Query 030822
Match_columns 171
No_of_seqs 172 out of 1318
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:41:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b7f_A Protein (SXL-lethal pro 99.9 1.2E-25 4.3E-30 159.0 12.7 113 1-165 35-157 (168)
2 4f02_A Polyadenylate-binding p 99.9 1.7E-26 5.9E-31 170.3 8.5 115 1-165 47-169 (213)
3 1fxl_A Paraneoplastic encephal 99.9 1.7E-25 5.7E-30 157.9 12.0 113 1-165 34-156 (167)
4 2cjk_A Nuclear polyadenylated 99.9 1.1E-26 3.7E-31 164.4 5.8 111 1-164 35-153 (167)
5 1l3k_A Heterogeneous nuclear r 99.9 7.5E-26 2.6E-30 164.0 9.7 112 1-158 45-165 (196)
6 3md3_A Nuclear and cytoplasmic 99.9 1.2E-24 4E-29 153.4 11.8 112 2-164 33-154 (166)
7 2qfj_A FBP-interacting repress 99.9 1.7E-24 5.7E-29 159.0 12.2 124 1-165 60-193 (216)
8 2g4b_A Splicing factor U2AF 65 99.9 1.6E-24 5.6E-29 153.8 10.3 108 5-164 45-161 (172)
9 2yh0_A Splicing factor U2AF 65 99.9 4.9E-24 1.7E-28 154.6 12.8 129 4-164 44-181 (198)
10 3nmr_A Cugbp ELAV-like family 99.9 2.4E-24 8.2E-29 153.2 10.0 114 1-165 35-162 (175)
11 1fje_B Nucleolin RBD12, protei 99.9 1.4E-24 4.8E-29 154.8 8.3 114 1-164 44-161 (175)
12 3smz_A Protein raver-1, ribonu 99.9 7.7E-24 2.6E-28 161.9 10.0 115 1-164 127-251 (284)
13 3tyt_A Heterogeneous nuclear r 99.9 8.8E-24 3E-28 155.1 9.5 139 10-164 41-190 (205)
14 3pgw_A U1-A; protein-RNA compl 99.9 1.4E-22 4.9E-27 154.7 13.6 64 98-165 204-270 (282)
15 2ghp_A U4/U6 snRNA-associated 99.9 9.9E-23 3.4E-27 156.3 9.6 117 1-164 150-278 (292)
16 2kn4_A Immunoglobulin G-bindin 99.9 7.9E-23 2.7E-27 143.9 7.9 118 8-165 10-138 (158)
17 2adc_A Polypyrimidine tract-bi 99.9 9.9E-22 3.4E-26 146.2 13.1 138 11-165 72-215 (229)
18 1qm9_A Polypyrimidine tract-bi 99.9 9.7E-22 3.3E-26 142.8 12.5 138 11-165 41-184 (198)
19 3sde_A Paraspeckle component 1 99.9 2.2E-21 7.5E-26 147.0 11.3 96 8-161 55-159 (261)
20 2i2y_A Fusion protein consists 99.9 2.2E-21 7.4E-26 135.6 8.8 122 7-165 9-136 (150)
21 3smz_A Protein raver-1, ribonu 99.8 1.1E-20 3.7E-25 144.5 11.1 99 8-164 54-162 (284)
22 2ghp_A U4/U6 snRNA-associated 99.8 1.2E-20 4E-25 144.7 9.0 103 2-165 74-185 (292)
23 2dgt_A RNA-binding protein 30; 99.7 1.9E-17 6.7E-22 106.1 6.7 63 98-164 7-69 (92)
24 2dnp_A RNA-binding protein 14; 99.7 4.2E-17 1.4E-21 104.1 6.9 63 98-164 6-68 (90)
25 4fxv_A ELAV-like protein 1; RN 99.7 3E-17 1E-21 106.9 6.2 61 100-164 18-86 (99)
26 1sjq_A Polypyrimidine tract-bi 99.7 3.7E-17 1.3E-21 107.1 6.6 60 98-161 13-74 (105)
27 2dnq_A RNA-binding protein 4B; 99.7 7.6E-17 2.6E-21 102.9 7.8 64 98-165 5-68 (90)
28 2dgu_A Heterogeneous nuclear r 99.7 5.1E-17 1.7E-21 106.3 7.0 64 98-165 8-71 (103)
29 4f25_A Polyadenylate-binding p 99.7 3.1E-17 1.1E-21 109.5 5.9 61 100-164 4-70 (115)
30 1x4d_A Matrin 3; structural ge 99.7 8.5E-17 2.9E-21 105.2 7.4 61 99-163 13-76 (102)
31 3r27_A HnRNP L, heterogeneous 99.7 1.2E-16 4.2E-21 103.7 7.7 62 98-163 18-81 (100)
32 2dnm_A SRP46 splicing factor; 99.7 2.7E-16 9.2E-21 102.8 9.0 64 98-165 10-81 (103)
33 3s8s_A Histone-lysine N-methyl 99.7 8.3E-17 2.8E-21 106.7 6.6 62 99-164 4-73 (110)
34 1x4c_A Splicing factor, argini 99.7 9.1E-17 3.1E-21 106.1 6.7 63 98-164 12-75 (108)
35 2cq1_A PTB-like protein L; RRM 99.7 3.2E-16 1.1E-20 102.3 8.7 61 98-162 12-74 (101)
36 1why_A Hypothetical protein ri 99.7 4.4E-16 1.5E-20 100.7 9.2 64 98-165 14-79 (97)
37 1wex_A Hypothetical protein (r 99.7 4.3E-16 1.5E-20 102.2 8.9 62 98-163 12-75 (104)
38 2ad9_A Polypyrimidine tract-bi 99.7 2E-16 6.8E-21 106.0 7.3 61 98-162 28-90 (119)
39 2e5h_A Zinc finger CCHC-type a 99.7 3.4E-16 1.2E-20 100.5 7.7 64 98-165 13-84 (94)
40 2lea_A Serine/arginine-rich sp 99.7 7.5E-17 2.6E-21 110.7 4.7 64 98-165 44-115 (135)
41 2cq3_A RNA-binding protein 9; 99.6 4.4E-16 1.5E-20 101.7 8.0 64 98-165 12-81 (103)
42 1x4e_A RNA binding motif, sing 99.6 3.3E-16 1.1E-20 98.8 7.1 63 99-165 3-73 (85)
43 1wf1_A RNA-binding protein RAL 99.6 2.5E-16 8.6E-21 104.2 6.7 63 99-165 25-88 (110)
44 1x4a_A Splicing factor, argini 99.6 9.3E-16 3.2E-20 101.2 9.4 64 98-165 19-87 (109)
45 2kvi_A Nuclear polyadenylated 99.6 2.1E-16 7.3E-21 102.1 6.1 63 98-164 7-70 (96)
46 2wbr_A GW182, gawky, LD47780P; 99.6 1.7E-16 5.7E-21 100.1 5.3 61 100-164 6-68 (89)
47 2cpd_A Apobec-1 stimulating pr 99.6 5.6E-16 1.9E-20 100.6 7.8 64 98-165 12-77 (99)
48 2dnh_A Bruno-like 5, RNA bindi 99.6 8.1E-16 2.8E-20 100.8 8.4 64 98-165 12-82 (105)
49 2ywk_A Putative RNA-binding pr 99.6 3.9E-16 1.3E-20 100.4 6.6 64 98-165 13-83 (95)
50 2xnq_A Nuclear polyadenylated 99.6 4.5E-16 1.5E-20 100.8 6.9 63 98-164 19-82 (97)
51 1x5u_A Splicing factor 3B subu 99.6 6.7E-16 2.3E-20 101.1 7.9 64 98-165 12-83 (105)
52 2cph_A RNA binding motif prote 99.6 7.8E-16 2.7E-20 101.1 8.2 64 98-165 12-85 (107)
53 3beg_B Splicing factor, argini 99.6 2.5E-16 8.6E-21 105.1 5.8 63 99-165 14-77 (115)
54 2dnz_A Probable RNA-binding pr 99.6 6.8E-16 2.3E-20 99.3 7.6 63 99-165 3-73 (95)
55 1x4f_A Matrin 3; structural ge 99.6 5.2E-16 1.8E-20 102.9 7.2 62 98-163 22-86 (112)
56 2d9p_A Polyadenylate-binding p 99.6 7.5E-16 2.6E-20 100.6 7.9 64 98-165 12-81 (103)
57 2do4_A Squamous cell carcinoma 99.6 1E-15 3.4E-20 99.5 8.2 64 98-165 14-84 (100)
58 1x5s_A Cold-inducible RNA-bind 99.6 6.7E-16 2.3E-20 100.6 7.3 64 98-165 9-80 (102)
59 2dgx_A KIAA0430 protein; RRM d 99.6 5.6E-16 1.9E-20 100.1 6.7 62 99-164 7-77 (96)
60 2jvo_A Nucleolar protein 3; nu 99.6 3.4E-16 1.2E-20 103.4 5.7 63 98-164 28-90 (108)
61 2dgs_A DAZ-associated protein 99.6 9.4E-16 3.2E-20 99.4 7.7 63 98-165 7-77 (99)
62 2dgo_A Cytotoxic granule-assoc 99.6 8.6E-16 2.9E-20 102.3 7.4 63 98-164 12-82 (115)
63 3mdf_A Peptidyl-prolyl CIS-tra 99.6 6E-16 2E-20 97.5 6.2 64 98-165 4-75 (85)
64 2cqi_A Nucleolysin TIAR; RNA r 99.6 9.7E-16 3.3E-20 100.1 7.4 64 98-165 12-81 (103)
65 3bs9_A Nucleolysin TIA-1 isofo 99.6 5.4E-16 1.9E-20 98.1 6.0 62 99-164 4-73 (87)
66 2cqc_A Arginine/serine-rich sp 99.6 9.5E-16 3.2E-20 98.5 7.1 64 98-165 12-83 (95)
67 2cq0_A Eukaryotic translation 99.6 6.2E-16 2.1E-20 101.0 6.2 64 98-165 12-83 (103)
68 2cpj_A Non-POU domain-containi 99.6 1.6E-15 5.5E-20 98.4 7.9 64 98-165 12-77 (99)
69 1whw_A Hypothetical protein ri 99.6 1E-15 3.5E-20 99.2 6.9 64 98-165 5-76 (99)
70 2lkz_A RNA-binding protein 5; 99.6 6.2E-16 2.1E-20 99.8 5.6 61 98-162 6-76 (95)
71 2dgp_A Bruno-like 4, RNA bindi 99.6 1.3E-15 4.4E-20 100.0 7.2 63 98-164 10-80 (106)
72 2dgv_A HnRNP M, heterogeneous 99.6 1.4E-15 4.9E-20 97.2 7.3 64 98-165 5-74 (92)
73 1whx_A Hypothetical protein ri 99.6 7.6E-16 2.6E-20 102.2 6.1 63 99-165 8-72 (111)
74 2jvr_A Nucleolar protein 3; RN 99.6 4.1E-16 1.4E-20 103.4 4.7 63 98-164 25-92 (111)
75 2cqb_A Peptidyl-prolyl CIS-tra 99.6 6.6E-16 2.2E-20 100.7 5.5 64 98-165 9-80 (102)
76 2do0_A HnRNP M, heterogeneous 99.6 1.7E-15 5.7E-20 100.7 7.5 64 98-165 12-82 (114)
77 2cq2_A Hypothetical protein LO 99.6 6.1E-16 2.1E-20 102.8 5.3 62 99-164 23-88 (114)
78 2e44_A Insulin-like growth fac 99.6 1.8E-15 6.2E-20 97.5 7.3 64 98-165 12-80 (96)
79 2cpz_A CUG triplet repeat RNA- 99.6 2.1E-15 7.2E-20 100.4 7.9 63 98-164 22-92 (115)
80 2err_A Ataxin-2-binding protei 99.6 1.2E-15 4E-20 100.9 6.3 64 98-165 26-95 (109)
81 2kxn_B Transformer-2 protein h 99.6 2.1E-15 7.2E-20 102.7 7.7 64 98-165 43-114 (129)
82 2ytc_A PRE-mRNA-splicing facto 99.6 1.6E-15 5.4E-20 95.6 6.5 63 98-164 9-74 (85)
83 2x1f_A MRNA 3'-END-processing 99.6 1.3E-15 4.5E-20 98.3 6.2 61 101-165 2-70 (96)
84 2cqd_A RNA-binding region cont 99.6 1.7E-15 5.8E-20 101.0 7.0 60 98-161 14-81 (116)
85 2jrs_A RNA-binding protein 39; 99.6 3.6E-15 1.2E-19 98.4 8.4 64 98-165 23-94 (108)
86 2khc_A Testis-specific RNP-typ 99.6 3.1E-15 1.1E-19 100.0 8.2 63 98-164 37-107 (118)
87 4a8x_A RNA-binding protein wit 99.6 1.6E-15 5.4E-20 96.1 6.4 62 100-165 3-73 (88)
88 1s79_A Lupus LA protein; RRM, 99.6 1.2E-15 4.1E-20 99.9 5.8 62 98-164 8-76 (103)
89 1x4h_A RNA-binding protein 28; 99.6 2.6E-15 9E-20 99.2 7.6 59 98-160 12-78 (111)
90 3md1_A Nuclear and cytoplasmic 99.6 1.4E-15 4.7E-20 95.4 5.9 60 102-165 2-69 (83)
91 3ulh_A THO complex subunit 4; 99.6 1.7E-15 5.7E-20 99.6 6.5 64 98-165 26-96 (107)
92 2krb_A Eukaryotic translation 99.6 7.9E-16 2.7E-20 96.3 4.5 61 101-165 1-73 (81)
93 2la6_A RNA-binding protein FUS 99.6 3E-15 1E-19 97.1 7.4 64 98-165 10-89 (99)
94 1p27_B RNA-binding protein 8A; 99.6 2.9E-15 9.8E-20 98.3 7.4 64 98-165 20-91 (106)
95 3ex7_B RNA-binding protein 8A; 99.6 3E-15 1E-19 101.2 7.7 64 98-165 19-90 (126)
96 1x5t_A Splicing factor 3B subu 99.6 5.8E-16 2E-20 99.8 3.9 62 99-164 3-73 (96)
97 2dhg_A TRNA selenocysteine ass 99.6 2.3E-15 7.9E-20 98.4 6.7 62 98-163 6-75 (104)
98 2cpf_A RNA binding motif prote 99.6 1.5E-15 5.1E-20 98.3 5.7 63 99-165 3-76 (98)
99 2hvz_A Splicing factor, argini 99.6 1.6E-15 5.3E-20 98.8 5.8 60 102-165 1-63 (101)
100 3p5t_L Cleavage and polyadenyl 99.6 8.2E-16 2.8E-20 98.1 4.3 60 102-165 2-71 (90)
101 1oo0_B CG8781-PA, drosophila Y 99.6 2.6E-15 8.9E-20 99.2 6.8 63 98-164 23-93 (110)
102 2dh8_A DAZ-associated protein 99.6 3.5E-15 1.2E-19 97.7 7.3 62 98-164 13-82 (105)
103 2div_A TRNA selenocysteine ass 99.6 1.3E-15 4.5E-20 98.7 5.1 64 98-165 6-78 (99)
104 4f25_A Polyadenylate-binding p 99.6 7.1E-16 2.4E-20 102.9 3.9 75 1-117 37-113 (115)
105 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.1E-15 7.3E-20 106.7 6.6 63 98-164 69-139 (165)
106 3ns6_A Eukaryotic translation 99.6 9.7E-16 3.3E-20 99.8 4.3 62 100-165 5-80 (100)
107 1x5o_A RNA binding motif, sing 99.6 8.9E-15 3E-19 97.2 9.0 64 98-165 22-92 (114)
108 1wi8_A EIF-4B, eukaryotic tran 99.6 3.5E-15 1.2E-19 97.6 6.8 61 98-164 12-81 (104)
109 2lxi_A RNA-binding protein 10; 99.6 4.7E-16 1.6E-20 99.6 2.5 56 101-160 1-65 (91)
110 3lqv_A PRE-mRNA branch site pr 99.6 5.1E-15 1.7E-19 98.5 7.6 64 98-165 5-73 (115)
111 2nlw_A Eukaryotic translation 99.6 5E-15 1.7E-19 97.1 7.3 63 99-165 13-87 (105)
112 1x4g_A Nucleolysin TIAR; struc 99.6 3E-15 1E-19 98.8 6.2 63 98-164 22-86 (109)
113 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.8E-15 2.3E-19 101.0 8.1 63 98-164 60-130 (140)
114 2la4_A Nuclear and cytoplasmic 99.6 3E-15 1E-19 97.4 5.9 64 98-165 24-89 (101)
115 1nu4_A U1A RNA binding domain; 99.6 4.4E-15 1.5E-19 95.8 6.5 63 98-164 5-76 (97)
116 2e5j_A Methenyltetrahydrofolat 99.6 6.7E-15 2.3E-19 95.1 7.1 63 98-165 16-82 (97)
117 2cpe_A RNA-binding protein EWS 99.6 4.5E-15 1.5E-19 98.5 6.2 64 98-165 12-91 (113)
118 2cpi_A CCR4-NOT transcription 99.6 2.7E-15 9.3E-20 99.4 5.1 63 98-164 12-88 (111)
119 1wg5_A Heterogeneous nuclear r 99.6 8.1E-15 2.8E-19 96.0 7.3 62 98-164 12-81 (104)
120 2m2b_A RNA-binding protein 10; 99.6 4.7E-15 1.6E-19 101.1 6.4 60 98-162 20-89 (131)
121 2fy1_A RNA-binding motif prote 99.6 3.7E-15 1.3E-19 99.6 5.8 63 99-165 5-74 (116)
122 2cq4_A RNA binding motif prote 99.6 1.1E-14 3.6E-19 96.8 7.6 62 99-165 23-92 (114)
123 3ucg_A Polyadenylate-binding p 99.6 4.3E-15 1.5E-19 94.3 5.3 61 100-165 5-73 (89)
124 2kt5_A RNA and export factor-b 99.6 1.7E-14 5.9E-19 97.2 8.4 64 98-165 32-102 (124)
125 2a3j_A U1 small nuclear ribonu 99.6 1E-14 3.5E-19 99.0 7.3 63 98-164 26-97 (127)
126 2dng_A Eukaryotic translation 99.5 7.1E-15 2.4E-19 96.0 6.2 61 98-164 12-80 (103)
127 1p1t_A Cleavage stimulation fa 99.5 1.9E-15 6.5E-20 98.7 3.4 63 99-165 6-76 (104)
128 1u6f_A Tcubp1, RNA-binding pro 99.5 1.1E-14 3.7E-19 100.0 7.4 64 98-165 39-110 (139)
129 2cqg_A TDP-43, TAR DNA-binding 99.5 1.1E-14 3.6E-19 95.1 6.9 58 98-159 12-77 (103)
130 1wez_A HnRNP H', FTP-3, hetero 99.5 6.8E-15 2.3E-19 96.1 6.0 61 98-164 12-79 (102)
131 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.1E-15 1.4E-19 91.9 4.4 58 102-164 1-66 (77)
132 3n9u_C Cleavage and polyadenyl 99.5 5E-15 1.7E-19 103.9 5.2 61 100-164 54-124 (156)
133 3s7r_A Heterogeneous nuclear r 99.5 1.1E-14 3.9E-19 92.0 6.3 57 98-158 8-72 (87)
134 2cqh_A IGF-II mRNA-binding pro 99.5 4.1E-15 1.4E-19 95.3 3.9 63 98-164 5-70 (93)
135 2cqp_A RNA-binding protein 12; 99.5 3.2E-15 1.1E-19 96.7 3.4 63 98-164 12-82 (98)
136 2ek1_A RNA-binding protein 12; 99.5 2.1E-15 7E-20 97.0 2.5 62 99-164 13-82 (95)
137 2db1_A Heterogeneous nuclear r 99.5 6E-15 2E-19 98.8 4.6 62 98-164 14-85 (118)
138 2e5i_A Heterogeneous nuclear r 99.5 1.6E-14 5.5E-19 97.4 6.6 59 102-164 26-87 (124)
139 4f02_A Polyadenylate-binding p 99.5 1E-14 3.5E-19 107.1 6.2 62 99-164 13-82 (213)
140 2hgn_A Heterogeneous nuclear r 99.5 2.7E-15 9.3E-20 103.3 2.8 61 98-164 43-110 (139)
141 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.3E-14 4.3E-19 101.7 6.2 64 98-165 36-107 (156)
142 3d2w_A TAR DNA-binding protein 99.5 1.6E-14 5.4E-19 92.0 6.1 50 98-147 8-60 (89)
143 2j76_E EIF-4B, EIF4B, eukaryot 99.5 6.9E-15 2.4E-19 95.6 4.4 62 98-165 16-86 (100)
144 2mss_A Protein (musashi1); RNA 99.5 5.2E-15 1.8E-19 91.0 3.2 58 103-165 1-66 (75)
145 2rs2_A Musashi-1, RNA-binding 99.5 1.5E-14 5E-19 95.6 5.6 59 98-160 22-88 (109)
146 2dgw_A Probable RNA-binding pr 99.5 1.2E-14 4.1E-19 92.7 5.0 61 98-164 7-74 (91)
147 1sjr_A Polypyrimidine tract-bi 99.5 1.6E-14 5.4E-19 101.6 5.9 62 99-164 44-109 (164)
148 2e5g_A U6 snRNA-specific termi 99.5 2E-14 6.9E-19 92.3 5.9 61 99-164 6-69 (94)
149 3zzy_A Polypyrimidine tract-bi 99.5 1.6E-14 5.5E-19 98.0 5.6 61 100-164 27-91 (130)
150 3tyt_A Heterogeneous nuclear r 99.5 2.4E-14 8.2E-19 104.7 6.8 61 100-164 3-67 (205)
151 2hgl_A HNRPF protein, heteroge 99.5 8.9E-15 3E-19 100.4 3.9 63 98-165 41-113 (136)
152 3q2s_C Cleavage and polyadenyl 99.5 1.8E-14 6.2E-19 107.1 5.9 62 100-165 67-138 (229)
153 2dis_A Unnamed protein product 99.5 1.7E-14 5.9E-19 95.0 5.1 58 99-160 6-73 (109)
154 2dnn_A RNA-binding protein 12; 99.5 1.4E-14 4.8E-19 95.7 4.5 60 99-164 14-80 (109)
155 2fc9_A NCL protein; structure 99.5 2.7E-14 9.3E-19 92.8 5.6 61 98-165 12-79 (101)
156 2diu_A KIAA0430 protein; struc 99.5 6.5E-14 2.2E-18 89.1 7.0 59 100-164 7-71 (96)
157 1x5p_A Negative elongation fac 99.5 6.6E-14 2.2E-18 90.4 7.2 61 98-164 12-74 (97)
