354
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++GR+L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGRVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|302142161|emb|CBI19364.3| unnamed protein product [Vitis vinifera]
Length = 377
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 41/133 (30%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT--HELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+D G G GF+TFA A S+ + D H + G V V RA K G+ +
Sbjct: 38 RDSGRTPRGGFGFVTFADAASLSRALQDQQQHFIQGQRVEVKRAMNK-------GQRNLD 90
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
G G N KKIFVG L T E+ +
Sbjct: 91 GSGNNNF--------------------------------TSKKIFVGGLSSNLTEEEFKN 118
Query: 121 YFSRFGRILDVYV 133
YF RFGRI DV V
Sbjct: 119 YFERFGRITDVVV 131
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF S +SVE++M + +EL G V V RA PKE
Sbjct: 134 DSATRRPRGFGFITFESEESVEHVMQNNFYELNGKRVEVKRAVPKE 179
>gi|147795790|emb|CAN67607.1| hypothetical protein VITISV_004303 [Vitis vinifera]
Length = 507
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 41/133 (30%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT--HELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+D G G GF+TFA A S+ + D H + G V V RA K G+ +
Sbjct: 38 RDSGRTPRGGFGFVTFADAASLSRALQDQQQHFIQGQRVEVKRAMNK-------GQRNLD 90
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 120
G G N KKIFVG L T E+ +
Sbjct: 91 GSGNNNF--------------------------------TSKKIFVGGLSSNLTEEEFKN 118
Query: 121 YFSRFGRILDVYV 133
YF RFGRI DV V
Sbjct: 119 YFERFGRITDVVV 131
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF S +SVE++M + +EL G V V RA PKE
Sbjct: 134 DSATRRPRGFGFITFESEESVEHVMQNNFYELNGKRVEVKRAVPKE 179
>gi|313231345|emb|CBY08460.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP---VGRMSH 59
D+ + HRG GF+TF S D+VEN++ + HE+ TV +A PK D P RM
Sbjct: 48 DRQTNRHRGFGFVTFDSEDAVENVVEIHYHEINNKTVECKKAQPK-DVMMPNQSQKRM-- 104
Query: 60 GGYGAYNAYISAATRYAALGAPTLYDHP 87
A A++ ++ A G P +Y +P
Sbjct: 105 ----ANQAFLVQGSQPAHFGLPGVYLNP 128
>gi|126328722|ref|XP_001364507.1| PREDICTED: TAR DNA-binding protein 43-like isoform 3 [Monodelphis
domestica]
Length = 302
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|451993278|gb|EMD85752.1| hypothetical protein COCHEDRAFT_113051, partial [Cochliobolus
heterostrophus C5]
Length = 168
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 52/150 (34%), Gaps = 56/150 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF V +MV H L G + RA P+E+
Sbjct: 32 RDSATGRSRGFGFLTFKDPKCVNIVMVKEHYLDGKIIDPKRAIPREE------------- 78
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QEAT ED +F
Sbjct: 79 -----------------------------------QERTSKIFVGGVSQEATEEDFTNFF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCG 144
+FGR++D + P+ F F G
Sbjct: 104 KQFGRVVDATLMMDKETGRPRGFGFVTFDG 133
>gi|410045417|ref|XP_003951989.1| PREDICTED: RNA-binding protein 4B isoform 1 [Pan troglodytes]
gi|426369355|ref|XP_004051658.1| PREDICTED: RNA-binding protein 4B isoform 2 [Gorilla gorilla
gorilla]
gi|441607717|ref|XP_004087894.1| PREDICTED: RNA-binding protein 4B isoform 2 [Nomascus leucogenys]
Length = 143
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|26350443|dbj|BAC38861.1| unnamed protein product [Mus musculus]
Length = 301
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|58865526|ref|NP_001011979.1| TAR DNA binding protein [Rattus norvegicus]
gi|53734262|gb|AAH83752.1| Tardbp protein [Rattus norvegicus]
gi|149024637|gb|EDL81134.1| rCG31562, isoform CRA_c [Rattus norvegicus]
Length = 285
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|56682933|ref|NP_001008546.1| TAR DNA-binding protein 43 isoform 4 [Mus musculus]
gi|33086854|gb|AAP92690.1| TARDBP S8 [Mus musculus]
Length = 302
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|148682889|gb|EDL14836.1| mCG16669, isoform CRA_g [Mus musculus]
Length = 288
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|354496958|ref|XP_003510590.1| PREDICTED: TAR DNA-binding protein 43-like isoform 3 [Cricetulus
griseus]
Length = 302
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|350015551|dbj|GAA42894.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Clonorchis
sinensis]
Length = 292
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 44/132 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD S RG GF+TF A SV+ + H+L G V RA P+E+
Sbjct: 46 KDPRSNKSRGFGFVTFKEAASVDKAQANRPHKLDGKEVDSKRAMPREE------------ 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
++ +AA+ KKIFVG L ++ T +DL Y
Sbjct: 94 --------TSPEVHAAV-----------------------KKIFVGGLKKDVTNDDLAEY 122
Query: 122 FSRFGRILDVYV 133
F ++G + D +
Sbjct: 123 FGQYGTVTDAQI 134
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
G+S KK+FVG L + E LR Y+S++G I DV V K
Sbjct: 5 GDSKADQDKKLFVGGLNPKTNEESLRSYYSQWGEITDVVVMK 46
>gi|90074958|dbj|BAE87159.1| unnamed protein product [Macaca fascicularis]
Length = 298
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 190 SRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|301774739|ref|XP_002922789.1| PREDICTED: TAR DNA-binding protein 43-like [Ailuropoda melanoleuca]
Length = 302
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPF 226
>gi|148909135|gb|ABR17668.1| unknown [Picea sitchensis]
Length = 411
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 45/128 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+T+A ++ ++ D H L G TV + R P+ + +
Sbjct: 75 KDRLTGQPRGFGFVTYADPSVIDKVIQDKHILDGKTVEIKRTIPRGNSSK---------- 124
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
AP KK+FVG +P T ++ + YF
Sbjct: 125 -----------------APKT------------------KKVFVGGIPTSITEDEFKDYF 149
Query: 123 SRFGRILD 130
S+FG++++
Sbjct: 150 SKFGKVVE 157
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATPKE 48
+D+ + RG GFITF + +VE ++ ELGG V + +A PK+
Sbjct: 162 QDRNTGRSRGFGFITFETEQAVEEIISQGRMLELGGKQVEIKKAEPKK 209
>gi|356551592|ref|XP_003544158.1| PREDICTED: uncharacterized protein LOC100795907 [Glycine max]
Length = 479
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 32/131 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ F+ E ++ + H + G V +A P++D
Sbjct: 39 KDRTTGRARGFGFVVFSDPAIAEIVIKEKHNIDGRMVEAKKAVPRDDQ------------ 86
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ + +++ PG GR +KIFVG L T D ++YF
Sbjct: 87 -----------NILSRNSGSIHGSPGP--GRT-------RKIFVGGLASTVTESDFKKYF 126
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 127 DQFGTITDVVV 137
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S ++V+ +++ T HEL G V V RA PKE P R GGY
Sbjct: 140 DHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPS-RTPLGGY 198
>gi|294460252|gb|ADE75708.1| unknown [Picea sitchensis]
Length = 396
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 37/131 (28%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ F + ++ + H + G V R P+ D+ + V R S+
Sbjct: 39 KDRTTGRARGFGFVVFGDPSVADRVIQEKHTIDGRAVEAKRVVPR-DEQQNVQRTSN--- 94
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ P KKIFVG L T +D R+YF
Sbjct: 95 ---------------MAGPRT------------------KKIFVGGLAPTVTEDDFRKYF 121
Query: 123 SRFGRILDVYV 133
+FG I DV V
Sbjct: 122 EQFGNITDVVV 132
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ HRG GFIT+ S D+V+ ++ T H+L TV V RA PK+
Sbjct: 135 DHTTQRHRGFGFITYDSEDAVDKVLQQTFHQLKEKTVEVKRAIPKD 180
>gi|410919809|ref|XP_003973376.1| PREDICTED: TAR DNA-binding protein 43-like [Takifugu rubripes]
Length = 399
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T +DLR++F ++G + DV++PK F
Sbjct: 192 RKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPF 227
>gi|432864812|ref|XP_004070429.1| PREDICTED: TAR DNA-binding protein 43-like isoform 2 [Oryzias
latipes]
Length = 396
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+KIFVGR ++ T ++LR+YF ++G + DV++PK F
Sbjct: 192 RKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPF 227
>gi|410966016|ref|XP_003989534.1| PREDICTED: TAR DNA-binding protein 43 [Felis catus]
Length = 414
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKPF 226
>gi|380024820|ref|XP_003696188.1| PREDICTED: RNA-binding protein 4.1-like, partial [Apis florea]
Length = 385
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLC 143
S+Q KIFVGRLP+ ++LR+ F RFG + + V R+ F H+
Sbjct: 4 SNQPRKTKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMA 51
>gi|345321114|ref|XP_003430384.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
gi|345321116|ref|XP_003430385.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
gi|345321118|ref|XP_003430386.1| PREDICTED: RNA-binding protein 4B-like isoform 3 [Ornithorhynchus
anatinus]
Length = 143
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|326926668|ref|XP_003209520.1| PREDICTED: RNA-binding protein 4B-like [Meleagris gallopavo]
Length = 154
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|257222468|gb|ACV52544.1| TDP-43 variant 3 [Mus musculus]
Length = 295
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|400601150|gb|EJP68793.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 522
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF A +V +MV H L G + RA P+++
Sbjct: 149 RDSNTGRSRGFGFLTFKDAKTVNIVMVKEHYLDGKIIDPKRAIPRDE------------- 195
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + Q+ T ++ R +F
Sbjct: 196 -----------------------------------QEKTSKIFVGGVSQDTTDQEFRDFF 220
Query: 123 SRFGRILD 130
++FGR++D
Sbjct: 221 AQFGRVID 228
>gi|431906336|gb|ELK10533.1| TAR DNA-binding protein 43 [Pteropus alecto]
Length = 391
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++L+++F ++G ++DV++PK F
Sbjct: 168 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKPF 203
>gi|55562787|gb|AAH86338.1| Rbm4b protein [Rattus norvegicus]
gi|60334832|gb|AAH90633.1| Rbm4 protein [Mus musculus]
gi|148701114|gb|EDL33061.1| mCG8382, isoform CRA_b [Mus musculus]
gi|149061995|gb|EDM12418.1| rCG48334, isoform CRA_c [Rattus norvegicus]
gi|219841854|gb|AAI44951.1| Rbm4 protein [Mus musculus]
Length = 143
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|417396175|gb|JAA45121.1| Putative rna-binding protein lark [Desmodus rotundus]
Length = 143
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|307193686|gb|EFN76369.1| RNA-binding protein 14 [Harpegnathos saltator]
Length = 361
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLC 143
S+Q KIFVGRLP+ ++LR+ F RFG + + V R+ F H+
Sbjct: 4 SNQPRKTKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMA 51
>gi|119592079|gb|EAW71673.1| TAR DNA binding protein, isoform CRA_d [Homo sapiens]
Length = 298
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|449268445|gb|EMC79309.1| TAR DNA-binding protein 43, partial [Columba livia]
Length = 340
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 31/36 (86%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++L+++F+++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPF 226
>gi|355557536|gb|EHH14316.1| hypothetical protein EGK_00221 [Macaca mulatta]
Length = 270
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR +FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|322783676|gb|EFZ11014.1| hypothetical protein SINV_11528 [Solenopsis invicta]
Length = 402
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLC 143
KIFVGRLP+ E+LR+ F RFG + + V R+ F H+
Sbjct: 16 KIFVGRLPENCRNEELRQLFLRFGEVTECDVMNRYGFVHMA 56
>gi|307179084|gb|EFN67556.1| RNA-binding protein 14 [Camponotus floridanus]
Length = 435
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLC 143
S+Q KIFVGRLP+ ++LR+ F RFG + + V R+ F H+
Sbjct: 23 SNQPRKTKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMA 70
>gi|311771540|ref|NP_001185772.1| RNA-binding protein 4 isoform 2 [Homo sapiens]
gi|332249624|ref|XP_003273958.1| PREDICTED: RNA-binding protein 4 isoform 1 [Nomascus leucogenys]
gi|338712241|ref|XP_003362680.1| PREDICTED: RNA-binding protein 4 isoform 3 [Equus caballus]
gi|397517071|ref|XP_003828743.1| PREDICTED: RNA-binding protein 4 isoform 2 [Pan paniscus]
gi|426252102|ref|XP_004019757.1| PREDICTED: RNA-binding protein 4 isoform 2 [Ovis aries]
gi|426369347|ref|XP_004051654.1| PREDICTED: RNA-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426369349|ref|XP_004051655.1| PREDICTED: RNA-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
gi|441607708|ref|XP_003273960.2| PREDICTED: RNA-binding protein 4 isoform 3 [Nomascus leucogenys]
gi|40787678|gb|AAH64960.1| RBM4 protein [Homo sapiens]
gi|410222936|gb|JAA08687.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254456|gb|JAA15195.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295012|gb|JAA26106.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352749|gb|JAA42978.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 143
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|296083709|emb|CBI23698.3| unnamed protein product [Vitis vinifera]
Length = 388
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 15/83 (18%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
DQ ++ RG GF++F + D+V+ ++ T H+L G V V RA PK D P G + GY
Sbjct: 144 DQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVKRALPK--DANPGGGSRYQGY 201
Query: 63 GAYNAYISAATRYAALGAPTLYD 85
GA G PT YD
Sbjct: 202 GASG------------GNPTTYD 212
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 28/131 (21%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA ++ ++ + H + G TV RA +E+ + +
Sbjct: 39 RDKATGRPRGFGFVVFADPSILDRVLQEKHIIDGRTVEAKRALSREE------QQTSSRA 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G +N S G KKIFVG LP + E R+YF
Sbjct: 93 GNFN----------------------SARNSGGGGNVKTKKIFVGGLPPTLSEEGFRQYF 130
Query: 123 SRFGRILDVYV 133
FG + DV V
Sbjct: 131 EAFGHVTDVVV 141
>gi|66516797|ref|XP_397567.2| PREDICTED: hypothetical protein LOC409486 [Apis mellifera]
Length = 416
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLC 143
S+Q KIFVGRLP+ ++LR+ F RFG + + V R+ F H+
Sbjct: 4 SNQPRKTKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMA 51
>gi|383422057|gb|AFH34242.1| RNA-binding protein 4B [Macaca mulatta]
Length = 359
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|301784857|ref|XP_002927839.1| PREDICTED: RNA-binding protein 4B-like [Ailuropoda melanoleuca]
gi|281346283|gb|EFB21867.1| hypothetical protein PANDA_017683 [Ailuropoda melanoleuca]
Length = 359
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|116197887|ref|XP_001224755.1| hypothetical protein CHGG_07099 [Chaetomium globosum CBS 148.51]
gi|88178378|gb|EAQ85846.1| hypothetical protein CHGG_07099 [Chaetomium globosum CBS 148.51]
Length = 886
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 422 RDGATGRSRGFGFLTFKDPKTVNIVMVKEHYLDGKIIDPKRAIPRDE------------- 468
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QE T + R YF
Sbjct: 469 -----------------------------------QEKTSKIFVGGVSQETTDHEFREYF 493
Query: 123 SRFGRILD 130
++FGR++D
Sbjct: 494 AQFGRVVD 501
Score = 35.4 bits (80), Expect = 9.2, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 82 TLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
T DH +F GE++ +K+F+G L E T + LR YFS+FG +L+ V
Sbjct: 376 TTPDHGDNF---GENT----RKMFIGGLNWETTDQSLRDYFSQFGEVLECTV 420
>gi|57099639|ref|XP_533216.1| PREDICTED: RNA-binding protein 4B isoform 1 [Canis lupus
familiaris]
Length = 359
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|340728027|ref|XP_003402334.1| PREDICTED: hypothetical protein LOC100650942 [Bombus terrestris]
gi|350402761|ref|XP_003486593.1| PREDICTED: hypothetical protein LOC100743736 isoform 1 [Bombus
impatiens]
Length = 416
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLC 143
S+Q KIFVGRLP+ ++LR+ F RFG + + V R+ F H+
Sbjct: 4 SNQPRKTKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMA 51
>gi|89257474|gb|ABD64965.1| hypothetical protein 25.t00002 [Brassica oleracea]
Length = 445
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 35/131 (26%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA + E +++ H + G V +A P+ DD + +
Sbjct: 39 KDRSTGRARGFGFLVFADPNVAERVVLLRHVIDGKLVEAKKAVPR-DDHKSNSSLQGSSP 97
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G N+ KKIFVG L T + ++YF
Sbjct: 98 GPANS----------------------------------KKIFVGGLASSVTEAEFKKYF 123
Query: 123 SRFGRILDVYV 133
++FG I DV V
Sbjct: 124 AQFGTITDVVV 134
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPV-GRMSHGG 61
DQ ++ RG GFI++ S D+V+ ++ T HEL G V V A PK+ PV +M+ G
Sbjct: 137 DQRTQRPRGFGFISYESEDAVDRVLRRTFHELNGKMVEVKLAVPKD----PVRNQMNVNG 192
Query: 62 YGA 64
+G+
Sbjct: 193 FGS 195
>gi|351710885|gb|EHB13804.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 192
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 40 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 92
>gi|321475556|gb|EFX86518.1| hypothetical protein DAPPUDRAFT_44313 [Daphnia pulex]
Length = 195
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 44/127 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITFA A SV+ ++ V H L G + ATPK
Sbjct: 56 KDPLTQRSRGFGFITFAEASSVDRVLAVPAHTLDGKKIDPKHATPKNK------------ 103
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G+ S + KK+FVG + Q+ +A++++ Y
Sbjct: 104 ------------------------------GKATPSSKT-KKVFVGGVSQDTSADEVKAY 132
Query: 122 FSRFGRI 128
F++FGR+
Sbjct: 133 FNQFGRV 139
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF S D V+ + + H + V +A PKE
Sbjct: 144 MLMDQQTKRHRGFGFVTFESEDVVDRICEIHYHTIKNKKVECKKAQPKE 192
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
GR + K+FVG L + +A+ LR YF ++G I+DV V K
Sbjct: 13 GRSTPTDLPHNKLFVGGLSWQTSADKLREYFGQYGTIIDVQVLK 56
>gi|158259071|dbj|BAF85494.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|178056229|ref|NP_001116659.1| RNA-binding protein 4 [Sus scrofa]
gi|115394772|gb|ABI97180.1| RBM4 [Sus scrofa]
Length = 365
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFAHIEDKTAAEDAI----RNL 55
>gi|444510189|gb|ELV09524.1| RNA-binding protein 4B [Tupaia chinensis]
Length = 357
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|296218877|ref|XP_002755613.1| PREDICTED: RNA-binding protein 4 [Callithrix jacchus]
gi|403301167|ref|XP_003941270.1| PREDICTED: RNA-binding protein 4 [Saimiri boliviensis boliviensis]
Length = 364
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|149024638|gb|EDL81135.1| rCG31562, isoform CRA_d [Rattus norvegicus]
Length = 271
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TAE+L+++F ++G ++DV++PK F
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 226
>gi|34495359|gb|AAQ73500.1| zinc responsive protein ZD7 [Rattus norvegicus]
Length = 357
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|93277122|ref|NP_002887.2| RNA-binding protein 4 isoform 1 [Homo sapiens]
gi|350539417|ref|NP_001233570.1| RNA-binding protein 4 [Pan troglodytes]
gi|332249626|ref|XP_003273959.1| PREDICTED: RNA-binding protein 4 isoform 2 [Nomascus leucogenys]
gi|397517069|ref|XP_003828742.1| PREDICTED: RNA-binding protein 4 isoform 1 [Pan paniscus]
gi|402892712|ref|XP_003909553.1| PREDICTED: RNA-binding protein 4 [Papio anubis]
gi|426369345|ref|XP_004051653.1| PREDICTED: RNA-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|62511089|sp|Q9BWF3.1|RBM4_HUMAN RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=hLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|75077302|sp|Q4R979.1|RBM4_MACFA RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4
gi|12653083|gb|AAH00307.1| RNA binding motif protein 4 [Homo sapiens]
gi|21618467|gb|AAH32735.1| RNA binding motif protein 4 [Homo sapiens]
gi|67967719|dbj|BAE00342.1| unnamed protein product [Macaca fascicularis]
gi|167774193|gb|ABZ92531.1| RNA binding motif protein 4 [synthetic construct]
gi|193783581|dbj|BAG53492.1| unnamed protein product [Homo sapiens]
gi|261859218|dbj|BAI46131.1| RNA binding motif protein 14 [synthetic construct]
gi|343958742|dbj|BAK63226.1| RNA binding motif protein 4 [Pan troglodytes]
gi|355566266|gb|EHH22645.1| RNA-binding motif protein 4 [Macaca mulatta]
gi|380784029|gb|AFE63890.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|383409025|gb|AFH27726.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|384942564|gb|AFI34887.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|410222926|gb|JAA08682.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222932|gb|JAA08685.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222940|gb|JAA08689.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254448|gb|JAA15191.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254452|gb|JAA15193.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295006|gb|JAA26103.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352741|gb|JAA42974.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352747|gb|JAA42977.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352751|gb|JAA42979.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352753|gb|JAA42980.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 364
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|432091076|gb|ELK24288.1| RNA-binding protein 4B [Myotis davidii]
Length = 357
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|348565067|ref|XP_003468325.1| PREDICTED: RNA-binding protein 4-like [Cavia porcellus]
Length = 365
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|291385477|ref|XP_002709280.1| PREDICTED: RNA binding motif protein 4B-like [Oryctolagus
cuniculus]
Length = 365
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|13899354|ref|NP_113680.1| RNA-binding protein 4B [Homo sapiens]
gi|109105261|ref|XP_001109453.1| PREDICTED: RNA-binding protein 4B-like [Macaca mulatta]
gi|114638751|ref|XP_508578.2| PREDICTED: RNA-binding protein 4B isoform 2 [Pan troglodytes]
gi|297688065|ref|XP_002821512.1| PREDICTED: RNA-binding protein 4B [Pongo abelii]
gi|397517079|ref|XP_003828747.1| PREDICTED: RNA-binding protein 4B [Pan paniscus]
gi|402892714|ref|XP_003909554.1| PREDICTED: RNA-binding protein 4B [Papio anubis]
gi|426369353|ref|XP_004051657.1| PREDICTED: RNA-binding protein 4B isoform 1 [Gorilla gorilla
gorilla]
gi|62511129|sp|Q9BQ04.1|RBM4B_HUMAN RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|13097558|gb|AAH03503.1| RNA binding motif protein 4B [Homo sapiens]
gi|13436323|gb|AAH04951.1| RNA binding motif protein 4B [Homo sapiens]
gi|119594964|gb|EAW74558.1| RNA binding motif protein 4B [Homo sapiens]
gi|193787792|dbj|BAG52995.1| unnamed protein product [Homo sapiens]
gi|208967358|dbj|BAG73693.1| RNA binding motif protein 4B [synthetic construct]
gi|325464201|gb|ADZ15871.1| RNA binding motif protein 4B [synthetic construct]
gi|355566265|gb|EHH22644.1| RNA-binding motif protein 4B [Macaca mulatta]
gi|355751922|gb|EHH56042.1| RNA-binding motif protein 4B [Macaca fascicularis]
Length = 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|410222930|gb|JAA08684.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|383852950|ref|XP_003701988.1| PREDICTED: uncharacterized protein LOC100875854 [Megachile
rotundata]
Length = 416
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLC 143
S+Q KIFVGRLP+ ++LR+ F RFG + + V R+ F H+
Sbjct: 4 SNQPRKTKIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMA 51
>gi|114052178|ref|NP_001039393.1| RNA-binding protein 4B [Bos taurus]
gi|86438058|gb|AAI12498.1| RNA binding motif protein 4B [Bos taurus]
gi|296471585|tpg|DAA13700.1| TPA: RNA binding motif protein 4B [Bos taurus]
Length = 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|403301169|ref|XP_003941271.1| PREDICTED: RNA-binding protein 4B [Saimiri boliviensis boliviensis]
Length = 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|395851691|ref|XP_003798386.1| PREDICTED: RNA-binding protein 4 [Otolemur garnettii]
Length = 365
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|332249630|ref|XP_003273961.1| PREDICTED: RNA-binding protein 4B isoform 1 [Nomascus leucogenys]
Length = 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|126723790|ref|NP_001075548.1| RNA-binding protein 4 [Oryctolagus cuniculus]
gi|62511088|sp|Q9BDY9.1|RBM4_RABIT RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
AltName: Full=RNA-binding motif protein 4
gi|13182931|gb|AAK14991.1|AF233063_1 RNA-binding protein lark [Oryctolagus cuniculus]
Length = 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|73982920|ref|XP_852303.1| PREDICTED: RNA-binding protein 4 isoform 1 [Canis lupus familiaris]
gi|301784859|ref|XP_002927840.1| PREDICTED: RNA-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
gi|301784861|ref|XP_002927841.1| PREDICTED: RNA-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
gi|410974610|ref|XP_003993736.1| PREDICTED: RNA-binding protein 4 [Felis catus]
gi|281346284|gb|EFB21868.1| hypothetical protein PANDA_017684 [Ailuropoda melanoleuca]
Length = 365
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|354496140|ref|XP_003510185.1| PREDICTED: RNA-binding protein 4 [Cricetulus griseus]
gi|344250268|gb|EGW06372.1| RNA-binding protein 4 [Cricetulus griseus]
Length = 360
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|431910216|gb|ELK13289.1| RNA-binding protein 4B [Pteropus alecto]
Length = 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|380817026|gb|AFE80387.1| RNA-binding protein 4B [Macaca mulatta]
gi|384949730|gb|AFI38470.1| RNA-binding protein 4B [Macaca mulatta]
gi|410254450|gb|JAA15192.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410295008|gb|JAA26104.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410352743|gb|JAA42975.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|348565071|ref|XP_003468327.1| PREDICTED: RNA-binding protein 4B-like [Cavia porcellus]
Length = 358
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|149725614|ref|XP_001496788.1| PREDICTED: RNA-binding protein 4 isoform 1 [Equus caballus]
gi|338712238|ref|XP_003362679.1| PREDICTED: RNA-binding protein 4 isoform 2 [Equus caballus]
Length = 361
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|149491652|ref|XP_001512914.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
Length = 365
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|120577684|gb|AAI30257.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|86262144|ref|NP_033058.2| RNA-binding protein 4 [Mus musculus]
gi|62511057|sp|Q8C7Q4.1|RBM4_MOUSE RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=mLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|26340398|dbj|BAC33862.1| unnamed protein product [Mus musculus]
gi|148701113|gb|EDL33060.1| mCG8382, isoform CRA_a [Mus musculus]
gi|219520483|gb|AAI44950.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|431910217|gb|ELK13290.1| RNA-binding protein 4 [Pteropus alecto]
Length = 365
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|410974612|ref|XP_003993737.1| PREDICTED: RNA-binding protein 4B [Felis catus]
Length = 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|149725616|ref|XP_001496839.1| PREDICTED: RNA-binding protein 4B-like [Equus caballus]
Length = 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|178056236|ref|NP_001116660.1| RNA-binding protein 4B [Sus scrofa]
gi|122131878|sp|Q06AT9.1|RBM4B_PIG RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|115394774|gb|ABI97181.1| RBM30 [Sus scrofa]
Length = 359
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|426369357|ref|XP_004051659.1| PREDICTED: RNA-binding protein 4B isoform 3 [Gorilla gorilla
gorilla]
Length = 151
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|55926188|ref|NP_001007015.2| RNA-binding protein 4B [Rattus norvegicus]
gi|62510948|sp|Q64LC9.2|RBM4B_RAT RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30;
AltName: Full=Zinc-responsive protein ZD7
gi|55562771|gb|AAH86416.1| RNA binding motif protein 4B [Rattus norvegicus]
gi|149061999|gb|EDM12422.1| rCG48244, isoform CRA_a [Rattus norvegicus]
gi|149062000|gb|EDM12423.1| rCG48244, isoform CRA_a [Rattus norvegicus]
Length = 357
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|403222919|dbj|BAM41050.1| DAZ-associated protein 1 [Theileria orientalis strain Shintoku]
Length = 395
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+R K+FVGR+ + T + LR YFS+FG ++DVY+P+
Sbjct: 308 ERNAPKLFVGRIGYDTTVQTLRSYFSQFGDVVDVYIPR 345
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
+IF+ R+P +AT +DL YF +FG + D Y PK+ + L
Sbjct: 115 RIFITRIPFDATKDDLEEYFKKFGTVYDAYCPKQSNYSTL 154
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 7 SKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAY 65
S ++G GFI+F S ++++ + H + G V+VDRAT G H G GA
Sbjct: 152 STLNKGFGFISFDSEETIQKVFETSPHVIMGREVIVDRAT---------GTKFHTGAGAG 202
Query: 66 NAYISAA 72
NA SAA
Sbjct: 203 NANGSAA 209
>gi|27754120|ref|NP_079993.2| RNA-binding protein 4B [Mus musculus]
gi|62511125|sp|Q8VE92.1|RBM4B_MOUSE RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|18044496|gb|AAH19488.1| RNA binding motif protein 4B [Mus musculus]
gi|148701119|gb|EDL33066.1| mCG8380, isoform CRA_a [Mus musculus]
gi|148701120|gb|EDL33067.1| mCG8380, isoform CRA_a [Mus musculus]
Length = 357
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|432091077|gb|ELK24289.1| RNA-binding protein 4 [Myotis davidii]
Length = 382
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|116004239|ref|NP_001070478.1| RNA-binding protein 4 [Bos taurus]
gi|91207336|sp|Q3MHX3.1|RBM4_BOVIN RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4; AltName: Full=RNA-binding motif protein
4a
gi|75775098|gb|AAI04571.1| RNA binding motif protein 4 [Bos taurus]
gi|146231708|gb|ABQ12929.1| RNA binding motif protein 4 [Bos taurus]
gi|296471486|tpg|DAA13601.1| TPA: RNA-binding protein 4 [Bos taurus]
gi|440899389|gb|ELR50692.1| RNA-binding protein 4 [Bos grunniens mutus]
Length = 362
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|395544458|ref|XP_003774127.1| PREDICTED: RNA-binding protein 4 [Sarcophilus harrisii]
Length = 364
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|354496142|ref|XP_003510186.1| PREDICTED: RNA-binding protein 4B [Cricetulus griseus]
gi|344250269|gb|EGW06373.1| RNA-binding protein 4B [Cricetulus griseus]
Length = 357
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|449447863|ref|XP_004141686.1| PREDICTED: uncharacterized protein LOC101220676 [Cucumis sativus]
gi|449525968|ref|XP_004169988.1| PREDICTED: uncharacterized LOC101220676 [Cucumis sativus]
Length = 700
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47
D +K RG GFITF + DSVEN+ HELGG V + +A PK
Sbjct: 546 DYKTKRSRGFGFITFENEDSVENIFSGDRIHELGGKQVEIKKAVPK 591
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 43/120 (35%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+TF + ++ H + G V V R P+ D N +
Sbjct: 464 RGFGFVTFCDPAIADMVLKIDHIIDGRAVEVKRTVPRAD---------------MNDKMV 508
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
+ T KKIFVG +P T E+ + YFS FGRI++
Sbjct: 509 SRT----------------------------KKIFVGGIPPGLTEEEFKDYFSSFGRIIE 540
>gi|26352530|dbj|BAC39895.1| unnamed protein product [Mus musculus]
gi|74183052|dbj|BAE20479.1| unnamed protein product [Mus musculus]
gi|74186507|dbj|BAE34743.1| unnamed protein product [Mus musculus]
Length = 168
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|432864810|ref|XP_004070428.1| PREDICTED: TAR DNA-binding protein 43-like isoform 1 [Oryzias
latipes]
Length = 299
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+KIFVGR ++ T ++LR+YF ++G + DV++PK F
Sbjct: 192 RKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPF 227
>gi|126338772|ref|XP_001364800.1| PREDICTED: RNA-binding protein 4B-like [Monodelphis domestica]
Length = 365
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRALFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|282165770|ref|NP_001163955.1| RNA binding motif protein 4 [Rattus norvegicus]
gi|149061994|gb|EDM12417.1| rCG48334, isoform CRA_b [Rattus norvegicus]
Length = 365
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|358252904|dbj|GAA50476.1| TAR DNA-binding protein 43 [Clonorchis sinensis]
Length = 507
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +KI VG LP+ A+ LR++F ++G ++DV++PK F
Sbjct: 235 QEVSRKIHVGNLPESIGADALRQHFLQYGLVIDVFIPKPF 274
>gi|197098970|ref|NP_001126757.1| RNA-binding protein 4 [Pongo abelii]
gi|55732548|emb|CAH92974.1| hypothetical protein [Pongo abelii]
Length = 170
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|344295811|ref|XP_003419604.1| PREDICTED: RNA-binding protein 4B-like [Loxodonta africana]
Length = 359
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|426252106|ref|XP_004019759.1| PREDICTED: RNA-binding protein 4B isoform 2 [Ovis aries]
Length = 147
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|118344010|ref|NP_001071830.1| Tardbp protein [Ciona intestinalis]
gi|70571316|dbj|BAE06721.1| Ci-Tardbp [Ciona intestinalis]
Length = 440
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+ KIFVGR+ ++ T +++R+YF +FG + DVY+P F
Sbjct: 221 VSSKIFVGRITEKMTKDEIRQYFEQFGDVDDVYIPIPF 258
>gi|395851687|ref|XP_003798384.1| PREDICTED: RNA-binding protein 4B [Otolemur garnettii]
Length = 359
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|321474203|gb|EFX85168.1| hypothetical protein DAPPUDRAFT_98603 [Daphnia pulex]
Length = 250
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKV 155
KIFVGRLP +A EDLR F ++G I + V RF F H+ ++ + +
Sbjct: 7 KIFVGRLPLDAKQEDLRALFEKYGVITECDVLNRFGFVHMKSEEMAKRAIAAL 59
>gi|193688245|ref|XP_001946219.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1, A2/B1
homolog [Acyrthosiphon pisum]
Length = 350
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GFIT+A+A V++ H++ G TV RA PK D
Sbjct: 41 KDPQTKRSRGFGFITYAAAHMVDDAQGARPHKIDGRTVEPKRAVPKTD------------ 88
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G+ E+ + KK+FVG L T EDL+ Y
Sbjct: 89 -----------------------------IGKPEAGATV-KKLFVGLLNDSITEEDLKEY 118
Query: 122 FSRFGRI 128
FS +G +
Sbjct: 119 FSPYGNV 125
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+FVG L + T E+L++YF ++G I+DV V K
Sbjct: 8 RKLFVGGLDYKTTDENLKKYFEQWGEIMDVVVMK 41
>gi|413954080|gb|AFW86729.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 270
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 48/136 (35%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+TF+ ++ ++ D H + G TV V R PKE +S
Sbjct: 3 RGFGFVTFSDPSVLDRVLEDEHVIDGRTVEVKRTVPKE--------------------LS 42
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
+ D P + KKIFVG +P T + L+ +FS +G++++
Sbjct: 43 SK------------DGPKT------------KKIFVGGIPPSLTEDKLKEHFSSYGKVVE 78
Query: 131 VYVPKRFWFCHLCGRS 146
+ H GRS
Sbjct: 79 ----HQIMLDHSTGRS 90
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED---DFRPVGRMS 58
D + RG GF+TF S D+VE +M + H+LGG V + +A PK+ D GR S
Sbjct: 84 DHSTGRSRGFGFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKKPGAGDSSSNGRHS 143
Query: 59 HGG 61
GG
Sbjct: 144 RGG 146
>gi|350645456|emb|CCD59808.1| tar DNA-binding protein, putative [Schistosoma mansoni]
Length = 344
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+ VG + + TA LR YFS+FG +LDV++PK F
Sbjct: 189 QEVSRKVHVGGITESITATVLRDYFSQFGAVLDVFIPKPF 228
>gi|397642327|gb|EJK75167.1| hypothetical protein THAOC_03118, partial [Thalassiosira oceanica]
Length = 452
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 47/167 (28%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMS 58
+P ++G+ RG GF+T ++ + E+ + +D +L G T+ V+ + P+ + P R S
Sbjct: 50 LPMERGTSRPRGFGFVTLSTRQAAEDAIAKMDQSQLDGRTIRVNESRPRGEG--PGARRS 107
Query: 59 H------GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQE 112
+ GGYGA+N R K++VG L +
Sbjct: 108 NEPGTGPGGYGAFNP-----------------------------QGREDVKLYVGNLSFD 138
Query: 113 ATAEDLRRYFSRFGRILDVYV--------PKRFWFCHLCGRSCSRSC 151
E +R F ++G + D ++ P+ F F + + +C
Sbjct: 139 TNEEAVRSMFEQYGTVSDCFLPSDRDTGRPRGFAFVTMPAKEAETAC 185
>gi|340914891|gb|EGS18232.1| hypothetical protein CTHT_0062490 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 700
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 54/159 (33%), Gaps = 56/159 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF V +MV H L G + RA P+++
Sbjct: 258 RDSATGRSRGFGFLTFKDPKVVNIVMVKEHYLDGKIIDPKRAIPRDE------------- 304
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + E T + R YF
Sbjct: 305 -----------------------------------QEKTSKIFVGGVSPETTDHEFREYF 329
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
S+FGR++D + P+ F F + +C +
Sbjct: 330 SQFGRVVDATLMMDKDTGRPRGFGFVTFESEAGVEACLN 368
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
I KK+F+G L E T E LR YFS+FG +++ V
Sbjct: 223 IAKKMFIGGLNWETTDESLRNYFSQFGEVVECTV 256
>gi|426252104|ref|XP_004019758.1| PREDICTED: RNA-binding protein 4B isoform 1 [Ovis aries]
Length = 365
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|296218879|ref|XP_002755663.1| PREDICTED: RNA-binding protein 4B [Callithrix jacchus]
Length = 372
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|426252100|ref|XP_004019756.1| PREDICTED: RNA-binding protein 4 isoform 1 [Ovis aries]
Length = 361
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|331284184|ref|NP_001193585.1| RNA-binding protein Musashi homolog 2 [Bos taurus]
Length = 354
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 15/132 (11%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TFA SV+ ++ HEL T+ A P+ R G
Sbjct: 50 RDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR--------RAQPKG 101
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
+ A P + P R R KKIFVG L ED+++Y
Sbjct: 102 TFLTQGSNPRLLHWQADSLPLSHQDP-----RHAMVTRT-KKIFVGGLSANTVVEDVKQY 155
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 156 FEQFGKVEDAML 167
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GF+TF + D VE + + HE+ V +A PKE F P
Sbjct: 170 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 220
>gi|62897067|dbj|BAD96474.1| TAR DNA binding protein variant [Homo sapiens]
Length = 414
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR + T ++LR +FS++G ++DV++PK F
Sbjct: 191 RKVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF 226
>gi|350596610|ref|XP_003361409.2| PREDICTED: TAR DNA-binding protein 43-like, partial [Sus scrofa]
Length = 259
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++L+++F ++G ++DV++PK F
Sbjct: 111 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKPF 146
>gi|71027799|ref|XP_763543.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350496|gb|EAN31260.1| nucleic acid binding factor, putative [Theileria parva]
Length = 421
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 80 APTLYDHPGSFYGRGESS--QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
AP Y Y G + R K+FVGR+ E + LR YFS+FG ++DVY+PK
Sbjct: 314 APKTYSDGSRTYSNGSRNGRDRSIPKLFVGRIAFETSVHSLRTYFSQFGEVIDVYIPK 371
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
+IF+ R+ EAT +DL YF +FG + D Y P++ + L
Sbjct: 117 ANRIFITRIAFEATKDDLEDYFKKFGTVYDAYCPRQNNYSGL 158
>gi|391339574|ref|XP_003744123.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Metaseiulus occidentalis]
Length = 334
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 44/131 (33%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D SK RG GF+T+A + V+ M H + TV RA P+E
Sbjct: 57 DPYSKRSRGFGFVTYADSQMVDQAMAQRPHIIDNRTVEPKRAIPREQS------------ 104
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G+++ + KK+FVG L E AEDLR YF
Sbjct: 105 ------------------------------SGDTNMSV-KKLFVGGLSTETEAEDLRNYF 133
Query: 123 SRFGRILDVYV 133
++G I +V +
Sbjct: 134 GKYGSIEEVII 144
>gi|42542491|gb|AAH66430.1| Tardbpl protein [Danio rerio]
Length = 298
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G + DV++PK F
Sbjct: 192 RKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPF 227
>gi|363746234|ref|XP_003643577.1| PREDICTED: RNA-binding protein 4B-like, partial [Gallus gallus]
Length = 242
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|397517075|ref|XP_003828745.1| PREDICTED: RNA-binding protein 4 isoform 4 [Pan paniscus]
gi|18088917|gb|AAH21120.1| RBM4 protein [Homo sapiens]
gi|50949475|emb|CAH10593.1| hypothetical protein [Homo sapiens]
Length = 177
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|38198639|ref|NP_938178.1| TAR DNA-binding protein 43 [Danio rerio]
gi|27882272|gb|AAH44405.1| TAR DNA binding protein, like [Danio rerio]
gi|182888816|gb|AAI64253.1| Tardbpl protein [Danio rerio]
Length = 303
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++F ++G + DV++PK F
Sbjct: 197 RKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPF 232
>gi|356571134|ref|XP_003553735.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2 homolog
2-like [Glycine max]
Length = 374
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 42/128 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT+A V+ ++ DTH + G V + R P+
Sbjct: 77 KDRKTGQPRGFGFITYADPSVVDTVIEDTHIINGKQVEIKRTIPR--------------- 121
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A G+ S KKIFVG +P T ++ R +F
Sbjct: 122 -------------GAAGS--------------NSKDFRTKKIFVGGIPSTVTEDEFRDFF 154
Query: 123 SRFGRILD 130
+R+G + D
Sbjct: 155 TRYGEVKD 162
>gi|313230121|emb|CBY07825.1| unnamed protein product [Oikopleura dioica]
Length = 422
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+KIF+G LP EA E L+ +FSRFG I+D VPK
Sbjct: 19 RKIFIGNLPYEADEEMLKNHFSRFGEIVDCVVPK 52
>gi|89257506|gb|ABD64996.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing
protein [Brassica oleracea]
Length = 587
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 31/131 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ F+ E ++ H + G V +A P++D
Sbjct: 39 KDRATGRARGFGFLVFSDPIVAERVVFLRHVIDGKLVEAKKAVPRDD------------- 85
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ ++ + + G+P G S KKIFVG L T + ++YF
Sbjct: 86 ---HVVLNKSYNTSLQGSP----------GPANS-----KKIFVGGLASSVTEAEFKKYF 127
Query: 123 SRFGRILDVYV 133
++FG I DV V
Sbjct: 128 AQFGVITDVVV 138
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPV-GRMSHGG 61
D ++ RG GFI+F S D+V+ ++ T HEL G V V A PKE P+ +M+
Sbjct: 141 DHRTQRPRGFGFISFESEDAVDKVLQRTFHELNGKMVEVKLAVPKEMALNPIRNQMNVNS 200
Query: 62 YGA 64
+G+
Sbjct: 201 FGS 203
>gi|449670053|ref|XP_002164005.2| PREDICTED: uncharacterized protein LOC100200147 [Hydra
magnipapillata]
Length = 455
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKE-DDFRPVGRMSHGGYGAYNAYI 69
RG F+TF D+V+ ++D GG T+ D TP + + P Y A A +
Sbjct: 100 RGFAFVTFKYPDAVQ-AVIDQCSNGGHTL--DGKTPLQVRKYFPKAE-----YDAEKAAV 151
Query: 70 SAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL 129
+A+ A G+ + + + G E K+FVG + T +D+R+YFS FG+++
Sbjct: 152 AASNGVGANGSNSQFQYKGPMKVNPE------LKVFVGGIGIGTTEDDVRKYFSTFGKVV 205
Query: 130 DVYVP 134
V +P
Sbjct: 206 QVDMP 210
>gi|345494041|ref|XP_001606007.2| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Nasonia
vitripennis]
Length = 367
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITFA SV+ ++ THEL G + A P+ + V R
Sbjct: 55 KDPTTRRSRGFGFITFADPASVDKVLAQGTHELDGKKIDPKVAFPRRTHPKMVTRT---- 110
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED++ Y
Sbjct: 111 ----------------------------------------KKIFVGGLSAPTTLEDVKNY 130
Query: 122 FSRFGRILDVYV 133
F +FG I D +
Sbjct: 131 FEQFGPIEDAML 142
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRP-VGRMSHGG 61
D+ + HRG GF+TF S D V+ + + HE+ V +A PKE + + G
Sbjct: 145 DKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAAG 204
Query: 62 YGAYNAYI 69
GAY+ ++
Sbjct: 205 RGAYDNFM 212
>gi|147791134|emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera]
Length = 464
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 28/131 (21%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA ++ ++ + H + G TV RA +E+ + +
Sbjct: 39 RDKATGRPRGFGFVVFADPSILDRVLQEKHIIDGRTVEAKRALSREE------QQTSSRA 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G +N+ ++ G KKIFVG LP + E R+YF
Sbjct: 93 GNFNSARNS----------------------GGGGNVKTKKIFVGGLPPTLSEEGFRQYF 130
Query: 123 SRFGRILDVYV 133
FG + DV V
Sbjct: 131 EAFGHVTDVVV 141
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GF++F + D+V+ ++ T H+L G V V RA PK+
Sbjct: 144 DQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVKRALPKD 189
>gi|363746805|ref|XP_003643805.1| PREDICTED: RNA-binding protein 4-like, partial [Gallus gallus]
Length = 123
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|351713714|gb|EHB16633.1| TAR DNA-binding protein 43 [Heterocephalus glaber]
Length = 414
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ TA++LR++FS++G + DV++P F
Sbjct: 191 RKVFVGRCTEDMTADELRQFFSQYGEVEDVFIPIPF 226
>gi|307136289|gb|ADN34116.1| heterogeneous nuclear ribonucleoprotein a1 [Cucumis melo subsp.
melo]
Length = 699
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED--DFRPVGRMSH 59
D +K RG GFITF + DSV+N+ HELGG V + +A PK+ DF +
Sbjct: 544 DYKTKRSRGFGFITFENEDSVDNIFSGDRIHELGGKQVEIKKAVPKKVAYDFNSNSGHTS 603
Query: 60 GGYGAY 65
GY Y
Sbjct: 604 SGYDMY 609
>gi|209154888|gb|ACI33676.1| TAR DNA-binding protein 43 [Salmo salar]
Length = 399
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+KIFVGR ++ T ++LR++F ++G + DV++PK F
Sbjct: 192 RKIFVGRCTEDITTDELRQFFMQYGEVTDVFIPKPF 227
>gi|442633006|ref|NP_001261979.1| RNA-binding protein 6, isoform G [Drosophila melanogaster]
gi|440215929|gb|AGB94672.1| RNA-binding protein 6, isoform G [Drosophila melanogaster]
Length = 371
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 62 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRR------------- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KKIFVG L T ED++ Y
Sbjct: 109 -----AHPKMVTRT--------------------------KKIFVGGLSAPTTLEDVKSY 137
Query: 122 FSRFGRILDVYV 133
F +FG I D +
Sbjct: 138 FEQFGPIEDAML 149
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D V+ + + HE+ V +A PKE
Sbjct: 152 DKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 197
>gi|225433229|ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257917 [Vitis vinifera]
Length = 464
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 36/148 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ FA ++ ++ + H + G TV RA +E+ + +
Sbjct: 39 RDKATGRPRGFGFVVFADPSILDRVLQEKHIIDGRTVEAKRALSREE------QQTSSRA 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G +N+ ++ G KKIFVG LP + E R+YF
Sbjct: 93 GNFNSARNS----------------------GGGGNVKTKKIFVGGLPPTLSEEGFRQYF 130
Query: 123 SRFGRILDVYV--------PKRFWFCHL 142
FG + DV V P+ F F
Sbjct: 131 EAFGHVTDVVVMYDQSTQRPRGFGFVSF 158
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GF++F + D+V+ ++ T H+L G V V RA PK+
Sbjct: 144 DQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVKRALPKD 189
>gi|224613250|gb|ACN60204.1| TAR DNA-binding protein 43 [Salmo salar]
Length = 294
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ +A++LR++F ++G + DV++PK F
Sbjct: 80 RKVFVGRCTEDISADELRQFFMQYGEVTDVFIPKPF 115
>gi|194748703|ref|XP_001956784.1| GF24401 [Drosophila ananassae]
gi|190624066|gb|EDV39590.1| GF24401 [Drosophila ananassae]
Length = 370
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 63 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRR------------- 109
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KKIFVG L T ED++ Y
Sbjct: 110 -----AHPKMVTRT--------------------------KKIFVGGLSAPTTLEDVKSY 138
Query: 122 FSRFGRILDVYV 133
F +FG I D +
Sbjct: 139 FEQFGPIEDAML 150
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D V+ + + HE+ V +A PKE
Sbjct: 153 DKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 198
>gi|195016128|ref|XP_001984346.1| GH15068 [Drosophila grimshawi]
gi|193897828|gb|EDV96694.1| GH15068 [Drosophila grimshawi]
Length = 379
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 72 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRR------------- 118
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KKIFVG L T ED++ Y
Sbjct: 119 -----AHPKMVTRT--------------------------KKIFVGGLSAPTTLEDVKSY 147
Query: 122 FSRFGRILDVYV 133
F +FG I D +
Sbjct: 148 FEQFGPIEDAML 159
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D V+ + + HE+ V +A PKE
Sbjct: 162 DKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 207
>gi|449279129|gb|EMC86791.1| RNA-binding protein 4, partial [Columba livia]
Length = 250
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|195125567|ref|XP_002007249.1| GI12835 [Drosophila mojavensis]
gi|193918858|gb|EDW17725.1| GI12835 [Drosophila mojavensis]
Length = 383
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 76 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRR------------- 122
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KKIFVG L T ED++ Y
Sbjct: 123 -----AHPKMVTRT--------------------------KKIFVGGLSAPTTLEDVKSY 151
Query: 122 FSRFGRILDVYV 133
F +FG I D +
Sbjct: 152 FEQFGPIEDAML 163
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D V+ + + HE+ V +A PKE
Sbjct: 166 DKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 211
>gi|224164480|ref|XP_002196784.1| PREDICTED: RNA-binding protein 4B-like, partial [Taeniopygia
guttata]
Length = 333
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|149061996|gb|EDM12419.1| rCG48334, isoform CRA_d [Rattus norvegicus]
Length = 173
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|62484464|ref|NP_730245.2| RNA-binding protein 6, isoform A [Drosophila melanogaster]
gi|194872120|ref|XP_001972967.1| GG15829 [Drosophila erecta]
gi|195328324|ref|XP_002030866.1| GM24349 [Drosophila sechellia]
gi|195494905|ref|XP_002095039.1| GE22169 [Drosophila yakuba]
gi|75027590|sp|Q9VVE5.3|MSIR6_DROME RecName: Full=RNA-binding protein Musashi homolog Rbp6
gi|21483526|gb|AAM52738.1| RE25373p [Drosophila melanogaster]
gi|61678495|gb|AAF49366.3| RNA-binding protein 6, isoform A [Drosophila melanogaster]
gi|190654750|gb|EDV51993.1| GG15829 [Drosophila erecta]
gi|194119809|gb|EDW41852.1| GM24349 [Drosophila sechellia]
gi|194181140|gb|EDW94751.1| GE22169 [Drosophila yakuba]
Length = 369
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 62 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRR------------- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KKIFVG L T ED++ Y
Sbjct: 109 -----AHPKMVTRT--------------------------KKIFVGGLSAPTTLEDVKSY 137
Query: 122 FSRFGRILDVYV 133
F +FG I D +
Sbjct: 138 FEQFGPIEDAML 149
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D V+ + + HE+ V +A PKE
Sbjct: 152 DKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 197
>gi|125600879|gb|EAZ40455.1| hypothetical protein OsJ_24907 [Oryza sativa Japonica Group]
Length = 427
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
D ++ RG GFIT+ S D+V+ L + HEL G V V RA PKE P R GG
Sbjct: 97 DHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQSPGPAARSPAGG 155
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
+KIFVG L T + RRYF +FG I DV V
Sbjct: 63 RKIFVGGLASNVTEVEFRRYFEQFGVITDVVV 94
>gi|72057573|ref|XP_792521.1| PREDICTED: RNA-binding protein lark-like isoform 2
[Strongylocentrotus purpuratus]
Length = 247
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
+ KK+FVG LPQ T +DL+ F+ G++++ V K + F H+ + SK+ +
Sbjct: 1 MAKKLFVGNLPQGCTNDDLKTLFATIGQVVECDVLKNYGFVHMSTIEEALEAVSKLGGHR 60
Query: 160 WTAGCNRFSHTT 171
R H+T
Sbjct: 61 LYGNAIRVQHST 72
>gi|351710884|gb|EHB13803.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 318
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|256080325|ref|XP_002576432.1| tar DNA-binding protein [Schistosoma mansoni]
Length = 296
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+ VG + + TA LR YFS+FG +LDV++PK F
Sbjct: 189 QEVSRKVHVGGITESITATVLRDYFSQFGAVLDVFIPKPF 228
>gi|195442400|ref|XP_002068946.1| GK18043 [Drosophila willistoni]
gi|194165031|gb|EDW79932.1| GK18043 [Drosophila willistoni]
Length = 386
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 76 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRR------------- 122
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KKIFVG L T ED++ Y
Sbjct: 123 -----AHPKMVTRT--------------------------KKIFVGGLSAPTTLEDVKSY 151
Query: 122 FSRFGRILDVYV 133
F +FG I D +
Sbjct: 152 FEQFGPIEDAML 163
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D V+ + + HE+ V +A PKE
Sbjct: 166 DKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 211
>gi|209154032|gb|ACI33248.1| TAR DNA-binding protein 43 [Salmo salar]
Length = 405
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ +A++LR++F ++G + DV++PK F
Sbjct: 192 RKVFVGRCTEDLSADELRQFFMQYGEVTDVFIPKPF 227
>gi|410899428|ref|XP_003963199.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Takifugu rubripes]
Length = 291
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T++S D V+ M H++ G V RA +ED RP
Sbjct: 46 RDPNSKRSRGFGFVTYSSVDEVDLAMTARPHKVDGRVVEPKRAVSREDSNRP-------- 97
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +R Y
Sbjct: 98 ----GAHVTV------------------------------KKIFVGGIKEDTEESHIRDY 123
Query: 122 FSRFGRI 128
F RFG+I
Sbjct: 124 FERFGKI 130
>gi|346467163|gb|AEO33426.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ SV+ ++ + HEL G + A PK
Sbjct: 84 KDPSTRRSRGFGFVTFSDPASVDKVLANGPHELDGKKIDPKIAFPKR------------- 130
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KK+FVG L T ED++ Y
Sbjct: 131 -----AHPKMVTRT--------------------------KKVFVGGLSAPTTLEDVKNY 159
Query: 122 FSRFGRILDVYV 133
F +FGRI D +
Sbjct: 160 FQQFGRIEDAML 171
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D V+ + + HE+ V +A PKE
Sbjct: 174 DKQTNRHRGFGFVTFENEDVVDKVCEIHFHEINNKMVECKKAQPKE 219
>gi|332020797|gb|EGI61195.1| RNA-binding protein 14 [Acromyrmex echinatior]
Length = 383
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLC 143
KIFVGRLP+ ++LR+ F RFG + + V R+ F H+
Sbjct: 22 KIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMA 62
>gi|351697058|gb|EHA99976.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 187
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSR 157
K+F+G LP+EAT +++R F ++G+ L+ V K + F H+ + + + R
Sbjct: 3 KLFIGNLPREATGQEIRSLFEQYGKALEYDVIKNYGFVHMEDETAAEDAIHNLHR 57
>gi|219362753|ref|NP_001137092.1| uncharacterized protein LOC100217268 [Zea mays]
gi|194698334|gb|ACF83251.1| unknown [Zea mays]
gi|323388723|gb|ADX60166.1| SNF2 transcription factor [Zea mays]
gi|413925208|gb|AFW65140.1| hypothetical protein ZEAMMB73_790427 [Zea mays]
Length = 383
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 46/144 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT++ V+ ++ D H + G V + R PK
Sbjct: 58 KDRHTSQPRGFGFITYSDPAVVDKVIEDNHVINGKQVEIKRTIPK--------------- 102
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ S++ + KKIFVG LP T ++ + +F
Sbjct: 103 ---GSVQSSSKDFKT------------------------KKIFVGGLPSTLTEDEFKSFF 135
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
+R+G ++D + F H RS
Sbjct: 136 ARYGTVVD----HQIMFDHETKRS 155
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATPKEDDFRP 53
D +K RG GFI FAS V++L+ + + +L GS V + +A PK+ P
Sbjct: 149 DHETKRSRGFGFIVFASEQVVDDLLANGNMVDLAGSKVEIKKAEPKKSSNAP 200
>gi|194384258|dbj|BAG64902.1| unnamed protein product [Homo sapiens]
Length = 173
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
K+F+G LP+EAT +++R F ++G++L+ + K + F H+
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 42
>gi|311771542|ref|NP_001185773.1| RNA-binding protein 4 isoform 3 [Homo sapiens]
gi|397517073|ref|XP_003828744.1| PREDICTED: RNA-binding protein 4 isoform 3 [Pan paniscus]
gi|426369351|ref|XP_004051656.1| PREDICTED: RNA-binding protein 4 isoform 4 [Gorilla gorilla
gorilla]
gi|410222934|gb|JAA08686.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254454|gb|JAA15194.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295010|gb|JAA26105.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352745|gb|JAA42976.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 173
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
K+F+G LP+EAT +++R F ++G++L+ + K + F H+
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 42
>gi|223647646|gb|ACN10581.1| TAR DNA-binding protein 43 [Salmo salar]
Length = 406
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ +A++LR++F ++G + DV++PK F
Sbjct: 192 RKVFVGRCTEDISADELRQFFMQYGEVTDVFIPKPF 227
>gi|224161731|ref|XP_002338367.1| predicted protein [Populus trichocarpa]
gi|222872031|gb|EEF09162.1| predicted protein [Populus trichocarpa]
Length = 151
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 53/143 (37%), Gaps = 48/143 (33%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYG 63
D+ S RG GF+TFA + ++ + H + G V V R P+ED V R
Sbjct: 19 DRHSGRPRGFGFVTFADPVVADRVLEEDHVIDGRAVEVKRTVPREDMEVRVTRT------ 72
Query: 64 AYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFS 123
KKIFVG +P T ++L+ YFS
Sbjct: 73 --------------------------------------KKIFVGGIPPSLTEDELKEYFS 94
Query: 124 RFGRILDVYVPKRFWFCHLCGRS 146
+G I+D + H GRS
Sbjct: 95 VYGSIVD----HQIMLDHKTGRS 113
>gi|222824844|emb|CAM12246.2| RNA binding protein 4 [Danio rerio]
Length = 99
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRS 146
KIFVG L TAE++R FS++G+I + + K F F H+ +S
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKS 46
>gi|350402764|ref|XP_003486594.1| PREDICTED: hypothetical protein LOC100743736 isoform 2 [Bombus
impatiens]
Length = 382
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLC 143
KIFVGRLP+ ++LR+ F RFG + + V R+ F H+
Sbjct: 17 KIFVGRLPENCRNDELRQLFLRFGEVTECDVMNRYGFVHMA 57
>gi|214241|gb|AAA49742.1| ribonucleoprotein A1b [Xenopus laevis]
Length = 351
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T+ S D V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ + LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEDHLREY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|430813105|emb|CCJ29521.1| unnamed protein product [Pneumocystis jirovecii]
Length = 397
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 56/160 (35%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF V +MV H L G + RA P+E+
Sbjct: 32 RDSSTGRSRGFGFLTFKDPKCVNTVMVKEHYLDGKIIDPKRAIPREE------------- 78
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q K+FVG + Q+ T ++ R +F
Sbjct: 79 -----------------------------------QEKTAKMFVGGVSQDCTEDEFREFF 103
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
S FGR++D + P+ F F + + S+
Sbjct: 104 SAFGRVIDATLMIDKDTGRPRGFGFVTFESDAAVENAMSQ 143
>gi|390342772|ref|XP_003725734.1| PREDICTED: RNA-binding protein lark-like [Strongylocentrotus
purpuratus]
Length = 235
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
+ KK+FVG LPQ T +DL+ F+ G++++ V K + F H+ + SK+ +
Sbjct: 1 MAKKLFVGNLPQGCTNDDLKTLFATIGQVVECDVLKNYGFVHMSTIEEALEAVSKLGGHR 60
Query: 160 WTAGCNRFSHTT 171
R H+T
Sbjct: 61 LYGNAIRVQHST 72
>gi|297804878|ref|XP_002870323.1| hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp.
lyrata]
gi|297316159|gb|EFH46582.1| hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp.