158 2dnl_A Cytoplasmic polyadenyla 99.5 2.7E-14 9.2E-19 95.0 5.3 58 99-161 6-74 (114)
159 2jwn_A Embryonic polyadenylate 99.5 1.3E-14 4.5E-19 97.8 3.8 60 100-164 35-102 (124)
160 2lmi_A GRSF-1, G-rich sequence 99.5 1.8E-14 6.2E-19 94.8 4.1 63 98-165 8-80 (107)
161 1wel_A RNA-binding protein 12; 99.5 2.2E-14 7.4E-19 96.8 4.5 63 98-165 22-92 (124)
162 2hzc_A Splicing factor U2AF 65 99.5 2.8E-14 9.4E-19 90.1 4.7 61 99-164 4-77 (87)
163 2xs2_A Deleted in azoospermia- 99.5 2.2E-14 7.7E-19 93.4 4.0 63 98-164 6-78 (102)
164 2cpy_A RNA-binding protein 12; 99.5 2.5E-14 8.5E-19 95.2 4.2 61 98-163 12-80 (114)
165 1fj7_A Nucleolin RBD1, protein 99.5 2.9E-14 9.9E-19 92.7 4.2 61 99-165 15-83 (101)
166 2f3j_A RNA and export factor b 99.5 7.6E-14 2.6E-18 99.9 6.7 64 98-165 85-155 (177)
167 1wg1_A KIAA1579 protein, homol 99.5 3.1E-14 1.1E-18 90.3 4.2 60 100-164 4-65 (88)
168 2cpx_A Hypothetical protein FL 99.5 1.2E-13 4E-18 91.8 7.1 64 98-165 22-93 (115)
169 3nmr_A Cugbp ELAV-like family 99.5 9.4E-14 3.2E-18 98.1 6.9 62 100-165 2-73 (175)
170 1wf0_A TDP-43, TAR DNA-binding 99.5 4E-14 1.4E-18 89.7 4.5 52 100-155 4-58 (88)
171 1iqt_A AUF1, heterogeneous nuc 99.5 2.3E-14 7.8E-19 88.1 3.2 55 103-162 1-63 (75)
172 2hgm_A HNRPF protein, heteroge 99.5 1.3E-13 4.5E-18 93.3 6.9 56 98-158 39-103 (126)
173 1x4b_A Heterogeneous nuclear r 99.5 2.8E-14 9.4E-19 95.1 3.5 60 99-163 25-92 (116)
174 2lxi_A RNA-binding protein 10; 99.4 1.5E-13 5E-18 87.9 6.2 49 1-49 34-85 (91)
175 2lcw_A RNA-binding protein FUS 99.2 7.3E-15 2.5E-19 98.0 0.0 64 98-165 4-83 (116)
176 1fxl_A Paraneoplastic encephal 99.4 1.4E-13 4.7E-18 96.4 6.3 60 101-164 2-69 (167)
177 2fc8_A NCL protein; structure 99.4 1.9E-13 6.7E-18 88.8 6.4 63 98-164 12-79 (102)
178 1b7f_A Protein (SXL-lethal pro 99.4 1.3E-13 4.5E-18 96.8 5.7 61 100-164 2-70 (168)
179 2adc_A Polypyrimidine tract-bi 99.4 2.7E-13 9.2E-18 100.5 7.4 64 98-165 31-98 (229)
180 3u1l_A PRE-mRNA-splicing facto 99.4 1.4E-13 4.8E-18 102.6 5.5 63 98-164 131-204 (240)
181 1fjc_A Nucleolin RBD2, protein 99.4 8.4E-14 2.9E-18 89.6 3.4 63 98-164 13-78 (96)
182 2j8a_A Histone-lysine N-methyl 99.4 1.7E-13 5.8E-18 92.1 4.9 63 102-164 3-83 (136)
183 2dha_A FLJ20171 protein; RRM d 99.4 8.1E-14 2.8E-18 94.0 3.1 60 99-163 21-91 (123)
184 3egn_A RNA-binding protein 40; 99.4 3.5E-14 1.2E-18 98.0 1.3 64 98-165 42-118 (143)
185 2bz2_A Negative elongation fac 99.4 3.2E-13 1.1E-17 90.8 5.6 62 98-165 36-99 (121)
186 3md3_A Nuclear and cytoplasmic 99.4 2.2E-13 7.5E-18 95.3 5.0 59 102-164 1-66 (166)
187 3pgw_S U1-70K; protein-RNA com 99.4 2.4E-13 8.2E-18 109.8 5.7 63 99-165 100-170 (437)
188 2cjk_A Nuclear polyadenylated 99.4 3.6E-13 1.2E-17 94.5 5.6 55 100-158 2-64 (167)
189 2qfj_A FBP-interacting repress 99.4 6.6E-13 2.3E-17 96.9 7.0 62 100-165 27-96 (216)
190 2lkz_A RNA-binding protein 5; 99.4 5.1E-13 1.7E-17 86.1 5.6 46 1-46 43-94 (95)
191 2ki2_A SS-DNA binding protein 99.4 1.3E-13 4.3E-18 87.7 2.4 59 102-165 2-68 (90)
192 1l3k_A Heterogeneous nuclear r 99.4 3.8E-13 1.3E-17 96.8 5.2 57 98-158 10-74 (196)
193 1qm9_A Polypyrimidine tract-bi 99.4 7E-13 2.4E-17 95.8 6.5 61 101-165 3-67 (198)
194 4fxv_A ELAV-like protein 1; RN 99.4 3.9E-13 1.3E-17 87.2 4.5 46 1-46 51-98 (99)
195 3tht_A Alkylated DNA repair pr 99.4 3.7E-13 1.3E-17 105.2 5.2 63 98-164 15-81 (345)
196 3sde_A Paraspeckle component 1 99.3 1.4E-12 4.8E-17 98.5 6.8 63 98-164 19-83 (261)
197 3pgw_A U1-A; protein-RNA compl 99.3 1.6E-12 5.6E-17 98.8 6.8 63 98-164 6-77 (282)
198 2cqg_A TDP-43, TAR DNA-binding 99.3 2.1E-12 7.1E-17 84.0 6.0 51 1-51 47-97 (103)
199 3p5t_L Cleavage and polyadenyl 99.3 5.8E-13 2E-17 84.7 2.5 48 1-48 35-84 (90)
200 2voo_A Lupus LA protein; RNA-b 99.3 2.5E-12 8.7E-17 93.1 5.5 57 100-160 108-171 (193)
201 3s8s_A Histone-lysine N-methyl 99.3 2.9E-12 9.8E-17 84.7 4.8 47 1-47 38-86 (110)
202 3ns6_A Eukaryotic translation 99.3 1.4E-12 4.7E-17 84.7 2.8 47 1-47 44-93 (100)
203 2rs2_A Musashi-1, RNA-binding 99.3 9.2E-12 3.2E-16 82.0 6.5 49 1-49 57-106 (109)
204 2dgs_A DAZ-associated protein 99.3 1.3E-11 4.4E-16 79.7 6.8 49 1-49 42-91 (99)
205 1owx_A Lupus LA protein, SS-B, 99.3 8.1E-12 2.8E-16 83.5 5.9 61 98-162 15-79 (121)
206 3md1_A Nuclear and cytoplasmic 99.3 7E-12 2.4E-16 78.2 5.2 48 1-48 33-82 (83)
207 1whw_A Hypothetical protein ri 99.2 3E-11 1E-15 77.9 7.8 49 1-49 40-90 (99)
208 1x5t_A Splicing factor 3B subu 99.2 1.9E-11 6.7E-16 78.3 6.8 49 1-49 38-88 (96)
209 1x4h_A RNA-binding protein 28; 99.2 2.7E-11 9.1E-16 79.7 7.5 51 1-51 47-105 (111)
210 2mss_A Protein (musashi1); RNA 99.2 9E-12 3.1E-16 76.3 4.7 44 1-44 31-75 (75)
211 2dng_A Eukaryotic translation 99.2 1.3E-11 4.6E-16 80.2 5.7 49 1-49 46-95 (103)
212 2dit_A HIV TAT specific factor 99.2 1.4E-11 4.8E-16 81.5 5.8 63 98-164 12-89 (112)
213 2fc8_A NCL protein; structure 99.2 1.3E-11 4.6E-16 80.0 5.4 49 1-49 44-94 (102)
214 2x1f_A MRNA 3'-END-processing 99.2 2.6E-11 8.9E-16 77.8 6.5 48 1-48 34-83 (96)
215 2pe8_A Splicing factor 45; RRM 99.2 2.4E-11 8.3E-16 79.5 6.4 62 99-164 6-81 (105)
216 2cqb_A Peptidyl-prolyl CIS-tra 99.2 3.2E-11 1.1E-15 78.2 6.8 49 1-49 44-94 (102)
217 2g4b_A Splicing factor U2AF 65 99.2 9.2E-12 3.1E-16 87.7 4.5 60 100-164 3-75 (172)
218 2cpe_A RNA-binding protein EWS 99.2 3.9E-11 1.3E-15 79.2 7.2 49 1-49 55-105 (113)
219 3bs9_A Nucleolysin TIA-1 isofo 99.2 1.2E-11 4E-16 77.8 4.4 47 1-47 38-86 (87)
220 2hvz_A Splicing factor, argini 99.2 1.7E-11 5.9E-16 79.3 5.2 39 10-48 36-76 (101)
221 1x4b_A Heterogeneous nuclear r 99.2 2.4E-11 8.2E-16 80.7 6.0 50 1-50 59-109 (116)
222 1x5u_A Splicing factor 3B subu 99.2 3.8E-11 1.3E-15 78.2 6.9 49 1-49 47-97 (105)
223 2dhg_A TRNA selenocysteine ass 99.2 1.5E-11 5.1E-16 80.0 4.8 50 1-51 42-94 (104)
224 2dnz_A Probable RNA-binding pr 99.2 3.4E-11 1.2E-15 77.0 6.2 49 1-49 37-87 (95)
225 1iqt_A AUF1, heterogeneous nuc 99.2 1.3E-11 4.4E-16 75.5 3.9 44 1-44 31-75 (75)
226 2dgo_A Cytotoxic granule-assoc 99.2 5.8E-11 2E-15 78.6 7.3 50 1-50 47-98 (115)
227 2cqd_A RNA-binding region cont 99.2 8.7E-11 3E-15 77.9 8.1 49 1-49 49-98 (116)
228 1fj7_A Nucleolin RBD1, protein 99.2 1.3E-11 4.6E-16 79.9 3.9 48 1-48 48-96 (101)
229 3n9u_C Cleavage and polyadenyl 99.2 1E-11 3.5E-16 87.0 3.6 47 1-47 89-137 (156)
230 2cq0_A Eukaryotic translation 99.2 3.3E-11 1.1E-15 78.3 5.8 49 1-49 47-97 (103)
231 2j76_E EIF-4B, EIF4B, eukaryot 99.2 2.6E-11 8.9E-16 78.5 5.2 48 1-48 50-99 (100)
232 3s7r_A Heterogeneous nuclear r 99.2 1.8E-11 6.1E-16 77.1 4.3 44 1-44 43-87 (87)
233 1wi8_A EIF-4B, eukaryotic tran 99.2 6.1E-11 2.1E-15 77.2 7.0 50 1-50 46-97 (104)
234 2dis_A Unnamed protein product 99.2 1E-10 3.4E-15 76.7 8.0 47 3-49 44-94 (109)
235 2yh0_A Splicing factor U2AF 65 99.2 2E-11 6.9E-16 87.8 5.0 60 100-164 3-75 (198)
236 1wez_A HnRNP H', FTP-3, hetero 99.2 1.3E-11 4.4E-16 80.4 3.4 47 1-48 46-93 (102)
237 2m2b_A RNA-binding protein 10; 99.2 2.6E-11 9E-16 82.3 5.1 48 1-49 57-110 (131)
238 2dnm_A SRP46 splicing factor; 99.2 4.2E-11 1.4E-15 77.8 5.7 47 1-47 45-93 (103)
239 2cpz_A CUG triplet repeat RNA- 99.2 3.5E-11 1.2E-15 79.8 5.4 49 1-49 57-107 (115)
240 1x5s_A Cold-inducible RNA-bind 99.2 4.3E-11 1.5E-15 77.5 5.6 49 1-49 44-94 (102)
241 2dh8_A DAZ-associated protein 99.2 1.9E-11 6.6E-16 79.7 4.0 49 1-49 48-97 (105)
242 2dnn_A RNA-binding protein 12; 99.2 3.1E-11 1.1E-15 79.6 4.8 46 1-47 47-93 (109)
243 1oo0_B CG8781-PA, drosophila Y 99.2 5E-11 1.7E-15 78.3 5.9 48 1-48 58-107 (110)
244 1p27_B RNA-binding protein 8A; 99.1 2.4E-11 8.3E-16 79.3 4.0 47 1-47 55-103 (106)
245 2la6_A RNA-binding protein FUS 99.1 2.5E-11 8.5E-16 78.4 3.9 45 1-45 53-99 (99)
246 2cpy_A RNA-binding protein 12; 99.1 2.1E-11 7.3E-16 80.8 3.6 46 1-47 48-94 (114)
247 1wg5_A Heterogeneous nuclear r 99.1 8.6E-11 2.9E-15 76.6 6.4 47 1-48 48-95 (104)
248 2jrs_A RNA-binding protein 39; 99.1 2.2E-11 7.6E-16 80.0 3.6 48 1-48 58-107 (108)
249 3mdf_A Peptidyl-prolyl CIS-tra 99.1 4.3E-11 1.5E-15 74.9 4.8 44 1-44 39-84 (85)
250 2dgw_A Probable RNA-binding pr 99.1 4.3E-11 1.5E-15 76.0 4.7 46 1-47 41-87 (91)
251 1u6f_A Tcubp1, RNA-binding pro 99.1 6.9E-11 2.4E-15 80.9 5.8 49 1-49 74-124 (139)
252 2do4_A Squamous cell carcinoma 99.1 5.7E-11 2E-15 76.7 5.1 47 1-48 49-97 (100)
253 2e5h_A Zinc finger CCHC-type a 99.1 7.1E-11 2.4E-15 75.3 5.5 45 1-45 48-94 (94)
254 2fy1_A RNA-binding motif prote 99.1 1.1E-10 3.8E-15 77.6 6.6 47 1-48 39-87 (116)
255 2dgp_A Bruno-like 4, RNA bindi 99.1 1.5E-10 5.1E-15 75.5 7.0 49 1-49 45-98 (106)
256 2cph_A RNA binding motif prote 99.1 1.7E-10 5.7E-15 75.3 7.2 49 1-49 47-99 (107)
257 2cqp_A RNA-binding protein 12; 99.1 5.4E-11 1.8E-15 76.5 4.7 46 2-47 48-95 (98)
258 2kn4_A Immunoglobulin G-bindin 99.1 1.3E-10 4.3E-15 81.2 6.9 47 1-47 102-150 (158)
259 2kxn_B Transformer-2 protein h 99.1 5.6E-11 1.9E-15 80.6 4.8 47 1-47 78-126 (129)
260 2hgm_A HNRPF protein, heteroge 99.1 1.5E-11 5.3E-16 83.0 1.9 46 1-47 75-121 (126)
261 1fje_B Nucleolin RBD12, protei 99.1 2.3E-11 7.8E-16 86.0 2.9 63 98-165 10-79 (175)
262 3ucg_A Polyadenylate-binding p 99.1 5.9E-11 2E-15 74.9 4.5 47 1-47 38-85 (89)
263 2cqc_A Arginine/serine-rich sp 99.1 6.2E-11 2.1E-15 75.7 4.6 46 1-46 47-94 (95)
264 1uaw_A Mouse-musashi-1; RNP-ty 99.1 3.3E-11 1.1E-15 74.0 3.0 44 1-44 32-76 (77)
265 1s79_A Lupus LA protein; RRM, 99.1 4.9E-11 1.7E-15 77.8 3.7 45 1-46 43-88 (103)
266 2fc9_A NCL protein; structure 99.1 2.5E-10 8.5E-15 73.8 7.0 47 1-48 44-92 (101)
267 2ki2_A SS-DNA binding protein 99.1 4.5E-11 1.5E-15 75.7 3.3 47 1-48 33-81 (90)
268 3lqv_A PRE-mRNA branch site pr 99.1 2.3E-11 8E-16 80.6 2.0 65 7-127 43-109 (115)
269 2ek1_A RNA-binding protein 12; 99.1 7.5E-11 2.6E-15 75.3 4.1 45 1-45 47-93 (95)
270 3ex7_B RNA-binding protein 8A; 99.1 1.3E-10 4.6E-15 78.1 5.5 49 1-49 54-104 (126)
271 1p1t_A Cleavage stimulation fa 99.1 5.4E-11 1.8E-15 77.3 3.2 48 1-48 40-89 (104)
272 2hgl_A HNRPF protein, heteroge 99.1 3.4E-11 1.2E-15 82.4 1.8 46 1-47 79-125 (136)
273 2jwn_A Embryonic polyadenylate 99.1 2E-10 6.7E-15 77.0 5.5 47 1-47 68-115 (124)
274 2cpf_A RNA binding motif prote 99.1 1.2E-10 4.2E-15 74.8 4.1 48 2-49 38-90 (98)
275 2lmi_A GRSF-1, G-rich sequence 99.1 9.4E-11 3.2E-15 76.8 3.6 46 1-47 46-92 (107)
276 2div_A TRNA selenocysteine ass 99.1 9.7E-11 3.3E-15 75.4 3.5 47 1-47 42-94 (99)
277 3v4m_A Splicing factor U2AF 65 99.1 2.3E-10 7.7E-15 74.9 5.3 62 99-164 3-84 (105)
278 2pe8_A Splicing factor 45; RRM 99.1 1.4E-10 4.7E-15 75.9 4.3 46 1-46 45-93 (105)
279 2khc_A Testis-specific RNP-typ 99.0 1.2E-10 4.2E-15 77.4 4.0 44 1-44 72-117 (118)
280 2hgn_A Heterogeneous nuclear r 99.0 6.8E-11 2.3E-15 81.2 2.7 47 1-48 77-124 (139)
281 2cpi_A CCR4-NOT transcription 99.0 2.5E-10 8.6E-15 75.2 5.3 47 2-48 51-102 (111)
282 2d9p_A Polyadenylate-binding p 99.0 2.9E-10 9.8E-15 73.8 5.3 47 2-50 48-96 (103)
283 1jmt_A Splicing factor U2AF 35 99.0 2E-10 7E-15 74.9 4.5 43 1-44 59-103 (104)
284 2xs2_A Deleted in azoospermia- 99.0 4.5E-11 1.6E-15 77.5 1.3 48 1-49 41-88 (102)
285 2lea_A Serine/arginine-rich sp 99.0 2.4E-10 8.3E-15 78.0 5.0 47 1-47 79-127 (135)
286 2cq4_A RNA binding motif prote 99.0 1.7E-10 5.7E-15 76.3 4.1 47 1-47 57-104 (114)
287 4a8x_A RNA-binding protein wit 99.0 2E-10 6.7E-15 72.2 4.3 47 1-47 36-85 (88)
288 2dnh_A Bruno-like 5, RNA bindi 99.0 2.9E-10 1E-14 73.9 5.2 48 1-49 47-99 (105)
289 2db1_A Heterogeneous nuclear r 99.0 1.6E-10 5.6E-15 77.0 3.9 46 1-47 52-98 (118)
290 3ue2_A Poly(U)-binding-splicin 99.0 3.8E-10 1.3E-14 75.3 5.6 61 100-164 19-96 (118)
291 1wel_A RNA-binding protein 12; 99.0 5.9E-11 2E-15 79.8 1.6 46 2-47 58-104 (124)
292 2kt5_A RNA and export factor-b 99.0 4.6E-10 1.6E-14 75.3 6.0 47 1-48 67-115 (124)
293 2d9o_A DNAJ (HSP40) homolog, s 99.0 8.8E-10 3E-14 71.4 7.0 59 101-163 10-78 (100)
294 3q2s_C Cleavage and polyadenyl 99.0 1.1E-10 3.7E-15 86.7 2.9 46 1-46 102-149 (229)
295 2dha_A FLJ20171 protein; RRM d 99.0 4.5E-11 1.5E-15 80.4 0.7 46 1-47 59-105 (123)
296 1h2v_Z 20 kDa nuclear CAP bind 99.0 3.5E-10 1.2E-14 78.8 5.3 49 1-49 71-121 (156)
297 2lcw_A RNA-binding protein FUS 98.6 3.5E-11 1.2E-15 79.9 0.0 49 1-49 47-97 (116)
298 2do0_A HnRNP M, heterogeneous 99.0 9.2E-10 3.1E-14 72.6 6.9 46 1-47 47-94 (114)
299 2dgx_A KIAA0430 protein; RRM d 99.0 7.4E-10 2.5E-14 71.0 6.0 44 1-47 45-90 (96)
300 1x4e_A RNA binding motif, sing 99.0 9.9E-11 3.4E-15 73.3 1.6 44 1-44 37-82 (85)
301 2j8a_A Histone-lysine N-methyl 99.0 1.4E-10 4.7E-15 78.0 2.4 44 1-44 38-93 (136)
302 3ulh_A THO complex subunit 4; 99.0 3.6E-10 1.2E-14 73.8 4.3 44 1-45 61-106 (107)
303 2dnr_A Synaptojanin-1; RRM dom 99.0 2.8E-10 9.5E-15 71.7 3.5 62 99-165 5-74 (91)
304 2nlw_A Eukaryotic translation 99.0 5.6E-10 1.9E-14 72.8 5.0 44 5-48 55-101 (105)
305 2ywk_A Putative RNA-binding pr 99.0 4E-10 1.4E-14 71.9 4.1 44 1-45 48-93 (95)
306 2cpx_A Hypothetical protein FL 99.0 6.6E-10 2.2E-14 73.4 4.9 46 4-49 60-107 (115)
307 2a3j_A U1 small nuclear ribonu 99.0 7.3E-10 2.5E-14 74.9 5.0 43 6-48 67-111 (127)
308 2dnl_A Cytoplasmic polyadenyla 98.9 9.3E-10 3.2E-14 72.8 5.1 45 1-45 39-86 (114)
309 2cqi_A Nucleolysin TIAR; RNA r 98.9 2E-09 6.8E-14 69.7 6.6 46 2-49 48-95 (103)
310 3v4m_A Splicing factor U2AF 65 98.9 1.2E-09 4.2E-14 71.3 5.6 45 1-45 47-95 (105)
311 1rk8_A CG8781-PA, CG8781-PA pr 98.9 5.5E-10 1.9E-14 78.6 4.1 49 1-49 104-154 (165)
312 2dgv_A HnRNP M, heterogeneous 98.9 7.1E-10 2.4E-14 70.3 4.0 43 6-48 43-87 (92)
313 2wbr_A GW182, gawky, LD47780P; 98.9 1.3E-09 4.5E-14 68.5 4.9 37 9-45 41-79 (89)
314 1x5o_A RNA binding motif, sing 98.9 9E-10 3.1E-14 72.7 4.3 46 1-47 57-112 (114)
315 1jmt_A Splicing factor U2AF 35 98.9 1E-10 3.4E-15 76.4 -0.4 55 106-164 20-93 (104)
316 1fjc_A Nucleolin RBD2, protein 98.9 1.5E-09 5.1E-14 69.4 4.9 43 6-48 48-92 (96)
317 1ufw_A Synaptojanin 2; RNP dom 98.9 1.2E-09 4.2E-14 69.1 4.0 65 98-167 12-85 (95)
318 2d9o_A DNAJ (HSP40) homolog, s 98.9 2.6E-09 9E-14 69.1 5.7 41 8-48 51-91 (100)