lyrata]
Length = 407
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 36/157 (22%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ F+ ++ ++ D H + V V RA +E+ + G G N S
Sbjct: 47 RGFGFVIFSDPSVLDRVLQDKHNIDTREVDVKRAMSREE------QQVSGRTGNLNTSRS 100
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
+ G+S + KKIFVG LP T E+ R+YF +G + D
Sbjct: 101 SG---------------------GDSFNKT-KKIFVGGLPPTLTDEEFRQYFEVYGPVTD 138
Query: 131 VYV--------PKRFWFCHLCGRSCSRSCFSKVSRNL 159
V + P+ F F K +L
Sbjct: 139 VAIMYDQATNRPRGFGFVSFDSEDAVDRVLHKTFHDL 175
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ + RG GF++F S D+V+ ++ T H+L G V V RA PK+
Sbjct: 144 DQATNRPRGFGFVSFDSEDAVDRVLHKTFHDLSGKQVEVKRALPKD 189
>gi|47228652|emb|CAG07384.1| unnamed protein product [Tetraodon nigroviridis]
Length = 323
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T++S D V+ M H++ G V RA +ED RP
Sbjct: 46 RDPSSKRSRGFGFVTYSSVDEVDLAMGARPHKVDGRVVEPKRAVSREDSNRP-------- 97
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +R Y
Sbjct: 98 ----GAHVTV------------------------------KKIFVGGIKEDTEESHIRDY 123
Query: 122 FSRFGRI 128
F RFG+I
Sbjct: 124 FERFGKI 130
>gi|47086959|ref|NP_998482.1| uncharacterized protein LOC406277 [Danio rerio]
gi|45595715|gb|AAH67153.1| Zgc:56141 [Danio rerio]
Length = 341
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
KIF+G LPQ+A ++L+ FS++G + + + K F F H+ R + +K +NL
Sbjct: 3 KIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSA----TKAIKNL 55
>gi|390360718|ref|XP_780859.3| PREDICTED: TAR DNA-binding protein 43-like [Strongylocentrotus
purpuratus]
Length = 476
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 91 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---FWFCHLCGRSC 147
Y + Q +K+FVGRL + +D+ +YF++ G + DV++PK F F L
Sbjct: 183 YPDSQVEQPEKRKLFVGRLSPDVKEDDIYQYFAKIGEVTDVFIPKEFRGFAFVTLENAQI 242
Query: 148 SRSCFSK 154
++S +
Sbjct: 243 AQSLIGQ 249
>gi|298710527|emb|CBJ25591.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 502
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49
D+ ++ RG GF+TF V ++M+ THE+ G V V RA PKE+
Sbjct: 276 DRQTQRSRGFGFVTFQEDAVVHDIMMGTHEINGKMVEVKRAEPKEN 321
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 38/131 (29%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFI F ++ ++ H++ G V V RA PK + P R S
Sbjct: 181 KDKYTGHPRGFGFIKFEDITVLDEILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSSR--- 237
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A T KIFVG L + R+YF
Sbjct: 238 -------PAET----------------------------NKIFVGGLAPTVMMAEFRKYF 262
Query: 123 SRFGRILDVYV 133
FG ++D V
Sbjct: 263 ETFGGVVDAVV 273
>gi|326501296|dbj|BAJ98879.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 354
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 42/128 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG GFIT++ V+ +M DTH + G V + R PK+
Sbjct: 56 KNKQTSQPRGFGFITYSDPAVVDKVMEDTHVINGKQVEIKRTIPKD-------------- 101
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Y + KKIFVG LP T +D + +F
Sbjct: 102 ----------------------------YMKSNPKDFRTKKIFVGGLPPILTEDDFKDFF 133
Query: 123 SRFGRILD 130
++G +++
Sbjct: 134 EKYGAVVE 141
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATPKEDDFRPV 54
+D ++ RG GF+ F S + V++L+ + + +L GS V + +A PK+ P
Sbjct: 146 RDHQTRRSRGFGFVVFESEEVVDDLLANGNMIDLAGSKVEIKKAEPKKSSNLPT 199
>gi|148237229|ref|NP_001080689.1| heterogeneous nuclear ribonucleoprotein A1 [Xenopus laevis]
gi|28374304|gb|AAH45260.1| Hnrpa1 protein [Xenopus laevis]
Length = 399
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T++S D V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNSKRSRGFGFVTYSSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLREY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|432921337|ref|XP_004080108.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 344
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
KIFVG LP+EAT E+++ F +G + + + K F F H+ R + +K +NL
Sbjct: 3 KIFVGNLPREATEEEIKALFEEYGAVTECAIIKNFAFVHMEDRKAA----TKAIKNL 55
>gi|85000983|ref|XP_955210.1| RNA-binding protein [Theileria annulata strain Ankara]
gi|65303356|emb|CAI75734.1| RNA-binding protein, putative [Theileria annulata]
Length = 406
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
R K+FVGR+ E + LR YFS+FG ++DVY+PK
Sbjct: 310 RNAPKLFVGRIGFETSVHSLRSYFSQFGDVIDVYIPK 346
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
+IF+ R+ EAT +DL YF +FG + D Y PK+ + L
Sbjct: 111 ANRIFITRIAFEATKDDLEDYFKKFGTVYDAYCPKQNNYSGL 152
>gi|224126191|ref|XP_002329613.1| predicted protein [Populus trichocarpa]
gi|222870352|gb|EEF07483.1| predicted protein [Populus trichocarpa]
Length = 166
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 53/143 (37%), Gaps = 48/143 (33%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYG 63
D+ S RG GF+TFA + ++ + H + G V V R P+ED V R
Sbjct: 34 DRHSGRPRGFGFVTFADPVVADRVLEEDHVIDGRAVEVKRTVPREDMEVRVTRT------ 87
Query: 64 AYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFS 123
KKIFVG +P T ++L+ YFS
Sbjct: 88 --------------------------------------KKIFVGGIPPSLTEDELKEYFS 109
Query: 124 RFGRILDVYVPKRFWFCHLCGRS 146
+G I+D + H GRS
Sbjct: 110 VYGSIVD----HQIMLDHKTGRS 128
>gi|133258|sp|P17130.1|ROA1_XENLA RecName: Full=Heterogeneous nuclear ribonucleoproteins A1 homolog;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand-binding protein;
AltName: Full=hnRNP core protein A1
gi|214239|gb|AAA49741.1| ribonucleoprotein A1a [Xenopus laevis]
Length = 365
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T+ S D V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ + LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEDHLREY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|356547342|ref|XP_003542073.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Glycine max]
Length = 353
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED--DFRPVGRMSH 59
D + RG GF+TF DSVE + HE+GG V + RA PK D+ R S+
Sbjct: 163 DHNTGRSRGFGFVTFDDEDSVEKVFSVGKIHEIGGKQVEIKRAEPKRSGVDYCNTSRKSY 222
Query: 60 GGYG 63
GG+G
Sbjct: 223 GGFG 226
>gi|58331869|ref|NP_001011094.1| heterogeneous nuclear ribonucleoprotein A1 [Xenopus (Silurana)
tropicalis]
gi|54038494|gb|AAH84487.1| heterogeneous nuclear ribonucleoprotein A1 [Xenopus (Silurana)
tropicalis]
Length = 343
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T++S D V+ M H++ G V RA +ED RP
Sbjct: 44 RDPNSKRSRGFGFVTYSSTDEVDAAMSARPHKVDGRVVEPKRAVSREDSSRP-------- 95
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 96 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLREY 121
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 122 FEQYGKIEVIEI 133
>gi|225708396|gb|ACO10044.1| TAR DNA-binding protein 43 [Osmerus mordax]
Length = 304
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
P S G E QR +KIFVGR ++ T ++LR++F ++G + DV++PK F
Sbjct: 185 PNSKVGPDEP-QRC-RKIFVGRCTEDMTTDELRQFFMQYGEVTDVFIPKPF 233
>gi|75334879|sp|Q9LEB3.1|RBP47_NICPL RecName: Full=Polyadenylate-binding protein RBP47;
Short=Poly(A)-binding protein RBP47; AltName:
Full=RNA-binding protein 47; Short=NplRBP47
gi|9663769|emb|CAC01238.1| RNA Binding Protein 47 [Nicotiana plumbaginifolia]
Length = 428
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGST--VVVDRATPKEDDFRPVGRMSHGGYGAYNAY 68
+G GF+ F M + + + S+ + + ATPK +P +H Y +
Sbjct: 219 KGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPK----KPS---AHEQYSSQAVI 271
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
+S YA+ GA T +G IFVG L E T E+LR+ F++FG +
Sbjct: 272 LSGG--YASNGAAT--------HGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEV 321
Query: 129 LDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
+ V +P K F RS ++ K+S
Sbjct: 322 VSVKIPAGKGCGFVQFSDRSSAQEAIQKLS 351
>gi|147900728|ref|NP_001081282.1| heterogeneous nuclear ribonucleoproteins A1 homolog [Xenopus
laevis]
gi|47938744|gb|AAH72090.1| LOC397751 protein [Xenopus laevis]
Length = 365
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T+ S D V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ + LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEDHLREY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|76156635|gb|AAX27802.2| SJCHGC01369 protein [Schistosoma japonicum]
Length = 386
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+ VG L ++ + E LR++FS++GR+ DV++PK F
Sbjct: 186 QDVARKVHVGGLTEDISPETLRQHFSQYGRVSDVFIPKPF 225
>gi|326506828|dbj|BAJ91455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 351
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFITF S D+V+ ++ T H+LGG V V RA P+E
Sbjct: 50 DQTTQRPRGFGFITFDSEDAVDRVLHKTFHDLGGKMVEVKRALPRE 95
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KKIFVG LP T E+ R+YF FG + DV V
Sbjct: 16 KKIFVGGLPSSLTDEEFRQYFQTFGAVTDVVV 47
>gi|449019177|dbj|BAM82579.1| probable heterogeneous nuclear RNP protein A [Cyanidioschyzon
merolae strain 10D]
Length = 273
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 53/126 (42%), Gaps = 32/126 (25%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK--EDDFRPVGRMSHGGYGAYNA 67
RG GF+TF + + ++ HEL G V A PK ED N
Sbjct: 49 RGFGFVTFEEEGVAQAVASLERHELDGRLVETKVAVPKSAEDP-------------ESNT 95
Query: 68 YISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR 127
+ A RY P+ G GE R +++V LPQ T +DLR +FSRFG
Sbjct: 96 VVDTAQRYG----PS---------GLGEKPSR---RVYVSGLPQACTEDDLRAFFSRFGS 139
Query: 128 ILDVYV 133
+ V V
Sbjct: 140 LEAVRV 145
>gi|94482834|gb|ABF22450.1| heterogeneous nuclear ribonucleoprotein A1 [Takifugu rubripes]
Length = 255
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T++S D V+ M H++ G V RA +ED RP
Sbjct: 46 RDPNSKRSRGFGFVTYSSVDEVDLAMTARPHKVDGRVVEPKRAVSREDSNRP-------- 97
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +R Y
Sbjct: 98 ----GAHVTV------------------------------KKIFVGGIKEDTEESHIRDY 123
Query: 122 FSRFGRI 128
F RFG+I
Sbjct: 124 FERFGKI 130
>gi|6566348|dbj|BAA88269.1| RNA binding protein [Arabidopsis thaliana]
Length = 381
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG GF+ FA+ V + DTH + G V V +A K + ++ M
Sbjct: 39 KEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQ---- 94
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ + G + + G +S+ KKIFVG L T E+ + YF
Sbjct: 95 -----FLERKVQQMNGGLREMSSN-------GVTSRT--KKIFVGGLSSNTTEEEFKSYF 140
Query: 123 SRFGRILDVYV 133
RFGR DV V
Sbjct: 141 ERFGRTTDVVV 151
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
RG GF+T+ S DSVE +M HEL V V RA PKE
Sbjct: 161 RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKE 199
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG + +E + E L++YFSR+G +L+ V K
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKE 40
>gi|356513961|ref|XP_003525676.1| PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max]
Length = 2304
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 52/132 (39%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK----EDDFRPVGRMS 58
KD+ + RG GFIT+A V+ ++ D H + G V + R P+ DFR
Sbjct: 2009 KDRKTGQPRGFGFITYADPSVVDKVIEDPHIINGKQVEIKRTIPRGAVGSKDFR------ 2062
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDL 118
KKIFVG +P T ++
Sbjct: 2063 ------------------------------------------TKKIFVGGIPSNVTEDEF 2080
Query: 119 RRYFSRFGRILD 130
R +F+R+G + D
Sbjct: 2081 RDFFTRYGEVKD 2092
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 3 KDQGSKAHRGIGFITFASADSVENL--MVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG 60
+D + RG GFITF S ++V++L M + + GS V + +A PK+ P H
Sbjct: 2097 RDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIDFAGSQVEIKKAEPKKPSSAPPSSKRHN 2156
>gi|161084519|ref|NP_001097631.1| RNA-binding protein 6, isoform B [Drosophila melanogaster]
gi|158028569|gb|ABW08559.1| RNA-binding protein 6, isoform B [Drosophila melanogaster]
Length = 499
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+ + V R
Sbjct: 62 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRT---- 117
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED++ Y
Sbjct: 118 ----------------------------------------KKIFVGGLSAPTTLEDVKSY 137
Query: 122 FSRFGRILDVYV 133
F +FG I D +
Sbjct: 138 FEQFGPIEDAML 149
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D V+ + + HE+ V +A PKE
Sbjct: 152 DKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 197
>gi|2078531|gb|AAC53171.1| Mlark [Mus musculus]
Length = 367
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
K+F+G LP+EAT +++R F ++G++L+ + K + F H+
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 42
>gi|149062001|gb|EDM12424.1| rCG48244, isoform CRA_b [Rattus norvegicus]
Length = 172
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
K+F+G LP+EAT +++R F ++G++L+ + K + F H+ ++ + RNL
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI----RNL 55
>gi|341874087|gb|EGT30022.1| hypothetical protein CAEBREN_23175 [Caenorhabditis brenneri]
Length = 335
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKE 48
+D +K RG GF+TFAS S E+ M D H+LGG TV RA P+E
Sbjct: 103 RDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPRE 149
>gi|22328624|ref|NP_193166.2| ribonucleoprotein 1 [Arabidopsis thaliana]
gi|18152698|emb|CAC83517.1| ribonucleoprotein 1 [Arabidopsis thaliana]
gi|110740752|dbj|BAE98475.1| ribonucleoprotein like protein [Arabidopsis thaliana]
gi|332658011|gb|AEE83411.1| ribonucleoprotein 1 [Arabidopsis thaliana]
Length = 411
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 36/157 (22%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ F+ ++ ++ + H + V V RA +E+ + G G N S
Sbjct: 47 RGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREE------QQVSGRTGNLNTSRS 100
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
+ G Y + KKIFVG LP T E+ R+YF +G + D
Sbjct: 101 SG---------------GDAYNKT-------KKIFVGGLPPTLTDEEFRQYFEVYGPVTD 138
Query: 131 VYV--------PKRFWFCHLCGRSCSRSCFSKVSRNL 159
V + P+ F F S K +L
Sbjct: 139 VAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDL 175
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ + RG GF++F S D+V++++ T H+L G V V RA PK+
Sbjct: 144 DQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
>gi|2078529|gb|AAC51293.1| Hlark [Homo sapiens]
Length = 366
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
K+F+G LP+EAT +++R F ++G++L+ + K + F H+
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 42
>gi|257215902|emb|CAX83103.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
Length = 357
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+ VG L ++ + E LR++FS++GR+ DV++PK F
Sbjct: 191 QDVARKVHVGGLTEDISPETLRQHFSQYGRVSDVFIPKPF 230
>gi|257215904|emb|CAX83104.1| TAR DNA-binding protein 43 [Schistosoma japonicum]
Length = 357
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
Q + +K+ VG L ++ + E LR++FS++GR+ DV++PK F
Sbjct: 191 QDVARKVHVGGLTEDISPETLRQHFSQYGRVSDVFIPKPF 230
>gi|395841109|ref|XP_003793391.1| PREDICTED: TAR DNA-binding protein 43 [Otolemur garnettii]
Length = 244
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 29/36 (80%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+K+FVGR ++ T ++LR++F ++G ++DV++PK F
Sbjct: 140 RKVFVGRCTEDMTDDELRQFFCQYGEVVDVFIPKPF 175
>gi|25147057|ref|NP_741784.1| Protein H28G03.1, isoform c [Caenorhabditis elegans]
gi|351064184|emb|CCD72473.1| Protein H28G03.1, isoform c [Caenorhabditis elegans]
Length = 335
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKE 48
+D +K RG GF+TFAS S E+ M D H+LGG TV RA P+E
Sbjct: 102 RDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPRE 148
>gi|29125866|emb|CAD67787.1| hn ribonucleoprotein A2 [Tetraodon nigroviridis]
Length = 191
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T++S D V+ M H++ G V RA +ED RP
Sbjct: 42 RDPSSKRSRGFGFVTYSSVDEVDLAMGARPHKVDGRVVEPKRAVSREDSNRP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +R Y
Sbjct: 94 ----GAHVTV------------------------------KKIFVGGIKEDTEESHIRDY 119
Query: 122 FSRFGRI 128
F RFG+I
Sbjct: 120 FERFGKI 126
>gi|2582639|emb|CAA05398.1| hnRNP-like protein [Arabidopsis thaliana]
Length = 452
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFITF S +SV+ ++ T HEL G V V RA PKE R GY
Sbjct: 83 DHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGY 142
Query: 63 GAYNAYISAATRYAA 77
G N Y R +A
Sbjct: 143 G--NNYGVVPNRSSA 155
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 41/113 (36%)
Query: 29 VDTHELGGSTVVVDRATPKEDDF---RPVGRM-----SHGGYGAYNAYISAATRYAALGA 80
+D H + G TV +A P++D R M SHGG G GA
Sbjct: 1 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGG--------------GA 46
Query: 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
T KKIFVG LP T + + YF +FG I DV V
Sbjct: 47 RT-------------------KKIFVGGLPSSITEAEFKNYFDQFGTIADVVV 80
>gi|25147051|ref|NP_741783.1| Protein H28G03.1, isoform a [Caenorhabditis elegans]
gi|351064182|emb|CCD72471.1| Protein H28G03.1, isoform a [Caenorhabditis elegans]
Length = 336
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKE 48
+D +K RG GF+TFAS S E+ M D H+LGG TV RA P+E
Sbjct: 103 RDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPRE 149
>gi|336472157|gb|EGO60317.1| hypothetical protein NEUTE1DRAFT_56573, partial [Neurospora
tetrasperma FGSC 2508]
Length = 139
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF +V +MV H L G + RA P+++
Sbjct: 32 RDGATGRSRGFGFLTFKDPKTVNIVMVKEHYLDGKIIDPKRAIPRDE------------- 78
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + QE T + R YF
Sbjct: 79 -----------------------------------QEKTSKIFVGGVSQETTDHEFREYF 103
Query: 123 SRFGRILD 130
++FGR++D
Sbjct: 104 AQFGRVVD 111
>gi|297840659|ref|XP_002888211.1| RNA-binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297334052|gb|EFH64470.1| RNA-binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 359
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 54/146 (36%), Gaps = 48/146 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA+ V + TH + G V V +A K +
Sbjct: 39 KDKVTGISRGFGFVRFANDYDVVKALSGTHFILGKPVDVRKAFRKHE------------- 85
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSF-YGRGESSQRIG--------------KKIFVG 107
LY HP S G+ Q G KKIFVG
Sbjct: 86 --------------------LYQHPFSMQVFEGKVQQTNGGLREMASNGNIHRTKKIFVG 125
Query: 108 RLPQEATAEDLRRYFSRFGRILDVYV 133
L T E+ + YF RFGR +DV V
Sbjct: 126 GLSSNTTQEEFKSYFERFGRTIDVVV 151
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
RG GF+T+ S DSVE +M HEL V V RA PKE
Sbjct: 161 RGFGFVTYDSEDSVEFVMQSNFHELSDKRVEVKRAIPKE 199
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+FVG + +E + EDL++YFSR+G +L V K
Sbjct: 7 KLFVGGIGKETSEEDLKQYFSRYGLVLGAVVAK 39
>gi|197209735|dbj|BAG68909.1| RNA binding protein [Arabidopsis thaliana]
Length = 359
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG GF+ FA+ V + DTH + G V V +A K + ++ M
Sbjct: 39 KEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHEIYQQPFSMQ---- 94
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ + G + + G +S+ KKIFVG L T E+ + YF
Sbjct: 95 -----FLERKMQQMNGGLREMSSN-------GVTSR--SKKIFVGGLSSNTTEEEFKSYF 140
Query: 123 SRFGRILDVYV 133
RFGR DV V
Sbjct: 141 ERFGRTTDVVV 151
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
RG GF+T+ S DSVE +M HEL V V RA PKE
Sbjct: 161 RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKE 199
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG + +E + E L++YFSR+G +L+ V K
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKE 40
>gi|195591012|ref|XP_002085238.1| GD12423 [Drosophila simulans]
gi|194197247|gb|EDX10823.1| GD12423 [Drosophila simulans]
Length = 351
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 62 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRR------------- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KKIFVG L T ED++ Y
Sbjct: 109 -----AHPKMVTRT--------------------------KKIFVGGLSAPTTLEDVKSY 137
Query: 122 FSRFGRILDVYV 133
F +FG I D +
Sbjct: 138 FEQFGPIEDAML 149
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D V+ + + HE+ V +A PKE
Sbjct: 152 DKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 197
>gi|302760911|ref|XP_002963878.1| hypothetical protein SELMODRAFT_4662 [Selaginella moellendorffii]
gi|302813190|ref|XP_002988281.1| hypothetical protein SELMODRAFT_4658 [Selaginella moellendorffii]
gi|300144013|gb|EFJ10700.1| hypothetical protein SELMODRAFT_4658 [Selaginella moellendorffii]
gi|300169146|gb|EFJ35749.1| hypothetical protein SELMODRAFT_4662 [Selaginella moellendorffii]
Length = 188
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 42/165 (25%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ F+ + + +++D H + G A P+++ H
Sbjct: 39 RDRTTGRARGFGFVVFSDPNCADRVLLDKHTIDGRV-----AVPRDE--------QHSVV 85
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A + ++ PG G +S + KKIFVG L T +D R+YF
Sbjct: 86 KANGSAVAG---------------PG-----GHASSKT-KKIFVGGLGSNVTEDDFRKYF 124
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSKVSRNL 159
+FG I DV V P+ F F + K L
Sbjct: 125 EQFGTITDVVVMYDHATQRPRGFGFITFDTEEAVDNVLHKTFHEL 169
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFITF + ++V+N++ T HEL V V RA PKE
Sbjct: 138 DHATQRPRGFGFITFDTEEAVDNVLHKTFHELKEKMVEVKRAVPKE 183
>gi|294941656|ref|XP_002783174.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239895589|gb|EER14970.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 527
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IFV +P AT DLR YF+ FG + DVY+PK
Sbjct: 240 RIFVKHVPDSATRLDLRAYFNNFGEVTDVYIPK 272
>gi|432888898|ref|XP_004075077.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 417
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
KIF+G L E T E+LR FS++G+I + + K F F H+
Sbjct: 3 KIFIGNLAPETTTEELRSLFSQYGKIAECSIVKNFGFVHM 42
>gi|1149523|emb|CAA64070.1| Neosin [Mus musculus]
Length = 153
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
K+F+G LP+EAT +++R F ++G++L+ + K + F H+
Sbjct: 25 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHI 64
>gi|260790117|ref|XP_002590090.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
gi|229275278|gb|EEN46101.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
Length = 326
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 90 FYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSR 149
F GR S + K++VG +PQ A +DL+ F +FG++ + + K + F H+ +
Sbjct: 9 FPGRNSSKGEMTTKLYVGNVPQPARKKDLQDLFEKFGKVNECDIIKNYGFVHMDNEQDAN 68
Query: 150 SCFSKVSRNLW 160
++ W
Sbjct: 69 DAIKALTNTEW 79
>gi|363746191|ref|XP_003643562.1| PREDICTED: RNA-binding protein 14-like, partial [Gallus gallus]
Length = 144
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 99 RIGKKIFVGRLPQEATAEDLRRYFSRF-GRILDVYVPKRFWFCHL 142
R G K+FVG +P+EATAE+L FS G +L + + K+F F HL
Sbjct: 31 RPGIKLFVGNVPEEATAEELSELFSGVAGPVLGIALMKQFAFVHL 75
>gi|125577795|gb|EAZ19017.1| hypothetical protein OsJ_34549 [Oryza sativa Japonica Group]
Length = 481
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
D ++ RG GFIT+ S D+V+ + T HEL G V V RA PKE P R GG+
Sbjct: 154 DHNTQRPRGFGFITYDSEDAVDKALFKTFHELNGKMVEVKRAVPKELSPGPSMRSPVGGF 213
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 26/146 (17%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GFI FA E ++++ H + G R +DD G
Sbjct: 39 RDRATGRARGFGFIVFADPAVAERVIMEKHMIDG------RMIHDDDD----------GV 82
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ + A L GS +G S+ KKIFVG L T D R+YF
Sbjct: 83 LDPSMVVEAKKAVPRDDQHALSKSGGSAHGSPGPSRT--KKIFVGGLASTVTEADFRKYF 140
Query: 123 SRFGRILDVYV--------PKRFWFC 140
+FG I DV V P+ F F
Sbjct: 141 EQFGTITDVVVMYDHNTQRPRGFGFI 166
>gi|449458854|ref|XP_004147161.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Cucumis
sativus]
Length = 462
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 27/131 (20%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ F+ ++ ++ D H + G TV RA +E+ P R S+
Sbjct: 39 RDKITSRPRGFGFVVFSDPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPA-RASNSNG 97
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
R KKIFVG LP T E + YF
Sbjct: 98 RNSGGSGGGNMRT--------------------------KKIFVGGLPPTLTEEGFKEYF 131
Query: 123 SRFGRILDVYV 133
+G + DV V
Sbjct: 132 EAYGHVTDVVV 142
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGR 56
DQ ++ RG GFI+F + ++V+ ++ T H+L G V V RA PK+ + GR
Sbjct: 145 DQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGAGGR 198
>gi|156083280|ref|XP_001609124.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP) domain containing
protein [Babesia bovis T2Bo]
gi|154796374|gb|EDO05556.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP) domain containing
protein [Babesia bovis]
Length = 244
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IF+ +L EAT DL+ YFS+FG I D+++P+
Sbjct: 146 RIFISKLAYEATHNDLQSYFSQFGNITDIHIPR 178
>gi|15217975|ref|NP_176143.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|12321044|gb|AAG50640.1|AC082643_4 RNA binding protein [Arabidopsis thaliana]
gi|15450912|gb|AAK96727.1| RNA binding protein [Arabidopsis thaliana]
gi|17978725|gb|AAL47356.1| RNA binding protein [Arabidopsis thaliana]
gi|18181938|dbj|BAB83876.1| RNA binding protein [Arabidopsis thaliana]
gi|332195431|gb|AEE33552.1| RNA-binding protein 1 [Arabidopsis thaliana]
Length = 360
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG GF+ FA+ V + DTH + G V V +A K + ++ M
Sbjct: 39 KEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQ---- 94
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ + G + + G +S+ KKIFVG L T E+ + YF
Sbjct: 95 -----FLERKVQQMNGGLREMSSN-------GVTSRT--KKIFVGGLSSNTTEEEFKSYF 140
Query: 123 SRFGRILDVYV 133
RFGR DV V
Sbjct: 141 ERFGRTTDVVV 151
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
RG GF+T+ S DSVE +M HEL V V RA PKE
Sbjct: 161 RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKE 199
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG + +E + E L++YFSR+G +L+ V K
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKE 40
>gi|356547577|ref|XP_003542187.1| PREDICTED: DAZ-associated protein 1-like [Glycine max]
Length = 352
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT+A V+ ++ + H + G V + R PK
Sbjct: 51 KDRHTGRPRGFGFITYADPSVVDQVIQENHVVNGKQVEIKRTIPK--------------- 95
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G +++ KKIFVG +P + ++L+ +F
Sbjct: 96 -----------------------------GSSQANDFKTKKIFVGGIPTSVSEDELKNFF 126
Query: 123 SRFGRILD 130
S++G++++
Sbjct: 127 SKYGKVVE 134
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATPKE 48
+D +K RG GFI F S V+N++ D + ++GG+ V + +A PK+
Sbjct: 139 RDHTTKRSRGFGFIVFDSEKVVDNILADGNMIDMGGTQVEIKKAEPKK 186
>gi|413925207|gb|AFW65139.1| hypothetical protein ZEAMMB73_790427, partial [Zea mays]
Length = 221
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 50/146 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT++ V+ ++ D H + G V + R PK
Sbjct: 58 KDRHTSQPRGFGFITYSDPAVVDKVIEDNHVINGKQVEIKRTIPK--------------- 102
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR--IGKKIFVGRLPQEATAEDLRR 120
G +SS + KKIFVG LP T ++ +
Sbjct: 103 -----------------------------GSVQSSSKDFKTKKIFVGGLPSTLTEDEFKS 133
Query: 121 YFSRFGRILDVYVPKRFWFCHLCGRS 146
+F+R+G ++D + F H RS
Sbjct: 134 FFARYGTVVD----HQIMFDHETKRS 155
>gi|25513662|pir||F89530 protein H28G03.1 [imported] - Caenorhabditis elegans
Length = 336
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKE 48
+D +K RG GF+TFAS S E+ M D H+LGG TV RA P+E
Sbjct: 103 RDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPRE 149
>gi|297743097|emb|CBI35964.3| unnamed protein product [Vitis vinifera]
Length = 353
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 50/136 (36%), Gaps = 47/136 (34%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GFITFA + ++ + H + G V V + P+E
Sbjct: 92 RGFGFITFADPAVADKVLEEDHVIDGRAVEVKKTVPRE---------------------- 129
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
RG S R KIFVG +P T ++L+ YFS +G I
Sbjct: 130 ------------------GMEVRGVSKTR---KIFVGGIPSSLTEDELKDYFSSYGAI-- 166
Query: 131 VYVPKRFWFCHLCGRS 146
V + H+ GRS
Sbjct: 167 --VENQIMLDHVTGRS 180
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47
RG GF+TF S D+VE L + THELGG V + +A PK
Sbjct: 181 RGFGFVTFVSEDAVERLFSEGKTHELGGKLVEIKKAEPK 219
>gi|146197870|dbj|BAF57645.1| hnRNP A2/B1 protein [Dugesia japonica]
Length = 386
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D+ RG GF+ F A+SV+ + H+L G V RA PKE+ P +
Sbjct: 51 RDKTGNKSRGFGFVVFKEAESVDRCQAERPHQLLGKIVDTKRAMPKEESLNPDIHCN--- 107
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
K+IF+G + + T +DL+ Y
Sbjct: 108 ---------------------------------------SKRIFIGGIRRFFTEDDLKDY 128
Query: 122 FSRFGRILDVYV 133
FS FG I+D +
Sbjct: 129 FSTFGEIVDCTI 140
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
+Q KKIFVG LP + T D+R+YFS++G + DV
Sbjct: 13 TQNKFKKIFVGGLPPQTTESDMRQYFSKYGDVCDV 47
>gi|25147054|ref|NP_741785.1| Protein H28G03.1, isoform b [Caenorhabditis elegans]
gi|351064183|emb|CCD72472.1| Protein H28G03.1, isoform b [Caenorhabditis elegans]
Length = 315
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKE 48
+D +K RG GF+TFAS S E+ M D H+LGG TV RA P+E
Sbjct: 82 RDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPRE 128
>gi|226472204|emb|CAX77138.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
[Schistosoma japonicum]
Length = 293
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 44/132 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD S+ RG F+T+ A SV+ + H + G V RA P+E+
Sbjct: 47 KDPRSQKSRGFVFVTYRDASSVDAAQNNRPHTVDGKEVDTKRAMPREE------------ 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
++ +AA+ KKIFVG L ++ T EDL Y
Sbjct: 95 --------TSPEVHAAV-----------------------KKIFVGALKKDVTNEDLSDY 123
Query: 122 FSRFGRILDVYV 133
FS+FG + D +
Sbjct: 124 FSQFGTVTDAQI 135
>gi|308510723|ref|XP_003117544.1| hypothetical protein CRE_00749 [Caenorhabditis remanei]
gi|308238190|gb|EFO82142.1| hypothetical protein CRE_00749 [Caenorhabditis remanei]
Length = 336
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKE 48
+D +K RG GF+TFAS S E+ M D H+LGG TV RA P+E
Sbjct: 103 RDPTTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPRE 149
>gi|124808251|ref|XP_001348269.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23497160|gb|AAN36708.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 514
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+FVG LP+E T E+LR F+R+G + +VY+ K
Sbjct: 153 KLFVGSLPKEITEEELRELFNRYGNVTEVYIMK 185
>gi|255538402|ref|XP_002510266.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223550967|gb|EEF52453.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 443
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQ-------RIGKKIFVGRLPQEATAEDLRRY 121
I AAT + G Y H G + G S Q IFVG L T EDL++
Sbjct: 276 IGAATPRKSTG----YQHQGGYVSNGASGQAFQADGDSTNTTIFVGGLDPNVTDEDLKQP 331
Query: 122 FSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
FS++G I+ V +P K F RS + K++
Sbjct: 332 FSQYGEIVSVKIPVGKGCGFVQFASRSNAEEALQKLN 368
>gi|125527839|gb|EAY75953.1| hypothetical protein OsI_03870 [Oryza sativa Indica Group]
Length = 312
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 51/164 (31%)
Query: 2 PKDQGSKAHRGIGFITFASADSVENLMV---DTHELGGSTVVVDRATPKEDDFRPVGRMS 58
PK++ + A RG F+ F + D + D + + G+T+ V A PK
Sbjct: 61 PKNKQTGAARGFAFVQFVNPDDAAAAIAAGPDRNVIRGTTMDVKLAQPKP---------- 110
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDL 118
+ G P L PG Q+ +KIFVG LP AT + L
Sbjct: 111 ------------------SAGGPQL--SPGD--------QK--RKIFVGGLPVSATEKKL 140
Query: 119 RRYFSRFGRI--------LDVYVPKRFWFCHLCGRSCSRSCFSK 154
+ YFS+FG + L+ +P+ F F + K
Sbjct: 141 KEYFSKFGEVNHAIVVTDLNTKMPRGFGFIQFASEESTARALKK 184
>gi|359482522|ref|XP_002276110.2| PREDICTED: nucleolin-like [Vitis vinifera]
Length = 501
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47
RG GF+TF S D+VE L + THELGG V + +A PK
Sbjct: 329 RGFGFVTFVSEDAVERLFSEGKTHELGGKLVEIKKAEPK 367
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 50/136 (36%), Gaps = 47/136 (34%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GFITFA + ++ + H + G V V + P+E
Sbjct: 240 RGFGFITFADPAVADKVLEEDHVIDGRAVEVKKTVPRE---------------------- 277
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
RG S R KIFVG +P T ++L+ YFS +G I
Sbjct: 278 ------------------GMEVRGVSKTR---KIFVGGIPSSLTEDELKDYFSSYGAI-- 314
Query: 131 VYVPKRFWFCHLCGRS 146
V + H+ GRS
Sbjct: 315 --VENQIMLDHVTGRS 328
>gi|294900696|ref|XP_002777071.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239884525|gb|EER08887.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 164
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+IFV +P AT DLR YF+ FG + DVY+PK
Sbjct: 31 RIFVKHVPDSATRLDLRAYFNNFGEVTDVYIPK 63
>gi|341865543|tpg|DAA34911.1| TPA_exp: RRM domain-containing RNA-binding protein Bruno
[Pleurobrachia pileus]
Length = 384
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 43/154 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ SKAH+G F+TF + D+ EN M + H+ + KE + V
Sbjct: 51 RDRDSKAHKGCAFVTFTNLDNAENAMHEMHDR-----IALPGAKKEMQIKAV-------- 97
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ +++ K++FVG + + ++L+ F
Sbjct: 98 ------------------------------HDDDNKKFDKRLFVGMISKSLNGDELKAMF 127
Query: 123 SRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVS 156
+FG ++D + R C F+K S
Sbjct: 128 EQFGEVVDCNILTSMINGEKMSRGCGFVKFAKAS 161
>gi|340378651|ref|XP_003387841.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Amphimedon queenslandica]
Length = 409
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 42/132 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD + RG GFIT+ S +SVE + + HE+ V RA P+E+
Sbjct: 32 KDPQTNRPRGFGFITYTSPESVERCLAEGPHEIDERIVETKRAVPREE------------ 79
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
TR E S + KK+F+G L AT + L RY
Sbjct: 80 -----------TRQEP-----------------EPSSK-SKKMFIGGLTTSATKDKLERY 110
Query: 122 FSRFGRILDVYV 133
+ ++G I+D V
Sbjct: 111 YGQWGMIIDAAV 122
>gi|307102563|gb|EFN50834.1| expressed protein [Chlorella variabilis]
Length = 383
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
DH RG G ++F G +P E + E ++ +FS++G +LDVY PKR
Sbjct: 34 DHLAHVASRGS-----GPRLFCGHVPPECSEELVKAHFSQWGHVLDVYFPKR 80
>gi|313227708|emb|CBY22856.1| unnamed protein product [Oikopleura dioica]
Length = 442
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+GE+ ++ +K+FVGRL + DL+ YFS+FG+I ++ +P+ F
Sbjct: 201 KGETGNQL-RKVFVGRLTTDLNRHDLQEYFSQFGQITEITIPQPF 244
>gi|395521768|ref|XP_003764987.1| PREDICTED: serine/arginine-rich splicing factor 10 [Sarcophilus
harrisii]
Length = 347
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFW 138
G K+ V RL ++A +EDLRR F R+G I+DVYVP F+
Sbjct: 93 FGGKLRVWRLVKDAGSEDLRREFGRYGPIVDVYVPLDFY 131
>gi|324509835|gb|ADY44122.1| TAR DNA-binding protein 43 [Ascaris suum]
Length = 472
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSR-------FGRILDVYVPKRF 137
+GE SQ + ++F+GR+P+ TA+DLR +F+ + DVY+P+ F
Sbjct: 243 KGEVSQPLITRVFLGRVPESMTADDLRSFFNEEAAKYDPEATVTDVYIPRPF 294
>gi|328870963|gb|EGG19335.1| hypothetical protein DFA_02122 [Dictyostelium fasciculatum]
Length = 622
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 66 NAYISAATRYAALGAPTLYDHPGSFY------GRGESSQRI-----GKKIFVGRLPQEAT 114
NA ++AAT Y G + PG+F G+ + Q++ K++VG LPQ+ T
Sbjct: 102 NAAVAAATGYYTRGVGVVGAPPGAFPPIGVHGGQFVNQQQVIIQPEVSKMWVGNLPQDTT 161
Query: 115 AEDLRRYFSRFGRILDVYVPKRFWF 139
++LR +FS +G+I + V R F
Sbjct: 162 EDELRVFFSPYGKIESIKVDYRCAF 186
>gi|147804734|emb|CAN67089.1| hypothetical protein VITISV_033546 [Vitis vinifera]
Length = 145
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 50/136 (36%), Gaps = 47/136 (34%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GFITFA + ++ + H + G V V + P+E
Sbjct: 10 RGFGFITFADPAVADKVLEEDHVIDGRAVEVKKTVPRE---------------------- 47
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
RG S R KIFVG +P T ++L+ YFS +G I
Sbjct: 48 ------------------GMEVRGVSKTR---KIFVGGIPSSLTEDELKDYFSSYGAI-- 84
Query: 131 VYVPKRFWFCHLCGRS 146
V + H+ GRS
Sbjct: 85 --VENQIMLDHVTGRS 98
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVV 41
RG GF+TF S D+VE L + THELGG V +
Sbjct: 99 RGFGFVTFVSEDAVERLFSEGKTHELGGKLVTL 131
>gi|343455562|gb|AEM36348.1| At1g58470 [Arabidopsis thaliana]
Length = 360
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 18/131 (13%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
K++ + RG GF+ FA+ V + DTH + G V V +A K + + M
Sbjct: 39 KEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHEIYHQPFSMQ---- 94
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
++ + G + + G +S+ KKIFVG L T E+ + YF
Sbjct: 95 -----FLERKMQQMNGGLREMSSN-------GVASR--SKKIFVGGLSSNTTEEEFKSYF 140
Query: 123 SRFGRILDVYV 133
RFGR DV V
Sbjct: 141 ERFGRTTDVVV 151
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 11 RGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
RG GF+T+ S DSVE +M HEL V V RA PKE
Sbjct: 161 RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKE 199
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG + +E + E L++YFSR+G +L+ V K
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKE 40
>gi|386766504|ref|NP_001247304.1| musashi, isoform D [Drosophila melanogaster]
gi|383292950|gb|AFH06621.1| musashi, isoform D [Drosophila melanogaster]
Length = 605
Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +VE ++ V H L G + ATPK RP
Sbjct: 207 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 255
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 256 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 281
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 282 FSQFGPV 288
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 293 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 341
>gi|157423039|gb|AAI53535.1| Dazap1 protein [Danio rerio]
Length = 385
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GFITF + SV+ + + H++ G V V +A P++ G++ +G A I
Sbjct: 154 RGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEPRDSKAPAPGQLGANQWGP-RAII 212
Query: 70 SAATRYAALGAPTL---YDHPGSFYGRGESSQRIGKKIFVGR 108
SAA +AA APT Y G + G+ G + GR
Sbjct: 213 SAANGWAAQPAPTWQQSYGPQGVWVSTGQPLAGYGPPLPAGR 254
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSK 154
K+FVG L T E LR YFS++G ++D + K F F +C R+
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 155 VSRNL 159
NL
Sbjct: 72 KPHNL 76
>gi|442621132|ref|NP_001262959.1| musashi, isoform E [Drosophila melanogaster]
gi|440217892|gb|AGB96339.1| musashi, isoform E [Drosophila melanogaster]
Length = 618
Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +VE ++ V H L G + ATPK RP
Sbjct: 220 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 268
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 269 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 294
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 295 FSQFGPV 301
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 306 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 354
>gi|226505238|ref|NP_001141380.1| hypothetical protein [Zea mays]
gi|194704250|gb|ACF86209.1| unknown [Zea mays]
gi|413954079|gb|AFW86728.1| hypothetical protein ZEAMMB73_661369 [Zea mays]
Length = 345
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE---DDFRPVGRMSHGG 61
RG GF+TF S D+VE +M + H+LGG V + +A PK+ D GR S GG
Sbjct: 166 RGFGFVTFESEDAVERVMSEGRMHDLGGKQVEIKKAEPKKPGAGDSSSNGRHSRGG 221
>gi|125538654|gb|EAY85049.1| hypothetical protein OsI_06408 [Oryza sativa Indica Group]
Length = 504
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 50/144 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ +K RG GF+TF+ ++ ++ D H + G T+
Sbjct: 208 KDKHTKMPRGFGFVTFSDPSVIDKVLEDEHVIDGRTL----------------------- 244
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ + G+ + D P +KIFVG LP T ++LR +F
Sbjct: 245 -----------KGQSQGSNVIKDGPRP------------RKIFVGGLPSSLTEDELREHF 281
Query: 123 SRFGRILDVYVPKRFWFCHLCGRS 146
S +G+I V + H GRS
Sbjct: 282 SPYGKI----VEHQIMLDHSTGRS 301
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48
D + RG GF+TF S DSVE ++ + +LGG V + +A PK+
Sbjct: 295 DHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPKK 341
>gi|432865306|ref|XP_004070518.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Oryzias latipes]
Length = 329
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T++S V+ M H++ G V RA +ED RP
Sbjct: 46 RDPNSKRSRGFGFVTYSSVQEVDAAMSARPHKVDGRVVEPKRAVSREDSNRP-------- 97
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+I+ KKIFVG + ++ LR Y
Sbjct: 98 ----GAHITV------------------------------KKIFVGGIKEDTEESHLRDY 123
Query: 122 FSRFGRI 128
F +FG+I
Sbjct: 124 FQQFGKI 130
>gi|390364931|ref|XP_787866.3| PREDICTED: uncharacterized protein LOC582835 [Strongylocentrotus
purpuratus]
Length = 667
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 49/133 (36%)
Query: 6 GSKAHRGIGFITFASADSVENLMV----DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
G + RG GF+T+A++ V+ ++ H L G + V RA PKE+ GG
Sbjct: 520 GDRKPRGFGFVTYATSACVDKVIDAKKDSAHVLDGREIDVKRALPKEE----------GG 569
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
S+ K FVG L TAEDL+ Y
Sbjct: 570 -----------------------------------SKESTNKAFVGGLAPGTTAEDLKAY 594
Query: 122 FSRFGRILDVYVP 134
F+ +G + DV +P
Sbjct: 595 FTNYGVVTDVSIP 607
>gi|302780479|ref|XP_002972014.1| hypothetical protein SELMODRAFT_172407 [Selaginella moellendorffii]
gi|302781554|ref|XP_002972551.1| hypothetical protein SELMODRAFT_172861 [Selaginella moellendorffii]
gi|300160018|gb|EFJ26637.1| hypothetical protein SELMODRAFT_172861 [Selaginella moellendorffii]
gi|300160313|gb|EFJ26931.1| hypothetical protein SELMODRAFT_172407 [Selaginella moellendorffii]
Length = 167
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 55/165 (33%), Gaps = 57/165 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+ FA D + ++ D H + G V +A P++
Sbjct: 39 KDRTTGRGRGFGFVVFADPDVADRVVQDKHSINGKLVEAKKAVPRD-------------- 84
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+H + KIFVG L + E+ ++YF
Sbjct: 85 ----------------------EHQNA-------------KIFVGGLAPNVSEEEFKQYF 109
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSKVSRNL 159
+FG I D+ V P+ F F S K L
Sbjct: 110 EQFGNITDIVVMYDHATQRPRGFGFITFDSEEAVDSVLQKTFHEL 154
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
D ++ RG GFITF S ++V++++ T HEL V V RA PK
Sbjct: 123 DHATQRPRGFGFITFDSEEAVDSVLQKTFHELKDKMVEVKRAVPK 167
>gi|296412291|ref|XP_002835858.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629654|emb|CAZ80015.1| unnamed protein product [Tuber melanosporum]
Length = 772
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 43 RATPKEDDFRPVGRMSHG-GYGAYNAYISAATRYAALGAPTLYDH-----PGSFYGRGES 96
R K D P G +S G G+ + + AAL L H P + S
Sbjct: 581 RVKTKPDPKNPGGTLSMGFGFAEFRSKTDGMAAMAALNGYVLDGHKLSIKPSQKHTSPSS 640
Query: 97 SQR--IGK--KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
SQ I K KI + LP EA+ +LR FS +G + V VPK+F
Sbjct: 641 SQEKSIAKRTKIIIKNLPFEASKRELRALFSAYGTLRSVRVPKKF 685
>gi|198417315|ref|XP_002119186.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 157
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFS 153
KIFVG LP E + D+ + F ++G +++ V K + F H+ + +R +
Sbjct: 79 KIFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFVHMGRENMARDAIN 129
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSR 157
KIFVGRLP++ +L F +G I D + K + F H+ + ++ + + +
Sbjct: 3 KIFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFVHMADLNDAKKAIAGLDK 57
>gi|18416906|ref|NP_567764.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75331668|sp|Q93W34.1|RP45C_ARATH RecName: Full=Polyadenylate-binding protein RBP45C;
Short=Poly(A)-binding protein RBP45C; AltName:
Full=RNA-binding protein 45C; Short=AtRBP45C
gi|13878153|gb|AAK44154.1|AF370339_1 putative DNA binding protein [Arabidopsis thaliana]
gi|15450814|gb|AAK96678.1| putative DNA binding protein [Arabidopsis thaliana]
gi|17104569|gb|AAL34173.1| putative DNA binding protein [Arabidopsis thaliana]
gi|20259888|gb|AAM13291.1| putative DNA binding protein [Arabidopsis thaliana]
gi|332659882|gb|AEE85282.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 415
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 27/164 (16%)
Query: 15 FITFASADSVENLMVDTHE-----LGGSTVVVDRAT------------PKEDDFRPVGRM 57
F+ + D ++++ +T + + G+ VV DR T + + R + M
Sbjct: 176 FVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEM 235
Query: 58 SHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY---GRGESSQRIGKKIFVGRLPQEAT 114
+ G Y + T AA P L P S+ G S IFVG + Q T
Sbjct: 236 N----GQYCSSRPMRTGPAANKKP-LTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVT 290
Query: 115 AEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
+DL+ F +FG ++ V +P KR F R+C+ S ++
Sbjct: 291 EDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLN 334
>gi|348521586|ref|XP_003448307.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Oreochromis niloticus]
Length = 332
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T++S V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNSKRSRGFGFVTYSSVQEVDAAMSARPHKVDGRVVEPKRAVSREDSNRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+I+ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHITV------------------------------KKIFVGGIKEDTEESHLRDY 124
Query: 122 FSRFGRI 128
F +FG+I
Sbjct: 125 FQQFGKI 131
>gi|363807276|ref|NP_001242362.1| uncharacterized protein LOC100793209 [Glycine max]
gi|255636483|gb|ACU18580.1| unknown [Glycine max]
Length = 377
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT+A V+ ++ + H + G V + R P+
Sbjct: 75 KDRKTGQPRGFGFITYADPSVVDKVIEEPHVINGKQVEIKRTIPR--------------- 119
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
A+G+ KKIFVG +P T ++ R +F
Sbjct: 120 -------------GAVGSKDFRT----------------KKIFVGGIPSNVTEDEFRDFF 150
Query: 123 SRFGRILD 130
+R+G + D
Sbjct: 151 TRYGEVKD 158
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 3 KDQGSKAHRGIGFITFASADSVENL--MVDTHELGGSTVVVDRATPKEDDFRP 53
+D + RG GFITF S ++V++L M + + G+ V + +A PK+ + P
Sbjct: 163 RDHSTNRSRGFGFITFESEEAVDDLLSMGNKIDFAGAQVEIKKAEPKKPNSAP 215
>gi|21430706|gb|AAM51031.1| RH49436p [Drosophila melanogaster]
Length = 634
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +VE ++ V H L G + ATPK RP
Sbjct: 236 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 284
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 285 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 310
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 311 FSQFGPV 317
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 322 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 370
>gi|28571891|ref|NP_733108.2| musashi, isoform B [Drosophila melanogaster]
gi|386766502|ref|NP_001247303.1| musashi, isoform C [Drosophila melanogaster]
gi|442621134|ref|NP_001262960.1| musashi, isoform F [Drosophila melanogaster]
gi|28381465|gb|AAN14056.2| musashi, isoform B [Drosophila melanogaster]
gi|383292949|gb|AFH06620.1| musashi, isoform C [Drosophila melanogaster]
gi|383505544|gb|AFH36351.1| FI20028p1 [Drosophila melanogaster]
gi|440217893|gb|AGB96340.1| musashi, isoform F [Drosophila melanogaster]
Length = 634
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +VE ++ V H L G + ATPK RP
Sbjct: 236 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 284
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 285 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 310
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 311 FSQFGPV 317
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 322 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 370
>gi|195349467|ref|XP_002041266.1| GM10251 [Drosophila sechellia]
gi|194122961|gb|EDW45004.1| GM10251 [Drosophila sechellia]
Length = 634
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +VE ++ V H L G + ATPK RP
Sbjct: 236 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 284
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 285 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 310
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 311 FSQFGPV 317
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 322 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 370
>gi|194908488|ref|XP_001981778.1| GG11413 [Drosophila erecta]
gi|190656416|gb|EDV53648.1| GG11413 [Drosophila erecta]
Length = 635
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +VE ++ V H L G + ATPK RP
Sbjct: 237 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 285
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 286 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 311
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 312 FSQFGPV 318
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 323 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 371
>gi|297799290|ref|XP_002867529.1| hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp.
lyrata]
gi|297313365|gb|EFH43788.1| hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp.
lyrata]
Length = 418
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 21/158 (13%)
Query: 15 FITFASADSVENLMVDTHE-----LGGSTVVVDRATPKE---------DDFRPVGRMSHG 60
F+ + D ++++ +T + + G+ VV DR T + D+ + M+
Sbjct: 177 FVGDLAPDVTDHMLTETFKAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQIRAMTEM 236
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFY---GRGESSQRIGKKIFVGRLPQEATAED 117
G Y + T AA P L P S+ G S IFVG L Q +D
Sbjct: 237 N-GQYCSSRPMRTGPAANKKP-LTMQPASYQNTQGNQGESDPTNTTIFVGALDQSVIEDD 294
Query: 118 LRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFS 153
L+ F +FG ++ V +P KR F R+C+ S
Sbjct: 295 LKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALS 332
>gi|159163285|pdb|1WF0|A Chain A, Solution Structure Of Rrm Domain In Tar Dna-Binding
Protein- 43
Length = 88
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+FVGR + T ++LR +FS++G ++DV++PK F
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF 41
>gi|154183823|gb|ABS70764.1| Hnrp1 [Haplochromis burtoni]
Length = 289
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T++S V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNSKRSRGFGFVTYSSVQEVDAAMSARPHKVDGRVVEPKRAVSREDSNRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+I+ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHITV------------------------------KKIFVGGIKEDTEESHLRDY 124
Query: 122 FSRFGRI 128
F +FG+I
Sbjct: 125 FQQFGKI 131
>gi|428180523|gb|EKX49390.1| hypothetical protein GUITHDRAFT_68106 [Guillardia theta CCMP2712]
Length = 176
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KIF+GRL EDLR+YF +FG I DV++P
Sbjct: 91 KIFIGRLGDAVEPEDLRQYFEQFGAITDVFMP 122
>gi|313226215|emb|CBY21358.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 43/130 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF A V++ M + H+L G V RA +E+ RP
Sbjct: 45 QDPATKRSRGFGFVTFEKAQMVDDCMSNRPHKLDGREVEAKRAVSREESHRP-------- 96
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G + + K++F+G + + T+ED+ Y
Sbjct: 97 -GIHKSV---------------------------------KRMFMGGIKENVTSEDVTEY 122
Query: 122 FSRFGRILDV 131
F ++G++ V
Sbjct: 123 FEKYGKVESV 132
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D+ S RG GF+ F D V+ ++ H + G ++ V +A KED R G +++ G
Sbjct: 136 QDKASGKKRGFGFVNFDDYDVVDKIVQTRRHVISGVSIEVSKAFSKEDQTRKAGFVNNNG 195
Query: 62 YGAYNAYISA 71
Y Y+A+ A
Sbjct: 196 YYGYDAFAWA 205
>gi|350536139|ref|NP_001234487.1| DNA-binding protein [Solanum lycopersicum]
gi|40804404|gb|AAR91698.1| DNA-binding protein [Solanum lycopersicum]
Length = 428
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVSRNLWT 161
+FVG L E T E+LR+ FS+FG ++ V +P K F RS + K++ +
Sbjct: 298 VFVGGLDSEVTDEELRQSFSQFGNVVSVKIPAGKGCGFVQFSERSAAEDAIEKLNGTVIG 357
Query: 162 AGCNRFS 168
A R S
Sbjct: 358 AQTVRLS 364
>gi|255560757|ref|XP_002521392.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
gi|223539470|gb|EEF41060.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
Length = 412
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED--DFRPVGRM------SHG 60
RG GF+TF + DSVE + THELGG V + +A PK + D+ G+ G
Sbjct: 209 RGFGFVTFETEDSVEQIFSTGRTHELGGKRVEIKKAVPKRNGGDYGSSGKYHTGFSNGAG 268
Query: 61 GYGA 64
GYGA
Sbjct: 269 GYGA 272
>gi|442621136|ref|NP_001262961.1| musashi, isoform H [Drosophila melanogaster]
gi|440217894|gb|AGB96341.1| musashi, isoform H [Drosophila melanogaster]
Length = 567
Score = 43.1 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +VE ++ V H L G + ATPK RP
Sbjct: 169 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 217
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 218 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 243
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 244 FSQFGPV 250
Score = 38.5 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 255 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 303
>gi|47210651|emb|CAF94319.1| unnamed protein product [Tetraodon nigroviridis]
Length = 256
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
KIFVG LP+EA E+++ F+ +G + + + K + F H+ R + +K +NL
Sbjct: 3 KIFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAA----TKAIKNL 55
>gi|313240342|emb|CBY32684.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 43/130 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF A V++ M + H+L G V RA +E+ RP
Sbjct: 45 QDPATKRSRGFGFVTFEKAQMVDDCMSNRPHKLDGREVEAKRAVSREESHRP-------- 96
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G + + K++F+G + + T+ED+ Y
Sbjct: 97 -GIHKSV---------------------------------KRMFMGGIKENVTSEDVTEY 122
Query: 122 FSRFGRILDV 131
F ++G++ V
Sbjct: 123 FEKYGKVESV 132
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D+ S RG GF+ F D V+ ++ H + G ++ V +A KED R G +++ G
Sbjct: 136 QDKASGKKRGFGFVNFDDYDVVDKIVQTRRHVISGVSIEVSKAFSKEDQTRKAGFVNNNG 195
Query: 62 YGAYNAYISA 71
Y Y+A+ A
Sbjct: 196 YYGYDAFAWA 205
>gi|429892786|gb|AGA18938.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 418
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 37 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 91
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 92 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 112
Query: 122 FSRFGRILDVYV 133
F+R+G++ +V +
Sbjct: 113 FNRYGKVTEVVI 124
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FV L E T E+L RYF RFG I+D V K
Sbjct: 5 KLFVYGLSWETTQENLSRYFCRFGDIIDCVVMKN 38
>gi|80477437|gb|AAI08267.1| Heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
Length = 320
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M T H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|328712079|ref|XP_001943947.2| PREDICTED: RNA-binding protein lark-like isoform 1 [Acyrthosiphon
pisum]
Length = 374
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVS 156
KIF+G L ++ T+ D+R F ++G++++ V K F F H+ + R+ ++
Sbjct: 51 KIFIGNLSEKTTSSDIRPLFEKYGKVVECDVMKNFGFVHMDDDTTGRAAIKALN 104
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSR 149
KIFVG L + A ++R F R+G +++ + + + F H+ SR
Sbjct: 130 KIFVGNLSETTKANEVRELFGRYGTVVECDIVRTYGFVHIDSTDVSR 176
>gi|429892774|gb|AGA18932.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 417
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 36 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 90
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 91 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 111
Query: 122 FSRFGRILDVYV 133
F+R+G++ +V +
Sbjct: 112 FNRYGKVTEVVI 123
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 4 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 37
>gi|367007988|ref|XP_003688723.1| hypothetical protein TPHA_0P01310 [Tetrapisispora phaffii CBS 4417]
gi|357527033|emb|CCE66289.1| hypothetical protein TPHA_0P01310 [Tetrapisispora phaffii CBS 4417]
Length = 518
Score = 43.1 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF+TF +A SV+ ++ H L G + RA P+E+ + G++ GG
Sbjct: 197 KDNNTGRSRGFGFLTFENASSVDEVVKTQHILDGKVIDPKRAIPREEQDK-TGKIFVGGI 255
Query: 63 GA 64
GA
Sbjct: 256 GA 257
>gi|357465449|ref|XP_003603009.1| RNA-binding protein [Medicago truncatula]
gi|355492057|gb|AES73260.1| RNA-binding protein [Medicago truncatula]
Length = 420
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
IFVG L ATAEDLR+ FS++G I+ V +P K F R+ + K++
Sbjct: 294 IFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLN 348
>gi|255554923|ref|XP_002518499.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223542344|gb|EEF43886.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 430
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 15 FITFASADSVENLMVDTH-----ELGGSTVVVDRAT------------PKEDDFRPVGRM 57
F+ +AD + ++ DT + G+ VV+DR T + + R + M
Sbjct: 184 FVGDLAADVTDYILQDTFRVHYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTDM 243
Query: 58 SHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKK--------IFVGRL 109
+ I AT A+ T +P + Y ++SQ G+ IFVG L
Sbjct: 244 NGAFCSTRPMRIGLATNKNAV---TGQQYPKASY---QNSQTQGENENDPNNTTIFVGNL 297
Query: 110 PQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCF 152
T ++LR F R+G++L V +P KR F RSC+
Sbjct: 298 DSNVTDDNLRELFGRYGQLLHVKIPAGKRCGFVQFADRSCAEEAL 342
>gi|119572425|gb|EAW52040.1| heterogeneous nuclear ribonucleoprotein A1-like, isoform CRA_a
[Homo sapiens]
Length = 309
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M T H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|4455223|emb|CAB36546.1| putative DNA binding protein [Arabidopsis thaliana]
gi|7269553|emb|CAB79555.1| putative DNA binding protein [Arabidopsis thaliana]
Length = 427
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 15 FITFASADSVENLMVDTHE-----LGGSTVVVDRATPKE---------DDFRPVGRMSHG 60
F+ + D ++++ +T + + G+ VV DR T + D+ + M+
Sbjct: 176 FVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEM 235
Query: 61 GYGAYNAYISAATRYAALGAPTLYDHPGSFY---GRGESSQRIGKKIFVGRLPQEATAED 117
G Y + T AA P L P S+ G S IFVG + Q T +D
Sbjct: 236 N-GQYCSSRPMRTGPAANKKP-LTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 118 LRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
L+ F +FG ++ V +P KR F R+C+ S ++
Sbjct: 294 LKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLN 334
>gi|321461997|gb|EFX73024.1| hypothetical protein DAPPUDRAFT_32116 [Daphnia pulex]
Length = 185
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TFA A SV+ ++ HEL G + A P+
Sbjct: 35 KDPTTRRSRGFGFVTFADAASVDKVLASAPHELDGKKIDPKVAFPR-------------- 80
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KKIFVG L +T +D++ Y
Sbjct: 81 ----RAHPKMVTRT--------------------------KKIFVGGLSAPSTVDDVKGY 110
Query: 122 FSRFGRILDVYV 133
F +FGR+ D +
Sbjct: 111 FEQFGRVEDAML 122
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+K+F+G L + +AE LR YFS+FG + +V V K
Sbjct: 2 RKMFIGGLSWQTSAEGLREYFSKFGDVTEVMVMK 35
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG F+TF S D V+ + + HE+ V +A PKE
Sbjct: 125 DKQTNRHRGFAFVTFESEDVVDKVCEIHFHEINNKMVECKKAQPKE 170
>gi|269914213|gb|ACZ52626.1| MIP15164p [Drosophila melanogaster]
Length = 578
Score = 43.1 bits (100), Expect = 0.044, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +VE ++ V H L G + ATPK RP
Sbjct: 180 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 228
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 229 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 254
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 255 FSQFGPV 261
Score = 38.5 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 266 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 314
>gi|6729004|gb|AAF27001.1|AC016827_12 putative RNA-binding protein [Arabidopsis thaliana]
Length = 272
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KIFVG L TA+DLRRYF +FG+++D V
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANV 43
>gi|291243889|ref|XP_002741832.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like
[Saccoglossus kowalevskii]
Length = 398
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GFIT+ A V++ M H++ G V RA +E+ P+ M
Sbjct: 46 KDPNTKKSRGFGFITYKRASMVDDAMRSRPHKIDGREVEPKRAVAREESGNPLAHM---- 101
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
+ KKIFVG + ++ + + LR Y
Sbjct: 102 --------------------------------------LVKKIFVGGIKEDTSEDHLRDY 123
Query: 122 FSRFGRILDVYV 133
FS++G I V V
Sbjct: 124 FSKYGSIESVDV 135
>gi|357613325|gb|EHJ68436.1| bmp-2 protein [Danaus plexippus]
Length = 366
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTA 162
K+FVG LPQ + EDLR+ F RFG + + + R F H+ + + ++ + +
Sbjct: 6 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEDQASAAIRALNNSSFNG 65
Query: 163 GC 164
G
Sbjct: 66 GV 67
>gi|326926670|ref|XP_003209521.1| PREDICTED: hypothetical protein LOC100540496 [Meleagris gallopavo]
Length = 304
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 99 RIGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVPKRFWFCHL 142
R G K+FVG +P+EATAE+L FS G +L + + K+F F HL
Sbjct: 62 RPGIKLFVGNVPEEATAEELSELFSGAAGPVLGIALMKQFAFVHL 106
>gi|339243191|ref|XP_003377521.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316973670|gb|EFV57234.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 231
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
D+ + HRG GFITF + D VE ++ + HE+ G V +A PKE
Sbjct: 40 DKSTNRHRGFGFITFDNEDVVEKVVEIHFHEINGKMVECKKAQPKE 85
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILD 130
KKIFVG L T ED++ YF+++GRI D
Sbjct: 6 KKIFVGGLSASTTLEDMKNYFTQYGRIED 34
>gi|145338212|ref|NP_187353.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|91806393|gb|ABE65924.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332640961|gb|AEE74482.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 317
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KIFVG L TA+DLRRYF +FG+++D V
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANV 43
>gi|443705196|gb|ELU01851.1| hypothetical protein CAPTEDRAFT_169740 [Capitella teleta]
Length = 186
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSV-ENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D ++ RG GFIT+ +A+SV E H + V RA P+ED RP MS
Sbjct: 2 RDPMTRRSRGFGFITYKTAESVDEAQKARPHTIDKRQVEPKRAVPREDSGRPEAHMS--- 58
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + ++ T LR Y
Sbjct: 59 ---------------------------------------LKKIFVGGIKEDTTEAHLREY 79
Query: 122 FSRFGRILDVYV 133
FS +G I + +
Sbjct: 80 FSEYGPIESIDI 91
>gi|429892784|gb|AGA18937.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 39 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 94 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 114
Query: 122 FSRFGRILDVYV 133
F+R+G++ +V +
Sbjct: 115 FNRYGKVTEVVI 126
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 7 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 40
>gi|58761496|ref|NP_001011724.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
gi|58761498|ref|NP_001011725.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
gi|190356061|sp|Q32P51.2|RA1L2_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A1-like 2;
Short=hnRNP A1-like 2; AltName: Full=hnRNP core protein
A1-like 2
gi|119572426|gb|EAW52041.1| heterogeneous nuclear ribonucleoprotein A1-like, isoform CRA_b
[Homo sapiens]
gi|119572427|gb|EAW52042.1| heterogeneous nuclear ribonucleoprotein A1-like, isoform CRA_b
[Homo sapiens]
Length = 320
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M T H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|429892778|gb|AGA18934.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F+R+G++ +V +
Sbjct: 116 FNRYGKVTEVVI 127
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|294897114|ref|XP_002775830.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239882183|gb|EER07646.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 323
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 32/122 (26%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 68
RG GF+T+++ D VE +++ H+L G V V+R+ +D R GG+G+
Sbjct: 119 RGFGFVTYSTTDEVEVVIMKGGPHQLNGKRVDVNRSQDPKDPHR-------GGWGS---- 167
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
D G RG K+F G L ++E LR++FS++G I
Sbjct: 168 ----------------DRSGGPSRRGGDDP---MKVFCGGLQSTLSSERLRQHFSQYGNI 208
Query: 129 LD 130
+D
Sbjct: 209 VD 210
>gi|189234126|ref|XP_969016.2| PREDICTED: similar to mammalian A1, A2 /B1 hnRNP homologue
[Tribolium castaneum]
gi|270002487|gb|EEZ98934.1| hypothetical protein TcasGA2_TC004556 [Tribolium castaneum]
Length = 338
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 49/128 (38%), Gaps = 43/128 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GFIT++ A V++ D H++ G V RA P++D RP
Sbjct: 52 KDPTTKRSRGFGFITYSRAHMVDDAQNDRPHKVDGRVVEPKRAVPRQDIGRP-------- 103
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
GA KK+FVG L + EDLR
Sbjct: 104 ---------------EAGATV-------------------KKLFVGGLKDDVEEEDLREC 129
Query: 122 FSRFGRIL 129
F +G IL
Sbjct: 130 FKSYGTIL 137
>gi|115629158|ref|XP_779906.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A2 homolog
1-like isoform 1 [Strongylocentrotus purpuratus]
Length = 360
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 58/151 (38%), Gaps = 51/151 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM----VDTHELGGSTVVVDRATPKEDDFRPVGRMS 58
KD S +G GF+TFAS V +M + H L V V RA M+
Sbjct: 46 KDPTSLKSKGFGFVTFASRKEVNKVMGARKENPHRLDNRAVDVRRA------------MA 93
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDL 118
G N P+ K FVG +P+E T E+L
Sbjct: 94 RDEKGPKN--------------PSF-------------------KCFVGGIPKETTEEEL 120
Query: 119 RRYFSRFGRILD--VYVPKRFWFCHLCGRSC 147
R YFS+FG+I++ +++ K F F C
Sbjct: 121 RAYFSQFGQIVELALHLSKGFSFITYDDTDC 151
>gi|195504299|ref|XP_002099019.1| GE23609 [Drosophila yakuba]
gi|194185120|gb|EDW98731.1| GE23609 [Drosophila yakuba]
Length = 637
Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +VE ++ V H L G + ATPK RP
Sbjct: 239 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 287
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 288 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 313
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 314 FSQFGPV 320
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 325 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 373
>gi|429892776|gb|AGA18933.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F+R+G++ +V +
Sbjct: 116 FNRYGKVTEVVI 127
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|429892772|gb|AGA18931.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 39 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 94 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 114
Query: 122 FSRFGRILDVYV 133
F+R+G++ +V +
Sbjct: 115 FNRYGKVTEVVI 126
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 7 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 40
>gi|17136728|ref|NP_476869.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform A
[Drosophila melanogaster]
gi|24582366|ref|NP_723228.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform B
[Drosophila melanogaster]
gi|24582368|ref|NP_723229.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform C
[Drosophila melanogaster]
gi|281364530|ref|NP_001162897.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform D
[Drosophila melanogaster]
gi|281364532|ref|NP_001162898.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform E
[Drosophila melanogaster]
gi|386769237|ref|NP_001245917.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform F
[Drosophila melanogaster]
gi|386769239|ref|NP_001245918.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform G
[Drosophila melanogaster]
gi|386769241|ref|NP_001245919.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform H
[Drosophila melanogaster]
gi|76803817|sp|P48809.2|RB27C_DROME RecName: Full=Heterogeneous nuclear ribonucleoprotein 27C;
Short=Hrb27-C; AltName: Full=HRP48.1; AltName:
Full=hnRNP 48
gi|7297190|gb|AAF52456.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform A
[Drosophila melanogaster]
gi|7297191|gb|AAF52457.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform B
[Drosophila melanogaster]
gi|17862734|gb|AAL39844.1| LD46853p [Drosophila melanogaster]
gi|21711665|gb|AAM75023.1| GH26816p [Drosophila melanogaster]
gi|22945819|gb|AAN10605.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform C
[Drosophila melanogaster]
gi|66804007|gb|AAY56657.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
gi|272406922|gb|ACZ94188.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform D
[Drosophila melanogaster]
gi|272406923|gb|ACZ94189.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform E
[Drosophila melanogaster]
gi|383291369|gb|AFH03591.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform F
[Drosophila melanogaster]
gi|383291370|gb|AFH03592.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform G
[Drosophila melanogaster]
gi|383291371|gb|AFH03593.1| heterogeneous nuclear ribonucleoprotein at 27C, isoform H
[Drosophila melanogaster]
Length = 421
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F+R+G++ +V +
Sbjct: 116 FNRYGKVTEVVI 127
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|383851133|ref|XP_003701094.1| PREDICTED: RNA-binding protein squid-like isoform 1 [Megachile
rotundata]
Length = 338
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KRFWFCHLC 143
KIFVG L E + ED++ +FS+FG I+DV +P +R FC +
Sbjct: 135 KIFVGGLSTELSDEDIKNFFSQFGTIVDVEMPFDKTKNQRKGFCFIT 181
>gi|339522327|gb|AEJ84328.1| RNA-binding protein 4 [Capra hircus]
Length = 143
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCH 141
K+F+G LP+EAT +++R F ++G++L+ + K F H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVH 41
>gi|193575575|ref|XP_001951661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 87F-like
[Acyrthosiphon pisum]
Length = 303
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 44/132 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GFIT++ A V++ M + H++ G V RA P++D
Sbjct: 51 KDPVTKRSRGFGFITYSKASMVDDAMANRPHKIDGREVETKRAVPRDD------------ 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
D P + KK+FV + ++A EDL+ Y
Sbjct: 99 ----------------------IDKPDIAW--------TVKKMFVSGIKEQA-EEDLKEY 127
Query: 122 FSRFGRILDVYV 133
F ++G IL++ +
Sbjct: 128 FGQYGNILNIQI 139
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKE 48
D+ + +G GFI F +DSV+ +++ THE+ GS + V +A K+
Sbjct: 142 DKETGQRKGFGFIEFDDSDSVDKAVLIKTHEVSGSKLEVKKAVSKD 187
>gi|429892782|gb|AGA18936.1| heterogeneous nuclear ribonucleoprotein, partial [Drosophila
melanogaster]
Length = 420
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 39 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 94 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 114
Query: 122 FSRFGRILDVYV 133
F+R+G++ +V +
Sbjct: 115 FNRYGKVTEVVI 126
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FV L E T E+L RYF RFG I+D V K
Sbjct: 7 KLFVDGLSWETTQENLSRYFCRFGDIIDCVVMKN 40
>gi|429892780|gb|AGA18935.1| heterogeneous nuclear ribonucleoprotein [Drosophila melanogaster]
Length = 421
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F+R+G++ +V +
Sbjct: 116 FNRYGKVTEVVI 127
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|339243331|ref|XP_003377591.1| paraspeckle component 1 [Trichinella spiralis]
gi|316973596|gb|EFV57164.1| paraspeckle component 1 [Trichinella spiralis]
Length = 461
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-FWFCHLCGRSCSRSCFSKV 155
++F+G LPQ+ T E+LR FS+FG + + ++ ++ F F + R + K+
Sbjct: 58 RLFIGNLPQDTTEEELRELFSKFGELSECFISRKGFAFVRMANRPSAERAKEKL 111
>gi|114053173|ref|NP_001040506.1| bmp-2 protein [Bombyx mori]
gi|98990265|gb|ABF60228.1| bmp-2 [Bombyx mori]
Length = 297
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTA 162
K+FVG LPQ + EDLR+ F RFG + + + R F H+ + + + + +
Sbjct: 6 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNG 65
Query: 163 GC 164
G
Sbjct: 66 GV 67
>gi|254566735|ref|XP_002490478.1| Subunit of cleavage factor I [Komagataella pastoris GS115]
gi|238030274|emb|CAY68197.1| Subunit of cleavage factor I [Komagataella pastoris GS115]
gi|328350869|emb|CCA37269.1| Nuclear polyadenylated RNA-binding protein 4 [Komagataella pastoris
CBS 7435]
Length = 462
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 48/131 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF SV+ ++ H L G + RA P+E+
Sbjct: 186 RDNATGRSRGFGFLTFTKTASVDEVLKKQHVLDGKLIDPKRAIPREE------------- 232
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+ GK IFVG + E T ED YF
Sbjct: 233 ----------------------------------QDKTGK-IFVGGIAAEVTEEDFTDYF 257
Query: 123 SRFGRILDVYV 133
S+FG I+D +
Sbjct: 258 SQFGTIIDAQL 268
>gi|220942596|gb|ACL83841.1| msi-PA [synthetic construct]
Length = 607
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +VE ++ V H L G + ATPK RP
Sbjct: 208 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 256
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 257 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 282
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 283 FSQFGPV 289
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 294 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 342
>gi|17864096|ref|NP_524577.1| musashi, isoform A [Drosophila melanogaster]
gi|541667|emb|CAA55897.1| musashi [Drosophila melanogaster]
gi|15291915|gb|AAK93226.1| LD31631p [Drosophila melanogaster]
gi|23172305|gb|AAF56478.2| musashi, isoform A [Drosophila melanogaster]
Length = 606
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +VE ++ V H L G + ATPK RP
Sbjct: 208 KDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 256
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 257 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 282
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 283 FSQFGPV 289
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 294 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 342
>gi|41054387|ref|NP_955999.1| RNA-binding protein 4.1 [Danio rerio]
gi|28277979|gb|AAH46057.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRS 146
KIFVG L TAE++R FS++G+I + + K F F H+ +S
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKS 46
>gi|62511030|sp|Q6IQ97.1|RBM41_DANRE RecName: Full=RNA-binding protein 4.1; AltName: Full=RNA-binding
motif protein 4.1
gi|47940417|gb|AAH71513.1| RNA binding motif protein 4.1 [Danio rerio]
gi|160774000|gb|AAI55176.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRS 146
KIFVG L TAE++R FS++G+I + + K F F H+ +S
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKS 46
>gi|390331826|ref|XP_003723361.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2 homolog
1-like [Strongylocentrotus purpuratus]
Length = 330
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 58/151 (38%), Gaps = 51/151 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM----VDTHELGGSTVVVDRATPKEDDFRPVGRMS 58
KD S +G GF+TFAS V +M + H L V V RA M+
Sbjct: 55 KDPTSLKSKGFGFVTFASRKEVNKVMGARKENPHRLDNRAVDVRRA------------MA 102
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDL 118
G N P+ K FVG +P+E T E+L
Sbjct: 103 RDEKGPKN--------------PSF-------------------KCFVGGIPKETTEEEL 129
Query: 119 RRYFSRFGRILD--VYVPKRFWFCHLCGRSC 147
R YFS+FG+I++ +++ K F F C
Sbjct: 130 RAYFSQFGQIVELALHLSKGFSFITYDDTDC 160
>gi|148235767|ref|NP_001085690.1| MGC80472 protein [Xenopus laevis]
gi|49255990|gb|AAH73203.1| MGC80472 protein [Xenopus laevis]
Length = 336
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
K+FVG LP EAT +L+ F +FGR+ + + K + F H+ R +
Sbjct: 3 KLFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMDDRKAA 48
>gi|421097656|ref|ZP_15558336.1| hypothetical protein LEP1GSC125_0543 [Leptospira borgpetersenii
str. 200901122]
gi|410799206|gb|EKS01286.1| hypothetical protein LEP1GSC125_0543 [Leptospira borgpetersenii
str. 200901122]
Length = 121
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 2 KISVGNLPQELTEDELKKIFSEFGTVQEVHIKKD----KTTGRSLS 43
>gi|11042|emb|CAA44505.1| hrp48.1 [Drosophila melanogaster]
Length = 385
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F+R+G++ +V +
Sbjct: 116 FNRYGKVTEVVI 127
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|390331824|ref|XP_003723360.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2 homolog
1-like [Strongylocentrotus purpuratus]
Length = 360
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 58/151 (38%), Gaps = 51/151 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM----VDTHELGGSTVVVDRATPKEDDFRPVGRMS 58
KD S +G GF+TFAS V +M + H L V V RA M+
Sbjct: 46 KDPTSLKSKGFGFVTFASRKEVNKVMGARKENPHRLDNRAVDVRRA------------MA 93
Query: 59 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDL 118
G N P+ K FVG +P+E T E+L
Sbjct: 94 RDEKGPKN--------------PSF-------------------KCFVGGIPKETTEEEL 120
Query: 119 RRYFSRFGRILD--VYVPKRFWFCHLCGRSC 147
R YFS+FG+I++ +++ K F F C
Sbjct: 121 RAYFSQFGQIVELALHLSKGFSFITYDDTDC 151
>gi|328716895|ref|XP_001948178.2| PREDICTED: RNA-binding protein lark-like [Acyrthosiphon pisum]
Length = 376
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVS 156
KIF+G L ++ T+ D+R F ++G++++ V K F F H+ + R+ ++
Sbjct: 51 KIFIGNLSEKTTSSDIRPLFEKYGKVVECDVMKNFGFVHMDDDTTGRAAIKALN 104
>gi|225428741|ref|XP_002285031.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 416
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
IFVG L E T EDLR+ FS+FG ++ V +P K F R+ + +++
Sbjct: 297 IFVGGLDSEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRNSAEDALQRLN 351
>gi|440586615|emb|CCK33029.1| RRM domain protein Musashi [Platynereis dumerilii]
Length = 205
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 41/132 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A SV+ ++ + HEL + A P+ RP
Sbjct: 56 RDPITKRSRGFGFVTYADPGSVDKVLANGPHELDTKLIDPKLAFPR----RP-------- 103
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
AT+ + T KKIFVG L T ED+++Y
Sbjct: 104 ---------NATQQPKMVTRT-------------------KKIFVGGLSASTTLEDVKQY 135
Query: 122 FSRFGRILDVYV 133
FS+FG+I D +
Sbjct: 136 FSQFGKIEDAML 147
>gi|410906771|ref|XP_003966865.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 416
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
KIF+G L E T++++R FS++G+I + + K F F H+
Sbjct: 3 KIFIGNLASETTSDEIRSLFSQYGKIAECTIVKNFGFVHM 42
>gi|421091647|ref|ZP_15552412.1| hypothetical protein LEP1GSC131_2854 [Leptospira kirschneri str.