319 2cq3_A RNA-binding protein 9; 98.9 4E-09 1.4E-13 68.3 6.5 46 2-49 48-95 (103)
320 2krb_A Eukaryotic translation 98.9 9.9E-10 3.4E-14 68.1 3.3 37 5-41 41-80 (81)
321 1x4a_A Splicing factor, argini 98.8 7.9E-09 2.7E-13 67.6 6.6 43 6-48 56-100 (109)
322 2err_A Ataxin-2-binding protei 98.8 3.2E-09 1.1E-13 69.6 4.4 44 2-47 62-107 (109)
323 2jvr_A Nucleolar protein 3; RN 98.8 5.3E-09 1.8E-13 69.0 5.3 39 8-46 64-104 (111)
324 3pgw_S U1-70K; protein-RNA com 98.8 8.8E-09 3E-13 83.2 7.5 49 1-49 134-184 (437)
325 3egn_A RNA-binding protein 40; 98.8 2.2E-09 7.4E-14 73.7 3.3 43 5-47 86-130 (143)
326 2e5j_A Methenyltetrahydrofolat 98.8 3.8E-09 1.3E-13 67.7 4.1 41 7-47 52-94 (97)
327 2f3j_A RNA and export factor b 98.8 4.4E-09 1.5E-13 74.9 4.8 46 1-47 120-167 (177)
328 3ue2_A Poly(U)-binding-splicin 98.8 1.8E-09 6.1E-14 72.0 2.4 39 7-45 67-107 (118)
329 1nu4_A U1A RNA binding domain; 98.8 2.7E-09 9.2E-14 68.2 3.2 42 7-48 47-90 (97)
330 3s6e_A RNA-binding protein 39; 98.8 1.3E-08 4.5E-13 67.4 6.4 62 99-164 5-80 (114)
331 2dit_A HIV TAT specific factor 98.8 8.1E-09 2.8E-13 68.0 5.3 42 9-50 62-105 (112)
332 3d2w_A TAR DNA-binding protein 98.8 8.2E-09 2.8E-13 65.3 4.8 40 10-49 47-86 (89)
333 1x5p_A Negative elongation fac 98.8 2.3E-08 7.9E-13 64.0 6.6 41 8-48 46-88 (97)
334 1sjq_A Polypyrimidine tract-bi 98.7 7.6E-09 2.6E-13 67.4 4.2 40 10-49 51-94 (105)
335 2cqh_A IGF-II mRNA-binding pro 98.7 2.4E-08 8.4E-13 63.3 5.4 41 9-49 42-85 (93)
336 2cq1_A PTB-like protein L; RRM 98.7 3.2E-08 1.1E-12 64.1 6.0 40 10-49 50-93 (101)
337 1x4f_A Matrin 3; structural ge 98.7 1.9E-08 6.3E-13 66.4 4.9 41 9-49 60-104 (112)
338 3r27_A HnRNP L, heterogeneous 98.7 2.8E-08 9.5E-13 64.2 5.5 39 9-47 55-97 (100)
339 2la4_A Nuclear and cytoplasmic 98.7 1.2E-08 4.3E-13 65.6 3.9 39 9-47 61-101 (101)
340 2e5g_A U6 snRNA-specific termi 98.7 2.5E-08 8.4E-13 63.5 5.1 45 2-49 39-84 (94)
341 1wg1_A KIAA1579 protein, homol 98.7 1.8E-08 6.1E-13 63.4 4.3 38 9-46 38-77 (88)
342 1x4g_A Nucleolysin TIAR; struc 98.7 3.8E-08 1.3E-12 64.3 5.8 39 11-49 61-101 (109)
343 2cpd_A Apobec-1 stimulating pr 98.7 5.7E-08 2E-12 62.3 6.5 41 9-49 49-91 (99)
344 1x4d_A Matrin 3; structural ge 98.7 4.7E-08 1.6E-12 63.4 6.1 40 10-49 51-94 (102)
345 2dgu_A Heterogeneous nuclear r 98.7 8E-08 2.7E-12 62.1 7.2 42 10-51 44-87 (103)
346 1wex_A Hypothetical protein (r 98.7 6.9E-08 2.4E-12 62.8 6.6 40 10-49 50-93 (104)
347 1wf0_A TDP-43, TAR DNA-binding 98.6 2.8E-08 9.6E-13 62.4 4.4 40 10-49 41-80 (88)
348 2cpj_A Non-POU domain-containi 98.6 3.3E-08 1.1E-12 63.4 4.6 40 9-48 49-90 (99)
349 2bz2_A Negative elongation fac 98.6 3.7E-08 1.3E-12 65.8 4.8 40 9-48 71-112 (121)
350 2dnq_A RNA-binding protein 4B; 98.6 8.1E-08 2.8E-12 60.5 5.9 39 11-49 42-82 (90)
351 2ad9_A Polypyrimidine tract-bi 98.6 5.1E-08 1.7E-12 65.0 5.0 40 10-49 66-109 (119)
352 2xnq_A Nuclear polyadenylated 98.6 7.7E-08 2.6E-12 61.6 5.3 38 10-47 56-95 (97)
353 2e44_A Insulin-like growth fac 98.6 5.8E-08 2E-12 61.8 4.5 45 1-49 48-94 (96)
354 2diu_A KIAA0430 protein; struc 98.6 1.2E-07 4.2E-12 60.2 5.7 38 12-49 47-86 (96)
355 1wf1_A RNA-binding protein RAL 98.6 8.1E-08 2.8E-12 62.8 4.8 38 10-47 61-100 (110)
356 3s6e_A RNA-binding protein 39; 98.5 6E-08 2.1E-12 64.1 4.2 36 10-45 54-91 (114)
357 2dnp_A RNA-binding protein 14; 98.5 1.6E-07 5.5E-12 59.1 5.9 38 11-48 43-82 (90)
358 2ytc_A PRE-mRNA-splicing facto 98.5 7.9E-08 2.7E-12 59.7 4.4 35 10-44 47-84 (85)
359 2dgt_A RNA-binding protein 30; 98.5 2.3E-07 7.8E-12 58.6 6.5 38 11-48 44-83 (92)
360 2kvi_A Nuclear polyadenylated 98.5 4.6E-08 1.6E-12 62.4 3.1 39 10-48 44-84 (96)
361 1why_A Hypothetical protein ri 98.5 1.3E-07 4.3E-12 60.4 5.0 37 11-47 53-93 (97)
362 2jvo_A Nucleolar protein 3; nu 98.5 1.2E-07 4E-12 62.0 4.8 37 11-47 65-103 (108)
363 1x4c_A Splicing factor, argini 98.5 1.4E-07 5E-12 61.4 5.0 38 12-49 51-95 (108)
364 1whx_A Hypothetical protein ri 98.5 1.1E-07 3.9E-12 62.4 4.2 39 9-47 44-84 (111)
365 2hzc_A Splicing factor U2AF 65 98.5 1.8E-07 6.1E-12 58.3 4.8 36 8-43 50-86 (87)
366 1sjr_A Polypyrimidine tract-bi 98.5 2.3E-07 7.7E-12 65.1 5.5 42 8-49 81-126 (164)
367 2cq2_A Hypothetical protein LO 98.4 6.5E-07 2.2E-11 59.1 5.4 37 10-46 62-105 (114)
368 3zzy_A Polypyrimidine tract-bi 98.3 8.9E-07 3E-11 59.8 4.8 40 9-48 63-107 (130)
369 3beg_B Splicing factor, argini 98.2 1.2E-06 4.1E-11 57.7 4.4 36 12-47 52-94 (115)
370 3u1l_A PRE-mRNA-splicing facto 98.2 1.3E-06 4.4E-11 65.0 3.9 39 9-47 177-229 (240)
371 2e5i_A Heterogeneous nuclear r 98.1 3.5E-06 1.2E-10 56.4 5.2 37 12-48 62-103 (124)
372 2dnr_A Synaptojanin-1; RRM dom 98.0 8.9E-06 3E-10 51.1 4.6 36 13-48 51-87 (91)
373 3dxb_A Thioredoxin N-terminall 97.9 9.6E-06 3.3E-10 59.3 4.4 49 112-164 140-200 (222)
374 1whv_A Poly(A)-specific ribonu 97.8 9.2E-05 3.1E-09 46.9 6.9 56 99-160 14-70 (100)
375 2l9w_A U4/U6 snRNA-associated- 97.7 7.3E-05 2.5E-09 48.4 4.9 62 100-165 20-88 (117)
376 1ufw_A Synaptojanin 2; RNP dom 97.6 3.7E-05 1.3E-09 48.6 3.2 32 14-45 61-93 (95)
377 2dhx_A Poly (ADP-ribose) polym 97.6 0.00014 4.8E-09 46.5 5.8 56 99-158 6-66 (104)
378 3dxb_A Thioredoxin N-terminall 97.6 3.6E-05 1.2E-09 56.2 3.3 27 4-30 168-194 (222)
379 1uw4_A UPF3X; nonsense mediate 97.4 0.00049 1.7E-08 43.2 6.0 58 102-163 2-69 (91)
380 3tht_A Alkylated DNA repair pr 97.4 0.00013 4.4E-09 57.0 4.0 35 10-44 55-96 (345)
381 3ctr_A Poly(A)-specific ribonu 97.3 0.00059 2E-08 43.3 5.7 53 102-160 7-60 (101)
382 2dhx_A Poly (ADP-ribose) polym 97.2 0.00062 2.1E-08 43.5 5.2 36 12-47 48-84 (104)
383 2i2y_A Fusion protein consists 97.2 0.0002 6.7E-09 49.0 2.7 21 10-30 109-129 (150)
384 1wwh_A Nucleoporin 35, nucleop 96.4 0.0068 2.3E-07 39.8 5.1 56 98-158 21-78 (119)
385 1wey_A Calcipressin 1; structu 96.2 0.004 1.4E-07 39.9 3.3 61 101-165 5-72 (104)
386 2l08_A Regulator of nonsense t 95.7 0.0083 2.8E-07 38.0 3.1 59 100-162 8-76 (97)
387 3pq1_A Poly(A) RNA polymerase; 95.7 0.0073 2.5E-07 48.8 3.5 47 100-147 52-101 (464)
388 1owx_A Lupus LA protein, SS-B, 94.6 0.045 1.5E-06 36.1 4.3 32 13-44 57-93 (121)
389 2l9w_A U4/U6 snRNA-associated- 93.6 0.085 2.9E-06 34.1 3.9 31 12-42 63-95 (117)
390 3d45_A Poly(A)-specific ribonu 92.5 0.33 1.1E-05 39.7 6.9 56 100-161 439-495 (507)
391 3p3d_A Nucleoporin 53; structu 90.8 0.072 2.5E-06 35.5 1.0 52 101-157 7-80 (132)
392 3p3d_A Nucleoporin 53; structu 87.1 0.78 2.7E-05 30.5 4.0 36 11-46 62-98 (132)
393 1wey_A Calcipressin 1; structu 78.9 3.1 0.0001 26.4 4.1 34 14-47 49-84 (104)
394 1wwh_A Nucleoporin 35, nucleop 65.6 12 0.00039 24.4 4.6 35 11-45 59-95 (119)
395 2k5n_A Putative cold-shock pro 60.8 3.5 0.00012 24.4 1.3 10 10-19 13-22 (74)
396 2kcm_A Cold shock domain famil 59.3 3.8 0.00013 24.2 1.3 10 10-19 11-20 (74)
397 3cam_A Cold-shock domain famil 59.2 3.9 0.00013 23.6 1.3 9 10-18 12-20 (67)
398 1c9o_A CSPB, cold-shock protei 58.8 3.9 0.00013 23.4 1.3 10 10-19 12-21 (66)
399 4eyt_A Telomerase associated p 58.2 30 0.001 21.3 6.7 63 100-166 11-73 (129)
400 3ulj_A LIN28B, DNA-binding pro 57.4 4.6 0.00016 24.8 1.5 10 9-18 18-27 (90)
401 3a0j_A Cold shock protein; OB- 57.2 4.3 0.00015 23.8 1.3 9 10-18 12-20 (73)
402 1h95_A CSD, Y-box binding prot 56.7 4.6 0.00016 24.1 1.4 23 10-46 19-41 (79)
403 1g6p_A Cold shock protein TMCS 56.6 4.5 0.00015 23.2 1.3 10 10-19 11-20 (66)
404 3fut_A Dimethyladenosine trans 55.6 10 0.00036 28.1 3.5 34 102-136 111-144 (271)
405 3i2z_B RNA chaperone, negative 54.0 5.2 0.00018 23.3 1.3 11 9-19 15-25 (71)
406 3uzu_A Ribosomal RNA small sub 53.6 5.1 0.00018 29.9 1.5 34 102-135 115-148 (279)
407 2yty_A Cold shock domain-conta 49.3 6.8 0.00023 23.9 1.3 8 11-18 28-35 (88)
408 2ytx_A Cold shock domain-conta 48.4 7.1 0.00024 24.3 1.3 9 10-18 27-35 (97)
409 2ytv_A Cold shock domain-conta 48.2 4.8 0.00017 24.0 0.5 9 10-18 17-25 (79)
410 1wfq_A UNR protein; beta-barre 48.1 7.3 0.00025 23.8 1.3 9 11-19 28-36 (89)
411 1i4w_A Mitochondrial replicati 45.8 13 0.00043 28.9 2.7 22 103-124 144-165 (353)
412 2lss_A Cold shock-like protein 51.6 4.4 0.00015 23.6 0.0 10 10-19 15-24 (70)
413 3tqs_A Ribosomal RNA small sub 45.1 7.3 0.00025 28.6 1.2 33 104-136 99-131 (255)
414 1qyr_A KSGA, high level kasuga 44.7 20 0.0007 26.1 3.5 32 103-134 92-123 (252)
415 3aqq_A Calcium-regulated heat 43.5 11 0.00038 25.4 1.8 11 10-20 73-83 (147)
416 3ftd_A Dimethyladenosine trans 41.0 18 0.00062 26.2 2.8 33 103-135 97-129 (249)
417 1x65_A UNR protein; cell-free 39.3 10 0.00036 23.1 1.0 11 10-20 17-27 (89)
418 2v94_A RPS24, 30S ribosomal pr 37.6 18 0.00062 22.9 2.0 21 6-27 69-89 (107)
419 1xn9_A 30S ribosomal protein S 37.1 16 0.00056 22.9 1.7 22 6-28 60-81 (101)
420 3zzp_A TS9, ribosomal protein 37.0 64 0.0022 18.9 4.5 24 101-126 46-69 (77)
421 4dqz_A Methyltransferase type 36.7 45 0.0015 23.9 4.0 55 101-159 117-182 (230)
422 1ywx_A 30S ribosomal protein S 36.0 17 0.00059 22.8 1.7 19 7-26 61-79 (102)
423 2g1d_A 30S ribosomal protein S 34.9 15 0.00053 22.9 1.3 19 7-26 62-80 (98)
424 4aj5_1 SKA3, spindle and kinet 33.9 15 0.00051 23.0 1.1 12 115-126 90-101 (101)
425 2m0o_A PHD finger protein 1; t 33.9 27 0.00094 20.6 2.2 23 125-147 44-66 (79)
426 3lpe_A Putative transcription 32.2 44 0.0015 20.2 3.1 21 10-30 49-69 (92)
427 2ki0_A DS119; beta-alpha-beta, 30.0 34 0.0011 16.3 1.7 18 100-122 4-21 (36)
428 3ts2_A Protein LIN-28 homolog 29.8 13 0.00044 25.0 0.3 28 116-143 2-29 (148)
429 3h7h_B Transcription elongatio 29.5 50 0.0017 20.7 3.1 22 10-31 50-71 (106)
430 4hcz_A PHD finger protein 1; p 29.4 38 0.0013 18.9 2.2 22 126-147 22-43 (58)
431 2e5p_A Protein PHF1, PHD finge 26.1 43 0.0015 19.2 2.0 22 126-147 28-49 (68)
432 2bh8_A 1B11; transcription, mo 25.0 36 0.0012 21.0 1.8 22 10-45 27-48 (101)
433 2xzm_P RPS24E; ribosome, trans 24.0 42 0.0014 22.6 2.0 20 7-27 64-83 (149)
434 2e5q_A PHD finger protein 19; 23.7 54 0.0018 18.5 2.1 13 9-21 33-45 (63)
435 3lfj_A Manxb, phosphotransfera 23.3 1.5E+02 0.0051 20.6 4.9 29 12-42 98-126 (187)
436 3u5c_Y RP50, 40S ribosomal pro 21.4 50 0.0017 21.8 2.0 20 7-27 66-85 (135)
437 2dyj_A Ribosome-binding factor 20.8 1.5E+02 0.0052 17.9 4.6 34 125-162 30-65 (95)
No 1
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.93 E-value=1.2e-25 Score=158.96 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=100.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhcc
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (171)
|++|+.+|+++|||||+|.+.++|++|++ ++..++|+.|.|.++.++..
T Consensus 35 i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------------------- 85 (168)
T 1b7f_A 35 IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE----------------------------- 85 (168)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS-----------------------------
T ss_pred EEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc-----------------------------
Confidence 56788899999999999999999999998 48899999999998865421
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHH
Q 030822 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRS 150 (171)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~ 150 (171)
....++|||+|||+.+++++|+++|++||.|.++.|+++ ++||+|.+.++
T Consensus 86 -------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~--- 143 (168)
T 1b7f_A 86 -------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE--- 143 (168)
T ss_dssp -------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH---
T ss_pred -------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH---
Confidence 224689999999999999999999999999999999876 47999999999
Q ss_pred HHHHHHHHHhHhCCC
Q 030822 151 CFSKVSRNLWTAGCN 165 (171)
Q Consensus 151 ~a~~Ai~~l~~~~~~ 165 (171)
|.+|+..||+..+.
T Consensus 144 -A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 144 -AQEAISALNNVIPE 157 (168)
T ss_dssp -HHHHHHHHTTCCCT
T ss_pred -HHHHHHHhcCCEec
Confidence 99999999998663
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.93 E-value=1.7e-26 Score=170.28 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=99.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhcc
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (171)
|++|+.||+++|||||+|.+.++|++||+. +..+.|+.|.+.++.......
T Consensus 47 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~--------------------------- 99 (213)
T 4f02_A 47 VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR--------------------------- 99 (213)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH---------------------------
T ss_pred EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc---------------------------
Confidence 478999999999999999999999999984 789999999998775431100
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc------ceeEEecCCcccHHHH
Q 030822 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR------FWFCHLCGRSCSRSCF 152 (171)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d------~~fv~f~~~~~~~~~a 152 (171)
.....+|||+|||+.+|+++|+++|++||.|++|+|++| ++||+|.+.++ |
T Consensus 100 -------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~----a 156 (213)
T 4f02_A 100 -------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA----A 156 (213)
T ss_dssp -------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHH----H
T ss_pred -------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHH----H
Confidence 123578999999999999999999999999999999865 67999999999 9
Q ss_pred HHHHHHHhHhCCC
Q 030822 153 SKVSRNLWTAGCN 165 (171)
Q Consensus 153 ~~Ai~~l~~~~~~ 165 (171)
++||+.||+..++
T Consensus 157 ~~Ai~~lng~~~~ 169 (213)
T 4f02_A 157 ERAIEKMNGMLLN 169 (213)
T ss_dssp HHHHHHHTTCEET
T ss_pred HHHHHHhCCCEEC
Confidence 9999999987543
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=1.7e-25 Score=157.92 Aligned_cols=113 Identities=20% Similarity=0.328 Sum_probs=100.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhcc
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (171)
|++|+.+|+++|||||+|.+.++|++|++ ++..++|+.|.|.++.+...