200802841]
gi|421108364|ref|ZP_15568904.1| hypothetical protein LEP1GSC082_3169 [Leptospira kirschneri str.
H2]
gi|409999392|gb|EKO50083.1| hypothetical protein LEP1GSC131_2854 [Leptospira kirschneri str.
200802841]
gi|410006630|gb|EKO60381.1| hypothetical protein LEP1GSC082_3169 [Leptospira kirschneri str.
H2]
Length = 121
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 2 KISVGNLPQELTEDELKKIFSEFGTVQEVHIKK----DKTTGRSLS 43
>gi|116788528|gb|ABK24911.1| unknown [Picea sitchensis]
Length = 397
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGK-----------KIFVGRLPQEATAED 117
I+ AT +LG Y G++Y + G+ IFVG L AT ED
Sbjct: 219 INEATPKKSLGLQQSYSMKGNYYTQAYGGAVAGQGFQSDNDPNNTTIFVGGLDPNATDED 278
Query: 118 LRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKV 155
LR+ F FG I+ V +P K F RS + K+
Sbjct: 279 LRQVFGPFGEIVYVKIPVGKGCGFVQFTNRSSAEEALQKL 318
>gi|398338873|ref|ZP_10523576.1| RNA-binding protein [Leptospira kirschneri serovar Bim str. 1051]
gi|418676923|ref|ZP_13238201.1| hypothetical protein LEP1GSC044_1926 [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418687871|ref|ZP_13249028.1| hypothetical protein LEP1GSC064_4054 [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418695099|ref|ZP_13256125.1| hypothetical protein LEP1GSC081_3619 [Leptospira kirschneri str.
H1]
gi|418742675|ref|ZP_13299045.1| hypothetical protein LEP1GSC122_3581 [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421130710|ref|ZP_15590902.1| hypothetical protein LEP1GSC018_2687 [Leptospira kirschneri str.
2008720114]
gi|400322823|gb|EJO70679.1| hypothetical protein LEP1GSC044_1926 [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|409957258|gb|EKO16173.1| hypothetical protein LEP1GSC081_3619 [Leptospira kirschneri str.
H1]
gi|410357813|gb|EKP05018.1| hypothetical protein LEP1GSC018_2687 [Leptospira kirschneri str.
2008720114]
gi|410737295|gb|EKQ82036.1| hypothetical protein LEP1GSC064_4054 [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410750050|gb|EKR07033.1| hypothetical protein LEP1GSC122_3581 [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 131
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 12 KISVGNLPQELTEDELKKIFSEFGTVQEVHIKK----DKTTGRSLS 53
>gi|365986410|ref|XP_003670037.1| hypothetical protein NDAI_0D04810 [Naumovozyma dairenensis CBS 421]
gi|343768806|emb|CCD24794.1| hypothetical protein NDAI_0D04810 [Naumovozyma dairenensis CBS 421]
Length = 626
Score = 42.7 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
K IFVG+LPQE T EDL +F + G+ILD+
Sbjct: 277 KSIFVGQLPQETTKEDLETHFWKHGKILDL 306
>gi|255726600|ref|XP_002548226.1| hypothetical protein CTRG_02523 [Candida tropicalis MYA-3404]
gi|240134150|gb|EER33705.1| hypothetical protein CTRG_02523 [Candida tropicalis MYA-3404]
Length = 472
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 48/128 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF+TF SV+ L+ D H L G + RA KED
Sbjct: 176 KDNATGRSRGFGFLTFKDPASVDALLKDRHILDGKLIDPKRAISKED------------- 222
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
+++G KIF+G + T ++ +F
Sbjct: 223 ----------------------------------QEKVG-KIFIGGIDPMVTEQEFDEFF 247
Query: 123 SRFGRILD 130
S+FG+I+D
Sbjct: 248 SQFGKIID 255
>gi|328712077|ref|XP_003244723.1| PREDICTED: RNA-binding protein lark-like isoform 2 [Acyrthosiphon
pisum]
Length = 389
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVS 156
KIF+G L ++ T+ D+R F ++G++++ V K F F H+ + R+ ++
Sbjct: 51 KIFIGNLSEKTTSSDIRPLFEKYGKVVECDVMKNFGFVHMDDDTTGRAAIKALN 104
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSR 149
KIFVG L + A ++R F R+G +++ + + + F H+ SR
Sbjct: 130 KIFVGNLSETTKANEVRELFGRYGTVVECDIVRTYGFVHIDSTDVSR 176
>gi|45361253|ref|NP_989204.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|38648979|gb|AAH63354.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|89272511|emb|CAJ82586.1| RNA binding motif protein 4 [ [Xenopus (Silurana) tropicalis]
Length = 338
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
K+FVG LP EAT +L+ F +FGR+ + + K + F H+ R +
Sbjct: 3 KLFVGNLPPEATQSELKSLFEQFGRVTECDIIKNYGFVHMEDRKAA 48
>gi|357124087|ref|XP_003563738.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like isoform 2 [Brachypodium distachyon]
Length = 354
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47
RG GF+TF S D+VE +M + H+LGG V + RA PK
Sbjct: 157 RGFGFVTFESEDAVERVMSEGRMHDLGGKQVEIKRAEPK 195
>gi|444722852|gb|ELW63526.1| RNA-binding protein 4 [Tupaia chinensis]
Length = 131
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
K+F+G LP+E T +++R F ++G++L + K + F H+
Sbjct: 3 KLFIGNLPRETTEQEMRSLFEQYGKVLGCGIIKNYGFVHI 42
>gi|242016703|ref|XP_002428887.1| Ras-GTPase-activating protein-binding protein, putative [Pediculus
humanus corporis]
gi|212513655|gb|EEB16149.1| Ras-GTPase-activating protein-binding protein, putative [Pediculus
humanus corporis]
Length = 506
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
++F+G LP +AT EDLR FS+FG I+D+ +
Sbjct: 329 QLFMGNLPLDATEEDLREIFSKFGNIVDLRI 359
>gi|357618214|gb|EHJ71282.1| hypothetical protein KGM_11355 [Danaus plexippus]
Length = 297
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 47/129 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF A SV+ ++ V H L G + ATPK
Sbjct: 63 KDPVTQRSRGFGFITFQEAASVDKVLAVPVHTLDGKRIDPKHATPK-------------- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
+A A T KKIFVG + Q+ +A+++R Y
Sbjct: 109 ----SAPKPAKT----------------------------KKIFVGGVGQDTSADEVRAY 136
Query: 122 FSRFGRILD 130
F++FG + D
Sbjct: 137 FAQFGAVED 145
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF S ++VE + + H + V RA PKE
Sbjct: 148 MLMDQQTKRHRGFGFVTFHSEEAVERVCDIHFHTIKNKKVECKRAQPKE 196
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+FVG L + ++E LR YF+ FG + DV + K
Sbjct: 31 KLFVGGLSWQTSSEKLREYFAMFGAVTDVLIMK 63
>gi|224110618|ref|XP_002315580.1| predicted protein [Populus trichocarpa]
gi|222864620|gb|EEF01751.1| predicted protein [Populus trichocarpa]
Length = 459
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 56/156 (35%), Gaps = 52/156 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED--------DFRPV 54
KD+ + RG GF+ FA ++ ++ D H + G V RA +E+ + P
Sbjct: 39 KDKTTGRPRGFGFVVFADPAVLDMVLQDKHTIDGRMVEAKRALSREEQQTNARAGNLNPA 98
Query: 55 GRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEAT 114
S GG + R KKIFVG LP T
Sbjct: 99 RNTSGGG-----------------------------------NIRT-KKIFVGGLPPTLT 122
Query: 115 AEDLRRYFSRFGRILDVYV--------PKRFWFCHL 142
+ R+YF FG + DV + P+ F F
Sbjct: 123 EDGFRQYFEAFGFVADVVIMYDQSTQRPRGFGFISF 158
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFI+F + D+V+ ++ + H+L G V V RA PKE
Sbjct: 144 DQSTQRPRGFGFISFDTEDAVDRVLQRSFHDLNGKQVEVKRALPKE 189
>gi|198419269|ref|XP_002128579.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 336
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVS 156
KIFVG LP E + D+ + F ++G +++ V K + F H+ + +R + ++
Sbjct: 79 KIFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFVHMGRENMARDAINGLN 132
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSR 157
KIFVGRLP++ +L F +G I D + K + F H+ + ++ + + +
Sbjct: 3 KIFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFVHMADLNDAKKAIAGLDK 57
>gi|456825005|gb|EMF73401.1| hypothetical protein LEP1GSC148_1225 [Leptospira interrogans
serovar Canicola str. LT1962]
Length = 98
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 12 KISVGNLPQELTEDELKKIFSEFGTVEEVHIKKD----KTTGRSLS 53
>gi|410940631|ref|ZP_11372434.1| hypothetical protein LEP1GSC041_4407 [Leptospira noguchii str.
2006001870]
gi|410784258|gb|EKR73246.1| hypothetical protein LEP1GSC041_4407 [Leptospira noguchii str.
2006001870]
Length = 131
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 12 KISVGNLPQELTEDELKKIFSEFGTVQEVHIKK----DKTTGRSLS 53
>gi|148664549|gb|EDK96965.1| mCG123153 [Mus musculus]
Length = 153
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 51/149 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV-------PKR-FWFCHL 142
F ++G+I + + KR F FC+L
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFCYL 153
>gi|116328543|ref|YP_798263.1| RNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116331283|ref|YP_801001.1| RNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116121287|gb|ABJ79330.1| RNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116124972|gb|ABJ76243.1| RNA binding protein [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 121
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 2 KISVGNLPQELTEDELKKIFSEFGTVQEVHIKK----DKTTGRSLS 43
>gi|383851135|ref|XP_003701095.1| PREDICTED: RNA-binding protein squid-like isoform 2 [Megachile
rotundata]
Length = 362
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KRFWFCHLC 143
KIFVG L E + ED++ +FS+FG I+DV +P +R FC +
Sbjct: 135 KIFVGGLSTELSDEDIKNFFSQFGTIVDVEMPFDKTKNQRKGFCFIT 181
>gi|358388987|gb|EHK26580.1| hypothetical protein TRIVIDRAFT_77860 [Trichoderma virens Gv29-8]
Length = 525
Score = 42.4 bits (98), Expect = 0.062, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 49/129 (37%), Gaps = 40/129 (31%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTV-VVDRATPKEDDFRPVGRMSHGG 61
+D S RG GF+TF +V +MV H L G V ++ P D R + R
Sbjct: 145 RDSSSGRSRGFGFLTFKDPKTVNIVMVKEHFLDGKIVSLLPCHNPCIDPKRAIPR----- 199
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
Q KIFVG + Q+ T ++ R Y
Sbjct: 200 ----------------------------------DEQEKTSKIFVGGVSQDTTDQEFREY 225
Query: 122 FSRFGRILD 130
F++FGR++D
Sbjct: 226 FAQFGRVVD 234
>gi|297741313|emb|CBI32444.3| unnamed protein product [Vitis vinifera]
Length = 342
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
IFVG L E T EDLR+ FS+FG ++ V +P K F R+ + +++
Sbjct: 223 IFVGGLDSEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRNSAEDALQRLN 277
>gi|392563464|gb|EIW56643.1| hypothetical protein TRAVEDRAFT_128184 [Trametes versicolor
FP-101664 SS1]
Length = 216
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 49/131 (37%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+DQ ++ RG F+TF SV +M H L G T+ RA P+E+ R
Sbjct: 47 RDQDGRS-RGFAFLTFKEPASVNAVMCREHVLDGKTIDPKRAIPREEHLR---------- 95
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
TRY FVG L T+E +R +F
Sbjct: 96 ---------NTRY-----------------------------FVGGLSHSTTSESMRTFF 117
Query: 123 SRFGRILDVYV 133
S++G+++D V
Sbjct: 118 SQYGKVVDCTV 128
>gi|403166701|ref|XP_003326577.2| hypothetical protein PGTG_07555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166678|gb|EFP82158.2| hypothetical protein PGTG_07555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 258
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCH 141
G++I+VGR+P +A+ D+ +YF R+G ++DV + F F
Sbjct: 5 GRRIYVGRIPPDASRTDVEKYFGRYGTLMDVRIMAGFGFLE 45
>gi|340377277|ref|XP_003387156.1| PREDICTED: TAR DNA-binding protein 43-like [Amphimedon
queenslandica]
Length = 374
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 103 KIFVGRLPQ--EATAEDLRRYFSRFGRILDVYVPKRF 137
K F+G LP E T E+LR YFS++G + DVY+PK +
Sbjct: 220 KFFIGCLPSDPETTTEELRAYFSQYGSLSDVYIPKPY 256
>gi|307170451|gb|EFN62721.1| Heterogeneous nuclear ribonucleoprotein 27C [Camponotus floridanus]
Length = 275
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+F+G LP T DLR YF+RFG++++V +
Sbjct: 60 KVFLGGLPSNVTETDLRSYFTRFGKVMEVVI 90
>gi|89130657|gb|AAI14332.1| Dazap1 protein [Danio rerio]
Length = 384
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GFITF + SV+ + + H++ G V V +A P++ G++ +G A I
Sbjct: 154 RGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEPRDSKAPAPGQLGANQWGP-RAII 212
Query: 70 SAATRYAALGAPT 82
SAA +AA APT
Sbjct: 213 SAANGWAAQPAPT 225
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSK 154
K+FVG L T E LR YFS++G ++D + K F F +C R+
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 155 VSRNL 159
NL
Sbjct: 72 KPHNL 76
>gi|359727804|ref|ZP_09266500.1| RNA binding protein [Leptospira weilii str. 2006001855]
gi|417779907|ref|ZP_12427683.1| hypothetical protein LEP1GSC036_2755 [Leptospira weilii str.
2006001853]
gi|410779876|gb|EKR64479.1| hypothetical protein LEP1GSC036_2755 [Leptospira weilii str.
2006001853]
Length = 121
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 2 KISVGNLPQELTEDELKKIFSEFGTVQEVHIKK----DKTTGRSLS 43
>gi|209154614|gb|ACI33539.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 359
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KR--FWFCHLCGRSCSRSCFS 153
KKIFVG L EAT E +R YF FG I + +P KR F F S + C
Sbjct: 157 KKIFVGGLNPEATEETIREYFGTFGEIESIELPVDPKFKKRRGFIFITFKEESTVKKCLE 216
Query: 154 KVSRNL 159
K N+
Sbjct: 217 KKFHNV 222
>gi|421092926|ref|ZP_15553654.1| hypothetical protein LEP1GSC128_2009 [Leptospira borgpetersenii
str. 200801926]
gi|410364302|gb|EKP15327.1| hypothetical protein LEP1GSC128_2009 [Leptospira borgpetersenii
str. 200801926]
gi|456890197|gb|EMG01047.1| hypothetical protein LEP1GSC123_3660 [Leptospira borgpetersenii
str. 200701203]
Length = 129
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 10 KISVGNLPQELTEDELKKIFSEFGTVQEVHIKK----DKTTGRSLS 51
>gi|339522325|gb|AEJ84327.1| RNA-binding protein 4 [Capra hircus]
Length = 362
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCH 141
K+F+G LP+EAT +++R F ++G++L+ + K F H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVH 41
>gi|125984017|ref|XP_001355773.1| GA10287 [Drosophila pseudoobscura pseudoobscura]
gi|54644090|gb|EAL32832.1| GA10287 [Drosophila pseudoobscura pseudoobscura]
Length = 421
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F R+G++ +V +
Sbjct: 116 FGRYGKVTEVVI 127
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|194760296|ref|XP_001962377.1| GF15435 [Drosophila ananassae]
gi|190616074|gb|EDV31598.1| GF15435 [Drosophila ananassae]
Length = 421
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F R+G++ +V +
Sbjct: 116 FGRYGKVTEVVI 127
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|291045424|ref|NP_001166975.1| DAZ associated protein 1 [Danio rerio]
Length = 418
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GFITF + SV+ + + H++ G V V +A P++ G++ +G A I
Sbjct: 166 RGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEPRDSKAPAPGQLGANQWGP-RAII 224
Query: 70 SAATRYAALGAPT 82
SAA +AA APT
Sbjct: 225 SAANGWAAQPAPT 237
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSK 154
K+FVG L T E LR YFS++G ++D + K F F +C R+
Sbjct: 24 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 83
Query: 155 VSRNL 159
NL
Sbjct: 84 KPHNL 88
>gi|456865289|gb|EMF83649.1| hypothetical protein LEP1GSC188_1261 [Leptospira weilii serovar
Topaz str. LT2116]
Length = 121
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 2 KISVGNLPQELTEDELKKIFSEFGTVQEVHIKK----DKTTGRSLS 43
>gi|24215251|ref|NP_712732.1| RNA-binding protein [Leptospira interrogans serovar Lai str. 56601]
gi|45657299|ref|YP_001385.1| glycine rich RNA-binding protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386074547|ref|YP_005988864.1| RNA-binding protein [Leptospira interrogans serovar Lai str. IPAV]
gi|417762541|ref|ZP_12410530.1| hypothetical protein LEP1GSC027_1944 [Leptospira interrogans str.
2002000624]
gi|417766762|ref|ZP_12414712.1| hypothetical protein LEP1GSC007_2329 [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417770705|ref|ZP_12418610.1| hypothetical protein LEP1GSC014_2469 [Leptospira interrogans
serovar Pomona str. Pomona]
gi|417775026|ref|ZP_12422886.1| hypothetical protein LEP1GSC025_2580 [Leptospira interrogans str.
2002000621]
gi|417783557|ref|ZP_12431275.1| hypothetical protein LEP1GSC077_1172 [Leptospira interrogans str.
C10069]
gi|418670230|ref|ZP_13231602.1| hypothetical protein LEP1GSC019_2498 [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|418671529|ref|ZP_13232880.1| hypothetical protein LEP1GSC026_3426 [Leptospira interrogans str.
2002000623]
gi|418682158|ref|ZP_13243378.1| hypothetical protein LEP1GSC045_3909 [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418692189|ref|ZP_13253268.1| hypothetical protein LEP1GSC080_0694 [Leptospira interrogans str.
FPW2026]
gi|418700016|ref|ZP_13260961.1| hypothetical protein LEP1GSC087_3292 [Leptospira interrogans
serovar Bataviae str. L1111]
gi|418704417|ref|ZP_13265290.1| hypothetical protein LEP1GSC096_0473 [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418708764|ref|ZP_13269564.1| hypothetical protein LEP1GSC097_1001 [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|418712011|ref|ZP_13272758.1| hypothetical protein LEP1GSC099_1828 [Leptospira interrogans str.
UI 08452]
gi|418724848|ref|ZP_13283632.1| hypothetical protein LEP1GSC104_2843 [Leptospira interrogans str.
UI 12621]
gi|418728349|ref|ZP_13286922.1| hypothetical protein LEP1GSC105_1281 [Leptospira interrogans str.
UI 12758]
gi|421083926|ref|ZP_15544795.1| hypothetical protein LEP1GSC173_2424 [Leptospira santarosai str.
HAI1594]
gi|421102189|ref|ZP_15562797.1| hypothetical protein LEP1GSC117_2761 [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|421116664|ref|ZP_15577044.1| hypothetical protein LEP1GSC069_2131 [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|421119300|ref|ZP_15579624.1| hypothetical protein LEP1GSC057_3236 [Leptospira interrogans str.
Brem 329]
gi|421125488|ref|ZP_15585740.1| hypothetical protein LEP1GSC020_1582 [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421133201|ref|ZP_15593351.1| hypothetical protein LEP1GSC009_2366 [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|24196341|gb|AAN49750.1| RNA-binding protein [Leptospira interrogans serovar Lai str. 56601]
gi|45600537|gb|AAS70022.1| glycine rich RNA-binding protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353458336|gb|AER02881.1| RNA-binding protein [Leptospira interrogans serovar Lai str. IPAV]
gi|400326168|gb|EJO78437.1| hypothetical protein LEP1GSC045_3909 [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400350900|gb|EJP03152.1| hypothetical protein LEP1GSC007_2329 [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|400357979|gb|EJP14098.1| hypothetical protein LEP1GSC080_0694 [Leptospira interrogans str.
FPW2026]
gi|409941534|gb|EKN87162.1| hypothetical protein LEP1GSC027_1944 [Leptospira interrogans str.
2002000624]
gi|409947361|gb|EKN97360.1| hypothetical protein LEP1GSC014_2469 [Leptospira interrogans
serovar Pomona str. Pomona]
gi|409953181|gb|EKO07682.1| hypothetical protein LEP1GSC077_1172 [Leptospira interrogans str.
C10069]
gi|409961745|gb|EKO25488.1| hypothetical protein LEP1GSC104_2843 [Leptospira interrogans str.
UI 12621]
gi|410011831|gb|EKO69942.1| hypothetical protein LEP1GSC069_2131 [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410022627|gb|EKO89402.1| hypothetical protein LEP1GSC009_2366 [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410347930|gb|EKO98781.1| hypothetical protein LEP1GSC057_3236 [Leptospira interrogans str.
Brem 329]
gi|410368017|gb|EKP23397.1| hypothetical protein LEP1GSC117_2761 [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410433582|gb|EKP77924.1| hypothetical protein LEP1GSC173_2424 [Leptospira santarosai str.
HAI1594]
gi|410437066|gb|EKP86170.1| hypothetical protein LEP1GSC020_1582 [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410575123|gb|EKQ38145.1| hypothetical protein LEP1GSC025_2580 [Leptospira interrogans str.
2002000621]
gi|410581488|gb|EKQ49298.1| hypothetical protein LEP1GSC026_3426 [Leptospira interrogans str.
2002000623]
gi|410754001|gb|EKR15658.1| hypothetical protein LEP1GSC019_2498 [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|410760888|gb|EKR27081.1| hypothetical protein LEP1GSC087_3292 [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410765813|gb|EKR36507.1| hypothetical protein LEP1GSC096_0473 [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410770694|gb|EKR45907.1| hypothetical protein LEP1GSC097_1001 [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410776866|gb|EKR56841.1| hypothetical protein LEP1GSC105_1281 [Leptospira interrogans str.
UI 12758]
gi|410791518|gb|EKR85192.1| hypothetical protein LEP1GSC099_1828 [Leptospira interrogans str.