T Consensus 34 ~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------------------- 84 (167)
T 1fxl_A 34 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA----------------------------- 84 (167)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-----------------------------
T ss_pred EEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-----------------------------
Confidence 35788899999999999999999999998 48899999999998865421
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHH
Q 030822 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRS 150 (171)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~ 150 (171)
....++|||+|||+.+++++|+++|++||.|.++.|++| ++||+|.+.++
T Consensus 85 -------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~--- 142 (167)
T 1fxl_A 85 -------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE--- 142 (167)
T ss_dssp -------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH---
T ss_pred -------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHH---
Confidence 224688999999999999999999999999999999865 47999999999
Q ss_pred HHHHHHHHHhHhCCC
Q 030822 151 CFSKVSRNLWTAGCN 165 (171)
Q Consensus 151 ~a~~Ai~~l~~~~~~ 165 (171)
|.+|++.||+..+.
T Consensus 143 -A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 143 -AEEAIKGLNGQKPS 156 (167)
T ss_dssp -HHHHHHHHTTCCCT
T ss_pred -HHHHHHHhcCCccC
Confidence 99999999998664
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=1.1e-26 Score=164.43 Aligned_cols=111 Identities=26% Similarity=0.488 Sum_probs=97.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhcCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 80 (171)
|++|+.||++||||||+|.+.++|++||+.++.++|+.|.|.++.++..
T Consensus 35 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~------------------------------- 83 (167)
T 2cjk_A 35 IMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE------------------------------- 83 (167)
T ss_dssp CCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHH-------------------------------
T ss_pred EEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhh-------------------------------
Confidence 5789999999999999999999999999998999999999988754311
Q ss_pred CCccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHH
Q 030822 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCF 152 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a 152 (171)
....++|||+|||+.+++++|+++|++||.|.++.|++| ++||+|.+.++ |
T Consensus 84 -----------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~----a 142 (167)
T 2cjk_A 84 -----------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA----V 142 (167)
T ss_dssp -----------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH----H
T ss_pred -----------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH----H
Confidence 123578999999999999999999999999999999976 68999999999 9
Q ss_pred HHHHHHHhHhCC
Q 030822 153 SKVSRNLWTAGC 164 (171)
Q Consensus 153 ~~Ai~~l~~~~~ 164 (171)
.+|++ ||+..+
T Consensus 143 ~~A~~-~~~~~~ 153 (167)
T 2cjk_A 143 DRVCQ-NKFIDF 153 (167)
T ss_dssp HHHHH-CSEECS
T ss_pred HHHHh-CCCEEe
Confidence 99997 776544
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.93 E-value=7.5e-26 Score=163.96 Aligned_cols=112 Identities=30% Similarity=0.552 Sum_probs=93.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (171)
|++|+.||++||||||+|.+.++|++||+. ++.++|+.|.|.++.++.....+.
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~------------------------- 99 (196)
T 1l3k_A 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG------------------------- 99 (196)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC---------------------------------
T ss_pred EEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccc-------------------------
Confidence 467889999999999999999999999995 789999999999987653321100
Q ss_pred CCCccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHH
Q 030822 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSC 151 (171)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~ 151 (171)
.....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++
T Consensus 100 -----------------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~---- 158 (196)
T 1l3k_A 100 -----------------AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS---- 158 (196)
T ss_dssp --------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHH----
T ss_pred -----------------cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHH----
Confidence 1334689999999999999999999999999999999976 48999999999
Q ss_pred HHHHHHH
Q 030822 152 FSKVSRN 158 (171)
Q Consensus 152 a~~Ai~~ 158 (171)
|.+|+..
T Consensus 159 A~~A~~~ 165 (196)
T 1l3k_A 159 VDKIVIQ 165 (196)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9999975
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-24 Score=153.39 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=97.0
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccC
Q 030822 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (171)
Q Consensus 2 ~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (171)
++|+ +|+++|||||+|.+.++|++|++ ++..+.|+.|.|.++.++...
T Consensus 33 ~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~----------------------------- 82 (166)
T 3md3_A 33 MIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQS----------------------------- 82 (166)
T ss_dssp ECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCC-----------------------------
T ss_pred EECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCC-----------------------------
Confidence 5665 57899999999999999999997 488999999999988654221
Q ss_pred CCCccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHH
Q 030822 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSC 151 (171)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~ 151 (171)
.....++|||+|||+.+++++|+++|++||.|.++.|++| ++||+|.+.++
T Consensus 83 -----------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~---- 141 (166)
T 3md3_A 83 -----------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD---- 141 (166)
T ss_dssp -----------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHH----
T ss_pred -----------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHH----
Confidence 1334689999999999999999999999999999999876 68999999999
Q ss_pred HHHHHHHHhHhCC
Q 030822 152 FSKVSRNLWTAGC 164 (171)
Q Consensus 152 a~~Ai~~l~~~~~ 164 (171)
|.+|+..||+..+
T Consensus 142 A~~A~~~l~g~~~ 154 (166)
T 3md3_A 142 AQNAMDSMQGQDL 154 (166)
T ss_dssp HHHHHHHHTTCEE
T ss_pred HHHHHHHhCCCcc
Confidence 9999999998764
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.92 E-value=1.7e-24 Score=159.04 Aligned_cols=124 Identities=17% Similarity=0.317 Sum_probs=97.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhcc
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (171)
|++|+.+|+++|||||+|.+.++|++||+ ++..|+|+.|.|.++........ .......
T Consensus 60 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~---------------~~~~~~~---- 120 (216)
T 2qfj_A 60 MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQP---------------IIDQLAE---- 120 (216)
T ss_dssp ECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHH---------------HHHHHHH----
T ss_pred EeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccch---------------hhhhhhc----
Confidence 46888999999999999999999999999 47899999999987654321100 0000000
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHH
Q 030822 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRS 150 (171)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~ 150 (171)
.....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++
T Consensus 121 ------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~--- 179 (216)
T 2qfj_A 121 ------------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS--- 179 (216)
T ss_dssp ------------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH---
T ss_pred ------------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH---
Confidence 0234689999999999999999999999999999999876 57999999999
Q ss_pred HHHHHHHHHhHhCCC
Q 030822 151 CFSKVSRNLWTAGCN 165 (171)
Q Consensus 151 ~a~~Ai~~l~~~~~~ 165 (171)
|.+|+..||+..+.
T Consensus 180 -A~~A~~~l~g~~~~ 193 (216)
T 2qfj_A 180 -SQDAVSSMNLFDLG 193 (216)
T ss_dssp -HHHHHHHHTTCBCS
T ss_pred -HHHHHHHccCCEeC
Confidence 99999999987653
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.91 E-value=1.6e-24 Score=153.85 Aligned_cols=108 Identities=18% Similarity=0.329 Sum_probs=94.0
Q ss_pred CCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccCCCCc
Q 030822 5 QGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (171)
Q Consensus 5 ~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (171)
..++++||||||+|.++++|++|+. +++.++|+.|.|.++.+...
T Consensus 45 ~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~---------------------------------- 90 (172)
T 2g4b_A 45 VQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP---------------------------------- 90 (172)
T ss_dssp EEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC----------------------------------
T ss_pred eEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC----------------------------------
Confidence 3467899999999999999999996 37899999999997643311
Q ss_pred cCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHH
Q 030822 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKV 155 (171)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~A 155 (171)
....++|||+|||+.+++++|+++|++||.|.++.|++| ++||+|.+.++ |.+|
T Consensus 91 --------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~----A~~A 152 (172)
T 2g4b_A 91 --------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV----TDQA 152 (172)
T ss_dssp --------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTH----HHHH
T ss_pred --------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHH----HHHH
Confidence 223688999999999999999999999999999999877 48999999999 9999
Q ss_pred HHHHhHhCC
Q 030822 156 SRNLWTAGC 164 (171)
Q Consensus 156 i~~l~~~~~ 164 (171)
+..||+..+
T Consensus 153 ~~~l~g~~~ 161 (172)
T 2g4b_A 153 IAGLNGMQL 161 (172)
T ss_dssp HHHHTTCEE
T ss_pred HHHcCCCEE
Confidence 999998654
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.91 E-value=4.9e-24 Score=154.60 Aligned_cols=129 Identities=17% Similarity=0.261 Sum_probs=98.7
Q ss_pred CCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccCCCC
Q 030822 4 DQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT 82 (171)
Q Consensus 4 D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (171)
+..++++||||||+|.+.++|++||. ++..|+|+.|.|.++.+.............
T Consensus 44 ~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~----------------------- 100 (198)
T 2yh0_A 44 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSV----------------------- 100 (198)
T ss_dssp EEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSC-----------------------
T ss_pred EeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcC-----------------------
Confidence 44568999999999999999999996 378999999999988654322111000000
Q ss_pred ccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHH
Q 030822 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSK 154 (171)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~ 154 (171)
..++. .........++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++
T Consensus 101 --~~~~~---~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~----a~~ 171 (198)
T 2yh0_A 101 --YVPGV---VSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV----TDQ 171 (198)
T ss_dssp --CCTTS---SCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSH----HHH
T ss_pred --CCCCC---ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHH----HHH
Confidence 00000 00111346799999999999999999999999999999999976 57999999999 999
Q ss_pred HHHHHhHhCC
Q 030822 155 VSRNLWTAGC 164 (171)
Q Consensus 155 Ai~~l~~~~~ 164 (171)
|+..||+..+
T Consensus 172 A~~~l~g~~~ 181 (198)
T 2yh0_A 172 AIAGLNGMQL 181 (198)
T ss_dssp HHHHHTTCEE
T ss_pred HHHHcCCCEE
Confidence 9999998654
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.91 E-value=2.4e-24 Score=153.15 Aligned_cols=114 Identities=18% Similarity=0.329 Sum_probs=93.9
Q ss_pred CCCCCCCC--CccceEEEEECCHHHHHHHHhc--CCccC---CeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhh
Q 030822 1 MPKDQGSK--AHRGIGFITFASADSVENLMVD--THELG---GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAAT 73 (171)
Q Consensus 1 i~~D~~tg--~srGfgFV~F~~~~~a~~Al~~--~~~i~---gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (171)
|++|+.+| ++||||||+|.+.++|++|++. +..+. ++.+.+.++.++...
T Consensus 35 i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 91 (175)
T 3nmr_A 35 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN----------------------- 91 (175)
T ss_dssp EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS-----------------------
T ss_pred EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc-----------------------
Confidence 35677777 9999999999999999999984 44443 566777665432110
Q ss_pred hhhccCCCCccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCc
Q 030822 74 RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRS 146 (171)
Q Consensus 74 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~ 146 (171)
....++|||+|||+.+|+++|+++|++||.|.++.|+++ ++||+|.+.+
T Consensus 92 ------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 92 ------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp ------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred ------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 234689999999999999999999999999999999876 5899999999
Q ss_pred ccHHHHHHHHHHHhHhCCC
Q 030822 147 CSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 147 ~~~~~a~~Ai~~l~~~~~~ 165 (171)
+ |.+|++.||+..+.
T Consensus 148 ~----A~~A~~~l~g~~~~ 162 (175)
T 3nmr_A 148 M----AQTAIKAMHQAQTM 162 (175)
T ss_dssp H----HHHHHHHHTTSCCC
T ss_pred H----HHHHHHHhcCCccc
Confidence 9 99999999987653
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.91 E-value=1.4e-24 Score=154.83 Aligned_cols=114 Identities=16% Similarity=0.212 Sum_probs=96.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 79 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (171)
+++|..+|++||||||+|.+.++|++||+ ++..+.|+.|.|.++.++....
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~---------------------------- 95 (175)
T 1fje_B 44 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKK---------------------------- 95 (175)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCST----------------------------
T ss_pred EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccc----------------------------
Confidence 46778899999999999999999999997 4789999999999887542210
Q ss_pred CCCccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEe---cCcceeEEecCCcccHHHHHHHH
Q 030822 80 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRFWFCHLCGRSCSRSCFSKVS 156 (171)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i---~~d~~fv~f~~~~~~~~~a~~Ai 156 (171)
....++|||+|||+.+++++|+++|++||.|..+.. .+.++||+|.+.++ |.+|+
T Consensus 96 ------------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~----A~~A~ 153 (175)
T 1fje_B 96 ------------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEAD----AEKNL 153 (175)
T ss_dssp ------------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHH----HHHHH
T ss_pred ------------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHH----HHHHH
Confidence 234689999999999999999999999999988711 13478999999999 99999
Q ss_pred HHHhHhCC
Q 030822 157 RNLWTAGC 164 (171)
Q Consensus 157 ~~l~~~~~ 164 (171)
..||+..+
T Consensus 154 ~~l~g~~~ 161 (175)
T 1fje_B 154 EEKQGAEI 161 (175)
T ss_dssp HHHTEEEE
T ss_pred HHhCCCEE
Confidence 99998654
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.90 E-value=7.7e-24 Score=161.94 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=100.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhcc
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (171)
|++|+.+|+++|||||+|.+.++|++|++ ++..++|+.|.|.++.++....
T Consensus 127 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~--------------------------- 179 (284)
T 3smz_A 127 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP--------------------------- 179 (284)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT---------------------------
T ss_pred EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc---------------------------
Confidence 36788999999999999999999999997 4889999999999987542211
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCceEEEeCCCCCC-CHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHH
Q 030822 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEA-TAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRS 150 (171)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~-te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~ 150 (171)
.....++|||+|||+.+ ++++|+++|++||.|.++.|++| ++||+|.+.++
T Consensus 180 ------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~--- 238 (284)
T 3smz_A 180 ------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEM--- 238 (284)
T ss_dssp ------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHH---
T ss_pred ------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHH---
Confidence 02356899999999995 99999999999999999999876 67999999999
Q ss_pred HHHHHHHHHhHhCC
Q 030822 151 CFSKVSRNLWTAGC 164 (171)
Q Consensus 151 ~a~~Ai~~l~~~~~ 164 (171)
|.+|+..||+..+
T Consensus 239 -A~~A~~~l~g~~~ 251 (284)
T 3smz_A 239 -AEEAQQQADGLSL 251 (284)
T ss_dssp -HHHHHHHHTTCEE
T ss_pred -HHHHHHHhCCCcc
Confidence 9999999998754
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.90 E-value=8.8e-24 Score=155.10 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=94.1
Q ss_pred ccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchh-hhhhhccCCCCccCC
Q 030822 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISA-ATRYAALGAPTLYDH 86 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 86 (171)
+||||||+|.+.++|++||+ ++..+.|+.|.|.++..+............+... ...+... ..+ ...
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~r---------~~~ 110 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCS-YKDFSESRNNR---------FST 110 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBS-EEECTTCTTCS---------CSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCcc-ccccCCCcccc---------ccC
Confidence 58999999999999999998 4899999999999986432210000000000000 0000000 000 000
Q ss_pred CCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccce--EEEEecCc------ceeEEecCCcccHHHHHHHHHH
Q 030822 87 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKR------FWFCHLCGRSCSRSCFSKVSRN 158 (171)
Q Consensus 87 ~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v--~~v~i~~d------~~fv~f~~~~~~~~~a~~Ai~~ 158 (171)
+.... .....++.++|||+|||+++|+++|+++|++||.| .+++|+.+ ++||+|.+.++ |.+||..
T Consensus 111 ~~~~~--~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~----A~~Ai~~ 184 (205)
T 3tyt_A 111 PEQAA--KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSD----ALETLGF 184 (205)
T ss_dssp HHHHT--TSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHH----HHHHHHH
T ss_pred ccccc--ccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHH----HHHHHHH
Confidence 00000 00012356899999999999999999999999999 89999875 68999999999 9999999
Q ss_pred HhHhCC
Q 030822 159 LWTAGC 164 (171)
Q Consensus 159 l~~~~~ 164 (171)
||+..+
T Consensus 185 lng~~~ 190 (205)
T 3tyt_A 185 LNHYQM 190 (205)
T ss_dssp HTTCEE
T ss_pred hCCCCc
Confidence 998754
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.89 E-value=1.4e-22 Score=154.73 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=58.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc---ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d---~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|+|+.+ ++||+|.+.++ |.+|+..||+..+.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQ----AGAARDALQGFKIT 270 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHH----HHHHHHHcCCcEeC
Confidence 446789999999999999999999999999999999875 58999999999 99999999997654
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.88 E-value=9.9e-23 Score=156.34 Aligned_cols=117 Identities=20% Similarity=0.305 Sum_probs=91.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhcc
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (171)
|++|+. |+++|||||+|.+.++|++|++ ++..++|+.|.|.++.++......
T Consensus 150 i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~------------------------- 203 (292)
T 2ghp_A 150 LPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT------------------------- 203 (292)
T ss_dssp CC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------------------
T ss_pred EEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-------------------------
Confidence 456654 8999999999999999999999 488999999999998765332211
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCceEEEeCCCCC-CCHHHHHHHhhcccceEEEEecCc---------ceeEEecCCccc
Q 030822 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKR---------FWFCHLCGRSCS 148 (171)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~-~te~~L~~~F~~fG~v~~v~i~~d---------~~fv~f~~~~~~ 148 (171)
.......++|||+|||+. +++++|+++|++||.|.+|.|++| ++||+|.+.++
T Consensus 204 ----------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~- 266 (292)
T 2ghp_A 204 ----------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS- 266 (292)
T ss_dssp -------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHH-
T ss_pred ----------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHH-
Confidence 001345789999999999 999999999999999999999876 37999999999
Q ss_pred HHHHHHHHHHHhHhCC
Q 030822 149 RSCFSKVSRNLWTAGC 164 (171)
Q Consensus 149 ~~~a~~Ai~~l~~~~~ 164 (171)
|.+|+ .||+..+
T Consensus 267 ---A~~A~-~l~g~~~ 278 (292)
T 2ghp_A 267 ---AERAL-QMNRSLL 278 (292)
T ss_dssp ---HHHHG-GGTTEEE
T ss_pred ---HHHHH-HhcCCEE
Confidence 99999 9998754
No 16
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=7.9e-23 Score=143.94 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=85.0
Q ss_pred CCccceEEEEECCHHHHHHHHhc---CCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccCCCCcc
Q 030822 8 KAHRGIGFITFASADSVENLMVD---THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 84 (171)
Q Consensus 8 g~srGfgFV~F~~~~~a~~Al~~---~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (171)
.+++|||||+|.+.++|++|++. ...++|... +..............
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------------------------- 59 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWT-YDDATKTFTVTEGSH----------------------------- 59 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEE-EETTTTEEEEECCCC-----------------------------
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCccc-ccCcccccccccccc-----------------------------
Confidence 37999999999999999999974 233444332 221111000000000
Q ss_pred CCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHH
Q 030822 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVS 156 (171)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai 156 (171)
...........++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+
T Consensus 60 ------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~----a~~A~ 129 (158)
T 2kn4_A 60 ------HHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD----AEDAM 129 (158)
T ss_dssp ------CSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHH----HHHHH
T ss_pred ------ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHH----HHHHH
Confidence 0000001345789999999999999999999999999999999987 58999999999 99999
Q ss_pred HHHhHhCCC
Q 030822 157 RNLWTAGCN 165 (171)
Q Consensus 157 ~~l~~~~~~ 165 (171)
..||+..+.
T Consensus 130 ~~l~g~~~~ 138 (158)
T 2kn4_A 130 DAMDGAVLD 138 (158)
T ss_dssp HHSTTEESS
T ss_pred HHhCCCEEC
Confidence 999987653
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.87 E-value=9.9e-22 Score=146.24 Aligned_cols=138 Identities=14% Similarity=0.213 Sum_probs=95.8
Q ss_pred cceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccCCCCccCCCC
Q 030822 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (171)
Q Consensus 11 rGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (171)
+|||||+|.+.++|++||+ ++..+.|+.|.|.++.++............. ....+.... ......+.
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~ 140 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQG---LTKDYGNSP--------LHRFKKPG 140 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTT---TEEECTTCS--------SCCCCSTT
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccc---cccccccCc--------ccccCCcc
Confidence 8999999999999999998 4889999999999987653321110000000 000000000 00000000
Q ss_pred CCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhccc-ceEEEEec---CcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVP---KRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 89 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG-~v~~v~i~---~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
... .....++.++|||+|||+.+++++|+++|++|| .|.+|.|+ +.++||+|.+.++ |.+|+..||+..+
T Consensus 141 ~~~--~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~----A~~Ai~~l~g~~~ 214 (229)
T 2adc_A 141 SKN--FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE----AVQALIDLHNHDL 214 (229)
T ss_dssp SGG--GTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHH----HHHHHHHHTTCBS
T ss_pred ccc--cccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHH----HHHHHHHHCCCcc
Confidence 000 001134579999999999999999999999999 99999995 3588999999999 9999999999876
Q ss_pred C
Q 030822 165 N 165 (171)
Q Consensus 165 ~ 165 (171)
.
T Consensus 215 ~ 215 (229)
T 2adc_A 215 G 215 (229)
T ss_dssp S
T ss_pred C
Confidence 5
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.87 E-value=9.7e-22 Score=142.80 Aligned_cols=138 Identities=14% Similarity=0.210 Sum_probs=96.3
Q ss_pred cceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccCCCCccCCCC
Q 030822 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 88 (171)
Q Consensus 11 rGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (171)
+|||||+|.+.++|++|++ ++..++|+.|.|.++.++............ .....+.... ......++
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~r~~~~~ 109 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQ---GLTKDYGNSP--------LHRFKKPG 109 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSS---SCEEESSCCC--------TTSSSSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccc---cccccccCCc--------hhhccCcc
Confidence 8999999999999999998 488999999999998765432211100000 0000000000 00000000
Q ss_pred CCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhccc-ceEEEEecC---cceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 89 SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPK---RFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 89 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG-~v~~v~i~~---d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
... .....++.++|||+|||+.+++++|+++|++|| .|.++.|++ .++||+|.+.++ |.+|+..||+..+
T Consensus 110 ~~~--~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~ 183 (198)
T 1qm9_A 110 SKN--FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEE----AVQALIDLHNHDL 183 (198)
T ss_dssp CCC--CSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHH----HHHHHHHHTSSCC
T ss_pred ccc--cccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHH----HHHHHHHhcCCcc
Confidence 000 001134579999999999999999999999999 999999954 578999999999 9999999999776
Q ss_pred C
Q 030822 165 N 165 (171)
Q Consensus 165 ~ 165 (171)
.