UI 08452]
gi|455668729|gb|EMF33919.1| hypothetical protein LEP1GSC201_2116 [Leptospira interrogans
serovar Pomona str. Fox 32256]
gi|455789292|gb|EMF41221.1| hypothetical protein LEP1GSC067_0923 [Leptospira interrogans
serovar Lora str. TE 1992]
gi|456969053|gb|EMG10140.1| hypothetical protein LEP1GSC151_2726 [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
gi|456986982|gb|EMG22419.1| hypothetical protein LEP1GSC150_3504 [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 131
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 12 KISVGNLPQELTEDELKKIFSEFGTVEEVHIKK----DKTTGRSLS 53
>gi|418719335|ref|ZP_13278535.1| hypothetical protein LEP1GSC101_3911 [Leptospira borgpetersenii
str. UI 09149]
gi|418738917|ref|ZP_13295310.1| hypothetical protein LEP1GSC121_3439 [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|410744488|gb|EKQ93229.1| hypothetical protein LEP1GSC101_3911 [Leptospira borgpetersenii
str. UI 09149]
gi|410745615|gb|EKQ98525.1| hypothetical protein LEP1GSC121_3439 [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 129
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 10 KISVGNLPQELTEDELKKIFSEFGTVQEVHIKK----DKTTGRSLS 51
>gi|2204089|emb|CAB05388.1| FCA gamma [Arabidopsis thaliana]
gi|57169178|gb|AAW38964.1| FCA [Arabidopsis thaliana]
Length = 747
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
+ DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V
Sbjct: 102 ISDH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEV 149
>gi|186511879|ref|NP_849543.2| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658325|gb|AEE83725.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 747
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
+ DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V
Sbjct: 102 ISDH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEV 149
>gi|66804019|gb|AAY56658.1| heterogeneous nuclear ribonucleoprotein [Drosophila simulans]
Length = 421
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F R+G++ +V +
Sbjct: 116 FGRYGKVTEVVI 127
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|300122958|emb|CBK23965.2| unnamed protein product [Blastocystis hominis]
Length = 173
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKV 155
+ + LP +AT EDL +F ++G+I D+Y+P+ F F +R +
Sbjct: 16 VRIDNLPNDATKEDLNNHFEKYGKIADIYIPRNTHDGGNRGFGFVRYVNEDEARKALDEN 75
Query: 156 SRNL 159
L
Sbjct: 76 GEEL 79
>gi|334302803|sp|O04425.2|FCA_ARATH RecName: Full=Flowering time control protein FCA
gi|2244986|emb|CAB10407.1| FCA gamma protein [Arabidopsis thaliana]
gi|7268377|emb|CAB78670.1| FCA gamma protein [Arabidopsis thaliana]
Length = 747
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
+ DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V
Sbjct: 102 ISDH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEV 149
>gi|47209605|emb|CAF93000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 391
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
KIF+G L E T++++R FS++G+I + + K F F H+
Sbjct: 3 KIFIGNLASETTSDEIRSLFSQYGKISECTIVKNFGFVHM 42
>gi|36102|emb|CAA29922.1| unnamed protein product [Homo sapiens]
Length = 320
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F +FG+I + +
Sbjct: 125 FEQFGKIEVIEI 136
>gi|2204095|emb|CAB05391.1| FCA gamma [Arabidopsis thaliana]
Length = 747
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 131
+ DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V
Sbjct: 102 ISDH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEV 149
>gi|297833470|ref|XP_002884617.1| hypothetical protein ARALYDRAFT_317559 [Arabidopsis lyrata subsp.
lyrata]
gi|297330457|gb|EFH60876.1| hypothetical protein ARALYDRAFT_317559 [Arabidopsis lyrata subsp.
lyrata]
Length = 320
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
+KIFVG L + T EDLRR+F +FG ++D V
Sbjct: 14 SRKIFVGSLAWQTTTEDLRRFFEQFGEVIDANV 46
>gi|359492060|ref|XP_003634360.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Vitis vinifera]
Length = 418
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 28/150 (18%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGST--VVVDRATPKEDDFRPVGRMSHGGYGAYNAY 68
+G GF+ F + M + + + S+ + + ATP++ SHGGY + A
Sbjct: 219 KGYGFVRFGDENERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSHGGYASNGAS 278
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
+ + G+S + IFVG L + EDLR+ FS++G I
Sbjct: 279 VQS---------------------DGDS---MNTTIFVGGLDPNVSDEDLRQPFSQYGEI 314
Query: 129 LDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
+ V +P K F R+ + K++
Sbjct: 315 VSVKIPVGKGCGFVQFANRNNAEDALQKLN 344
>gi|47939618|gb|AAH71945.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
Length = 320
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F +FG+I + +
Sbjct: 125 FEQFGKIEVIEI 136
>gi|321459101|gb|EFX70158.1| hypothetical protein DAPPUDRAFT_189289 [Daphnia pulex]
Length = 334
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KRFWFCHLC 143
KIFVG LPQ+ T E +R +F FG I+++ +P +R FC +
Sbjct: 149 KIFVGGLPQDTTEETIRSFFGTFGNIVEIEMPFDRVKNQRKNFCFIT 195
>gi|255560914|ref|XP_002521470.1| RNA binding protein, putative [Ricinus communis]
gi|223539369|gb|EEF40960.1| RNA binding protein, putative [Ricinus communis]
Length = 2256
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF+T+A V+ ++ D+H + G V + R PK G
Sbjct: 1960 KDRKTGQPRGFGFVTYADPSVVDQVIQDSHVINGKQVEIKRTIPK------------GAI 2007
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
GA + KKIFVG +P T + + +F
Sbjct: 2008 GARDFKT--------------------------------KKIFVGGIPTTVTEVEFKEFF 2035
Query: 123 SRFGRILD 130
++G +++
Sbjct: 2036 MQYGEVIE 2043
>gi|195338791|ref|XP_002036007.1| GM16252 [Drosophila sechellia]
gi|195577167|ref|XP_002078444.1| Hrb27C [Drosophila simulans]
gi|194129887|gb|EDW51930.1| GM16252 [Drosophila sechellia]
gi|194190453|gb|EDX04029.1| Hrb27C [Drosophila simulans]
Length = 421
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F R+G++ +V +
Sbjct: 116 FGRYGKVTEVVI 127
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|332019507|gb|EGI59986.1| Heterogeneous nuclear ribonucleoprotein 27C [Acromyrmex echinatior]
Length = 340
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+F+G LP T DLR YF+RFG++++V +
Sbjct: 91 KVFLGGLPSNVTETDLRSYFTRFGKVMEVVI 121
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L+RYF R+G ++D V K
Sbjct: 1 KLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKN 34
>gi|194862724|ref|XP_001970091.1| GG10443 [Drosophila erecta]
gi|195471631|ref|XP_002088106.1| GE14209 [Drosophila yakuba]
gi|190661958|gb|EDV59150.1| GG10443 [Drosophila erecta]
gi|194174207|gb|EDW87818.1| GE14209 [Drosophila yakuba]
Length = 421
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F R+G++ +V +
Sbjct: 116 FGRYGKVTEVVI 127
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|440899388|gb|ELR50691.1| RNA-binding protein 14 [Bos grunniens mutus]
Length = 669
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVS 156
KIFVG + T+++LRR F R GR+++ V K + F H+ + +++ ++++
Sbjct: 80 KIFVGNVSAACTSQELRRLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLN 133
>gi|297676076|ref|XP_002815972.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Pongo abelii]
Length = 320
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+ +A+ + V+ M H++ G V +RA +ED RP
Sbjct: 47 RDPNTKHSRGFGFVIYATVEEVDTAMNARPHKVDGRVVEPNRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
+A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----DAHLTV------------------------------KKIFVGGIKEDTEEHHLRHY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|195438186|ref|XP_002067018.1| GK24781 [Drosophila willistoni]
gi|194163103|gb|EDW78004.1| GK24781 [Drosophila willistoni]
Length = 422
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F R+G++ +V +
Sbjct: 116 FGRYGKVTEVVI 127
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|398332580|ref|ZP_10517285.1| RNA binding protein [Leptospira alexanderi serovar Manhao 3 str. L
60]
Length = 121
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 2 KISVGNLPQELTEDELKKIFSEFGTVQEVHIKK----DKTTGRSLS 43
>gi|307214018|gb|EFN89225.1| Heterogeneous nuclear ribonucleoprotein 27C [Harpegnathos saltator]
Length = 263
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+F+G LP T DLR YF+RFG++++V +
Sbjct: 60 KVFLGGLPSNVTETDLRSYFTRFGKVMEVVI 90
>gi|388329666|gb|AFK29221.1| musashi-PA [Drosophila buzzatii]
Length = 671
Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +V+ ++ V H L G + ATPK RP
Sbjct: 254 KDPVTQRSRGFGFITFQEPCTVDKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 302
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 303 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 328
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 329 FSQFGAV 335
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 340 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 388
>gi|388329663|gb|AFK29218.1| musashi-PB, partial [Drosophila buzzatii]
Length = 636
Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +V+ ++ V H L G + ATPK RP
Sbjct: 219 KDPVTQRSRGFGFITFQEPCTVDKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 267
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 268 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 293
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 294 FSQFGAV 300
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 305 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 353
>gi|348544593|ref|XP_003459765.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 380
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRN 158
KIF+G L ATAE+LR F ++G++ + + K + F H+ S + + ++
Sbjct: 3 KIFIGNLACNATAEELRELFEKYGKVTECDIVKNYGFVHMSNMSEAEEAIKNLHQH 58
>gi|195036632|ref|XP_001989774.1| GH18982 [Drosophila grimshawi]
gi|193893970|gb|EDV92836.1| GH18982 [Drosophila grimshawi]
Length = 641
Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +V+ ++ V H L G + ATPK RP
Sbjct: 232 KDPVTQRSRGFGFITFQEPCTVDKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 280
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 281 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 306
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 307 FSQFGAV 313
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 318 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 366
>gi|356548971|ref|XP_003542872.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 409
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 39/175 (22%)
Query: 15 FITFASADSVENLMVDT-----HELGGSTVVVDRATPK---------EDDFRPVGRMSHG 60
F+ +AD + L+ +T + + G+ VV+DR T + D+ V M+
Sbjct: 163 FVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSDESEQVRAMTE- 221
Query: 61 GYGAYNAYISAATRYAALG-----APTLYDHPGSFYGRGESSQRIGKK---------IFV 106
+ +TR +G PT P + Y ++SQ G + IFV
Sbjct: 222 -----MQGVLCSTRPMRIGPASNKTPTTQSQPKASY---QNSQPQGSQNENDPNNTTIFV 273
Query: 107 GRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVSRNL 159
G L T + LR+ FS++G ++ V +P KR F RSC+ ++ L
Sbjct: 274 GNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTL 328
>gi|313233627|emb|CBY09798.1| unnamed protein product [Oikopleura dioica]
Length = 367
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 60/156 (38%), Gaps = 27/156 (17%)
Query: 7 SKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRA-----TPKEDDFRPVGRMS-- 58
+K R GF+TFAS + L + TH++G V V RA P V MS
Sbjct: 157 TKEGRSFGFVTFASIEEANAALEIKTHKIGDRDVEVKRAIANTRAPPMVSPTMVAPMSGV 216
Query: 59 ---------------HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIG-- 101
YG + + T Y++ + G+ Y + I
Sbjct: 217 FYPPFVYPSMSTMPMDSSYGMVDPGALSQTSYSSTSPTGSHFQNGNNYTNSQQDYEIDGQ 276
Query: 102 --KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
KK+F+G L DLR YFS FG++ D V K
Sbjct: 277 QQKKLFIGGLHWRTEDTDLRNYFSTFGQLTDAMVIK 312
>gi|343172818|gb|AEL99112.1| ribonucleoprotein, partial [Silene latifolia]
Length = 319
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFI+F S D+V+ ++ T H+L G V V RA PK+
Sbjct: 69 DQNTQRPRGFGFISFDSEDAVDRVLQSTFHDLDGKQVEVKRALPKD 114
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--------PKRFWFCHL 142
KKIFVG LP T E R+YF FG + DV + P+ F F
Sbjct: 35 KKIFVGGLPPSLTDEGFRQYFEGFGHVTDVVIMFDQNTQRPRGFGFISF 83
>gi|307940740|gb|ADN95984.1| G-strand specific single-stranded telomere-binding protein 2
[Nicotiana tabacum]
Length = 337
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 44/131 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT+ V+ ++ + H + V + R PK
Sbjct: 48 KDRHTGRPRGFGFITYEDPSVVDTVIAENHIINDKQVEIKRTIPK--------------- 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G ES KKIFVG +P T ++ + +F
Sbjct: 93 -----------------------------GSAESKDFKTKKIFVGGIPTTMTEDEFKNFF 123
Query: 123 SRFGRILDVYV 133
S+FG++ + +
Sbjct: 124 SKFGKVTEYEI 134
>gi|169646279|ref|NP_001108616.1| RNA binding motif protein 14 [Danio rerio]
gi|194332550|ref|NP_001123764.1| uncharacterized protein LOC100170513 [Xenopus (Silurana)
tropicalis]
gi|63100727|gb|AAH95368.1| Zgc:110682 [Danio rerio]
gi|163915521|gb|AAI57377.1| Zgc:110682 protein [Danio rerio]
gi|189441765|gb|AAI67521.1| LOC100170513 protein [Xenopus (Silurana) tropicalis]
Length = 471
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCF 152
K+FVG L E T +DL F+ FG ++ + V ++F F HL G + S
Sbjct: 8 KLFVGNLDLETTQDDLIALFAPFGEVVHITVLRQFAFVHLQGEGAADSAI 57
>gi|343172816|gb|AEL99111.1| ribonucleoprotein, partial [Silene latifolia]
Length = 319
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFI+F S D+V+ ++ T H+L G V V RA PK+
Sbjct: 69 DQNTQRPRGFGFISFDSEDAVDRVLQSTFHDLDGKQVEVKRALPKD 114
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--------PKRFWFCHL 142
KKIFVG LP T E R+YF FG + DV + P+ F F
Sbjct: 35 KKIFVGGLPPSLTDEGFRQYFEGFGHVTDVVIMFDQNTQRPRGFGFISF 83
>gi|325179628|emb|CCA14026.1| heterogeneous nuclear ribonucleoprotein A1 putative [Albugo
laibachii Nc14]
Length = 618
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD S+ RG GFIT+A V+ + +H L V RA P+ D+ R V +
Sbjct: 41 KDPISRRSRGFGFITYADPACVDRALAQPSHVLDSRRVEAKRAVPRADNSREVVSTTIKP 100
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G + PTL S G ++ KKIFVG L E + ++Y
Sbjct: 101 SG-------------PIVLPTL----NSACASGGAT----KKIFVGGLHYETKDAEFKKY 139
Query: 122 FSRFGRILDVYV 133
F ++G+++ V
Sbjct: 140 FQKYGKVVSAEV 151
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
KIF+G L E T E LR YF FG + D V K
Sbjct: 9 KIFIGGLSYETTDEKLRSYFGAFGSVTDAVVMK 41
>gi|418744200|ref|ZP_13300556.1| hypothetical protein LEP1GSC163_2155 [Leptospira santarosai str.
CBC379]
gi|418752017|ref|ZP_13308289.1| hypothetical protein LEP1GSC179_1293 [Leptospira santarosai str.
MOR084]
gi|409967746|gb|EKO35571.1| hypothetical protein LEP1GSC179_1293 [Leptospira santarosai str.
MOR084]
gi|410794651|gb|EKR92551.1| hypothetical protein LEP1GSC163_2155 [Leptospira santarosai str.
CBC379]
Length = 121
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 2 KISVGNLPQELTEDELKKIFSEFGAVREVHIKKD----KTTGRSLS 43
>gi|444317072|ref|XP_004179193.1| hypothetical protein TBLA_0B08590 [Tetrapisispora blattae CBS 6284]
gi|387512233|emb|CCH59674.1| hypothetical protein TBLA_0B08590 [Tetrapisispora blattae CBS 6284]
Length = 623
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF+TF + SV+ ++ H L G + RA P+E+ + G++ GG
Sbjct: 203 KDNNTGKSRGFGFLTFEKSSSVDEVVKTQHILDGKVIDPKRAIPREEQDK-TGKIFIGGI 261
Query: 63 GA 64
GA
Sbjct: 262 GA 263
>gi|15220810|ref|NP_173208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332191496|gb|AEE29617.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 369
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK----EDDFRPVGRMSHGGYGA 64
RG GF+TF + DSV+ L D HELG V + RA PK ++ FR G + G Y
Sbjct: 198 RGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDNSFRSYG--ASGKYDQ 255
Query: 65 YNAYISAATR 74
++Y A
Sbjct: 256 EDSYSGKANE 265
>gi|15594035|emb|CAC69852.1| nucleic acid binding protein [Nicotiana tabacum]
Length = 456
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCH 141
Y + G G + IFVG L + EDLR+ F ++G I+ V +P +R W
Sbjct: 305 YSNGGPAQGSQPDADSTNTTIFVGGLDPNVSDEDLRQPFVQYGEIVSVKIPVEERVWVWQ 364
Query: 142 LCGRSCSRSCFSKVS 156
R+ + K++
Sbjct: 365 FANRNDAEEALQKLN 379
>gi|71012413|ref|XP_758493.1| hypothetical protein UM02346.1 [Ustilago maydis 521]
gi|74702789|sp|Q4PC17.1|MRD1_USTMA RecName: Full=Multiple RNA-binding domain-containing protein 1
gi|46098151|gb|EAK83384.1| hypothetical protein UM02346.1 [Ustilago maydis 521]
Length = 858
Score = 42.0 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
Query: 16 ITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG-GYGAYNAYISAATR 74
++F++ D E L H G S R K D RP R+S G G+ + + +A T
Sbjct: 628 LSFSTTD--ERLTAFFH--GLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAARTA 683
Query: 75 YAALGAPTLYDHP--GSFYGRGESSQRIGK------KIFVGRLPQEATAEDLRRYFSRFG 126
A+ L H +F R + KI + LP EAT D+R FS G
Sbjct: 684 QKAMDGKVLDAHTLVVTFARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSSQG 743
Query: 127 RILDVYVPKRF 137
++ V +PK+F
Sbjct: 744 QLKSVRLPKKF 754
>gi|28839776|gb|AAH47836.1| Zgc:56141 protein [Danio rerio]
gi|197247072|gb|AAI65109.1| Zgc:56141 protein [Danio rerio]
Length = 249
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNL 159
+++G LPQ+A ++L+ FS++G + + + K F F H+ R + +K +NL
Sbjct: 76 LYIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSA----TKAIKNL 127
>gi|359686352|ref|ZP_09256353.1| RNA binding protein [Leptospira santarosai str. 2000030832]
gi|421114349|ref|ZP_15574771.1| hypothetical protein LEP1GSC071_1424 [Leptospira santarosai str.
JET]
gi|422004173|ref|ZP_16351395.1| RNA binding protein [Leptospira santarosai serovar Shermani str. LT
821]
gi|410800308|gb|EKS06504.1| hypothetical protein LEP1GSC071_1424 [Leptospira santarosai str.
JET]
gi|417257151|gb|EKT86557.1| RNA binding protein [Leptospira santarosai serovar Shermani str. LT
821]
Length = 121
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 2 KISVGNLPQELTEDELKKIFSEFGAVREVHIKKD----KTTGRSLS 43
>gi|291407048|ref|XP_002719860.1| PREDICTED: musashi 1 [Oryctolagus cuniculus]
Length = 568
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TFA V+ ++ + HEL T+ A P+ + V R
Sbjct: 259 RDPLTKRSRGFGFVTFADQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT---- 314
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 315 ----------------------------------------KKIFVGGLSVNTTVEDVKQY 334
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 335 FEQFGKVDDAML 346
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D VE + + HE+ V +A PKE
Sbjct: 349 DKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 394
>gi|302142363|emb|CBI19566.3| unnamed protein product [Vitis vinifera]
Length = 324
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 28/157 (17%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGST--VVVDRATPKEDDFRPVGRMSHGG 61
D + +G GF+ F + M + + + S+ + + ATP++ SHGG
Sbjct: 118 DANTGRSKGYGFVRFGDENERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSHGG 177
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
Y + A + + G+S + IFVG L + EDLR+
Sbjct: 178 YASNGASVQS---------------------DGDS---MNTTIFVGGLDPNVSDEDLRQP 213
Query: 122 FSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
FS++G I+ V +P K F R+ + K++
Sbjct: 214 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLN 250
>gi|255084900|ref|XP_002504881.1| predicted protein [Micromonas sp. RCC299]
gi|226520150|gb|ACO66139.1| predicted protein [Micromonas sp. RCC299]
Length = 85
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 27/35 (77%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFW 138
+ V +LP +A AE+L FS++G+++DVY+P+ ++
Sbjct: 2 LLVRQLPPDARAEELEEAFSKYGKVIDVYIPRDYY 36
>gi|391339441|ref|XP_003744058.1| PREDICTED: uncharacterized protein LOC100905097 [Metaseiulus
occidentalis]
Length = 355
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLW 160
++FVG LP++ D+ YF R GRI DV + F +R S+++ W
Sbjct: 4 RVFVGHLPRKVDRRDIEDYFDRIGRIRDVVHKGNYAFVEFADERDARDAISELNGTSW 61
>gi|147901982|ref|NP_001087983.1| RNA binding motif protein 4B [Xenopus laevis]
gi|52139141|gb|AAH82645.1| LOC494668 protein [Xenopus laevis]
Length = 336
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
K+FVG LP EAT +L+ F +FGR+ + + K + F H+
Sbjct: 3 KLFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHM 42
>gi|427777107|gb|JAA54005.1| Putative heteroproteinous nuclear ribonucleoprotein at 27c
[Rhipicephalus pulchellus]
Length = 322
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRS 146
KIFVG L E T E L YFSRFG ++D V C+ GRS
Sbjct: 11 KIFVGGLSWETTQESLLNYFSRFGEVVDSVV-----MCNETGRS 49
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KIFVG LP T DL +FS +G++ +V +
Sbjct: 116 KIFVGGLPATVTETDLHAFFSEYGKVTEVLI 146
>gi|195052284|ref|XP_001993272.1| GH13720 [Drosophila grimshawi]
gi|193900331|gb|EDV99197.1| GH13720 [Drosophila grimshawi]
Length = 421
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPANVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F R+G++ +V +
Sbjct: 116 FGRYGKVTEVVI 127
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|189210886|ref|XP_001941774.1| heterogeneous nuclear ribonucleoprotein D0 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187977867|gb|EDU44493.1| heterogeneous nuclear ribonucleoprotein D0 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 442
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 57/160 (35%), Gaps = 54/160 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGG------STVVVDRATPKE-DDFRPVG 55
+D + RG GF+TF V +MV H L G ST+ A E D R +
Sbjct: 2 RDSATGRSRGFGFLTFKDPKCVNIVMVKEHYLDGKIVCKPSTITKLPANANEIDPKRAIP 61
Query: 56 RMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATA 115
R E +R KIFVG + QEAT
Sbjct: 62 R--------------------------------------EEQERT-SKIFVGGVSQEATE 82
Query: 116 EDLRRYFSRFGRILDVYV--------PKRFWFCHLCGRSC 147
ED +F +FGR++D + P+ F F G +
Sbjct: 83 EDFTNFFKQFGRVVDATLMMDKETGRPRGFGFVTFDGDAA 122
>gi|2708532|gb|AAB92518.1| putative RNA binding protein [Nicotiana tabacum]
Length = 482
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGST--VVVDRATPKEDDFRPVGRMSHGGYGAYNAY 68
+G GF+ F M + + + S+ + + ATPK +P + Y +
Sbjct: 273 KGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPK----KPSAQQQ---YSSQAVI 325
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
+S YA+ GA T +G IFVG L + T E+LR+ F++FG +
Sbjct: 326 LSGG--YASNGAAT--------HGSQSDGDASNTTIFVGGLDSDVTDEELRQSFNQFGEV 375
Query: 129 LDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
+ V +P K F RS ++ K+S
Sbjct: 376 VSVKIPAGKGCGFVQFSDRSSAQEAIQKLS 405
>gi|410450276|ref|ZP_11304317.1| hypothetical protein LEP1GSC068_0704 [Leptospira sp. Fiocruz
LV3954]
gi|410015789|gb|EKO77880.1| hypothetical protein LEP1GSC068_0704 [Leptospira sp. Fiocruz
LV3954]
gi|456874657|gb|EMF89929.1| hypothetical protein LEP1GSC005_0936 [Leptospira santarosai str.
ST188]
Length = 121
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + +V++ K GRS S
Sbjct: 2 KISVGNLPQELTEDELKKIFSEFGAVREVHIKKD----KTTGRSLS 43
>gi|392569058|gb|EIW62232.1| hypothetical protein TRAVEDRAFT_117197 [Trametes versicolor
FP-101664 SS1]
Length = 330
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 48/123 (39%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
R F+TF SV +MV H L G + RA P+++ R
Sbjct: 39 RCFAFLTFEDPASVNAVMVREHFLDGKIIDPKRAIPRQEHQR------------------ 80
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
K+F+G LP T+E +R YFS+FG+++D
Sbjct: 81 ------------------------------ATKLFIGGLPGSVTSESMREYFSQFGKVVD 110
Query: 131 VYV 133
V
Sbjct: 111 ATV 113
>gi|186511881|ref|NP_193363.4| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658326|gb|AEE83726.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 533
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
+ DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V +
Sbjct: 102 ISDH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVAL 151
>gi|2204096|emb|CAB05392.1| FCA delta [Arabidopsis thaliana]
gi|5302786|emb|CAB46035.1| FCA delta protein [Arabidopsis thaliana]
gi|7268378|emb|CAB78671.1| FCA delta protein [Arabidopsis thaliana]
Length = 533
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
+ DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V +
Sbjct: 102 ISDH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVAL 151
>gi|2204091|emb|CAB05389.1| FCA delta [Arabidopsis thaliana]
Length = 533
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
+ DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V +
Sbjct: 102 ISDH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVAL 151
>gi|410906707|ref|XP_003966833.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 347
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKV 155
KIFVG LP+EA E+++ F+ +G + + + K + F H+ R + +
Sbjct: 3 KIFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAATKAIKSL 55
>gi|397509976|ref|XP_003825383.1| PREDICTED: LOW QUALITY PROTEIN: TAR DNA-binding protein 43-like
[Pan paniscus]
Length = 416
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 27/35 (77%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
K+FVGR ++ TA++LR++F ++G ++DV + K F
Sbjct: 195 KVFVGRXTEDMTADELRQFFCQYGEVVDVVILKPF 229
>gi|346469143|gb|AEO34416.1| hypothetical protein [Amblyomma maculatum]
Length = 314
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRS 146
KIFVG L E T E L YFSRFG ++D V C+ GRS
Sbjct: 10 KIFVGGLSWETTQESLLNYFSRFGEVVDCVV-----MCNETGRS 48
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGR 56
DQ + RG GFI+F S + V L + ++ G V RA PKE VGR
Sbjct: 144 DQEQRRSRGFGFISFESEEPVNQLTAQRYVDISGKQVECKRAEPKESRPPKVGR 197
>gi|254579563|ref|XP_002495767.1| ZYRO0C02574p [Zygosaccharomyces rouxii]
gi|238938658|emb|CAR26834.1| ZYRO0C02574p [Zygosaccharomyces rouxii]
Length = 543
Score = 42.0 bits (97), Expect = 0.094, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF+TF S+ SV+ ++ H L G + RA P+E+ + G++ GG
Sbjct: 192 KDTNTGRSRGFGFLTFDSSSSVDEVVKTQHILDGKVIDPKRAIPREEQDK-TGKIFVGGI 250
Query: 63 GA 64
GA
Sbjct: 251 GA 252
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+F+G L E T + LR YFS++GR++D+ + K
Sbjct: 160 KMFIGGLNWETTEDTLRDYFSKYGRVIDLKIMK 192
>gi|170595883|ref|XP_001902557.1| Sr protein [Brugia malayi]
gi|158589706|gb|EDP28594.1| Sr protein, putative [Brugia malayi]
Length = 153
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
DH S + K++VG LPQ+AT+++L F+RFGRI V+V +R
Sbjct: 2 DHIIYLLNMSRRSDPLDCKVYVGGLPQDATSQELEDAFNRFGRIRKVWVARR 53
>gi|1899188|gb|AAC49850.1| DNA binding protein ACBF [Nicotiana tabacum]
Length = 428
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGST--VVVDRATPKEDDFRPVGRMSHGGYGAYNAY 68
+G GF+ F M + + + S+ + + ATPK +P + Y +
Sbjct: 219 KGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPK----KPSAQQQ---YSSQAVI 271
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
+S YA+ GA T +G IFVG L + T E+LR+ F++FG +
Sbjct: 272 LSGG--YASNGAAT--------HGSQSDGDASNTTIFVGGLDSDVTDEELRQSFNQFGEV 321
Query: 129 LDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
+ V +P K F RS ++ K+S
Sbjct: 322 VSVKIPAGKGCGFVQFSDRSSAQEAIQKLS 351
>gi|8778468|gb|AAF79476.1|AC022492_20 F1L3.34 [Arabidopsis thaliana]
Length = 392
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 11 RGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK----EDDFRPVGRMSHGGYGA 64
RG GF+TF + DSV+ L D HELG V + RA PK ++ FR G + G Y
Sbjct: 221 RGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDNSFRSYG--ASGKYDQ 278
Query: 65 YNAYISAATR 74
++Y A
Sbjct: 279 EDSYSGKANE 288
>gi|289739881|gb|ADD18688.1| RNA-binding protein musashi [Glossina morsitans morsitans]
Length = 422
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V++ L H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPANVQHVLQSGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F R+G++ +V +
Sbjct: 116 FGRYGKVTEVVI 127
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|449446975|ref|XP_004141245.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
gi|449498692|ref|XP_004160607.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
Length = 426
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 24/150 (16%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGST--VVVDRATPKEDDFRPVGRMSHGGYGAYNAY 68
+G GF+ F + M + + + S+ + + ATP++ S GG + N Y
Sbjct: 219 KGYGFVRFGDDNERSQAMTEMNGIYCSSRPMRIGAATPRKSSGYQQQHSSQGGGYSTNGY 278
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
S + A T IFVG L T EDLR+ FS++G I
Sbjct: 279 FSQGLQSEGDSANTT--------------------IFVGGLDPNVTDEDLRQPFSQYGEI 318
Query: 129 LDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
+ V +P K F R+ + K++
Sbjct: 319 VSVKIPVGKGCGFVQFANRNDAEEALQKLN 348
>gi|108744009|gb|ABG02277.1| heterogeneous nuclear ribonucleoprotein A/B [Haplochromis burtoni]
Length = 316
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KR--FWFCHLCGRSCSRSCFS 153
KKIFVG L EAT E +R YF FG I + +P KR F F + + C
Sbjct: 140 KKIFVGGLNPEATEETIREYFGAFGEIETIELPIDPKSKKRRGFIFITYKEETSVKKCLE 199
Query: 154 KVSRNLWTAGC 164
K N+ C
Sbjct: 200 KKYHNIQGGRC 210
>gi|189241702|ref|XP_966757.2| PREDICTED: similar to hrp48.1 [Tribolium castaneum]
Length = 400
Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 44/132 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TF+ +V ++ + H L G T+ PK + R + + GG
Sbjct: 48 KNAESGRSRGFGFVTFSDPANVNTVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 102
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G P K+F+G LP T DLR +
Sbjct: 103 -----------------GYP---------------------KVFLGGLPSNVTETDLRTF 124
Query: 122 FSRFGRILDVYV 133
F+RFG++++V +
Sbjct: 125 FTRFGKVMEVVI 136
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T ++L+R+FSR+G ++D V K
Sbjct: 16 KLFVGGLSWETTQDNLQRFFSRYGEVIDCVVMKN 49
>gi|71999554|ref|NP_001023574.1| Protein SQD-1, isoform b [Caenorhabditis elegans]
gi|351059313|emb|CCD74156.1| Protein SQD-1, isoform b [Caenorhabditis elegans]
Length = 308
Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
R KK+FVG LP + + +DLR +F +FG++ D+ P
Sbjct: 107 RENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWP 142
>gi|268579353|ref|XP_002644659.1| Hypothetical protein CBG14639 [Caenorhabditis briggsae]
Length = 333
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKE 48
+D +K RG GF+TF S S E M D H+LGG TV RA P+E
Sbjct: 103 RDPNTKTSRGFGFVTFHSIFSAEAAMNDRPHKLGGKTVDSKRAIPRE 149
>gi|194741288|ref|XP_001953121.1| GF17369 [Drosophila ananassae]
gi|190626180|gb|EDV41704.1| GF17369 [Drosophila ananassae]
Length = 419
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 33/132 (25%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D + RG GF+T+ +SVEN+ H + TV RA P+ + +P G
Sbjct: 81 RDPMTNHSRGFGFVTYVDGNSVENVQRAGPHSIDNKTVETKRALPRHEFLKP-------G 133
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
GA N+ I A T + KIF+G L +R Y
Sbjct: 134 GGAGNS-IGAMTGVKS------------------------NKIFLGGLKDCHDESSIREY 168
Query: 122 FSRFGRILDVYV 133
FS+FG I V +
Sbjct: 169 FSQFGGITSVKL 180
>gi|393904919|gb|EJD73832.1| hypothetical protein LOAG_18772 [Loa loa]
Length = 199
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K++VG LPQ+AT+++L F+RFGRI V+V +R
Sbjct: 11 KVYVGGLPQDATSQELEDAFNRFGRIRKVWVARR 44
>gi|71748998|ref|XP_827838.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833222|gb|EAN78726.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 367
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
RG R+G K+FVG++P AT + LR F +G +L+V +
Sbjct: 74 RGNRHTRVGSKLFVGQVPAVATEKQLRPVFEPYGELLEVKI 114
>gi|351715649|gb|EHB18568.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 197
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 94 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFS 153
G S R K+F+G LP++AT +++ F ++G++L+ + K + F H+ ++ +
Sbjct: 9 GPVSPRPLVKLFIGNLPRKATEQEIHSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI- 67
Query: 154 KVSRNL 159
RNL
Sbjct: 68 ---RNL 70
>gi|307155022|ref|YP_003890406.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
gi|306985250|gb|ADN17131.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
Length = 109
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMS 58
+P+D+ + RG GF+ ++ D + + +D E G + V++A P+E+D R R S
Sbjct: 32 LPEDRETGKKRGFGFVEMSTDDEEDKAIETLDGAEWMGRQLKVNKARPRENDNRDSNRGS 91
Query: 59 HGGYGAYNAY 68
GGY N +
Sbjct: 92 GGGYRKNNNF 101
>gi|71999552|ref|NP_001023573.1| Protein SQD-1, isoform a [Caenorhabditis elegans]
gi|351059312|emb|CCD74155.1| Protein SQD-1, isoform a [Caenorhabditis elegans]
Length = 305
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
R KK+FVG LP + + +DLR +F +FG++ D+ P
Sbjct: 107 RENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWP 142
>gi|373459913|ref|ZP_09551680.1| RNP-1 like RNA-binding protein [Caldithrix abyssi DSM 13497]
gi|371721577|gb|EHO43348.1| RNP-1 like RNA-binding protein [Caldithrix abyssi DSM 13497]
Length = 99
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM--VDTHELGGSTVVVDRATPKEDDFRPVGRMS 58
+ +D+ + RG GF+T S D +N + ++ +LGG T+VV++A P+ + R +
Sbjct: 32 LLRDRYTGELRGFGFVTMESDDEAQNAIDNINNTDLGGRTLVVNKARPRTE------RPN 85
Query: 59 HGGYGAYN 66
GGYG N
Sbjct: 86 RGGYGNRN 93
>gi|348544591|ref|XP_003459764.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 419
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
KIF+G L + T+++LR FS++G+I + + K F F H+
Sbjct: 3 KIFIGNLSPDTTSDELRSLFSQYGKIAECSIVKNFGFVHM 42
>gi|427777737|gb|JAA54320.1| Putative glycine rich protein [Rhipicephalus pulchellus]
Length = 355
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 58 SHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAED 117
+ G YG YN +Y G + + G + +K+FVG + + +D
Sbjct: 17 ADGQYGEYNDGQFTDGQYQQEGEANAQTNEAAQNGSDAKTNEDERKLFVGGISWDTDNKD 76
Query: 118 LRRYFSRFGRILDVYV 133
LR YFS+FG ++DV +
Sbjct: 77 LREYFSKFGVVVDVNI 92
>gi|345316006|ref|XP_001514052.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like [Ornithorhynchus anatinus]
Length = 280
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|402591119|gb|EJW85049.1| hypothetical protein WUBG_04043 [Wuchereria bancrofti]
Length = 129
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K++VG LPQ+AT+++L F+RFGRI V+V +R
Sbjct: 11 KVYVGGLPQDATSQELEDAFNRFGRIRKVWVARR 44
>gi|221480563|gb|EEE19030.1| hypothetical protein TGGT1_105690 [Toxoplasma gondii GT1]
gi|221505534|gb|EEE31179.1| RNA-binding protein, putative [Toxoplasma gondii VEG]
Length = 430
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 49/138 (35%), Gaps = 47/138 (34%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GFITF + D V + H + G+ V V RA P+E+ HGG GA
Sbjct: 164 RGFGFITFTTPDPVARVADMRHTVDGTQVEVRRAIPREE------ARDHGGPGA------ 211
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
R ++FVG + + E LR YF +G I
Sbjct: 212 ---------------------------DRDAGRLFVGGISDDVNDESLRAYFRHYGEIQS 244
Query: 131 VYV--------PKRFWFC 140
V P+ F F
Sbjct: 245 ANVMVDRQNNRPRGFGFV 262
>gi|237838585|ref|XP_002368590.1| heterogeneous nuclear ribonucleoprotein A3, putative [Toxoplasma
gondii ME49]
gi|211966254|gb|EEB01450.1| heterogeneous nuclear ribonucleoprotein A3, putative [Toxoplasma
gondii ME49]
Length = 430