T Consensus 184 ~ 184 (198)
T 1qm9_A 184 G 184 (198)
T ss_dssp S
T ss_pred C
Confidence 4
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.86 E-value=2.2e-21 Score=147.04 Aligned_cols=96 Identities=24% Similarity=0.255 Sum_probs=88.0
Q ss_pred CCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccCCCCccC
Q 030822 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (171)
Q Consensus 8 g~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (171)
+++||||||+|.+.++|++|+. ++..|.|+.|.|.++.+
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--------------------------------------- 95 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--------------------------------------- 95 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC---------------------------------------
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc---------------------------------------
Confidence 4679999999999999999998 48899999999997642
Q ss_pred CCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHH
Q 030822 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRN 158 (171)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~ 158 (171)
..+|||+|||+.+|+++|+++|++||.|.+|.|++| ++||+|.+.++ |.+|+..
T Consensus 96 ---------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~----A~~A~~~ 156 (261)
T 3sde_A 96 ---------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP----ARKALER 156 (261)
T ss_dssp ---------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHH----HHHHHHH
T ss_pred ---------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHH----HHHHHHH
Confidence 478999999999999999999999999999999866 67999999999 9999999
Q ss_pred HhH
Q 030822 159 LWT 161 (171)
Q Consensus 159 l~~ 161 (171)
||+
T Consensus 157 l~~ 159 (261)
T 3sde_A 157 CGD 159 (261)
T ss_dssp HHH
T ss_pred hcC
Confidence 965
No 20
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=2.2e-21 Score=135.57 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=94.6
Q ss_pred CCCccceEEEEECCHHHHHHHHh---cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccCCCCc
Q 030822 7 SKAHRGIGFITFASADSVENLMV---DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 83 (171)
Q Consensus 7 tg~srGfgFV~F~~~~~a~~Al~---~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (171)
..+.+|+++|+|.+.++|++|++ ++..++| .|.+.++..+.........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~--------------------------- 60 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH--------------------------- 60 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS---------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc---------------------------
Confidence 45679999999999999999997 4678999 9999977643211100000
Q ss_pred cCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc---ceeEEecCCcccHHHHHHHHHHHh
Q 030822 84 YDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---FWFCHLCGRSCSRSCFSKVSRNLW 160 (171)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d---~~fv~f~~~~~~~~~a~~Ai~~l~ 160 (171)
.............++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |.+|+..||
T Consensus 61 -----~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~----a~~A~~~l~ 131 (150)
T 2i2y_A 61 -----HHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRD----AADAVRELD 131 (150)
T ss_dssp -----CCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHH----HHHHHHHHS
T ss_pred -----ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHH----HHHHHHHcC
Confidence 000000111445799999999999999999999999999999999965 88999999999 999999999
Q ss_pred HhCCC
Q 030822 161 TAGCN 165 (171)
Q Consensus 161 ~~~~~ 165 (171)
+..+.
T Consensus 132 g~~~~ 136 (150)
T 2i2y_A 132 GRTLC 136 (150)
T ss_dssp SSCSS
T ss_pred CCEEC
Confidence 87653
No 21
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.84 E-value=1.1e-20 Score=144.45 Aligned_cols=99 Identities=14% Similarity=0.276 Sum_probs=89.5
Q ss_pred CCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccCCCCccC
Q 030822 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 85 (171)
Q Consensus 8 g~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (171)
++++|||||+|.+.++|++|++ ++..+.|+.|.|.++.
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---------------------------------------- 93 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---------------------------------------- 93 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----------------------------------------
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----------------------------------------
Confidence 6789999999999999999998 4788999999998642
Q ss_pred CCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHH
Q 030822 86 HPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSR 157 (171)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~ 157 (171)
..++|||+|||+.+++++|+++|++||.|.++.|++| ++||+|.+.++ |.+|+.
T Consensus 94 --------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~----a~~A~~ 155 (284)
T 3smz_A 94 --------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS----AARAKS 155 (284)
T ss_dssp --------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH----HHHHHH
T ss_pred --------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHH----HHHHHH
Confidence 2478999999999999999999999999999999865 58999999999 999999
Q ss_pred HHhHhCC
Q 030822 158 NLWTAGC 164 (171)
Q Consensus 158 ~l~~~~~ 164 (171)
.||+..+
T Consensus 156 ~l~~~~~ 162 (284)
T 3smz_A 156 DLLGKPL 162 (284)
T ss_dssp HHTTCEE
T ss_pred HhCCCEe
Confidence 9998654
No 22
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.83 E-value=1.2e-20 Score=144.74 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=89.4
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccCC
Q 030822 2 PKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 80 (171)
Q Consensus 2 ~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 80 (171)
++|+.+ ++|||||+|.+.++|++||+ ++..++|+.|.|.++
T Consensus 74 ~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~------------------------------------ 115 (292)
T 2ghp_A 74 ADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL------------------------------------ 115 (292)
T ss_dssp EECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC------------------------------------
T ss_pred EECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC------------------------------------
Confidence 455533 68999999999999999997 478999999999854
Q ss_pred CCccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhccc-ceEEEEecCc-------ceeEEecCCcccHHHH
Q 030822 81 PTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKR-------FWFCHLCGRSCSRSCF 152 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG-~v~~v~i~~d-------~~fv~f~~~~~~~~~a 152 (171)
..++|||+|||+.+++++|+++|++|| .|.+|.|+++ ++||.|.+.++ |
T Consensus 116 -------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~----a 172 (292)
T 2ghp_A 116 -------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKED----A 172 (292)
T ss_dssp -------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHH----H
T ss_pred -------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHH----H
Confidence 258899999999999999999999999 9999999865 58999999999 9
Q ss_pred HHHHHHHhHhCCC
Q 030822 153 SKVSRNLWTAGCN 165 (171)
Q Consensus 153 ~~Ai~~l~~~~~~ 165 (171)
.+|+..||+..+.
T Consensus 173 ~~A~~~l~g~~~~ 185 (292)
T 2ghp_A 173 RYCVEKLNGLKIE 185 (292)
T ss_dssp HHHHHHHTTCEET
T ss_pred HHHHHHhCCCEeC
Confidence 9999999986553
No 23
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=106.13 Aligned_cols=63 Identities=21% Similarity=0.379 Sum_probs=59.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|+++++||+|.+.++ |++|+..||+..+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~----a~~A~~~l~g~~~ 69 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAED----AVEAIRGLDNTEF 69 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHH----HHHHHHHHTTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHH----HHHHHHHhCCCee
Confidence 45679999999999999999999999999999999999999999999999 9999999998754
No 24
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=104.12 Aligned_cols=63 Identities=27% Similarity=0.377 Sum_probs=59.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|+++++||+|.+.++ |++|+..||+..+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~----a~~A~~~l~g~~~ 68 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEAD----AKAAIAQLNGKEV 68 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHH----HHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHH----HHHHHHHhCCCEE
Confidence 45679999999999999999999999999999999999999999999999 9999999998654
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=106.90 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=56.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.+++|||+|||+++|+++|+++|++||+|.+|+|++| ++||+|.+.++ |++|++.||+..+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~----A~~Ai~~lng~~~ 86 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD----AERAINTLNGLRL 86 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHH----HHHHHHHhCCCEE
Confidence 4689999999999999999999999999999999876 57999999999 9999999998654
No 26
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-17 Score=107.15 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=55.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhH
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWT 161 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~ 161 (171)
+.+.++|||+|||+++|+++|+++|++||.|.+|.|+++ ++||+|.+.++ |+.|+..|++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~----A~~Ai~~l~~ 74 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEA----ANTMVNYYTS 74 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHH----HHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHH----HHHHHHHhcc
Confidence 346799999999999999999999999999999999975 67999999999 9999999875
No 27
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.6e-17 Score=102.93 Aligned_cols=64 Identities=28% Similarity=0.542 Sum_probs=59.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+++++++|+++|++||.|.+|.|++.++||+|.+.++ |++|+..||+..++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTA----AEDAIRNLHHYKLH 68 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHH----HHHHHHHHTTCBCS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHH----HHHHHHHhcCCccC
Confidence 44679999999999999999999999999999999999999999999999 99999999987654
No 28
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=5.1e-17 Score=106.31 Aligned_cols=64 Identities=27% Similarity=0.303 Sum_probs=59.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..+.++|||+|||+.+++++|+++|++||.|.+|.|+++++||+|.+.++ |++|+..||+..++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~----a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDG----AVKAMEEMNGKDLE 71 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHH----HHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHH----HHHHHHHHCCCccC
Confidence 44579999999999999999999999999999999999999999999999 99999999987543
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=3.1e-17 Score=109.55 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=56.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
...+|||+|||+++|+++|+++|++||.|.+|+|++| ++||+|.+.++ |++||+.||+..+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~----A~~Ai~~l~~~~~ 70 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA----AERAIEKMNGMLL 70 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHH----HHHHHHHHTTCEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHH----HHHHHHHcCCCEE
Confidence 3578999999999999999999999999999999976 68999999999 9999999998754
No 30
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.5e-17 Score=105.15 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=56.5
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHhhcccceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhHhC
Q 030822 99 RIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWTAG 163 (171)
Q Consensus 99 ~~~~~lfV~nLp~-~~te~~L~~~F~~fG~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~~~ 163 (171)
.+.++|||+|||+ .+++++|+++|++||.|.+|.|+++ ++||+|.+.++ |+.||..||+..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~----A~~Ai~~l~~~~ 76 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTED----AQAAVDYYTTTP 76 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHH----HHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHH----HHHHHHHHcCCC
Confidence 3579999999999 9999999999999999999999986 68999999999 999999999753
No 31
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=103.73 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=57.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC--cceeEEecCCcccHHHHHHHHHHHhHhC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RFWFCHLCGRSCSRSCFSKVSRNLWTAG 163 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~--d~~fv~f~~~~~~~~~a~~Ai~~l~~~~ 163 (171)
.+++++|||+|||+.+|+++|+++|++||+|.+|.|++ .++||+|.+.++ |..|+..||+..
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~----A~~Av~~ln~~~ 81 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLG----ACNAVNYAADNQ 81 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHH----HHHHHHHHHHSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHH----HHHHHHHhcCCC
Confidence 45689999999999999999999999999999999984 578999999999 999999999864
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=102.75 Aligned_cols=64 Identities=25% Similarity=0.400 Sum_probs=58.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRD----AQDAEAAMDGAELD 81 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSH----HHHHHHHHSSCCBT
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHH----HHHHHHHcCCCEEC
Confidence 556799999999999999999999999999999999865 68999999999 99999999987654
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=8.3e-17 Score=106.72 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=57.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
++.++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++||+.||+..+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~----A~~Ai~~lng~~~ 73 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRG----AKETVKNLHLTSV 73 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHH----HHHHHHHhCCCEE
Confidence 45789999999999999999999999999999999866 57999999999 9999999998754
No 34
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=9.1e-17 Score=106.06 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=58.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC-cceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~-d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+++++++|+++|++||+|.+|.|++ .++||+|.+.++ |++||+.||+..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~----a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKED----MTYAVRKLDNTKF 75 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHH----HHHHHHHSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHH----HHHHHHHHCcCCc
Confidence 45679999999999999999999999999999999999 589999999999 9999999998755
No 35
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-16 Score=102.30 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=55.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhHh
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWTA 162 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~~ 162 (171)
..+.++|||+|||+.+++++|+++|++||.|.+|.|+++ ++||+|.+.++ |++|+..|++.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~----A~~Ai~~l~~~ 74 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEA----AITMVNYYSAV 74 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHH----HHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHH----HHHHHHHhccC
Confidence 456789999999999999999999999999999999975 68999999999 99999988753
No 36
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.4e-16 Score=100.69 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=59.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..+.++|||+|||+.+++++|+++|++||.|.+|.|+++ ++||+|.+.++ |++|++.||+..++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 79 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDA----AQAACAKMRGFPLG 79 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHH----HHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHH----HHHHHHHHCCCEeC
Confidence 345789999999999999999999999999999999976 88999999999 99999999998765
No 37
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-16 Score=102.21 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=56.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhHhC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWTAG 163 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~~~ 163 (171)
.++.++|||+|||+.+++++|+++|++||.|.+|.|+++ ++||+|.+.++ |++|++.||+..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~----A~~Ai~~l~~~~ 75 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDS----AKECVTFAADVP 75 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHH----HHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHH----HHHHHHHhccCC
Confidence 456799999999999999999999999999999999864 78999999999 999999998753
No 38
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=106.03 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=56.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhHh
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWTA 162 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~~ 162 (171)
.++.++|||+|||+++++++|+++|++||.|++|.|+++ ++||+|.+.++ |++|++.|++.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~----A~~Ai~~l~~~ 90 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEA----ANTMVNYYTSV 90 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHH----HHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHH----HHHHHHHhccC
Confidence 456789999999999999999999999999999999965 78999999999 99999999864
No 39
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=100.51 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=58.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
.++.++|||+|||+.+++++|+++|++||+|.+|.|++| ++||+|.+.++ |++|++.||+..+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS----AQNCTRAINNKQLF 84 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHH----HHHHHHHTTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHH----HHHHHHHcCCCeeC
Confidence 456799999999999999999999999999999999875 68999999999 99999999986543
No 40
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=7.5e-17 Score=110.70 Aligned_cols=64 Identities=23% Similarity=0.379 Sum_probs=58.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~----A~~Ai~~l~g~~i~ 115 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD----AEDAMDAMDGAVLD 115 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHH----HHHHHTTTTTCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHH----HHHHHHHcCCCEEC
Confidence 445789999999999999999999999999999999876 68999999999 99999999987754
No 41
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=101.72 Aligned_cols=64 Identities=25% Similarity=0.400 Sum_probs=58.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD----ADRAREKLHGTVVE 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHH----HHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 456799999999999999999999999999999999965 78999999999 99999999987643
No 42
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=98.79 Aligned_cols=63 Identities=17% Similarity=0.273 Sum_probs=58.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
.+.++|||+|||+.+++++|+++|++||+|.+|.|++| ++||+|.+.++ |++|+..||+..+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSA----AQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHH----HHHHHHHHHHHTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHH----HHHHHHHhcCCeEe
Confidence 35789999999999999999999999999999999876 68999999999 99999999998654
No 43
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=2.5e-16 Score=104.18 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=58.8
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHhhcccceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~-~te~~L~~~F~~fG~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
...++|||+|||+. +++++|+++|++||.|.+|.|.+.++||+|.+.++ |++|+..||+..++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERH----ARAAVLGENGRVLA 88 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHH----HHHHHHHHTTCEET
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHH----HHHHHHHcCCCEEC
Confidence 34689999999999 99999999999999999999999999999999999 99999999987653
No 44
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.3e-16 Score=101.22 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=58.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-----ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-----FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-----~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|+.+ ++||+|.+.++ |++|++.||+..++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD----AEDAVYGRDGYDYD 87 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHH----HHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHH----HHHHHHHcCCCEEC
Confidence 456799999999999999999999999999999999865 78999999999 99999999987543
No 45
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.1e-16 Score=102.08 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=58.6
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhcccceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~-~~te~~L~~~F~~fG~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.++.++|||+|||+ .+++++|+++|++||.|.+|.|.+.++||+|.+.++ |++|+..||+..+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~----A~~A~~~l~g~~~ 70 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQS----VRDAIECESQEMN 70 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHH----HHHHHHHHTCSSC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHH----HHHHHHHcCCCee
Confidence 45689999999999 999999999999999999999999999999999999 9999999998765
No 46
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=1.7e-16 Score=100.11 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=55.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC--cceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~--d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.+..|||+||++.+||++|+++|.+||+|.+++++. .++||+|.++++ |++|++.||+..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~e----A~~Ai~~Ln~~~l 68 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREE----ANKAQMALNNCVL 68 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHH----HHHHHHHHTTEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHH----HHHHHHHhcCCEE
Confidence 467899999999999999999999999999999874 578899999999 9999999998543
No 47
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.6e-16 Score=100.56 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=59.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcc--cceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~f--G~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++| |.|.+|.++++++||+|.+.++ |++|+..||+..++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNRED----AVEAMKALNGKVLD 77 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHH----HHHHHHHHSSEEET
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHH----HHHHHHHhCCCEeC
Confidence 4567999999999999999999999999 9999999999999999999999 99999999987553
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=8.1e-16 Score=100.76 Aligned_cols=64 Identities=23% Similarity=0.323 Sum_probs=58.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++||..||+..+.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~----A~~Ai~~l~g~~~~ 82 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTE----AQAAIHALHGSQTM 82 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHH----HHHHHHHHSSCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHH----HHHHHHHHcCCccC
Confidence 345799999999999999999999999999999999965 68999999999 99999999987654
No 49
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=100.42 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=58.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||+|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES----VSYAIALLNGIRLY 83 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHH----HHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 456799999999999999999999999999999999876 68999999999 99999999986543
No 50
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=4.5e-16 Score=100.82 Aligned_cols=63 Identities=22% Similarity=0.418 Sum_probs=59.5
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhcccceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~-~~te~~L~~~F~~fG~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.+..++|||+|||+ .+++++|+++|++||.|.+|.|.+.++||+|.+.++ |.+|+..||+..+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~----A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQS----VRDAIEXESQEMN 82 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHH----HHHHHHHHTTSEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHH----HHHHHHHcCCCEE
Confidence 45689999999999 999999999999999999999999999999999999 9999999998764
No 51
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.7e-16 Score=101.14 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=58.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED----ADYAIKIMDMIKLY 83 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHH----HHHHHHHSSSCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHH----HHHHHHHhCCCeEC
Confidence 456799999999999999999999999999999999876 68999999999 99999999987654
No 52
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=101.11 Aligned_cols=64 Identities=27% Similarity=0.450 Sum_probs=58.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc---------ceeEEecCCcccHHHHHHHHHHH-hHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---------FWFCHLCGRSCSRSCFSKVSRNL-WTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d---------~~fv~f~~~~~~~~~a~~Ai~~l-~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|+++ ++||+|.+.++ |++|+..| |+..++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD----AKKAFNALCHSTHLY 85 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHH----HHHHHHHHHTCCBSS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHH----HHHHHHHhccCCeEC
Confidence 456899999999999999999999999999999999877 67999999999 99999999 776654
No 53
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=2.5e-16 Score=105.14 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=57.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC-cceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-RFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~-d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
...++|||+|||+++++++|+++|++||+|.+|.|++ .++||+|.+.++ |++||+.||+..++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~----a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKED----MTYAVRKLDNTKFR 77 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHH----HHHHHHHHTTCBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 4578999999999999999999999999999999999 689999999999 99999999987664
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=99.29 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=58.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
...++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSEC----ARRALEQLNGFELA 73 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHH----HHHHHHHHTTCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHH----HHHHHHHhCCCeeC
Confidence 35789999999999999999999999999999999876 68999999999 99999999987654
No 55
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.2e-16 Score=102.91 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=56.4
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHhhcccceEEEEecC--cceeEEecCCcccHHHHHHHHHHHhHhC
Q 030822 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPK--RFWFCHLCGRSCSRSCFSKVSRNLWTAG 163 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~-~te~~L~~~F~~fG~v~~v~i~~--d~~fv~f~~~~~~~~~a~~Ai~~l~~~~ 163 (171)
..++++|||+|||++ +++++|+++|++||.|.+|.|++ .++||+|.+.++ |+.|+..||+..
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~----A~~Ai~~l~~~~ 86 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETRED----AMAMVDHCLKKA 86 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHH----HHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHH----HHHHHHHhccCC
Confidence 446899999999998 99999999999999999999986 478999999999 999999998743
No 56
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.5e-16 Score=100.61 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=58.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEE----ATKAVTEMNGRIVA 81 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHH----HHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHH----HHHHHHHhCCCEeC
Confidence 456899999999999999999999999999999999965 78999999999 99999999987654
No 57
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=99.48 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=58.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|+.| ++||+|.+.++ |++|+..||+..++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQ----ASQAVMKMDGMTIK 84 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHH----HHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 456789999999999999999999999999999999874 68999999999 99999999987654
No 58
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.7e-16 Score=100.64 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=58.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|++.||+..++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD----AKDAMMAMNGKSVD 80 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHH----HHHHHHHHTTCCTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 446799999999999999999999999999999999876 78999999999 99999999987654
No 59
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.6e-16 Score=100.11 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCCceEEEeCCCCCCCHHHHH----HHhhcccceEEEEec-----CcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVP-----KRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~----~~F~~fG~v~~v~i~-----~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
...++|||+|||+.+++++|+ ++|++||+|.+|.|+ +.++||+|.+.++ |++||..||+..+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~----A~~Ai~~l~g~~~ 77 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQD----AIGAVNSLHRYKI 77 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHH----HHHHHHHHTTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHH----HHHHHHHhCCCEE
Confidence 457899999999999999999 999999999999999 4578999999999 9999999998754
No 60
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=3.4e-16 Score=103.40 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=59.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++.++||+|.+.++ |++|+..||+..+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~----A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAES----AAKAIEEVHGKSF 90 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHH----HHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHH----HHHHHHHcCCCEE
Confidence 45679999999999999999999999999999999999999999999999 9999999998765
No 61
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.4e-16 Score=99.44 Aligned_cols=63 Identities=24% Similarity=0.440 Sum_probs=57.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+. ||+..++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS----VDQAVN-MHFHDIM 77 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHH----HHHHHH-HCCCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHH----HHHHHH-hCCCEEC
Confidence 456799999999999999999999999999999999865 68999999999 999998 8877654
No 62
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=8.6e-16 Score=102.28 Aligned_cols=63 Identities=27% Similarity=0.348 Sum_probs=58.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~ 82 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD----AENAIQQMGGQWL 82 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH----HHHHHHHTTTCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHH----HHHHHHHhCCCEE
Confidence 456899999999999999999999999999999999976 68999999999 9999999998654
No 63
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=6e-16 Score=97.49 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=58.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..+.++|||+|||+.+++++|+++|++||+|.++.|++| ++||+|.+.++ |++|++.||+..++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED----AAAAIDNMNESELF 75 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHH----HHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 346799999999999999999999999999999999765 68999999999 99999999987653
No 64
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.7e-16 Score=100.07 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=58.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRD----AAAALAAMNGRKIL 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHH----HHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHH----HHHHHHHhCCCCcC
Confidence 456799999999999999999999999999999999875 78999999999 99999999987543
No 65
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=5.4e-16 Score=98.09 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=56.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.+.++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~ 73 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD----AENAIQQMGGQWL 73 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHH----HHHHHHHcCCCEE
Confidence 35789999999999999999999999999999999876 68999999999 9999999998654
No 66
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.5e-16 Score=98.54 Aligned_cols=64 Identities=22% Similarity=0.156 Sum_probs=58.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..+.++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD----AKEAKERANGMELD 83 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHH----HHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 456799999999999999999999999999999999865 67999999999 99999999986543
No 67
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.2e-16 Score=101.01 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=58.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||+|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED----AARAIAGVSGFGYD 83 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHH----HHHHHHHTTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHH----HHHHHHHcCCCeeC
Confidence 456799999999999999999999999999999999976 68999999999 99999999987543
No 68
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=98.36 Aligned_cols=64 Identities=27% Similarity=0.467 Sum_probs=58.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||+|.+|.|+++ ++||+|.+.++ |++|++.||+..++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~----a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTL----AEIAKVELDNMPLR 77 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHH----HHHHHHHHTTCCBT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHH----HHHHHHHhCCCEeC
Confidence 456789999999999999999999999999999999974 77899999999 99999999987654
No 69
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=99.19 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=58.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||+|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEH----AVKAYAEVDGQVFQ 76 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHH----HHHHHHHTTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 345799999999999999999999999999999999875 58999999999 99999999987654
No 70
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.61 E-value=6.2e-16 Score=99.83 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=55.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccc--eEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHh
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTA 162 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~--v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~ 162 (171)
...-.+|||+|||+++|+++|+++|++||. |.+|+|++| ++||+|.+.++ |++|++.||+.
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~----A~~Ai~~lng~ 76 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMD----ASQLLQILQSL 76 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHH----HHHHHHHHHSS
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHH----HHHHHHHhcCC
Confidence 345689999999999999999999999995 679999876 67999999999 99999999985
No 71
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=1.3e-15 Score=99.96 Aligned_cols=63 Identities=27% Similarity=0.501 Sum_probs=58.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|++.||+..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERES----ALKAQSALHEQKT 80 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHH----HHHHHHHHTTTCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHH----HHHHHHHhcCCcc
Confidence 456799999999999999999999999999999999875 67999999999 9999999999765
No 72
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=1.4e-15 Score=97.17 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=58.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC------cceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK------RFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~------d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++ .++||+|.+.++ |++|+..||+..++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~----a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEV----AERACRMMNGMKLS 74 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHH----HHHHHHHHTTCCBT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 44679999999999999999999999999999999986 478999999999 99999999987653
No 73
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=7.6e-16 Score=102.16 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=57.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC--cceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~--d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
...++|||+|||+.+++++|+++|++||.|.+|.|++ .++||+|.+.++ |++||..||+..+.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~----A~~Ai~~l~g~~~~ 72 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLE----ARKAFRHLAYSKFH 72 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHH----HHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHH----HHHHHHHhCCCEEC
Confidence 3468999999999999999999999999999999975 478999999999 99999999987654
No 74
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=4.1e-16 Score=103.43 Aligned_cols=63 Identities=11% Similarity=0.002 Sum_probs=57.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhccc-ceEEEEec----CcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVP----KRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG-~v~~v~i~----~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+++++++|+++|++|| .|..+.|+ +.++||+|.+.++ |++||..||+..+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~----A~~Ai~~lng~~l 92 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEI----LVEALERLNNIEF 92 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHH----HHHHHHHTTTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHH----HHHHHHHcCCCEE
Confidence 34578999999999999999999999999 99999996 5689999999999 9999999998654
No 75
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.6e-16 Score=100.67 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=58.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..+.++|||+|||+.+++++|+++|++||.|++|.|++| ++||+|.+.++ |++|++.||+..++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED----AAAAIDNMNESELF 80 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHH----HHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 446799999999999999999999999999999999866 68999999999 99999999986543
No 76
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=100.69 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=58.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIE----AVQAISMFNGQLLF 82 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHH----HHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHH----HHHHHHHhCCCEeC
Confidence 445789999999999999999999999999999999976 78999999999 99999999987553
No 77
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.1e-16 Score=102.76 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=57.1
Q ss_pred CCCceEEE--eCCCCCCCHHHHHHHhhcccceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFV--GRLPQEATAEDLRRYFSRFGRILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV--~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.+.++||| +||++.+++++|+++|++||.|.+|.|+.+ ++||+|.+.++ |++|+..||+..+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~----A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEE----SKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHH----HHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHH----HHHHHHHhCCCEE
Confidence 45788999 779999999999999999999999999865 88999999999 9999999999765
No 78
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=97.51 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=57.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEE-EecCcc----eeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKRF----WFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v-~i~~d~----~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+| .|++|. +||+|.+.++ |.+|+..||+..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~----a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQ----ARQALDKLNGFQLE 80 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHH----HHHHHHHHTTCBCS
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 3457899999999999999999999999999999 588774 8999999999 99999999997664
No 79
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=2.1e-15 Score=100.41 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=57.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----a~~A~~~l~g~~~ 92 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS----AQAAIQSMNGFQI 92 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHH----HHHHHHHHTTCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHH----HHHHHHHcCCCEE
Confidence 456789999999999999999999999999999999876 57999999999 9999999998654
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=100.91 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=58.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~----A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD----ADRAREKLHGTVVE 95 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHH----HHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHH----HHHHHHHcCCCEEC
Confidence 456799999999999999999999999999999999955 78999999999 99999999987543
No 81
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.60 E-value=2.1e-15 Score=102.65 Aligned_cols=64 Identities=22% Similarity=0.156 Sum_probs=58.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..+.++|||+|||+.+++++|+++|++||+|.+|.|++| ++||+|.+.++ |++||..||+..++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~----A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD----AKEAKERANGMELD 114 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHH----HHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 456799999999999999999999999999999999865 68999999999 99999999987654
No 82
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=95.59 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=56.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC--cceeEEecCCcccHHHHHHHHHHH-hHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RFWFCHLCGRSCSRSCFSKVSRNL-WTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~--d~~fv~f~~~~~~~~~a~~Ai~~l-~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++ .++||+|.+.++ |++|+..| |+..+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~----A~~a~~~l~~~~~~ 74 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQA----AEVAAEKSFNKLIV 74 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHH----HHHHHHTTTTTCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHH----HHHHHHHhcCCeeE
Confidence 45679999999999999999999999999999999997 478999999999 99999998 76543
No 83
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.60 E-value=1.3e-15 Score=98.26 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=56.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 101 ~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
.++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|++.||+..++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLES----SASAVRNLNGYQLG 70 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHH----HHHHHHHHTTCEET
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHH----HHHHHHHhCCCeEC
Confidence 589999999999999999999999999999999865 67999999999 99999999986543
No 84
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=101.02 Aligned_cols=60 Identities=30% Similarity=0.509 Sum_probs=56.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhH
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWT 161 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~ 161 (171)
....++|||+|||+.+++++|+++|++||.|++|.|++| ++||+|.+.++ |++||..||+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~Ai~~~~~ 81 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAA----AERACKDPNP 81 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHH----HHHHHTCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHH----HHHHHHhCCC
Confidence 556899999999999999999999999999999999976 68999999999 9999999886
No 85
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.60 E-value=3.6e-15 Score=98.40 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=58.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|+++ ++||.|.+.++ |++|++.||+..+.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~----A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSEC----AKKALEQLNGFELA 94 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHH----HHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH----HHHHHHHcCCCEEC
Confidence 446789999999999999999999999999999999865 78999999999 99999999987654
No 86
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=3.1e-15 Score=99.97 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=57.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+++++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|++.||+..+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~----A~~A~~~l~g~~~ 107 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDS----AQVAIKAMNGFQV 107 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHH----HHHHHHHCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHH----HHHHHHHcCCCEE
Confidence 456799999999999999999999999999999999866 67999999999 9999999988654
No 87
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=96.09 Aligned_cols=62 Identities=18% Similarity=0.334 Sum_probs=56.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC---------cceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK---------RFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~---------d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..++|||+|||+++++++|+++|++||.|.++.|++ .++||+|.+.++ |++|+..||+..+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDE----AEKALKHMDGGQID 73 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHH----HHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHH----HHHHHHHcCCCeEC
Confidence 468999999999999999999999999999999964 467999999999 99999999987653
No 88
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=99.92 Aligned_cols=62 Identities=13% Similarity=0.281 Sum_probs=55.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+++|+++|+++|++||+|.+|.|++| ++||+|.+.++ |.+||. ||+..+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~----a~~Ai~-~~~~~~ 76 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIES----AKKFVE-TPGQKY 76 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHH----HHHHHT-SSCCCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHH----HHHHHH-cCCCEE
Confidence 345789999999999999999999999999999999864 68999999999 999998 776554
No 89
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=99.20 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=55.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHh
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLW 160 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~ 160 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----A~~A~~~~~ 78 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA----AQKCLAAAS 78 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHH----HHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHH----HHHHHHHhc
Confidence 456789999999999999999999999999999999865 68999999999 999999998
No 90
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=1.4e-15 Score=95.36 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=55.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 102 ~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
.+|||+|||+.+++++|+++|++||+|.++.|++| ++||+|.+.++ |++|+..||+..+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~----a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD----AQNAMDSMQGQDLN 69 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHH----HHHHHHHHTTCEET
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHH----HHHHHHHhcCCeeC
Confidence 68999999999999999999999999999999866 67999999999 99999999987543
No 91
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=1.7e-15 Score=99.57 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=58.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..+.++|||+|||+.+++++|+++|++||.|.+|.|+++ ++||+|.+.++ |++|++.||+..+.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKAD----ALKAMKQYNGVPLD 96 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHH----HHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHH----HHHHHHHhCCCEeC
Confidence 456899999999999999999999999999999999955 78999999999 99999999987543
No 92
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=7.9e-16 Score=96.29 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=55.4
Q ss_pred CceEEEeCCCCCC------CHHHHHHHhhcccceEEEEecC------cceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 101 GKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPK------RFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 101 ~~~lfV~nLp~~~------te~~L~~~F~~fG~v~~v~i~~------d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
+++|||+|||+.+ ++++|+++|++||+|.+|.|++ .++||+|.+.++ |++|+..||+..+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~----A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAH----AVDAVKNADGYKLD 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHH----HHHHHTTSSSCCCS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHH----HHHHHHHhcCcccC
Confidence 3789999999999 7799999999999999999984 478999999999 99999999987654
No 93
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=97.11 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=58.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEE--------EEecCc--------ceeEEecCCcccHHHHHHHHHHHhH
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWT 161 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~--------v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~ 161 (171)
....++|||+|||+.+++++|+++|++||.|.+ +.|++| ++||+|.+.++ |++|++.||+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~----a~~Ai~~l~g 85 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS----AKAAIDWFDG 85 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHH----HHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHH----HHHHHHHhCC
Confidence 556899999999999999999999999999999 999866 67999999999 9999999998
Q ss_pred hCCC
Q 030822 162 AGCN 165 (171)
Q Consensus 162 ~~~~ 165 (171)
..+.
T Consensus 86 ~~~~ 89 (99)
T 2la6_A 86 KEFS 89 (99)
T ss_dssp CBSS
T ss_pred CEeC
Confidence 7654
No 94
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.9e-15 Score=98.26 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKE----AQAAMEGLNGQDLM 91 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHH----HHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHH----HHHHHHHhcCCEEC
Confidence 445789999999999999999999999999999999855 67999999999 99999999987654
No 95
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=3e-15 Score=101.19 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=58.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKE----AQAAMEGLNGQDLM 90 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHH----HHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHH----HHHHHHHhCCCeeC
Confidence 456789999999999999999999999999999999855 78999999999 99999999997764
No 96
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.8e-16 Score=99.79 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=57.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEE-EecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v-~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.+.++|||+|||+.+++++|+++|++||.|.++ .|++| ++||+|.+.++ |++|+..||+..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~----A~~A~~~l~g~~~ 73 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDA----SDAAIEAMNGQYL 73 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHH----HHHHHHTTTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHH----HHHHHHHcCCCEE
Confidence 357999999999999999999999999999999 99876 78999999999 9999999998754
No 97
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=98.38 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=57.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhc-ccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSR-FGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAG 163 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~-fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~ 163 (171)
..+.++|||+|||+.+++++|+++|++ ||.|.+|.|++| ++||.|.+.++ |++|+..||+..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~----a~~A~~~l~g~~ 75 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELE----QKRALTECQGAV 75 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHH----HHHHHHHTTTCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH----HHHHHHHccCCc
Confidence 446799999999999999999999999 999999999865 78999999999 999999999876
No 98
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=98.27 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-----------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-----------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-----------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
.+.++|||+|||+.+++++|+++|++||+|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQ----AQKALKQLQGHTVD 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHH----HHHHHHHSTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHH----HHHHHHHhCCCeeC
Confidence 35789999999999999999999999999999999853 67899999999 99999999987543
No 99
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=98.75 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=55.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc---ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 102 ~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d---~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
++|||+|||+.+++++|+++|++||+|.+|.|+++ ++||+|.+.++ |++|+..||+..++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 63 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD----AEDAVRGLDGKVIC 63 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHH----HHHHHHHHHHSCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHH----HHHHHHHHCCCeEC
Confidence 47999999999999999999999999999999866 88999999999 99999999997654
No 100
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.59 E-value=8.2e-16 Score=98.14 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=53.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhccc--ceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 102 KKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 102 ~~lfV~nLp~~~te~~L~~~F~~fG--~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
.+|||+|||+++++++|+++|++|| .|.++.|++| ++||+|.+.++ |++|++.||+..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~----a~~Ai~~l~g~~~~ 71 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEAS----SKKLMDLLPKRELH 71 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHH----HHHHHHHGGGSCSS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHH----HHHHHHHcCCCeeC
Confidence 4799999999999999999999999 9999999876 58999999999 99999999997654
No 101
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=2.6e-15 Score=99.16 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=57.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQ----ALAAKEALNGAEI 93 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHH----HHHHHHHcCCCEE
Confidence 456789999999999999999999999999999999865 68999999999 9999999998754
No 102
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=97.74 Aligned_cols=62 Identities=31% Similarity=0.487 Sum_probs=56.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||+|.+|.|++| ++||+|.+.++ |++||.. |+..+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~----a~~a~~~-~~~~~ 82 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC----VGTVLAS-RPHTL 82 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTH----HHHHHHH-CSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHH----HHHHHHh-CCCeE
Confidence 456799999999999999999999999999999999976 68999999999 9999988 76543
No 103
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=98.70 Aligned_cols=64 Identities=13% Similarity=0.247 Sum_probs=57.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceE-EEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL-DVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~-~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||+|. +|.|++| ++||+|.+.++ |++|+..||+..+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 78 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLAT----AEKCLHKINGKPLP 78 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHH----HHHHHHTTTTSEES
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHH----HHHHHHHHcCCccC
Confidence 34579999999999999999999999999999 9999876 57899999999 99999999986543
No 104
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.58 E-value=7.1e-16 Score=102.89 Aligned_cols=75 Identities=16% Similarity=0.327 Sum_probs=39.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhcc
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 78 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (171)
|++|+ +++||||||+|.+.++|++||+. ++.|+|+.|.|.++.++........
T Consensus 37 i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~----------------------- 91 (115)
T 4f25_A 37 VVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG----------------------- 91 (115)
T ss_dssp EEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-----------------------------
T ss_pred EeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccc-----------------------
Confidence 35664 45899999999999999999984 8999999999999876543221100
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 030822 79 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAED 117 (171)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~ 117 (171)
......++|||+|||+++|++.
T Consensus 92 -----------------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 92 -----------------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ---------------------------------------
T ss_pred -----------------cccCCCCceEeCCCCCCccccc
Confidence 0023457899999999999864
No 105
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=2.1e-15 Score=106.67 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=57.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|..|.|+++ ++||+|.+.++ |.+||..||+..+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----A~~Ai~~l~g~~~ 139 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQ----ALAAKEALNGAEI 139 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHH----HHHHHHHhCCCEE
Confidence 445789999999999999999999999999999999865 78999999999 9999999998654
No 106
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=9.7e-16 Score=99.77 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=57.0
Q ss_pred CCceEEEeCCCC------CCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 100 IGKKIFVGRLPQ------EATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 100 ~~~~lfV~nLp~------~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..++|||+|||+ .+++++|+++|++||+|.+|.|++| ++||+|.+.++ |++||+.||+..+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~----A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMND----AKKIIKSFHGKRLD 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHH----HHHHHHHHTTCBSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHH----HHHHHHHhCCcccC
Confidence 468999999999 9999999999999999999999855 67999999999 99999999987654
No 107
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.9e-15 Score=97.16 Aligned_cols=64 Identities=11% Similarity=0.245 Sum_probs=59.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||.|.+.++ |++|+..||+..+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEK----CEAVIGHFNGKFIK 92 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHH----HHHHHHHHBTCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHH----HHHHHHHhCCCEEc
Confidence 345789999999999999999999999999999999876 78999999999 99999999998763
No 108
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.5e-15 Score=97.62 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=55.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc---------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d---------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
..+.++|||+|||+.+++++|+++|++|| |.+|.|++| ++||+|.+.++ |++|| .||+..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~----a~~A~-~l~g~~~ 81 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDS----LLSAL-SLNEESL 81 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHH----HHHHH-GGGTCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHH----HHHHH-hcCCCEe
Confidence 44579999999999999999999999999 999999865 68999999999 99999 9998654
No 109
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.58 E-value=4.7e-16 Score=99.59 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=51.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccc-ceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHh
Q 030822 101 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLW 160 (171)
Q Consensus 101 ~~~lfV~nLp~~~te~~L~~~F~~fG-~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~ 160 (171)
+++|||+|||+++|+++|+++|++|| +|.+|+|++| ++||+|.+.++ |++|++.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~----A~~Ai~~~~ 65 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQD----ATRWMEANQ 65 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHH----HHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHH----HHHHHHhcC
Confidence 36899999999999999999999999 8999999876 57899999999 999998773
No 110
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=5.1e-15 Score=98.50 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=58.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-----ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-----FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-----~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|+++ ++||+|.+.++ |..|+..||+..+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFD----AKNAVDHLSGFNVS 73 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHH----HHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHH----HHHHHHHcCCCEEC
Confidence 345789999999999999999999999999999999764 78999999999 99999999997664
No 111
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.58 E-value=5e-15 Score=97.15 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=56.7
Q ss_pred CCCceEEEeCCCCCC------CHHHHHHHhhcccceEEEEecC------cceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPK------RFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~------te~~L~~~F~~fG~v~~v~i~~------d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
...++|||+|||+.+ ++++|+++|++||.|.+|.|++ .++||+|.+.++ |.+|+..||+..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~----A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAH----AVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSH----HHHHHHHCSSEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHH----HHHHHHHhCCcccC
Confidence 346899999999999 7899999999999999999983 588999999999 99999999987553
No 112
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3e-15 Score=98.77 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=57.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|+++ ++||+|.+.++ |++|+..||+..+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~----a~~A~~~l~g~~~ 86 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHES----AAHAIVSVNGTTI 86 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHH----HHHHHHHcCCCEE
Confidence 446789999999999999999999999999999999964 78999999999 9999999998654
No 113
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=6.8e-15 Score=100.96 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=57.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||+|.++.|++| ++||+|.+.++ |++|++.||+..+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~ 130 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED----AAAAIDNMNESEL 130 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHH----HHHHHHHSTEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHH----HHHHHHHhCCCEE
Confidence 456899999999999999999999999999999999866 68999999999 9999999998654
No 114
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=3e-15 Score=97.37 Aligned_cols=64 Identities=23% Similarity=0.211 Sum_probs=57.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEec--CcceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~--~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.++.|+ +.++||.|.+.++ |++|+..||+..++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~----A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQ----AAVCIVALANFPFQ 89 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHH----HHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHH----HHHHHHHhCCCeEC
Confidence 3457899999999999999999999999999999997 4578999999999 99999999987543
No 115
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=4.4e-15 Score=95.80 Aligned_cols=63 Identities=25% Similarity=0.410 Sum_probs=57.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHhhcccceEEEEec-----CcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVP-----KRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~----~~F~~fG~v~~v~i~-----~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.++.++|||+|||+.+++++|+ ++|++||.|.+|.|+ +.++||+|.+.++ |++|+..||+..+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSS----ATNALRSMQGFPF 76 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHH----HHHHHHHhCCCEE
Confidence 4567999999999999999999 999999999999998 4689999999999 9999999998654
No 116
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.7e-15 Score=95.10 Aligned_cols=63 Identities=21% Similarity=0.373 Sum_probs=56.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEec----CcceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP----KRFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~----~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|. +.++ +.++||.|.+.++ |++|+..||+..++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAA----AQQAVSCLQGLRLG 82 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHH----HHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 44578999999999999999999999999997 6666 4589999999999 99999999988664
No 117
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.5e-15 Score=98.46 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=58.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceE--------EEEecCc--------ceeEEecCCcccHHHHHHHHHHHhH
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWT 161 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~--------~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~ 161 (171)
....++|||+|||+.+++++|+++|++||.|. .|.|++| ++||+|.+.++ |++||..||+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~----A~~Ai~~l~g 87 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPT----AKAAVEWFDG 87 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHH----HHHHHHHHTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHH----HHHHHHHcCC
Confidence 45679999999999999999999999999999 6999876 68999999999 9999999998
Q ss_pred hCCC
Q 030822 162 AGCN 165 (171)
Q Consensus 162 ~~~~ 165 (171)
..++
T Consensus 88 ~~~~ 91 (113)
T 2cpe_A 88 KDFQ 91 (113)
T ss_dssp CEET
T ss_pred CccC
Confidence 7543
No 118
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.7e-15 Score=99.40 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=57.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHH---HHhhcccceEEEEecCc-----------ceeEEecCCcccHHHHHHHHHHHhHhC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLR---RYFSRFGRILDVYVPKR-----------FWFCHLCGRSCSRSCFSKVSRNLWTAG 163 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~---~~F~~fG~v~~v~i~~d-----------~~fv~f~~~~~~~~~a~~Ai~~l~~~~ 163 (171)
....++|||+|||+.+++++|+ ++|++||+|.+|.|++| ++||+|.+.++ |++||+.||+..