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 49/138 (35%), Gaps = 47/138 (34%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GFITF + D V + H + G+ V V RA P+E+ HGG GA
Sbjct: 164 RGFGFITFTTPDPVARVADMRHTVDGTQVEVRRAIPREE------ARDHGGPGA------ 211
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
R ++FVG + + E LR YF +G I
Sbjct: 212 ---------------------------DRDAGRLFVGGISDDVNDESLRAYFRHYGEIQS 244
Query: 131 VYV--------PKRFWFC 140
V P+ F F
Sbjct: 245 ANVMVDRQNNRPRGFGFV 262
>gi|348508132|ref|XP_003441609.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 2
[Oreochromis niloticus]
Length = 363
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A VE ++ HEL T+ A P+ + V R
Sbjct: 55 RDPVTKRSRGFGFVTYAEQAGVEKVLAQNRHELDSKTIDPKVAFPRRAQPKLVTRT---- 110
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 111 ----------------------------------------KKIFVGGLSVNTTIEDVKQY 130
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 131 FDQFGKVDDAML 142
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 145 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 190
>gi|194741664|ref|XP_001953309.1| GF17697 [Drosophila ananassae]
gi|190626368|gb|EDV41892.1| GF17697 [Drosophila ananassae]
Length = 634
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 46/127 (36%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GFITF +V+ ++ V H L G + ATPK RP
Sbjct: 238 KDPVTQRSRGFGFITFQEPCTVQKVLKVPIHTLDGKKIDPKHATPKN---RP-------- 286
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + Q+ +AE+++ Y
Sbjct: 287 ----------------------------------RQANKTKKIFVGGVSQDTSAEEVKAY 312
Query: 122 FSRFGRI 128
FS+FG +
Sbjct: 313 FSQFGPV 319
Score = 38.5 bits (88), Expect = 0.96, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
M DQ +K HRG GF+TF + D V+ + + H + V +A PKE
Sbjct: 324 MLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 372
>gi|119597384|gb|EAW76978.1| hCG2023776 [Homo sapiens]
Length = 317
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKCSRGFGFVTYATVEEVDAAMNARPHKVDGRVVESKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTKEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|426241336|ref|XP_004014547.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKGSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|261333541|emb|CBH16536.1| RBP12 homolog [Trypanosoma brucei gambiense DAL972]
Length = 367
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
RG R+G K+FVG++P AT + LR F +G +L+V +
Sbjct: 74 RGNRHTRVGSKLFVGQVPAVATEKQLRPVFEPYGELLEVKI 114
>gi|156837267|ref|XP_001642663.1| hypothetical protein Kpol_1076p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156113219|gb|EDO14805.1| hypothetical protein Kpol_1076p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 526
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF+TF A SV+ ++ H L G + RA P+E+ + G++ GG
Sbjct: 189 KDNNTGRSRGFGFLTFEDATSVDEVVKTQHILDGKVIDPKRAIPREEQDK-TGKIFVGGI 247
Query: 63 GA 64
GA
Sbjct: 248 GA 249
>gi|357447961|ref|XP_003594256.1| RNA-binding protein, putative [Medicago truncatula]
gi|355483304|gb|AES64507.1| RNA-binding protein, putative [Medicago truncatula]
Length = 344
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRP 53
D ++ RG GFIT+ S ++VE ++ T HEL G V V RA PK D P
Sbjct: 3 DHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPK--DLSP 51
>gi|345489599|ref|XP_003426177.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
2 [Nasonia vitripennis]
Length = 445
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L+RYFSR+G ++D V K
Sbjct: 14 KLFVGGLSWETTQENLQRYFSRYGEVIDCVVMKN 47
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+F+G LP T DLR +F RFG++++V +
Sbjct: 104 KVFLGGLPSNVTETDLRSFFQRFGKVMEVVI 134
>gi|449454730|ref|XP_004145107.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
gi|449472157|ref|XP_004153511.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
Length = 408
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCF 152
IFVG L T E LR+ FS++G ++ V +P KR F RSC+
Sbjct: 267 IFVGNLDSNVTDEHLRQVFSQYGELVHVKIPAGKRCGFVQFSDRSCAEEAL 317
>gi|449447311|ref|XP_004141412.1| PREDICTED: uncharacterized protein LOC101211898 [Cucumis sativus]
Length = 238
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
G+KIFVG L E T E+ R YF FG+I DV V
Sbjct: 15 GRKIFVGGLSAELTEEEFRSYFENFGQITDVVV 47
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPV 54
D + RG GF+TF S +SV++++ + HEL G V V RA PK+ ++ V
Sbjct: 50 DSVTNRPRGFGFVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGV 101
>gi|348531962|ref|XP_003453476.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Oreochromis niloticus]
Length = 315
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KR--FWFCHLCGRSCSRSCFS 153
KKIFVG L EAT E +R YF FG I + +P KR F F + + C
Sbjct: 140 KKIFVGGLNPEATEETIREYFGAFGEIETIELPIDPKSKKRRGFIFITYKEETSVKKCLE 199
Query: 154 KVSRNLWTAGC 164
K N+ C
Sbjct: 200 KKYHNIQGGRC 210
>gi|145539490|ref|XP_001455435.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423243|emb|CAK88038.1| unnamed protein product [Paramecium tetraurelia]
Length = 194
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVS 156
+ ++I+VGRL Q+ + EDL++ F R+G+I D+ + F GR ++ S++
Sbjct: 1 MSRQIYVGRLGQKTSREDLQKEFQRYGKIKDIDLRSTHAFIEFEGRDDAKKAISQMD 57
>gi|157118269|ref|XP_001653144.1| heterogeneous nuclear ribonucleoprotein 27c [Aedes aegypti]
gi|94468876|gb|ABF18287.1| RNA-binding protein musashi/mRNA cleavage and polyadenylation
factor I complex subunit HRP1 [Aedes aegypti]
gi|108875770|gb|EAT39995.1| AAEL008257-PA [Aedes aegypti]
Length = 398
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 46/125 (36%)
Query: 11 RGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSH-GGYGAYNAY 68
RG GF+TFA D+V+ + + H L G T+ PK + R + + GGY
Sbjct: 59 RGFGFVTFADPDNVDRALENGPHTLDGRTI-----DPKPCNPRSLHKPKRTGGY------ 107
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
K+F+G LP T DLR +FSR+G +
Sbjct: 108 ---------------------------------PKVFLGGLPPNITETDLRSFFSRYGNV 134
Query: 129 LDVYV 133
++V +
Sbjct: 135 MEVVI 139
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
HP E K+FVG L E T E+L+RYF R+G ++D V K
Sbjct: 2 HPSKKMNAAELDDHEKGKLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKN 52
>gi|449533488|ref|XP_004173706.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D-like [Cucumis sativus]
Length = 462
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 27/131 (20%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D+ + RG GF+ F+ ++ ++ D H + G TV RA +E+ P R S+
Sbjct: 39 RDKITSRPRGFGFVVFSDPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPA-RASNSNG 97
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
R KK FVG LP T E + YF
Sbjct: 98 RNSGGSGGGNMRT--------------------------KKXFVGGLPPTLTEEGFKEYF 131
Query: 123 SRFGRILDVYV 133
+G + DV V
Sbjct: 132 EAYGHVTDVVV 142
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFI+F + ++V+ ++ T H+L G V V RA PK+
Sbjct: 145 DQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKD 190
>gi|348508134|ref|XP_003441610.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 3
[Oreochromis niloticus]
Length = 351
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A VE ++ HEL T+ A P+ + V R
Sbjct: 55 RDPVTKRSRGFGFVTYAEQAGVEKVLAQNRHELDSKTIDPKVAFPRRAQPKLVTRT---- 110
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 111 ----------------------------------------KKIFVGGLSVNTTIEDVKQY 130
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 131 FDQFGKVDDAML 142
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 145 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 190
>gi|345489601|ref|XP_001600266.2| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like isoform
1 [Nasonia vitripennis]
Length = 376
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+FVG L E T E+L+RYFSR+G ++D V K
Sbjct: 14 KLFVGGLSWETTQENLQRYFSRYGEVIDCVVMK 46
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+F+G LP T DLR +F RFG++++V +
Sbjct: 104 KVFLGGLPSNVTETDLRSFFQRFGKVMEVVI 134
>gi|410922315|ref|XP_003974628.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 1
[Takifugu rubripes]
Length = 348
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ T HEL T+ A P+ + V R
Sbjct: 53 RDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTIEDVKQY 128
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 129 FDQFGKVDDAML 140
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 143 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 188
>gi|348516192|ref|XP_003445623.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Oreochromis
niloticus]
Length = 329
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ T HEL T+ A P+ + V R
Sbjct: 53 RDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTIEDVKQY 128
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 129 FDQFGKVDDAML 140
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 143 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 188
>gi|255086059|ref|XP_002508996.1| predicted protein [Micromonas sp. RCC299]
gi|226524274|gb|ACO70254.1| predicted protein [Micromonas sp. RCC299]
Length = 131
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
K+FVGRL E +R +F++FG +LDVY+P
Sbjct: 82 KVFVGRLEPSVPVETIREHFAQFGEVLDVYMP 113
>gi|357447963|ref|XP_003594257.1| RNA-binding protein, putative [Medicago truncatula]
gi|355483305|gb|AES64508.1| RNA-binding protein, putative [Medicago truncatula]
Length = 411
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++VE ++ T HEL G V V RA PK+
Sbjct: 70 DHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKD 115
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
KKIFVG L T D + YF +FG I DV V
Sbjct: 36 KKIFVGGLASTVTESDFKNYFDQFGTITDVVV 67
>gi|312089498|ref|XP_003146269.1| hypothetical protein LOAG_10696 [Loa loa]
Length = 113
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K++VG LPQ+AT+++L F+RFGRI V+V +R
Sbjct: 11 KVYVGGLPQDATSQELEDAFNRFGRIRKVWVARR 44
>gi|147856810|emb|CAN81343.1| hypothetical protein VITISV_008697 [Vitis vinifera]
Length = 536
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 28/157 (17%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHELGGST--VVVDRATPKEDDFRPVGRMSHGG 61
D + +G GF+ F + M + + + S+ + + ATP++ SHGG
Sbjct: 100 DANTGRSKGYGFVRFGDENERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSHGG 159
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
Y + A + + G+S + IFVG L + EDLR+
Sbjct: 160 YASNGASVQS---------------------DGDS---MNTTIFVGGLDPNVSDEDLRQP 195
Query: 122 FSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
FS++G I+ V +P K F R+ + K++
Sbjct: 196 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLN 232
>gi|410922317|ref|XP_003974629.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 2
[Takifugu rubripes]
Length = 329
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ T HEL T+ A P+ + V R
Sbjct: 53 RDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTIEDVKQY 128
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 129 FDQFGKVDDAML 140
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 143 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 188
>gi|348508130|ref|XP_003441608.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 1
[Oreochromis niloticus]
Length = 332
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A VE ++ HEL T+ A P+ + V R
Sbjct: 55 RDPVTKRSRGFGFVTYAEQAGVEKVLAQNRHELDSKTIDPKVAFPRRAQPKLVTRT---- 110
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 111 ----------------------------------------KKIFVGGLSVNTTIEDVKQY 130
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 131 FDQFGKVDDAML 142
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 145 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 190
>gi|432899440|ref|XP_004076559.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 2
[Oryzias latipes]
Length = 347
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GFITF S D VE + + HE+ V +A PKE F P
Sbjct: 144 DKTTNRHRGFGFITFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
>gi|270001223|gb|EEZ97670.1| hypothetical protein TcasGA2_TC016215 [Tribolium castaneum]
Length = 443
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+F+G LP T DLR +F+RFG++++V +
Sbjct: 43 KVFLGGLPSNVTETDLRTFFTRFGKVMEVVI 73
>gi|410922321|ref|XP_003974631.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 4
[Takifugu rubripes]
Length = 341
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ T HEL T+ A P+ + V R
Sbjct: 53 RDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTIEDVKQY 128
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 129 FDQFGKVDDAML 140
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 143 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 188
>gi|432112509|gb|ELK35247.1| Heterogeneous nuclear ribonucleoprotein A1 [Myotis davidii]
Length = 168
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 2 RDPNTKRSRGCGFVTYATVEEVDTAMNSRPHKVDGRVVEPKRAVSREDSQRP-------- 53
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 54 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 79
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 80 FEQYGKIEVIEI 91
>gi|307940742|gb|ADN95985.1| G-strand specific single-stranded telomere-binding protein 3
[Nicotiana tabacum]
Length = 339
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GFIT+ V+ ++ + H + V + R PK
Sbjct: 48 KDRHTGRPRGFGFITYEDPSVVDTVIAEYHIINDKQVEIKRTIPK--------------- 92
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G ES KKIFVG +P T ++ + +F
Sbjct: 93 -----------------------------GSAESKDFKTKKIFVGGIPTTMTEDEFKNFF 123
Query: 123 SRFGRILD 130
S+FG++ +
Sbjct: 124 SKFGKVTE 131
>gi|195117176|ref|XP_002003125.1| GI24040 [Drosophila mojavensis]
gi|193913700|gb|EDW12567.1| GI24040 [Drosophila mojavensis]
Length = 423
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V + L H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPGNVNHVLQSGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F R+G++ +V +
Sbjct: 116 FGRYGKVTEVVI 127
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|313225133|emb|CBY20926.1| unnamed protein product [Oikopleura dioica]
Length = 552
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 79 GAPTLYD-HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--K 135
G P ++ P G ES+ + ++FVG LP+ T E +R+ F +FG + +VY+P K
Sbjct: 93 GKPVEFEPDPEKEEGSQESTGQ--SRLFVGGLPEAITQEQVRQMFQKFGEVKEVYIPQGK 150
Query: 136 RFWFCHLCGR 145
F F + R
Sbjct: 151 TFAFIKMTNR 160
>gi|432899442|ref|XP_004076560.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 3
[Oryzias latipes]
Length = 328
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GFITF S D VE + + HE+ V +A PKE F P
Sbjct: 144 DKTTNRHRGFGFITFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
>gi|432098521|gb|ELK28236.1| Heterogeneous nuclear ribonucleoprotein A1 [Myotis davidii]
Length = 316
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEVHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G + V +A PK++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGRSCEVRKALPKQE 185
>gi|403296845|ref|XP_003939304.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Saimiri
boliviensis boliviensis]
Length = 320
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGDIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|313240136|emb|CBY32488.1| unnamed protein product [Oikopleura dioica]
Length = 552
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 79 GAPTLYD-HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--K 135
G P ++ P G ES+ + ++FVG LP+ T E +R+ F +FG + +VY+P K
Sbjct: 93 GKPVEFEPDPEKEEGSQESTGQ--SRLFVGGLPEAITQEQVRQMFQKFGEVKEVYIPQGK 150
Query: 136 RFWFCHLCGR 145
F F + R
Sbjct: 151 TFAFIKMTNR 160
>gi|61806598|ref|NP_001013534.1| RNA-binding protein Musashi homolog 1 [Danio rerio]
gi|60688517|gb|AAH90916.1| Musashi homolog 1 (Drosophila) [Danio rerio]
gi|182888902|gb|AAI64361.1| Msi1 protein [Danio rerio]
gi|379056199|dbj|BAL68141.1| RNA-binding protein Musashi homolog 1 Short [Danio rerio]
Length = 330
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ T HEL T+ A P+ + V R
Sbjct: 53 RDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTIEDVKQY 128
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 129 FDQFGKVDDAML 140
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 143 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 188
>gi|410922319|ref|XP_003974630.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 3
[Takifugu rubripes]
Length = 363
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ T HEL T+ A P+ + V R
Sbjct: 53 RDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTIEDVKQY 128
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 129 FDQFGKVDDAML 140
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 143 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 188
>gi|367053249|ref|XP_003657003.1| hypothetical protein THITE_2132116 [Thielavia terrestris NRRL 8126]
gi|347004268|gb|AEO70667.1| hypothetical protein THITE_2132116 [Thielavia terrestris NRRL 8126]
Length = 396
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 34/142 (23%)
Query: 11 RGIGFITFASADSVENLMVDTHEL--GGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 68
RG GF+ F+ + +V+ + G + + ATPK + H G+GA
Sbjct: 176 RGYGFVRFSDESEQQRALVEMQGVYCGNRAMRISTATPKSRSHQ----FGHHGHGATQMM 231
Query: 69 ISAATRYAALGAPTLYDHPG------SFYGRGESSQRIGK----------KIFVGRLPQE 112
P + HPG S+YG+ +Q I +FVG L
Sbjct: 232 ------------PPIAGHPGPMWGVPSYYGQQPFNQHIAPMNQFTDPNNTTVFVGGLSGY 279
Query: 113 ATAEDLRRYFSRFGRILDVYVP 134
T ++LR +F FG I V +P
Sbjct: 280 VTEDELRSFFQGFGEITYVKIP 301
>gi|170060137|ref|XP_001865670.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
gi|167878677|gb|EDS42060.1| heterogeneous nuclear ribonucleoprotein 27C [Culex
quinquefasciatus]
Length = 402
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 46/125 (36%)
Query: 11 RGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSH-GGYGAYNAY 68
RG GF+TFA ++VE + + H L G T+ PK + R + + GGY
Sbjct: 60 RGFGFVTFADPENVERALENGPHTLDGRTI-----DPKPCNPRSLHKPKRTGGY------ 108
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
K+F+G LP T DLR +FSR+G +
Sbjct: 109 ---------------------------------PKVFLGGLPPNITETDLRSFFSRYGNV 135
Query: 129 LDVYV 133
++V +
Sbjct: 136 MEVVI 140
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L+RYF R+G ++D V K
Sbjct: 20 KLFVGGLSWETTQENLQRYFGRYGEVIDCVVMKN 53
>gi|379056197|dbj|BAL68140.1| RNA-binding protein Musashi homolog 1 Long [Danio rerio]
Length = 349
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ T HEL T+ A P+ + V R
Sbjct: 53 RDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTIEDVKQY 128
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 129 FDQFGKVDDAML 140
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 143 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 188
>gi|357119205|ref|XP_003561336.1| PREDICTED: uncharacterized protein LOC100827239 [Brachypodium
distachyon]
Length = 314
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 10 HRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATPK 47
HRG GF+TF+ +VE+ + + H EL G T+ V+RA PK
Sbjct: 47 HRGFGFVTFSDPRAVESAISEMHTKELDGRTISVNRAEPK 86
>gi|125532323|gb|EAY78888.1| hypothetical protein OsI_33991 [Oryza sativa Indica Group]
Length = 305
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ ++ RG GFITF + D+V+ ++ T H+L G V V RA P+E
Sbjct: 3 DQNTQRPRGFGFITFDAEDAVDRVLHKTFHDLSGKMVEVKRALPRE 48
>gi|363752183|ref|XP_003646308.1| hypothetical protein Ecym_4446 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889943|gb|AET39491.1| hypothetical protein Ecym_4446 [Eremothecium cymbalariae
DBVPG#7215]
Length = 855
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
S + I KI V LP EAT +D+ FS FG++ V VPK+F
Sbjct: 723 SKKNINGKIIVKNLPFEATRKDIFELFSSFGQLKSVRVPKKF 764
>gi|343171900|gb|AEL98654.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 339
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 5 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 50
>gi|432899438|ref|XP_004076558.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 1
[Oryzias latipes]
Length = 328
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GFITF S D VE + + HE+ V +A PKE F P
Sbjct: 144 DKTTNRHRGFGFITFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
>gi|390464603|ref|XP_003733247.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like, partial [Callithrix jacchus]
Length = 288
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
S+ KKIFVG + ++ LR Y
Sbjct: 99 ----------------------------------SAHLTVKKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|302785051|ref|XP_002974297.1| hypothetical protein SELMODRAFT_101375 [Selaginella moellendorffii]
gi|302807955|ref|XP_002985671.1| hypothetical protein SELMODRAFT_122630 [Selaginella moellendorffii]
gi|300146580|gb|EFJ13249.1| hypothetical protein SELMODRAFT_122630 [Selaginella moellendorffii]
gi|300157895|gb|EFJ24519.1| hypothetical protein SELMODRAFT_101375 [Selaginella moellendorffii]
Length = 187
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 57/160 (35%), Gaps = 37/160 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ + RG GF++FA + + + + H + G V +A P+ D+ + + R S
Sbjct: 39 KDRNTGRARGFGFVSFADPSAADMAVAEKHTINGRLVEAKKAVPR-DEQQTIPRSSISSG 97
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
G T KKIFVG L T E+ R YF
Sbjct: 98 GQSPGGGQGRT----------------------------KKIFVGGLASTVTEEEFRGYF 129
Query: 123 SRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFSK 154
+FG I D V P+ F F + K
Sbjct: 130 EQFGTISDAVVMYDHTTQRPRGFGFITFDSEDSVEAVLMK 169
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPK 47
D ++ RG GFITF S DSVE +++ + HEL V V RA P+
Sbjct: 143 DHTTQRPRGFGFITFDSEDSVEAVLMKSFHELKDKMVEVKRAVPR 187
>gi|147781769|emb|CAN74486.1| hypothetical protein VITISV_029928 [Vitis vinifera]
Length = 434
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
IFVG L E T EDLR+ FS+FG ++ V +P K F R+ + +++
Sbjct: 315 IFVGGLDSEVTDEDLRQSFSQFGEVVSVKIPVGKGCGFVQFANRNSAEDALQRLN 369
>gi|291410919|ref|XP_002721735.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|426247087|ref|XP_004017318.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|193599206|ref|XP_001946593.1| PREDICTED: hypothetical protein LOC100165303 [Acyrthosiphon pisum]
Length = 560
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
+ GS+ G +S + +++F+G++P E DLR F +FG +LDV + K
Sbjct: 404 NQSGSYNGMFQSDE---QQLFIGKIPPEVQESDLRNLFEKFGNLLDVRIMK 451
>gi|291394513|ref|XP_002713753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|75517570|gb|AAI03708.1| HNRPA1 protein [Homo sapiens]
Length = 267
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|89269835|emb|CAJ82537.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Xenopus (Silurana)
tropicalis]
Length = 327
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVE-NLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S D V+ ++ H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSSMDEVDASMAARPHTIDGRVVEPKRAVAREESAKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLREY 119
Query: 122 FSRFGRILDVYV 133
F +G+I + +
Sbjct: 120 FEEYGKIESIEI 131
>gi|329112537|ref|NP_001016926.2| heterogeneous nuclear ribonucleoprotein A2/B1 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 328
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVE-NLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S D V+ ++ H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSSMDEVDASMAARPHTIDGRVVEPKRAVAREESAKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLREY 119
Query: 122 FSRFGRILDVYV 133
F +G+I + +
Sbjct: 120 FEEYGKIESIEI 131
>gi|256073766|ref|XP_002573199.1| rna-binding protein musashi-related [Schistosoma mansoni]
Length = 431
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S + E + + HEL G V RA PKE
Sbjct: 155 DKATSRHRGFGFVTFESEQAAEKVCTIHYHELNGKMVEAKRALPKE 200
>gi|353231613|emb|CCD78031.1| rna-binding protein musashi-related [Schistosoma mansoni]
Length = 438
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S + E + + HEL G V RA PKE
Sbjct: 155 DKATSRHRGFGFVTFESEQAAEKVCTIHYHELNGKMVEAKRALPKE 200
>gi|312377573|gb|EFR24379.1| hypothetical protein AND_11086 [Anopheles darlingi]
Length = 405
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L+RYFSR+G ++D V K
Sbjct: 13 KLFVGGLSWETTHENLQRYFSRYGEVIDCVVMKN 46
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 44/124 (35%)
Query: 11 RGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GF+TFA ++V+ + + H L G T+ P+ +P GGY
Sbjct: 53 RGFGFVTFADPENVDRALENGPHTLDGRTIDPKPCNPRSQ-HKP---KRTGGY------- 101
Query: 70 SAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL 129
K+F+G LP T DLR +F R+G ++
Sbjct: 102 --------------------------------PKVFLGGLPPNITETDLRSFFCRYGNVM 129
Query: 130 DVYV 133
+V +
Sbjct: 130 EVVI 133
>gi|296188846|ref|XP_002742529.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Callithrix jacchus]
Length = 320
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDANTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|256081430|ref|XP_002576973.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645372|emb|CCD59901.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 381
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--------KRFWFCHLCG 144
+ + S+ KKIFVG + E T + +R YFS FG++ + +P K + F
Sbjct: 125 KAKPSREPLKKIFVGGIDPEVTEDQIREYFSSFGKVESLDLPYDTQKGKRKHYIFVSFST 184
Query: 145 RSCSRSCFSKVSRNLWTAGCN 165
+ ++ SK ++++ C+
Sbjct: 185 EAAAKKAISKERQDIFGRQCD 205
>gi|148671985|gb|EDL03932.1| mCG15678, isoform CRA_c [Mus musculus]
Length = 335
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 62 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 113
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 114 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 139
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 140 FEQYGKIEVIEI 151
>gi|332658328|gb|AEE83728.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 672
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V + K
Sbjct: 29 DH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 78
>gi|402899736|ref|XP_003912844.1| PREDICTED: RNA-binding protein Musashi homolog 2 [Papio anubis]
Length = 116
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GF+TF + D VE + + HE+ V +A PKE F P
Sbjct: 5 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 55
>gi|343171898|gb|AEL98653.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 339
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ RG GFIT+ S ++V+ ++ T HEL G V V RA PKE
Sbjct: 5 DHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKE 50
>gi|256081434|ref|XP_002576975.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645374|emb|CCD59903.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 380
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--------KRFWFCHLCG 144
+ + S+ KKIFVG + E T + +R YFS FG++ + +P K + F
Sbjct: 125 KAKPSREPLKKIFVGGIDPEVTEDQIREYFSSFGKVESLDLPYDTQKGKRKHYIFVSFST 184
Query: 145 RSCSRSCFSKVSRNLWTAGCN 165
+ ++ SK ++++ C+
Sbjct: 185 EAAAKKAISKERQDIFGRQCD 205
>gi|56753309|gb|AAW24858.1| SJCHGC06087 protein [Schistosoma japonicum]
gi|226469806|emb|CAX70184.1| Heterogeneous nuclear ribonucleoprotein D0 [Schistosoma japonicum]
Length = 390
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--------KRFWFCHLCG 144
+ + S+ +KIFVG + E T + +R YFS FG++ + +P K + F
Sbjct: 133 KAKPSREPLRKIFVGGIDPEVTEDQIREYFSSFGKVESLDLPYDTQKGKRKHYIFVSFST 192
Query: 145 RSCSRSCFSKVSRNLWTAGCN 165
+ +R SK + ++ C+
Sbjct: 193 EAAARKAISKERQEIFGRQCD 213
>gi|351697839|gb|EHB00758.1| Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3
[Heterocephalus glaber]
Length = 236
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++GG V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARLHKVGGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F + G+I
Sbjct: 125 FEQCGKI 131
>gi|329112539|ref|NP_001192271.1| heterogeneous nuclear ribonucleoprotein A2/B1 isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 350
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVE-NLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S D V+ ++ H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSSMDEVDASMAARPHTIDGRVVEPKRAVAREESAKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLREY 119
Query: 122 FSRFGRILDVYV 133
F +G+I + +
Sbjct: 120 FEEYGKIESIEI 131
>gi|226487556|emb|CAX74648.1| Heterogeneous nuclear ribonucleoprotein D0 [Schistosoma japonicum]
Length = 389
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--------KRFWFCHLCG 144
+ + S+ +KIFVG + E T + +R YFS FG++ + +P K + F
Sbjct: 133 KAKPSREPLRKIFVGGIDPEVTEDQIREYFSSFGKVESLDLPYDTQKGKRKHYIFVSFST 192
Query: 145 RSCSRSCFSKVSRNLWTAGCN 165
+ +R SK + ++ C+
Sbjct: 193 EAAARKAISKERQEIFGRQCD 213
>gi|134024345|gb|AAI35351.1| hnrpa2b1 protein [Xenopus (Silurana) tropicalis]
Length = 349
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVE-NLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S D V+ ++ H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSSMDEVDASMAARPHTIDGRVVEPKRAVAREESAKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLREY 119
Query: 122 FSRFGRILDVYV 133
F +G+I + +
Sbjct: 120 FEEYGKIESIEI 131
>gi|395845801|ref|XP_003795610.1| PREDICTED: RNA-binding protein Musashi homolog 2 [Otolemur
garnettii]
Length = 324
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GF+TF S D VE + + HE+ V +A PKE F P
Sbjct: 122 DKTTNRHRGFGFVTFESEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 172
>gi|393904918|gb|EJD73831.1| hypothetical protein, variant [Loa loa]
Length = 145
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K++VG LPQ+AT+++L F+RFGRI V+V +R
Sbjct: 11 KVYVGGLPQDATSQELEDAFNRFGRIRKVWVARR 44
>gi|50305631|ref|XP_452776.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641909|emb|CAH01627.1| KLLA0C12925p [Kluyveromyces lactis]
Length = 570
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF+TF +A SV+ ++ H L G + RA P+E+ + G++ GG
Sbjct: 219 KDTATGRSRGFGFLTFENASSVDEVVKTQHILDGKVIDPKRAIPREEQDK-TGKIFVGGI 277
Query: 63 G 63
G
Sbjct: 278 G 278
>gi|302768509|ref|XP_002967674.1| hypothetical protein SELMODRAFT_69014 [Selaginella
moellendorffii]
gi|300164412|gb|EFJ31021.1| hypothetical protein SELMODRAFT_69014 [Selaginella
moellendorffii]
Length = 138
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATP 46
MP DQG++ HRG GF+T+ D M + H EL G + V+ A P
Sbjct: 27 MPLDQGTQKHRGFGFVTYLERDDAAAAMDNMHNSELFGKVLTVNYAQP 74
>gi|291389294|ref|XP_002711081.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Oryctolagus
cuniculus]
Length = 371
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|82621158|gb|ABB86267.1| DNA binding protein ACBF-like [Solanum tuberosum]
Length = 372
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVS 156
IFVG L + T E+LR+ F++FG ++ V +P K F RS ++ K+S
Sbjct: 246 IFVGGLDSDVTDEELRQSFTQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLS 300
>gi|223646910|gb|ACN10213.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
gi|223672773|gb|ACN12568.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 336
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KR--FWFCHLCGRSCSRSCFS 153
KKIFVG L EAT E +R YF FG I + +P KR F F + + C
Sbjct: 166 KKIFVGGLNPEATEETIREYFGTFGEIESIELPVDPKFKKRRGFIFITFKEEATVKKCLE 225
Query: 154 KVSRNL 159
K N+
Sbjct: 226 KKFHNV 231
>gi|426372865|ref|XP_004053334.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Gorilla gorilla gorilla]
Length = 306
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 172 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 223
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 224 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 249
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 250 FEQYGKI 256
>gi|357145619|ref|XP_003573706.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Brachypodium
distachyon]
Length = 347
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 44/128 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD+ ++ RG GFITF+ V+ ++ D H + G V + R PK
Sbjct: 47 KDRYTQKPRGFGFITFSDPAIVDRVIEDNHVIDGKQVEIKRTIPK--------------- 91
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
GA L D KKIFVG L ++ + +F
Sbjct: 92 ----------------GAAPLKDFK-------------TKKIFVGGLVSTLKDDEFKDFF 122
Query: 123 SRFGRILD 130
S+FG++++
Sbjct: 123 SKFGKVVE 130
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV---DTHELGGSTVVVDRATPKED-------DFR 52
+D + RG GFI F + +V+ L+ + +L G+ V + +A PK+ D +
Sbjct: 135 RDHSTNKSRGFGFIVFDAEKTVDELLAKKGNMIDLDGTQVEIKKAEPKKPSNPPHSFDNK 194
Query: 53 PVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGES 96
P R GY +N + Y+ G+ Y PGSF R S
Sbjct: 195 PRSRPHADGYDGFN------SSYSYGGSLAPYRSPGSFGARPSS 232
>gi|317033242|ref|XP_001395129.2| mRNA binding post-transcriptional regulator (Csx1) [Aspergillus
niger CBS 513.88]
gi|317033244|ref|XP_003188853.1| mRNA binding post-transcriptional regulator (Csx1) [Aspergillus
niger CBS 513.88]
Length = 399
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 18/137 (13%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHEL--GGSTVVVDRATPKEDDFRPVGRMSHGG 61
D S RG GF+ F+ + + + + + G + + ATPK S G
Sbjct: 196 DPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPKNKG------PSLGA 249
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI----GKKIFVGRLPQEATAED 117
GA A Y +GAP P FYG + + +FVG L T ++
Sbjct: 250 AGAM-GMPGPAGMYPPMGAP-----PMGFYGAPQPMNQFTDPNNTTVFVGGLSGYVTEDE 303
Query: 118 LRRYFSRFGRILDVYVP 134
LR +F FG I V +P
Sbjct: 304 LRSFFQGFGEITYVKIP 320
>gi|291389273|ref|XP_002711072.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Oryctolagus cuniculus]
Length = 320
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|184185549|gb|ACC68948.1| heterogeneous nuclear ribonucleoprotein A1 (predicted) [Rhinolophus
ferrumequinum]
Length = 299
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|8393547|ref|NP_058944.1| heterogeneous nuclear ribonucleoprotein A1 [Rattus norvegicus]
gi|133255|sp|P04256.3|ROA1_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; Short=HDP; AltName: Full=Single-strand
RNA-binding protein; AltName: Full=hnRNP core protein A1
gi|204580|gb|AAA41314.1| helix destabilizing protein [Rattus norvegicus]
Length = 320
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|221220742|gb|ACM09032.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 336
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KR--FWFCHLCGRSCSRSCFS 153
KKIFVG L EAT E +R YF FG I + +P KR F F + + C
Sbjct: 166 KKIFVGGLNPEATEETIREYFGTFGEIESIELPVDLKFKKRRGFIFITFKEEATVKKCLE 225
Query: 154 KVSRNL 159
K N+
Sbjct: 226 KKFHNV 231
>gi|426341485|ref|XP_004036065.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Gorilla gorilla gorilla]
Length = 320
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|363740152|ref|XP_415271.3| PREDICTED: RNA-binding protein Musashi homolog 1 [Gallus gallus]
Length = 379
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 49/133 (36%), Gaps = 45/133 (33%)
Query: 8 KAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYN 66
+ RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 92 RQRRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT--------- 142