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~----A~~Ai~~lng~~ 87 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED----ALRAIQCVNNVV 87 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHH----HHHHHHHHTTEE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHH----HHHHHHHhCCCE
Confidence 4457899999999999999999 99999999999999865 67899999999 999999999875
Q ss_pred C
Q 030822 164 C 164 (171)
Q Consensus 164 ~ 164 (171)
+
T Consensus 88 ~ 88 (111)
T 2cpi_A 88 V 88 (111)
T ss_dssp E
T ss_pred E
Confidence 4
No 119
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.1e-15 Score=96.00 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=54.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEE-EEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~-v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.+ |.|++| ++||+|.++++ |++||.. |+..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~----a~~A~~~-~~~~~ 81 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI----AEKALKK-HKERI 81 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHH----HHHHHTT-TTCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHH----HHHHHHh-Ccchh
Confidence 456799999999999999999999999999998 888754 68999999999 9999987 76554
No 120
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.56 E-value=4.7e-15 Score=101.06 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=55.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEE--EEecCc--------ceeEEecCCcccHHHHHHHHHHHhHh
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTA 162 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~--v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~ 162 (171)
....++|||+|||+.+|+++|+++|++||.|.. |+|++| ++||+|.+. + |.+|+..||+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~----a~~Ai~~l~g~ 89 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-E----AAQLLQILQAL 89 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-H----HHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-H----HHHHHHHhcCC
Confidence 345789999999999999999999999999977 999876 579999999 9 99999999987
No 121
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=99.56 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=57.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
...++|||+|||+++++++|+++|++||.|++|.|++| ++||+|.+.++ |++|++.||+..++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~----A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD----AKNAAKDMNGKSLH 74 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHH----HHHHHHHCSSCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 35689999999999999999999999999999999974 68999999999 99999999987664
No 122
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=96.83 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=56.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
...++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|| .||+..++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----a~~A~-~l~g~~~~ 92 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQS----VPLAI-GLTGQRLL 92 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGG----HHHHH-HHTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHH----HHHHH-HcCCCEeC
Confidence 34689999999999999999999999999999999854 68999999999 99999 99987543
No 123
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.55 E-value=4.3e-15 Score=94.28 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=55.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..++|||+|||+.+++++|+++|++||.|.++.|++| ++||+|.+.++ |++|+ .||+..++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~a~-~~~g~~~~ 73 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKES----VRTSL-ALDESLFR 73 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHH----HHHHG-GGTTCEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHH----HHHHH-hcCCCEEC
Confidence 3589999999999999999999999999999999876 68999999999 99999 99887543
No 124
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.55 E-value=1.7e-14 Score=97.24 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=58.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~----A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRAD----ALKAMKQYKGVPLD 102 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHH----HHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHH----HHHHHHHcCCCEEC
Confidence 456799999999999999999999999999999999864 78999999999 99999999987654
No 125
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=98.95 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=56.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHhhcccceEEEEecC-----cceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPK-----RFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~----~~F~~fG~v~~v~i~~-----d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
..+.++|||+|||+.+++++|+ ++|++||.|++|.+.+ .++||+|.+.++ |..|+..||+..+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~----A~~Ai~~lng~~l 97 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQES----AQAFVEAFQGYPF 97 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHH----HHHHHHHSTTCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHH----HHHHHHHHCCCEe
Confidence 3457899999999999999876 6999999999999974 589999999999 9999999998765
No 126
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=7.1e-15 Score=95.98 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=55.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++|| |.+|.|++| ++||+|.+.++ |++|+ .||+..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~----a~~A~-~l~g~~~ 80 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDS----LKEAL-TYDGALL 80 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHH----HHHHG-GGTTCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHH----HHHHH-hhCCCeE
Confidence 45679999999999999999999999997 999999966 67999999999 99999 8988654
No 127
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-15 Score=98.74 Aligned_cols=63 Identities=29% Similarity=0.454 Sum_probs=57.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
...++|||+|||+.+++++|+++|++||.|.+|.|+++ ++||+|.+.++ |++|++.||+..++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET----ALSAMRNLNGREFS 76 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHH----HHHHHHHSSSBSCS
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHH----HHHHHHHhCCCeeC
Confidence 35689999999999999999999999999999999855 68999999999 99999999987664
No 128
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=100.04 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=58.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|+.||.|++|.|++| ++||+|.+.++ |++|+..||+..++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSS----AQQAIAGLNGFNIL 110 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHH----HHHHHHHTTTEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 456799999999999999999999999999999999865 68999999999 99999999987654
No 129
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=95.09 Aligned_cols=58 Identities=33% Similarity=0.445 Sum_probs=53.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHH
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNL 159 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l 159 (171)
....++|||+|||+.+++++|+++|++||+|.+|.|++| ++||+|.+.++ |++|+.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----a~~A~~~~ 77 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET----QVKVMSQR 77 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHH----HHHHHHSC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHH----HHHHHHcC
Confidence 456789999999999999999999999999999999876 68999999999 99999863
No 130
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.8e-15 Score=96.12 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=53.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+++|+++|+++|++||. ++|.|++| ++||+|.+.++ |++|| .||+..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~----a~~Al-~~~~~~~ 79 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHED----AVAAM-AKDKANM 79 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHH----HHHHH-TTSSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHH----HHHHH-HhCCCeE
Confidence 456789999999999999999999999995 59999866 68999999999 99999 4776544
No 131
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.1e-15 Score=91.88 Aligned_cols=58 Identities=29% Similarity=0.492 Sum_probs=53.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 102 ~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
++|||+|||+++++++|+++|++||+|.++.|++| ++||.|.+.++ |++|+..|| ..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAG----VDKVLAQSR-HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTH----HHHHHHTTT-CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHH----HHHHHHhCC-Ccc
Confidence 47999999999999999999999999999999875 67899999999 999999988 443
No 132
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=5e-15 Score=103.94 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=55.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccc--ceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG--~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
..++|||+|||+.+++++|+++|++|| .|.+|.|++| ++||+|.+.++ |++||..||+..+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~----A~~Ai~~lng~~~ 124 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENS----VHKLLELLPGKVL 124 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHH----HHHHHHHSTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHH----HHHHHHHcCCCEE
Confidence 468999999999999999999999999 9999999876 68999999999 9999999998654
No 133
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.54 E-value=1.1e-14 Score=92.04 Aligned_cols=57 Identities=28% Similarity=0.535 Sum_probs=52.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHH
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRN 158 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~ 158 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|++.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----a~~A~~~ 72 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS----VEKVLDQ 72 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHH----HHHHHHS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHH----HHHHHHh
Confidence 456799999999999999999999999999999999865 68999999999 9999965
No 134
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.1e-15 Score=95.33 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=55.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccc-eEEEEec-CcceeEEecCCcccHHHHHHHHHHHhH-hCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVP-KRFWFCHLCGRSCSRSCFSKVSRNLWT-AGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~-v~~v~i~-~d~~fv~f~~~~~~~~~a~~Ai~~l~~-~~~ 164 (171)
....++|||+|||+.+++++|+++|++||. |..+.+. +.++||+|.+.++ |++|+..||+ ..+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNW----AIRAIETLSGKVEL 70 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHH----HHHHHHHHTTTCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHH----HHHHHHHccCCeeE
Confidence 345789999999999999999999999999 6666654 6689999999999 9999999998 543
No 135
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.2e-15 Score=96.70 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=55.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.++.++.+ ++||+|.+.++ |++|++.||+..+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~----a~~Ai~~l~g~~~ 82 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE----ATAAVIDLNDRPI 82 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHH----HHHHHHHTTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHH----HHHHHHHhCCCee
Confidence 445789999999999999999999999999988777643 68999999999 9999999998644
No 136
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.53 E-value=2.1e-15 Score=97.00 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=54.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
+..++|||+|||+.+++++|+++|++||.|..+.++.+ ++||+|.+.++ |++|++.||+..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~----a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE----ATAAVIDLNDRPI 82 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHH----HHHHHHHhCCCeE
Confidence 44689999999999999999999999999998887753 68999999999 9999999998654
No 137
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=6e-15 Score=98.85 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=55.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccc---eEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~---v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+++|+++|+++|++||. |..|+|++| ++||+|.+.++ |++||+ ||+..+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~----a~~Al~-~~g~~~ 85 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDD----VKLALK-KDRESM 85 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHH----HHHHGG-GTTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHH----HHHHHh-cCCCeE
Confidence 445789999999999999999999999999 899999865 68999999999 999999 887654
No 138
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=1.6e-14 Score=97.43 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=54.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC--cc-eeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK--RF-WFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 102 ~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~--d~-~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
-.|||+||++.+++++|+++|++||.|.+|.|+. .+ +||+|.+.++ |..|+..||+..+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~----A~~A~~~LnG~~i 87 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLC----AQKAKAALNGADI 87 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHH----HHHHHHHHTTCCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHH----HHHHHHHhCCCEe
Confidence 4578999999999999999999999999999875 34 8999999999 9999999999876
No 139
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.53 E-value=1e-14 Score=107.10 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=55.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.+.++|||+|||+++|+++|+++|++||+|++|+|++| ++||+|.+.++ |++|+..||+..+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~----A~~Ai~~~~~~~~ 82 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD----AERALDTMNFDVI 82 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHH----HHHHHHHhhhhhc
Confidence 35689999999999999999999999999999999976 57999999999 9999999987654
No 140
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=2.7e-15 Score=103.27 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=53.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+++|+++|+++|++|| |++|.|++| ++||+|.+.++ |++|| .||+..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~----A~~Al-~~~g~~l 110 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEE----AVAAM-SKDRANM 110 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHH----HHHHT-TCCSCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHH----HHHHH-hhCCCEE
Confidence 34578999999999999999999999999 779999865 68999999999 99999 7776544
No 141
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.52 E-value=1.3e-14 Score=101.68 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=58.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||+|++|.|++| ++||+|.+.++ |++||..||+..++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD----AENAMRYINGTRLD 107 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH----HHHHHHHTTTSEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 346799999999999999999999999999999999865 67999999999 99999999987553
No 142
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=1.6e-14 Score=92.05 Aligned_cols=50 Identities=36% Similarity=0.830 Sum_probs=44.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC---cceeEEecCCcc
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK---RFWFCHLCGRSC 147 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~---d~~fv~f~~~~~ 147 (171)
..+.++|||+|||+++|+++|+++|++||.|.+|.|++ .++||+|.++++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~ 60 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKV 60 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHH
Confidence 45689999999999999999999999999999999995 489999999988
No 143
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.52 E-value=6.9e-15 Score=95.63 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=53.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc---------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d---------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+++++++|+++|++|| |.+|.|++| ++||+|.+.++ |++|+ .||+..++
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~----a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDS----LLSAL-SLNEESLG 86 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHH----HHHHH-HTTTCCBT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHH----HHHHH-hcCCCEEC
Confidence 45679999999999999999999999999 999999865 67999999999 99999 99987654
No 144
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.52 E-value=5.2e-15 Score=91.03 Aligned_cols=58 Identities=33% Similarity=0.536 Sum_probs=52.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 103 ~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
+|||+|||+++++++|+++|++||+|.+|.|+++ ++||+|.+.++ |++|+. ||+..++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI----VEKVCE-IHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHH----HHHHHS-SSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHH----HHHHHH-CCCCEEC
Confidence 5999999999999999999999999999999865 57899999999 999987 8776654
No 145
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.52 E-value=1.5e-14 Score=95.61 Aligned_cols=59 Identities=31% Similarity=0.521 Sum_probs=51.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHh
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLW 160 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~ 160 (171)
....++|||+|||+++++++|+++|++||.|.+|.|++| ++||.|.+.++ |++|+..++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~----A~~Ai~~~~ 88 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAG----VDKVLAQSR 88 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHH----HHHHHHSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHH----HHHHHHHCC
Confidence 446799999999999999999999999999999999876 68999999999 999998764
No 146
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=92.73 Aligned_cols=61 Identities=5% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+++++++|+++|++| .|.+|.|++| ++||.|.+.++ |.+|+. ||+..+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~----a~~A~~-~~g~~~ 74 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEE----VKQALK-CNREYM 74 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHH----HHHHHH-SCSEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHH----HHHHHH-hCCcee
Confidence 4467999999999999999999999999 9999999876 78999999999 999999 988654
No 147
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.51 E-value=1.6e-14 Score=101.59 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=56.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc----ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR----FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d----~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....+|||+||++.+|+++|+++|++||.|.+|.|..+ ++||+|.+.++ |+.|++.||+..+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~----A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS----AQHAKLSLDGQNI 109 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHH----HHHHHHHSTTBCS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHH----HHHHHHHhCCCEe
Confidence 34578999999999999999999999999999999733 68999999999 9999999999876
No 148
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=92.31 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=53.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc---ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d---~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
...++|||+|||+.+++++|+++|++||.|.+|.+-++ ++||+|.+.++ |++|+. ||+..+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~----a~~ai~-l~g~~~ 69 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGA----REAVLS-QSQHSL 69 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHH----HHHHHT-CSCCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHH----HHHHHh-cCCeEE
Confidence 34689999999999999999999999999999843332 79999999999 999999 987654
No 149
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=1.6e-14 Score=97.99 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=55.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc---c-eeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---F-WFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d---~-~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.--+|||+||++.+|+++|+++|++||+|.+|.|+.+ + +||+|.+.++ |++|++.|||..+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~----A~~Ai~~LnG~~i 91 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS----AQHAKLSLDGQNI 91 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHH----HHHHHHHHTTCEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHH----HHHHHHHcCCCee
Confidence 4567899999999999999999999999999999854 3 8999999999 9999999999765
No 150
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.51 E-value=2.4e-14 Score=104.73 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=56.4
Q ss_pred CCceEEEeCCC-CCCCHHHHHHHhhcccceEEEEecCc---ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKKIFVGRLP-QEATAEDLRRYFSRFGRILDVYVPKR---FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~lfV~nLp-~~~te~~L~~~F~~fG~v~~v~i~~d---~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.+++|||+||| +.+++++|+++|++||.|.+|+|+++ ++||+|.+.++ |+.||+.||+..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~----A~~Ai~~lng~~~ 67 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA----VDRAITHLNNNFM 67 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHH----HHHHHHHhCCCEE
Confidence 46899999999 89999999999999999999999864 79999999999 9999999998654
No 151
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.50 E-value=8.9e-15 Score=100.37 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=56.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccc---eEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~---v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+++|+++|+++|++||. |.+|.|++| ++||+|.+.++ |++||+ ||+..++
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~----a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDD----VKMALK-KDRESMG 113 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHH----HHHHHT-TTEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHH----HHHHHh-cCCCEEC
Confidence 445789999999999999999999999999 899999866 68999999999 999999 9886553
No 152
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.50 E-value=1.8e-14 Score=107.12 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=56.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhccc--ceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG--~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..++|||+|||+.+|+++|+++|++|| .|++|+|++| ++||+|.+.++ |++||+.||+..+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~----a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEAS----SKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTH----HHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHH----HHHHHHHcCCCeEC
Confidence 467999999999999999999999999 9999999977 58999999999 99999999987654
No 153
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.7e-14 Score=94.97 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=53.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccc-eEEEEec-C--------cceeEEecCCcccHHHHHHHHHHHh
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVP-K--------RFWFCHLCGRSCSRSCFSKVSRNLW 160 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~-v~~v~i~-~--------d~~fv~f~~~~~~~~~a~~Ai~~l~ 160 (171)
...++|||+|||+.+++++|+++|++||. |.+|.|+ . .++||+|.+.++ |++|+..||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~----A~~A~~~l~ 73 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRA----AAMARRKLM 73 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHH----HHHHHTTTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHH----HHHHHHHhh
Confidence 45789999999999999999999999999 9999998 2 378999999999 999999996
No 154
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-14 Score=95.72 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=53.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....+|||+|||+++++++|+++|++| .|.+|.|++| ++||+|.+.++ |++|| .||+..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~----a~~Al-~~~~~~~ 80 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQD----TFEAL-KRNRMLM 80 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHH----HHHHH-HTTTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHH----HHHHH-hcCCCeE
Confidence 346899999999999999999999999 8999999865 68999999999 99999 6887543
No 155
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.7e-14 Score=92.79 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.| .|+++ ++||+|.+.++ |++|+..||+..++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~----A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFED----AKEALNSCNKREIE 79 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHH----HHHHHHHTSSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHH----HHHHHHHhCCCEeC
Confidence 4568999999999999999999999999988 45443 78999999999 99999999986543
No 156
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.5e-14 Score=89.13 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=51.7
Q ss_pred CCce-EEEeCCCCCCCHHH----HHHHhhcc-cceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKK-IFVGRLPQEATAED----LRRYFSRF-GRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~-lfV~nLp~~~te~~----L~~~F~~f-G~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
+..+ |||+|||+.+++++ |+++|++| |+|.+| ...++||.|.+.++ |.+|++.||+..+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tgG~AfV~F~~~es----A~~A~~~l~G~~l 71 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TGCSAILRFINQDS----AERAQKRMENEDV 71 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CTTCEEEEESSHHH----HHHHHHHHTTCCS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ecCEEEEEECCHHH----HHHHHHHhcCCcc
Confidence 3444 99999999999987 55899999 599988 45999999999999 9999999999765
No 157
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.6e-14 Score=90.38 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=55.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEec--CcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~--~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|| .+++++|+++|++||.|.+|.|. +.++||+|.+.++ |++||..||+..+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~----a~~Ai~~l~g~~~ 74 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMES----ADQAVAELNGTQV 74 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHH----HHHHHHHTTTEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHH----HHHHHHHhCCCeE
Confidence 446789999996 89999999999999999999997 4588999999999 9999999998754
No 158
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=95.00 Aligned_cols=58 Identities=24% Similarity=0.465 Sum_probs=51.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-----------ceeEEecCCcccHHHHHHHHHHHhH
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-----------FWFCHLCGRSCSRSCFSKVSRNLWT 161 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-----------~~fv~f~~~~~~~~~a~~Ai~~l~~ 161 (171)
...++|||+|||+.+++++|+++|++||+|. +.++.+ ++||+|.+.++ |++||+.||.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~----a~~Ai~~~~~ 74 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESS----VQALIDACLE 74 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHH----HHHHHHHSEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHH----HHHHHHhhhh
Confidence 4578999999999999999999999999999 777643 67999999999 9999999843
No 159
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.49 E-value=1.3e-14 Score=97.75 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=55.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
..++|||+|||+.+++++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+ .||+..+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~A~-~l~g~~~ 102 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNS----VDAAV-AMDETVF 102 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHH----HHHHH-TTTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHH----HHHHH-hcCCCeE
Confidence 4689999999999999999999999999999999865 68999999999 99999 8988654
No 160
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-14 Score=94.80 Aligned_cols=63 Identities=14% Similarity=-0.052 Sum_probs=56.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccc---eEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~---v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+++|+++|+++|++||. |.+|.|++| ++||+|.+.++ |++||. ||+..+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~----a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQD----VQKALE-KHRMYMG 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHH----HHHHHT-TTTCCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHH----HHHHHH-hCcceeC
Confidence 446789999999999999999999999998 999999866 68999999999 999999 8886654
No 161
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.2e-14 Score=96.82 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=54.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEec--------CcceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--------KRFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~--------~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|.++.++ +.++||+|.+.++ |++||. ||+..+.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~----a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD----YKAALC-RHKQYMG 92 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHH----HHHHHT-SCSBCST
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHH----HHHHHH-hCCCeEC
Confidence 4457899999999999999999999999999885444 2378999999999 999999 9887654
No 162
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.48 E-value=2.8e-14 Score=90.13 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=55.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcc----c-------ceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~f----G-------~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
...++|||+|||+.+++++|+++|++| | .|.++.++++ ++||+|.+.++ |++|+ .||+..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~----a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE----TTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHH----HHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHH----HHHHH-hcCCCEE
Confidence 357899999999999999999999999 8 9999999965 77899999999 99999 9998754
No 163
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.47 E-value=2.2e-14 Score=93.35 Aligned_cols=63 Identities=17% Similarity=0.409 Sum_probs=55.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHH---HHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSR---NLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~---~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|.+|.|++| ++||.|.+.++ |++|+. .|++..+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~----a~~Ai~~~~~~~g~~l 78 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD----VQKIVESQINFHGKKL 78 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCC----HHHHTTCCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH----HHHHHhCCCeECCEEE
Confidence 345689999999999999999999999999999999874 78999999999 999998 5555443
No 164
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.5e-14 Score=95.18 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=53.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccce-EEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAG 163 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v-~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~ 163 (171)
....++|||+|||+.+++++|+++|++||.| ..|.|++| ++||+|.+.++ |++||.. |+..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~----a~~Al~~-~~~~ 80 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDD----ARKSERL-HRKK 80 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHH----HHHHGGG-CSEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHH----HHHHHHh-CCCc
Confidence 3457899999999999999999999999999 88999754 78999999999 9999876 6643
No 165
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=2.9e-14 Score=92.67 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=53.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
...++|||+|||+++++++|+++|++||.|.. .++.| ++||+|.+.++ |++|++ ||+..+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~----a~~A~~-l~g~~~~ 83 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAED----LEKALE-LTGLKVF 83 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHH----HHHHHH-GGGCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHH----HHHHHh-cCCcEEC
Confidence 35789999999999999999999999999888 55543 78999999999 999998 9987654
No 166
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=7.6e-14 Score=99.85 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=58.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.|++|.|+.| ++||+|.+.++ |++|++.||+..++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~----A~~Ai~~lng~~l~ 155 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRAD----ALKAMKQYKGVPLD 155 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHH----HHHHHHHSTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHH----HHHHHHHhCCCEEC
Confidence 456799999999999999999999999999999999865 68999999999 99999999987654
No 167
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.47 E-value=3.1e-14 Score=90.35 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=54.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEec--CcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~--~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
..++|||+|||+.+++++|+++|++| .|.++.|. +.++||+|.+.++ |++|++.||+..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~----a~~Ai~~l~g~~~ 65 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQ----AQNAIQMFHQYSF 65 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHH----HHHHHHHHTTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHH----HHHHHHHhCCCeE
Confidence 46899999999999999999999999 99999986 4578999999999 9999999998654
No 168
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=91.77 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=56.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccce----EEEEec----CcceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRI----LDVYVP----KRFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v----~~v~i~----~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..+.++|||+|||+.+++++|+++|++||.| ..+.++ +.++||+|.+.++ |++|+..||+..+.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~----a~~Ai~~l~g~~~~ 93 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEI----AWQALHLVNGYKLY 93 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHH----HHHHHHHSTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHH----HHHHHHHhCCCEeC
Confidence 3457899999999999999999999999999 566665 3588999999999 99999999987653
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.46 E-value=9.4e-14 Score=98.08 Aligned_cols=62 Identities=23% Similarity=0.431 Sum_probs=56.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc----------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR----------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d----------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..++|||+|||+++|+++|+++|++||+|.+|.|+++ ++||+|.+.++ |++|+..||+..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~----A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKA----ALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHH----HHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHH----HHHHHHHhcCcEEc
Confidence 3689999999999999999999999999999999865 57999999999 99999999987653
No 170
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4e-14 Score=89.74 Aligned_cols=52 Identities=31% Similarity=0.685 Sum_probs=47.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc---ceeEEecCCcccHHHHHHH
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR---FWFCHLCGRSCSRSCFSKV 155 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d---~~fv~f~~~~~~~~~a~~A 155 (171)
..++|||+|||+++++++|+++|++||+|.+|.|+++ ++||+|.+.++ |++|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~----a~~~ 58 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI----AQSL 58 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHH----HHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHH----HHHH
Confidence 4699999999999999999999999999999999854 88999999998 7654
No 171
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=2.3e-14 Score=88.05 Aligned_cols=55 Identities=29% Similarity=0.531 Sum_probs=50.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHh
Q 030822 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTA 162 (171)
Q Consensus 103 ~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~ 162 (171)
+|||+|||+.+++++|+++|++||+|.++.|++| ++||.|.+.++ |++|+.. ++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----a~~Ai~~-~~~ 63 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP----VKKIMEK-KYH 63 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHH----HHHHHTT-SSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHH----HHHHHHh-CCC
Confidence 5999999999999999999999999999999865 68999999999 9999985 443
No 172
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.46 E-value=1.3e-13 Score=93.26 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=50.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceE--EEEecCc-------ceeEEecCCcccHHHHHHHHHH
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--DVYVPKR-------FWFCHLCGRSCSRSCFSKVSRN 158 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~--~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~ 158 (171)
....++|||+|||+++|+++|+++|++| .|+ +|.|++| ++||+|.+.++ |++||+.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~----A~~Al~~ 103 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQEL----AEKALGK 103 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTH----HHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHH----HHHHHHH
Confidence 4457899999999999999999999999 677 8999865 68999999999 9999985
No 173
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.8e-14 Score=95.09 Aligned_cols=60 Identities=25% Similarity=0.445 Sum_probs=54.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAG 163 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~ 163 (171)
...++|||+|||+.+++++|+++|++||.|..|.|++| ++||+|.+.++ |++||.. |+..