Query: 67 AYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG 126
KKIFVG L T ED+++YF +FG
Sbjct: 143 -----------------------------------KKIFVGGLSVNTTVEDVKQYFEQFG 167
Query: 127 RILDVYVPKRFWF 139
++L V K F F
Sbjct: 168 KLLFANVNKGFGF 180
>gi|332206587|ref|XP_003252377.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Nomascus leucogenys]
Length = 321
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 48 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAISREDSQRP-------- 99
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
+A+++ KKIFVG + ++ LR Y
Sbjct: 100 ----DAHLTV------------------------------KKIFVGGIKEDTEEHHLRGY 125
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 126 FEQYGKIEVIEI 137
>gi|74204146|dbj|BAE39838.1| unnamed protein product [Mus musculus]
Length = 320
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|355766014|gb|EHH62484.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Macaca
fascicularis]
Length = 372
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|195387610|ref|XP_002052487.1| GJ21323 [Drosophila virilis]
gi|194148944|gb|EDW64642.1| GJ21323 [Drosophila virilis]
Length = 421
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V + L H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPANVNHVLQSGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F R+G++ +V +
Sbjct: 116 FGRYGKVTEVVI 127
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKN 41
>gi|358374531|dbj|GAA91122.1| mRNA binding post-transcriptional regulator [Aspergillus kawachii
IFO 4308]
Length = 402
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 18/137 (13%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHEL--GGSTVVVDRATPKEDDFRPVGRMSHGG 61
D S RG GF+ F+ + + + + + G + + ATPK S G
Sbjct: 195 DPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPKNKG------PSLGA 248
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI----GKKIFVGRLPQEATAED 117
GA A Y +GAP P FYG + + +FVG L T ++
Sbjct: 249 AGAM-GMPGPAGMYPPMGAP-----PMGFYGAPQPMNQFTDPNNTTVFVGGLSGYVTEDE 302
Query: 118 LRRYFSRFGRILDVYVP 134
LR +F FG I V +P
Sbjct: 303 LRSFFQGFGEITYVKIP 319
>gi|350637619|gb|EHA25976.1| hypothetical protein ASPNIDRAFT_212792 [Aspergillus niger ATCC
1015]
Length = 403
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 18/137 (13%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHEL--GGSTVVVDRATPKEDDFRPVGRMSHGG 61
D S RG GF+ F+ + + + + + G + + ATPK S G
Sbjct: 196 DPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPKNKG------PSLGA 249
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI----GKKIFVGRLPQEATAED 117
GA A Y +GAP P FYG + + +FVG L T ++
Sbjct: 250 AGAM-GMPGPAGMYPPMGAP-----PMGFYGAPQPMNQFTDPNNTTVFVGGLSGYVTEDE 303
Query: 118 LRRYFSRFGRILDVYVP 134
LR +F FG I V +P
Sbjct: 304 LRSFFQGFGEITYVKIP 320
>gi|134079837|emb|CAK40970.1| unnamed protein product [Aspergillus niger]
Length = 402
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 18/137 (13%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDTHEL--GGSTVVVDRATPKEDDFRPVGRMSHGG 61
D S RG GF+ F+ + + + + + G + + ATPK S G
Sbjct: 195 DPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPKNKG------PSLGA 248
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI----GKKIFVGRLPQEATAED 117
GA A Y +GAP P FYG + + +FVG L T ++
Sbjct: 249 AGAM-GMPGPAGMYPPMGAP-----PMGFYGAPQPMNQFTDPNNTTVFVGGLSGYVTEDE 302
Query: 118 LRRYFSRFGRILDVYVP 134
LR +F FG I V +P
Sbjct: 303 LRSFFQGFGEITYVKIP 319
>gi|444513904|gb|ELV10489.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Tupaia
chinensis]
Length = 432
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 42 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 94 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 119
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 120 FEQYGKI 126
>gi|390178412|ref|XP_003736644.1| GA14206, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859438|gb|EIM52717.1| GA14206, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 319
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KRFWFCHLC 143
KIFVG L E + E+++ YFS+FG I++V +P +R FC +
Sbjct: 136 KIFVGGLTTEISDEEIKTYFSQFGNIVEVEMPFDKQKSQRKGFCFIT 182
>gi|195156455|ref|XP_002019115.1| GL26194 [Drosophila persimilis]
gi|194115268|gb|EDW37311.1| GL26194 [Drosophila persimilis]
Length = 223
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYV 133
F R+G++ +V +
Sbjct: 116 FGRYGKVTEVVI 127
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+FVG L E T E+L RYF RFG I+D V K
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMK 40
>gi|148671983|gb|EDL03930.1| mCG15678, isoform CRA_a [Mus musculus]
Length = 371
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 45 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 96
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 97 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 122
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 123 FEQYGKI 129
>gi|189423423|ref|YP_001950600.1| RNP-1 like RNA-binding protein [Geobacter lovleyi SZ]
gi|189419682|gb|ACD94080.1| RNP-1 like RNA-binding protein [Geobacter lovleyi SZ]
Length = 109
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
+ K+++VG LP EATA+DLRR FS G + V++
Sbjct: 1 MAKELYVGHLPYEATADDLRRMFSVAGTVTSVHI 34
>gi|395835057|ref|XP_003790500.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Otolemur
garnettii]
Length = 373
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|390465683|ref|XP_003733453.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Callithrix jacchus]
Length = 320
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|116787034|gb|ABK24349.1| unknown [Picea sitchensis]
Length = 264
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
D ++ HRG GFIT+ S D+V+ ++ T H+L TV V RA PK+
Sbjct: 3 DHTTQRHRGFGFITYDSEDAVDKVLQQTFHQLKEKTVEVKRAIPKD 48
>gi|109131409|ref|XP_001082949.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
3 [Macaca mulatta]
gi|297304279|ref|XP_001082690.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Macaca mulatta]
Length = 320
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|14043070|ref|NP_112420.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Homo sapiens]
gi|397472158|ref|XP_003807623.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Pan
paniscus]
gi|288558857|sp|P09651.5|ROA1_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand RNA-binding
protein; AltName: Full=hnRNP core protein A1
gi|119617168|gb|EAW96762.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_b [Homo
sapiens]
gi|119617174|gb|EAW96768.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_b [Homo
sapiens]
gi|380812310|gb|AFE78029.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Macaca
mulatta]
Length = 372
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|335347347|ref|NP_001229438.1| heterogeneous nuclear ribonucleoprotein A1 [Equus caballus]
gi|410964601|ref|XP_003988842.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Felis catus]
gi|426224339|ref|XP_004006329.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
3 [Ovis aries]
gi|74222222|dbj|BAE26919.1| unnamed protein product [Mus musculus]
gi|149031878|gb|EDL86790.1| rCG50547, isoform CRA_b [Rattus norvegicus]
gi|149031880|gb|EDL86792.1| rCG50547, isoform CRA_b [Rattus norvegicus]
Length = 373
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|85060507|ref|NP_001034218.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Mus musculus]
gi|59808855|gb|AAH89340.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|62531241|gb|AAH92395.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|74144667|dbj|BAE27318.1| unnamed protein product [Mus musculus]
gi|74185136|dbj|BAE39169.1| unnamed protein product [Mus musculus]
gi|74219989|dbj|BAE40574.1| unnamed protein product [Mus musculus]
Length = 373
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|402908388|ref|XP_003916925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Papio anubis]
gi|402908390|ref|XP_003916926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Papio anubis]
Length = 351
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|195571111|ref|XP_002103547.1| GD18916 [Drosophila simulans]
gi|194199474|gb|EDX13050.1| GD18916 [Drosophila simulans]
Length = 669
Score = 41.2 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 93 RGESSQRIG--KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
R ++Q+ G +++F+G +P A+ +DLR FSRFG +L++ +
Sbjct: 482 RSSNTQQFGDNQQLFLGNIPHHASEDDLREIFSRFGNVLELRI 524
>gi|90075098|dbj|BAE87229.1| unnamed protein product [Macaca fascicularis]
Length = 304
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|355564301|gb|EHH20801.1| Heterogeneous nuclear ribonucleoprotein A1, partial [Macaca
mulatta]
Length = 372
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|317419099|emb|CBN81137.1| RNA-binding protein Musashi homolog 1 [Dicentrarchus labrax]
Length = 362
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A VE ++ HEL T+ A P+ + V R
Sbjct: 55 RDPVTKRSRGFGFVTYAEQAGVEKVLAQNRHELDSKTIDPKVAFPRRAQPKLVTRT---- 110
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED++ Y
Sbjct: 111 ----------------------------------------KKIFVGGLSVNTTIEDVKHY 130
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 131 FDQFGKVDDAML 142
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 145 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 190
>gi|119617171|gb|EAW96765.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_e [Homo
sapiens]
Length = 317
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|111306451|gb|AAI21134.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
Length = 320
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|403271005|ref|XP_003927441.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Saimiri
boliviensis boliviensis]
Length = 320
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|225680657|gb|EEH18941.1| heterogeneous nuclear ribonucleoprotein A/B [Paracoccidioides
brasiliensis Pb03]
gi|226292332|gb|EEH47752.1| heterogeneous nuclear ribonucleoprotein A1 [Paracoccidioides
brasiliensis Pb18]
Length = 493
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
KIFVG + QEAT +D +++F +FGR++D + P+ F F + + S
Sbjct: 44 KIFVGGVSQEATEQDFKQFFMQFGRVVDATLMIDKDSGRPRGFGFVTFDSEAAVEATLS 102
>gi|190360152|sp|P0C7M2.1|RA1L3_HUMAN RecName: Full=Putative heterogeneous nuclear ribonucleoprotein
A1-like 3; Short=hnRNP A1-like 3; AltName: Full=hnRNP
core protein A1-like 3
gi|119621694|gb|EAX01289.1| hCG2020860, isoform CRA_b [Homo sapiens]
gi|119621695|gb|EAX01290.1| hCG2020860, isoform CRA_b [Homo sapiens]
Length = 320
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|402592937|gb|EJW86864.1| ELAV-type RNA binding protein variant B [Wuchereria bancrofti]
Length = 509
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFW-- 138
P +Y HP + R +K+FVG L ++ T +D+R F++FG I D V K
Sbjct: 90 PQMY-HPVQMK-PADIENRNERKLFVGMLNKKLTEDDVREMFAQFGHIEDCTVLKDSEGK 147
Query: 139 -----FCHLCGRSCSRSCFSKVSRNLWTAGCNR 166
F RSC++ +V + GC++
Sbjct: 148 SRGCAFVTFAHRSCAQQAIKQVHLSQTMEGCSK 180
>gi|148671986|gb|EDL03933.1| mCG15678, isoform CRA_d [Mus musculus]
Length = 326
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 53 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 104
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 105 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 130
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 131 FEQYGKIEVIEI 142
>gi|4504445|ref|NP_002127.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Homo sapiens]
gi|6754220|ref|NP_034577.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Mus musculus]
gi|114052384|ref|NP_001039376.1| heterogeneous nuclear ribonucleoprotein A1 [Bos taurus]
gi|116175259|ref|NP_001070686.1| heterogeneous nuclear ribonucleoprotein A1 [Sus scrofa]
gi|148529006|ref|NP_001091892.1| heterogeneous nuclear ribonucleoprotein A1-like 1 [Pan troglodytes]
gi|308193354|ref|NP_001184040.1| heterogeneous nuclear ribonucleoprotein A1 [Pan troglodytes]
gi|73996139|ref|XP_848386.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Canis lupus familiaris]
gi|332864208|ref|XP_003318234.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Pan troglodytes]
gi|354503661|ref|XP_003513899.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Cricetulus
griseus]
gi|402886231|ref|XP_003906538.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Papio
anubis]
gi|410058477|ref|XP_003954396.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Pan troglodytes]
gi|410964599|ref|XP_003988841.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 1
[Felis catus]
gi|426224335|ref|XP_004006327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Ovis aries]
gi|1350822|sp|P49312.2|ROA1_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=HDP-1; AltName:
Full=Helix-destabilizing protein; AltName:
Full=Single-strand-binding protein; AltName:
Full=Topoisomerase-inhibitor suppressed; AltName:
Full=hnRNP core protein A1
gi|156637352|sp|A5A6H4.1|ROA1_PANTR RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand-binding protein;
AltName: Full=hnRNP core protein A1
gi|172046785|sp|P09867.2|ROA1_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand RNA-binding
protein; AltName: Full=Unwinding protein 1; Short=UP1;
AltName: Full=hnRNP core protein A1
gi|70819|pir||DDRT helix-destabilizing protein - rat
gi|87651|pir||S04617 heterogeneous ribonuclear particle protein A1 - human
gi|193324|gb|AAA37633.1| RNA binding protein [Mus musculus]
gi|296650|emb|CAA31191.1| hnrnp a1 protein [Homo sapiens]
gi|496898|emb|CAA56072.1| hnRNPcore protein A1 [Homo sapiens]
gi|1711242|dbj|BAA13162.1| TIS [Mus musculus]
gi|12803103|gb|AAH02355.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|12841583|dbj|BAB25267.1| unnamed protein product [Mus musculus]
gi|15082486|gb|AAH12158.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|16307046|gb|AAH09600.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|21707258|gb|AAH33714.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|26353286|dbj|BAC40273.1| unnamed protein product [Mus musculus]
gi|47125420|gb|AAH70315.1| HNRPA1 protein [Homo sapiens]
gi|49257442|gb|AAH73162.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|49522847|gb|AAH74502.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|51490837|emb|CAH18571.1| heterogeneous nuclear ribonucleoprotein A1 [Pan troglodytes]
gi|51873929|gb|AAH80675.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|53236995|gb|AAH83136.1| Heterogeneous nuclear ribonucleoprotein A1 [Mus musculus]
gi|55930978|gb|AAH52296.1| Heterogeneous nuclear ribonucleoprotein A1 [Homo sapiens]
gi|56971262|gb|AAH88150.1| Hnrpa1 protein [Rattus norvegicus]
gi|67968511|dbj|BAE00617.1| unnamed protein product [Macaca fascicularis]
gi|74180018|dbj|BAE36552.1| unnamed protein product [Mus musculus]
gi|74183107|dbj|BAE22518.1| unnamed protein product [Mus musculus]
gi|74184983|dbj|BAE39104.1| unnamed protein product [Mus musculus]
gi|74189079|dbj|BAE39302.1| unnamed protein product [Mus musculus]
gi|74204144|dbj|BAE39837.1| unnamed protein product [Mus musculus]
gi|74204330|dbj|BAE39920.1| unnamed protein product [Mus musculus]
gi|74204859|dbj|BAE20929.1| unnamed protein product [Mus musculus]
gi|74214152|dbj|BAE40333.1| unnamed protein product [Mus musculus]
gi|74214339|dbj|BAE40409.1| unnamed protein product [Mus musculus]
gi|86823844|gb|AAI05414.1| Heterogeneous nuclear ribonucleoprotein A1 [Bos taurus]
gi|115371763|gb|ABI96206.1| ROA1 [Sus scrofa]
gi|119617167|gb|EAW96761.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_a [Homo
sapiens]
gi|119617175|gb|EAW96769.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_a [Homo
sapiens]
gi|119617176|gb|EAW96770.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_a [Homo
sapiens]
gi|146741382|dbj|BAF62347.1| heterogeneous nuclear ribonucleoprotein A1, transcript variant 1
[Pan troglodytes verus]
gi|148671984|gb|EDL03931.1| mCG15678, isoform CRA_b [Mus musculus]
gi|149031879|gb|EDL86791.1| rCG50547, isoform CRA_c [Rattus norvegicus]
gi|149031881|gb|EDL86793.1| rCG50547, isoform CRA_c [Rattus norvegicus]
gi|158255662|dbj|BAF83802.1| unnamed protein product [Homo sapiens]
gi|208966454|dbj|BAG73241.1| heterogeneous nuclear ribonucleoprotein A1 [synthetic construct]
gi|296487907|tpg|DAA30020.1| TPA: heterogeneous nuclear ribonucleoprotein A1 [Bos taurus]
gi|335772612|gb|AEH58124.1| heterogeneous nuclear ribonucleoprotein A-like protein [Equus
caballus]
gi|380812306|gb|AFE78027.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Macaca
mulatta]
gi|380812308|gb|AFE78028.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Macaca
mulatta]
Length = 320
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|403255345|ref|XP_003920400.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Saimiri
boliviensis boliviensis]
Length = 320
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|395540858|ref|XP_003772367.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Sarcophilus
harrisii]
Length = 372
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|322796762|gb|EFZ19195.1| hypothetical protein SINV_16494 [Solenopsis invicta]
Length = 138
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
K+F+G LP T DLR YF+RFG++++V +
Sbjct: 98 KVFLGGLPSNVTETDLRSYFTRFGKVMEVVI 128
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135
K+FVG L E T E+L+RYF R+G ++D V K
Sbjct: 8 KLFVGGLSWETTQENLQRYFGRYGEVIDCVVMK 40
>gi|301121326|ref|XP_002908390.1| heterogeneous nuclear ribonucleoprotein A1, putative [Phytophthora
infestans T30-4]
gi|262103421|gb|EEY61473.1| heterogeneous nuclear ribonucleoprotein A1, putative [Phytophthora
infestans T30-4]
Length = 632
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD S+ RG GFIT+A V+ + H L V RA P+ + R +G +
Sbjct: 41 KDPISRRSRGFGFITYADPLCVDRALAQPNHILDSRRVEAKRAVPRAESMRDIGNSASSS 100
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
+ IS+ + +A+GA KKIFVG L E D ++Y
Sbjct: 101 RVNGSTSISSISANSAVGA--------------------TKKIFVGGLHYETKDADFKKY 140
Query: 122 FSRFGRILDVYV 133
F ++G+++ V
Sbjct: 141 FMQYGKVVSAEV 152
>gi|291190904|ref|NP_001167419.1| RNA-binding protein 4 [Salmo salar]
gi|223648750|gb|ACN11133.1| RNA-binding protein 4 [Salmo salar]
Length = 316
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVS 156
R KI+VG +P+ TA +R F FG++++ + K F F H+ + + SK++
Sbjct: 75 RNATKIYVGNVPEGTTAAKIRELFQPFGKVVECDIVKNFAFVHMQRENEAYEAISKLN 132
>gi|221221726|gb|ACM09524.1| RNA-binding protein 4B [Salmo salar]
gi|221222322|gb|ACM09822.1| RNA-binding protein 4B [Salmo salar]
Length = 166
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KIF+G +P+EA ++++ FS++G + + + K F F H+ R +
Sbjct: 3 KIFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSA 48
>gi|145334517|ref|NP_001078604.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332005307|gb|AED92690.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 421
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 22/149 (14%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGST--VVVDRATPKEDDFRPVGRMSHGGYGAYNAY 68
+G GF+ FA M + + L ST + + ATPK++ G Y
Sbjct: 158 KGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN------------VGVQQQY 205
Query: 69 ISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI 128
++ T +A+ AP Y S I V L Q T E+L++ FS+ G +
Sbjct: 206 VTKVTVPSAVAAPV------QAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEV 259
Query: 129 LDVYVP--KRFWFCHLCGRSCSRSCFSKV 155
+ V +P K + + R + ++
Sbjct: 260 IYVKIPATKGYGYVQFKTRPSAEEAVQRM 288
>gi|2244786|emb|CAB10209.1| ribonucleoprotein like protein [Arabidopsis thaliana]
gi|7268135|emb|CAB78472.1| ribonucleoprotein like protein [Arabidopsis thaliana]
Length = 406
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ + RG GF++F S D+V++++ T H+L G V V RA PK+
Sbjct: 139 DQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 184
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV--------PKRFWFCHLCGRSCSRSCFS 153
KKIFVG LP T E+ R+YF +G + DV + P+ F F S
Sbjct: 105 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 164
Query: 154 KVSRNL 159
K +L
Sbjct: 165 KTFHDL 170
>gi|449677067|ref|XP_002163749.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like,
partial [Hydra magnipapillata]
Length = 165
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 13/133 (9%)
Query: 2 PKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
P S + G F+ + D+ E + + E G V+ KED H G
Sbjct: 24 PVPPSSDNNEGKLFVGGLAWDTTEESLRNYFEKFGEVESVNLKRNKED------LNKHRG 77
Query: 62 YGAYNAYISAATRYAALG--APTLYD----HPGSFYGRGESSQRIGKKIFVGRLPQEATA 115
+ A+ +++ + L P + D P S G ++ KKIFVG L E T
Sbjct: 78 F-AFVKFVTQESADEVLNQAEPHILDGSKIDPKSACPMGVKPEQRTKKIFVGGLQTETTE 136
Query: 116 EDLRRYFSRFGRI 128
E LR YFS+FG I
Sbjct: 137 EKLREYFSQFGEI 149
>gi|426341487|ref|XP_004036066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
2 [Gorilla gorilla gorilla]
Length = 320
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|47221330|emb|CAF97248.1| unnamed protein product [Tetraodon nigroviridis]
Length = 312
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP------KR--FWFCHLCGRSCSRSCFS 153
KKIFVG L EAT E +R YF FG I ++ +P KR F F + ++ C
Sbjct: 140 KKIFVGGLNPEATEETIREYFGAFGEIENIDLPLDPKSKKRRGFIFITYKEEASAKKCLE 199
Query: 154 K 154
K
Sbjct: 200 K 200
>gi|409082207|gb|EKM82565.1| hypothetical protein AGABI1DRAFT_111169 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200034|gb|EKV49958.1| hypothetical protein AGABI2DRAFT_190388 [Agaricus bisporus var.
bisporus H97]
Length = 289
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
+ +++++GRLP +A +ED++++F FGRI+D V F F
Sbjct: 1 MSRRLYLGRLPPDARSEDVQKFFDGFGRIIDCRVMTGFGFVEF 43
>gi|402908392|ref|XP_003916927.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
3 [Papio anubis]
Length = 343
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 39 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 90
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 91 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 116
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 117 FEQYGKI 123
>gi|398336621|ref|ZP_10521326.1| RNA-binding protein [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 131
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCS 148
KI VG LPQE T ++L++ FS FG + + ++ K GRS S
Sbjct: 12 KISVGNLPQELTEDELKKIFSEFGTVQEAHIKKD----KTTGRSLS 53
>gi|256081432|ref|XP_002576974.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645373|emb|CCD59902.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 392
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 93 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--------KRFWFCHLCG 144
+ + S+ KKIFVG + E T + +R YFS FG++ + +P K + F
Sbjct: 137 KAKPSREPLKKIFVGGIDPEVTEDQIREYFSSFGKVESLDLPYDTQKGKRKHYIFVSFST 196
Query: 145 RSCSRSCFSKVSRNLWTAGCN 165
+ ++ SK ++++ C+
Sbjct: 197 EAAAKKAISKERQDIFGRQCD 217
>gi|296211878|ref|XP_002752596.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Callithrix
jacchus]
Length = 327
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 2 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 53
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 54 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 79
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 80 FEQYGKI 86
>gi|119630796|gb|EAX10391.1| hCG39525, isoform CRA_c [Homo sapiens]
Length = 279
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 28/36 (77%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+++FVGR ++ TA++L ++F ++ ++DV++PK F
Sbjct: 95 REVFVGRCTEDMTADELWQFFCQYKEVVDVFIPKPF 130
>gi|38328245|gb|AAH62235.1| Hnrpa1 protein [Rattus norvegicus]
Length = 313
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|432858970|ref|XP_004069029.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Oryzias
latipes]
Length = 299
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 45/129 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A VE ++ HEL T+ A P+ + V R
Sbjct: 32 RDPVTKRSRGFGFVTYADQAGVEQVLAQNRHELDSKTIDPKVAFPRRAQPKLVTRT---- 87
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 88 ----------------------------------------KKIFVGGLSVNTTIEDVKQY 107
Query: 122 FSRFGRILD 130
F +FG++ D
Sbjct: 108 FDQFGKVDD 116
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF + D VE + + HE+ V +A PKE
Sbjct: 122 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 167
>gi|74220381|dbj|BAE31416.1| unnamed protein product [Mus musculus]
Length = 320
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|324506217|gb|ADY42661.1| Splicing factor, arginine/serine-rich 6 [Ascaris suum]
Length = 163
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K++VG LPQ+AT++++ F+RFGRI V+V +R
Sbjct: 11 KVYVGGLPQDATSQEIEDAFNRFGRIRKVWVARR 44
>gi|321463296|gb|EFX74313.1| hypothetical protein DAPPUDRAFT_307331 [Daphnia pulex]
Length = 393
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 52/137 (37%), Gaps = 53/137 (38%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT------HELGGSTVVVDRATPKEDDFRPVGR 56
KD ++ RG GF+T+A A MVD H + G V RA P++
Sbjct: 77 KDPKTRKSRGFGFVTYARA-----FMVDEAQAARPHRVDGREVEPKRAVPRD-------- 123
Query: 57 MSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAE 116
G+ E+S + KK+FVG L + E
Sbjct: 124 ---------------------------------LIGKPEASSTV-KKLFVGGLRDDVEEE 149
Query: 117 DLRRYFSRFGRILDVYV 133
DL++YFS FG I V V
Sbjct: 150 DLQKYFSTFGPIASVNV 166
>gi|195390399|ref|XP_002053856.1| GJ24112 [Drosophila virilis]
gi|194151942|gb|EDW67376.1| GJ24112 [Drosophila virilis]
Length = 651
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 93 RGESSQRIG--KKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
R ++Q+ G +++F+G +P A+ E+LR+ FSRFG ++D+ +
Sbjct: 473 RPSNAQQFGDNQQLFLGNIPHHASEEELRQLFSRFGNVIDLRI 515
>gi|114577985|ref|XP_001144332.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Pan troglodytes]
Length = 320
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|441632410|ref|XP_003252929.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Nomascus leucogenys]
Length = 426
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 100 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 151
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 152 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 177
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 178 FEQYGKI 184
>gi|119617173|gb|EAW96767.1| heterogeneous nuclear ribonucleoprotein A1, isoform CRA_g [Homo
sapiens]
Length = 319
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 2 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 53
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 54 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 79
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 80 FEQYGKI 86
>gi|31417000|gb|AAH17560.1| MSI2 protein [Homo sapiens]
gi|119614914|gb|EAW94508.1| musashi homolog 2 (Drosophila), isoform CRA_c [Homo sapiens]
Length = 151
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GF+TF + D VE + + HE+ V +A PKE F P
Sbjct: 40 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 90
>gi|50546647|ref|XP_500793.1| YALI0B12276p [Yarrowia lipolytica]
gi|74689812|sp|Q6CEW9.1|MRD1_YARLI RecName: Full=Multiple RNA-binding domain-containing protein 1
gi|49646659|emb|CAG83044.1| YALI0B12276p [Yarrowia lipolytica CLIB122]
Length = 828
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
E+ + I KI + LP EAT +D+++ F FG + V VPK+F
Sbjct: 696 ETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKF 738
>gi|380792669|gb|AFE68210.1| heterogeneous nuclear ribonucleoprotein A1 isoform a, partial
[Macaca mulatta]
Length = 317
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|426223452|ref|XP_004005889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Ovis
aries]
Length = 320
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|395327650|gb|EJF60048.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 333
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 48/123 (39%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
R F+TF SV +MV H L G + RA P+++ R
Sbjct: 39 RCFAFLTFEDPASVNAVMVREHFLDGKIIDPKRAIPRQEHQR------------------ 80
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
K+F+G LP T+E +R YF++FG+++D
Sbjct: 81 ------------------------------ATKLFIGGLPGSVTSESMREYFTQFGKVVD 110
Query: 131 VYV 133
V
Sbjct: 111 ATV 113
>gi|119630795|gb|EAX10390.1| hCG39525, isoform CRA_b [Homo sapiens]
Length = 292
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 28/36 (77%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRF 137
+++FVGR ++ TA++L ++F ++ ++DV++PK F
Sbjct: 108 REVFVGRCTEDMTADELWQFFCQYKEVVDVFIPKPF 143
>gi|440900708|gb|ELR51786.1| hypothetical protein M91_06025, partial [Bos grunniens mutus]
Length = 315
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 42 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 94 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 119
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 120 FEQYGKI 126
>gi|426234977|ref|XP_004011468.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Ovis aries]
Length = 319
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|112421201|ref|NP_001036248.1| heterogeneous nuclear ribonucleoprotein A1 [Macaca mulatta]
gi|2500575|sp|Q28521.3|ROA1_MACMU RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1; AltName: Full=Helix-destabilizing
protein; AltName: Full=Single-strand-binding protein;
AltName: Full=hnRNP core protein A1
gi|1332379|gb|AAB01436.1| hnRNP A1-gamma isoform [Macaca mulatta]
Length = 320
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYV 133
F ++G+I + +
Sbjct: 125 FEQYGKIEVIEI 136
>gi|156402923|ref|XP_001639839.1| predicted protein [Nematostella vectensis]
gi|156226970|gb|EDO47776.1| predicted protein [Nematostella vectensis]
Length = 185
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHL 142
R G ++FVGRLP A DL ++F FGRI D+ + + F F
Sbjct: 3 REGGRVFVGRLPPRANDRDLEKFFKGFGRINDINLKQGFAFVEF 46
>gi|308493016|ref|XP_003108698.1| hypothetical protein CRE_10826 [Caenorhabditis remanei]
gi|308248438|gb|EFO92390.1| hypothetical protein CRE_10826 [Caenorhabditis remanei]
Length = 277
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
+ K++VG LP +AT+++L F RFGRI V+V +R
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARR 37
>gi|242024531|ref|XP_002432681.1| RNA-binding protein squid, putative [Pediculus humanus corporis]
gi|212518151|gb|EEB19943.1| RNA-binding protein squid, putative [Pediculus humanus corporis]
Length = 295
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 78 LGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 133
+ P + + G ES+ +K+FVGRL E T ++LR +FS+FG I V V
Sbjct: 9 MKEPDPQQNGSTENGTTESTNNDDRKLFVGRLSWETTDKELREHFSQFGEIESVSV 64
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134
KIFVG L E + ED+R +F +FG IL+V +P
Sbjct: 114 KIFVGGLDVETSEEDIRNFFGQFGTILEVELP 145
>gi|296209042|ref|XP_002751365.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
1 [Callithrix jacchus]
Length = 375
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDANTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDNEEHHLRDY 124
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 125 FEQYGKI 131
>gi|224055563|ref|XP_002298541.1| predicted protein [Populus trichocarpa]
gi|222845799|gb|EEE83346.1| predicted protein [Populus trichocarpa]
Length = 171
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 52/134 (38%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPK----EDDFRPVGR 56
+ KD+ + RG GF+T+A V+ ++ DTH + G V + R PK DFR
Sbjct: 39 IMKDRKTGQPRGFGFVTYADPSVVDQVIQDTHIINGKQVEIKRTIPKGVVGSKDFRT--- 95
Query: 57 MSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAE 116
+KIFVG +P T +
Sbjct: 96 ---------------------------------------------RKIFVGGIPAVVTED 110
Query: 117 DLRRYFSRFGRILD 130
+ +F++FG + +
Sbjct: 111 EFNEFFTQFGEVTE 124
>gi|302761116|ref|XP_002963980.1| hypothetical protein SELMODRAFT_142186 [Selaginella
moellendorffii]
gi|300167709|gb|EFJ34313.1| hypothetical protein SELMODRAFT_142186 [Selaginella
moellendorffii]
Length = 174
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTH--ELGGSTVVVDRATP 46
MP DQG++ HRG GF+T+ D M + H EL G + V+ A P
Sbjct: 39 MPLDQGTQKHRGFGFVTYLERDDAAAAMDNMHNSELFGKVLTVNYAQP 86
>gi|13436308|gb|AAH04945.1| Unknown (protein for IMAGE:3615335), partial [Homo sapiens]
Length = 298
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 25 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 76
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 77 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 102
Query: 122 FSRFGRI 128
F ++G+I
Sbjct: 103 FEQYGKI 109
>gi|156102324|ref|XP_001616855.1| RNA binding protein [Plasmodium vivax Sal-1]
gi|148805729|gb|EDL47128.1| RNA binding protein, putative [Plasmodium vivax]
Length = 507
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136
K+FVG LP+E E +R F+R+G + +VY+ K
Sbjct: 185 KLFVGSLPKEIAEEQIRNLFNRYGNVTEVYIMKN 218
>gi|49402291|ref|NP_956398.1| heterogeneous nuclear ribonucleoprotein A1 [Danio rerio]
gi|27882514|gb|AAH44442.1| Heterogeneous nuclear ribonucleoprotein A1 [Danio rerio]
Length = 422
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 43/132 (32%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GF+T++S D V M H++ G V RA +ED +P +
Sbjct: 66 KDPNTKRSRGFGFVTYSSVDEVNASMDARPHKVDGRLVEPKRAVSREDSSKPFAHTT--- 122
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG + + LR Y
Sbjct: 123 ---------------------------------------VKKIFVGGIKDDTEENHLRDY 143
Query: 122 FSRFGRILDVYV 133
F +FG+I V +
Sbjct: 144 FDQFGKIEVVEI 155
>gi|297263669|ref|XP_001087753.2| PREDICTED: hypothetical protein LOC699286 [Macaca mulatta]
Length = 696
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 45/132 (34%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 183 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT---- 238
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 239 ----------------------------------------KKIFVGGLSVNTTVEDVKQY 258
Query: 122 FSRFGRILDVYV 133
F +FG++ D +
Sbjct: 259 FEQFGKVDDAML 270
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKE 48
D+ + HRG GF+TF S D VE + + HE+ V +A PKE
Sbjct: 273 DKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 318
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,842,907,508
Number of Sequences: 23463169
Number of extensions: 116993159
Number of successful extensions: 285194
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2184
Number of HSP's successfully gapped in prelim test: 1251
Number of HSP's that attempted gapping in prelim test: 278139
Number of HSP's gapped (non-prelim): 8745
length of query: 171
length of database: 8,064,228,071
effective HSP length: 131
effective length of query: 40
effective length of database: 9,285,520,228
effective search space: 371420809120
effective search space used: 371420809120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 71 (32.0 bits)