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----a~~Ai~~-~~~~ 92 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE----VDAAMAA-RPHS 92 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHH----HHHHHTS-CSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHH----HHHHHHh-CCcE
Confidence 34689999999999999999999999999999999976 78999999999 9999987 6543
No 174
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=87.87 Aligned_cols=49 Identities=20% Similarity=0.415 Sum_probs=43.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc---CCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD---THELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~---~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||++||||||+|.+.++|++||+. +..++||+|.|.++.|+..
T Consensus 34 i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 34 LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 589999999999999999999999999984 3579999999999987643
No 175
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=7.3e-15 Score=97.97 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=57.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEE--------EEecCc--------ceeEEecCCcccHHHHHHHHHHHhH
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWT 161 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~--------v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~ 161 (171)
..+.++|||+|||+.+++++|+++|++||.|.+ |.|++| ++||+|.+.++ |++|+..||+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~----A~~Ai~~l~g 79 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS----AKAAIDWFDG 79 (116)
Confidence 345789999999999999999999999999999 888866 68999999999 9999999998
Q ss_pred hCCC
Q 030822 162 AGCN 165 (171)
Q Consensus 162 ~~~~ 165 (171)
..+.
T Consensus 80 ~~~~ 83 (116)
T 2lcw_A 80 KEFS 83 (116)
Confidence 7653
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=1.4e-13 Score=96.43 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=55.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 101 ~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.++|||+|||+++++++|+++|++||+|.++.|+++ ++||+|.+.++ |.+|+..||+..+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~----A~~a~~~l~~~~~ 69 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD----AEKAINTLNGLRL 69 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHH----HHHHHHHcCCCcc
Confidence 589999999999999999999999999999999876 47999999999 9999999998654
No 177
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=88.80 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEec-----CcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-----KRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~-----~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|+.|+.|.-+.-. +.++||+|.+.++ |++||..||+..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~----A~~A~~~l~g~~~ 79 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEED----AKAAKEAMEDGEI 79 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHH----HHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHH----HHHHHHHhCCCeE
Confidence 4568999999999999999999999998654333222 2378999999999 9999999998654
No 178
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.43 E-value=1.3e-13 Score=96.78 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=56.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
+.++|||+|||+++++++|+++|++||+|.+|.|+++ ++||+|.+.++ |.+|+..||+..+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~----A~~a~~~l~~~~~ 70 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMD----SQRAIKVLNGITV 70 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHH----HHHHHHhcCCCEe
Confidence 3689999999999999999999999999999999865 68999999999 9999999998654
No 179
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=2.7e-13 Score=100.50 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=58.5
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhcccceEEEEecCc---ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKR---FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~-~~te~~L~~~F~~fG~v~~v~i~~d---~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
.+..++|||+|||+ ++++++|+++|++||.|.+|+|++| ++||+|.+.++ |++|+..||+..+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~----A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQ----AQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHH----HHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHH----HHHHHHHhCCCeEC
Confidence 45679999999999 9999999999999999999999955 68999999999 99999999987653
No 180
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.42 E-value=1.4e-13 Score=102.56 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=58.0
Q ss_pred CCCCceEEEeCCCCCC---------CHHHHHHHhhcccceEEEEecC--cceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEA---------TAEDLRRYFSRFGRILDVYVPK--RFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~---------te~~L~~~F~~fG~v~~v~i~~--d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+ ++++|+++|++||+|++|+|+. .++||+|.++++ |+.|+..||+..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~----Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQAN----AEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHH----HHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHH----HHHHHHHhCCCEE
Confidence 4568999999999998 7999999999999999999985 578999999999 9999999999876
No 181
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=8.4e-14 Score=89.57 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=54.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEe---cCcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV---PKRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i---~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+.+++++|+++|++||.|..+.. .+.++||+|.+.++ |.+|+..||+..+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~ 78 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEAD----AEKNLEEKQGAEI 78 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHH----HHHHHHHTTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHH----HHHHHHHhCCCEE
Confidence 445799999999999999999999999999987722 13478999999999 9999999998654
No 182
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.7e-13 Score=92.09 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=53.0
Q ss_pred ceEEEeCC----CCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecC----CcccHHHHHHHHH--HHhHhC
Q 030822 102 KKIFVGRL----PQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCG----RSCSRSCFSKVSR--NLWTAG 163 (171)
Q Consensus 102 ~~lfV~nL----p~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~----~~~~~~~a~~Ai~--~l~~~~ 163 (171)
.+|||+|| |+.+++++|+++|++||+|.+|.++.| ++||+|.+ ++++..+|.+|+. .||+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999977 57899997 6665666888888 666654
Q ss_pred C
Q 030822 164 C 164 (171)
Q Consensus 164 ~ 164 (171)
+
T Consensus 83 I 83 (136)
T 2j8a_A 83 I 83 (136)
T ss_dssp E
T ss_pred e
Confidence 3
No 183
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=8.1e-14 Score=93.97 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=52.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccce----EEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRI----LDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAG 163 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v----~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~ 163 (171)
....+|||+|||+++|+++|+++|++||.| .+|.|++| ++||+|.+.++ |++||.. |+..
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~----A~~Al~~-~~~~ 91 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEY----AQNALRK-HKDL 91 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHH----HHHHHTT-TTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHH----HHHHHHh-CCCe
Confidence 356899999999999999999999999975 68888864 67999999999 9999986 6643
No 184
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=3.5e-14 Score=98.02 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=54.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEE--------Eec-----CcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV--------YVP-----KRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v--------~i~-----~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
..+.++|||+|||+.+|+++|+++|++||.|..| .+. +.++||.|.+.++ |.+|+..||+..+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~----A~~Ai~~lng~~~ 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKA----AAKALKEANGYVL 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHH----HHHHHHHHTTBEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHH----HHHHHHHhCCCEe
Confidence 3457899999999999999999999999998764 332 3478999999999 9999999998765
Q ss_pred C
Q 030822 165 N 165 (171)
Q Consensus 165 ~ 165 (171)
.
T Consensus 118 ~ 118 (143)
T 3egn_A 118 F 118 (143)
T ss_dssp T
T ss_pred C
Confidence 3
No 185
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=3.2e-13 Score=90.82 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=55.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEec--CcceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~--~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|| .+++++|+++|++||.|.+|.|+ +.++||+|.+.++ |++|+..||+..++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~----A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMES----ADQAVAELNGTQVE 99 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHH----HHHHHHHHTTCBCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHH----HHHHHHHhCCCEEC
Confidence 345789999995 69999999999999999999998 5688999999999 99999999987654
No 186
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.2e-13 Score=95.27 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=54.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 102 ~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
++|||+|||+++|+++|+++|++||+|.+|.|+++ ++||+|.+.++ |.+|+..||+..+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~~~~~ 66 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHD----ANIALQTLNGKQI 66 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHH----HHHHHHHcCCCcc
Confidence 58999999999999999999999999999999865 48999999999 9999999998754
No 187
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.40 E-value=2.4e-13 Score=109.81 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=57.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
...++|||+|||+.+|+++|+++|++||.|+.|.|+.| ++||+|.+.++ |..||..||+..++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~----A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD----MHSAYKHADGKKID 170 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH----HHHHHHHcCCCEEC
Confidence 34689999999999999999999999999999999865 68999999999 99999999987654
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.39 E-value=3.6e-13 Score=94.52 Aligned_cols=55 Identities=29% Similarity=0.550 Sum_probs=51.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHH
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRN 158 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~ 158 (171)
..++|||+|||+++|+++|+++|++||.|.+|.|++| ++||+|.+.++ |++|+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSS----VDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHH----HHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHH----HHHHHhc
Confidence 3689999999999999999999999999999999976 68999999999 9999987
No 189
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.39 E-value=6.6e-13 Score=96.89 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=56.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..++|||+|||+++|+++|+++|++||.|.+|.|++| ++||+|.+.++ |.+|+..||+..+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----A~~A~~~l~~~~~~ 96 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEA----AQLALEQMNSVMLG 96 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHH----HHHHHHHHSSCCCC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHH----HHHHHHHccCCeeC
Confidence 4689999999999999999999999999999999865 58999999999 99999999987654
No 190
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.38 E-value=5.1e-13 Score=86.07 Aligned_cols=46 Identities=28% Similarity=0.463 Sum_probs=41.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--C----CccCCeEEEEeecCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--T----HELGGSTVVVDRATP 46 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~----~~i~gr~i~v~~a~~ 46 (171)
|++|+.||+|||||||+|.+.++|++||+. + +.|+||+|.|.+|..
T Consensus 43 i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 43 LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 589999999999999999999999999984 3 369999999999853
No 191
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.38 E-value=1.3e-13 Score=87.70 Aligned_cols=59 Identities=29% Similarity=0.470 Sum_probs=52.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 102 ~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
++|||+|||+++++++|+++|++||+|.+|.|++| ++||+|.+.+ |++|+..||+..++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-----a~~a~~~l~g~~~~ 68 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-----VSEAIAKLDNTDFM 68 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-----HHHHHHTSCSSCCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-----HHHHHHHhCCCEEC
Confidence 68999999999999999999999999999999865 6789998753 68889999887654
No 192
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.38 E-value=3.8e-13 Score=96.75 Aligned_cols=57 Identities=26% Similarity=0.395 Sum_probs=52.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--------ceeEEecCCcccHHHHHHHHHH
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--------FWFCHLCGRSCSRSCFSKVSRN 158 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--------~~fv~f~~~~~~~~~a~~Ai~~ 158 (171)
....++|||+|||+++|+++|+++|++||.|.+|.|++| ++||+|.+.++ |.+|+..
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~----A~~A~~~ 74 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE----VDAAMNA 74 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH----HHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHH----HHHHHhc
Confidence 446799999999999999999999999999999999875 68999999999 9999976
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.37 E-value=7e-13 Score=95.80 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=56.6
Q ss_pred CceEEEeCCCC-CCCHHHHHHHhhcccceEEEEecCc---ceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 101 GKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKR---FWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 101 ~~~lfV~nLp~-~~te~~L~~~F~~fG~v~~v~i~~d---~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
+++|||+|||+ .+++++|+++|++||.|.+|.|+++ ++||+|.+.++ |.+|+..||+..+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~----a~~A~~~l~~~~~~ 67 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQ----AQLAMSHLNGHKLH 67 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHH----HHHHHHHHTTCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHH----HHHHHHHhCCCeec
Confidence 58999999999 9999999999999999999999965 68999999999 99999999987653
No 194
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=87.24 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=42.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATP 46 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~ 46 (171)
|++|+.||++||||||+|.+.++|++|++ ++..|+|++|.|.+|.|
T Consensus 51 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 46899999999999999999999999998 48999999999999875
No 195
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=3.7e-13 Score=105.22 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=57.3
Q ss_pred CCCCceEEEeC--CCCCCCHHHHHHHhhcccceEEEEec--CcceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGR--LPQEATAEDLRRYFSRFGRILDVYVP--KRFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~n--Lp~~~te~~L~~~F~~fG~v~~v~i~--~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
..++.+|||+| |++.+||++|+++|++||+|.+|.|+ +.++||+|.+.++ |++||+.||+..+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~----A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEE----SKRAYVTLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHH----HHHHHHHTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHH----HHHHHHHhCCCcc
Confidence 45678999999 57899999999999999999999986 5578999999999 9999999999876
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.34 E-value=1.4e-12 Score=98.47 Aligned_cols=63 Identities=29% Similarity=0.468 Sum_probs=57.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
....++|||+|||+++|+++|+++|++||.|.+|.|.++ ++||.|.+.++ |..|+..||+..+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~----A~~A~~~l~g~~i 83 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTL----AEIAKAELDGTIL 83 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHH----HHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHH----HHHHHHHcCCcEE
Confidence 455789999999999999999999999999999999965 67899999999 9999999998754
No 197
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.34 E-value=1.6e-12 Score=98.80 Aligned_cols=63 Identities=24% Similarity=0.393 Sum_probs=57.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHhhcccceEEEEecC-----cceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPK-----RFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~----~~F~~fG~v~~v~i~~-----d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.|++ .++||+|.+.++ |.+|+..||+..+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~----a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS----ATNALRSMQGFPF 77 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHH----HHHHHHHhcCCee
Confidence 4568999999999999999977 9999999999999986 588999999999 9999999998654
No 198
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.1e-12 Score=84.05 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=46.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhcCCccCCeEEEEeecCCCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDF 51 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~~~~i~gr~i~v~~a~~~~~~~ 51 (171)
|++|+.||++||||||+|.+.++|++||++++.|+|+.|.|.++.++.+..
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 47 VKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQD 97 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTTCCCC
T ss_pred EEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCCCcCC
Confidence 467889999999999999999999999999999999999999998875543
No 199
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.31 E-value=5.8e-13 Score=84.73 Aligned_cols=48 Identities=23% Similarity=0.339 Sum_probs=40.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+.||++||||||+|.+.++|++||+ ++..++||.|.|.++.++.
T Consensus 35 i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 35 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 46789999999999999999999999998 4789999999999987653
No 200
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.29 E-value=2.5e-12 Score=93.10 Aligned_cols=57 Identities=14% Similarity=0.332 Sum_probs=52.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHh
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLW 160 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~ 160 (171)
..++|||+|||+++++++|+++|++||+|.+|+|+++ ++||+|.+.++ |++|+..++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~----A~~A~~~~~ 171 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIES----AKKFVETPG 171 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHH----HHHHHHCTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHH----HHHHHHhCC
Confidence 3589999999999999999999999999999999853 78999999999 999998764
No 201
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.28 E-value=2.9e-12 Score=84.68 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.||+|||||||+|++.++|++||+ ++..|+|+.|.|.++...
T Consensus 38 i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 38 ILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 57899999999999999999999999999 488999999999998644
No 202
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.28 E-value=1.4e-12 Score=84.70 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=43.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCC-eEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGG-STVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~g-r~i~v~~a~~~ 47 (171)
|++|+.||++||||||+|.+.++|++||+ ++..|+| +.|.|.++.++
T Consensus 44 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 44 FPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 68899999999999999999999999998 4889999 99999998764
No 203
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.26 E-value=9.2e-12 Score=82.01 Aligned_cols=49 Identities=31% Similarity=0.549 Sum_probs=44.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||++||||||+|.+.++|++||+. ++.++|+.|.|.++.++..
T Consensus 57 i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 57 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp ECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCCC
T ss_pred EEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCCC
Confidence 478999999999999999999999999996 6899999999999987644
No 204
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-11 Score=79.68 Aligned_cols=49 Identities=37% Similarity=0.613 Sum_probs=44.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++..
T Consensus 42 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 42 MIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp ECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCC
T ss_pred EEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 47889999999999999999999999998 57899999999999987644
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=8.1e-12 Score=83.46 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=55.3
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHhhcccceEEEEecCc--ceeEEecC-CcccHHHHHHHHHHHhHh
Q 030822 98 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKR--FWFCHLCG-RSCSRSCFSKVSRNLWTA 162 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~-~te~~L~~~F~~fG~v~~v~i~~d--~~fv~f~~-~~~~~~~a~~Ai~~l~~~ 162 (171)
-++++-|||+||++. +++++|+++|++||+|.+|.+++| .+||.|.+ ..+ |+.|++.||.-
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~----A~~av~~ln~~ 79 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKE----ALGKAKDANNG 79 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHH----HHHHHHHTTTS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHH----HHHHHHHhhcC
Confidence 457899999999999 999999999999999999999987 57899999 688 99999999643
No 206
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.25 E-value=7e-12 Score=78.19 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=43.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+.+|+++|||||+|.+.++|++|++ ++..++|+.|.|.++.+++
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 33 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 46788899999999999999999999999 4889999999999998763
No 207
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=3e-11 Score=77.88 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=44.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.+|++||||||+|.+.++|++||+ ++..|+|+.|.|.++.++..
T Consensus 40 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 40 YPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp CCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 57888899999999999999999999997 47899999999999987644
No 208
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.9e-11 Score=78.29 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=44.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.+|+++|||||+|.+.++|++||+ +++.|+|+.|.|.++.++..
T Consensus 38 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 38 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred EEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCC
Confidence 47888999999999999999999999999 47899999999999987643
No 209
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=2.7e-11 Score=79.70 Aligned_cols=51 Identities=16% Similarity=0.349 Sum_probs=45.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--c------CCccCCeEEEEeecCCCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--D------THELGGSTVVVDRATPKEDDF 51 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~------~~~i~gr~i~v~~a~~~~~~~ 51 (171)
|++|+.||++||||||+|.+.++|++||+ + ++.|+|+.|.|.++.++....
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 47 VVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp CCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCCC
T ss_pred EEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccCC
Confidence 57899999999999999999999999998 4 789999999999998775443
No 210
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.23 E-value=9e-12 Score=76.28 Aligned_cols=44 Identities=36% Similarity=0.594 Sum_probs=40.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeec
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRA 44 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a 44 (171)
|++|+.+|++||||||+|.+.++|++|++ +++.++|+.|.|++|
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 31 LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 57888899999999999999999999998 478999999999875
No 211
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=1.3e-11 Score=80.20 Aligned_cols=49 Identities=22% Similarity=0.479 Sum_probs=43.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||++||||||+|.+.++|++||. ++..|+|+.|.|.++.++..
T Consensus 46 i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 46 LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCC
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCC
Confidence 46788999999999999999999999995 37899999999999987643
No 212
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.4e-11 Score=81.48 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=53.4
Q ss_pred CCCCceEEEeCCCCCCC-----------HHHHHHHhhcccceEEEEec----CcceeEEecCCcccHHHHHHHHHHHhHh
Q 030822 98 QRIGKKIFVGRLPQEAT-----------AEDLRRYFSRFGRILDVYVP----KRFWFCHLCGRSCSRSCFSKVSRNLWTA 162 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~t-----------e~~L~~~F~~fG~v~~v~i~----~d~~fv~f~~~~~~~~~a~~Ai~~l~~~ 162 (171)
..++++|+|.||....+ +++|+++|++||+|.+|.|. +.++||+|.+.++ |++|+..||+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~----A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEE----ADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHH----HHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHH----HHHHHHHcCCC
Confidence 45689999999954432 58999999999999999775 4588999999999 99999999986
Q ss_pred CC
Q 030822 163 GC 164 (171)
Q Consensus 163 ~~ 164 (171)
.+
T Consensus 88 ~~ 89 (112)
T 2dit_A 88 WF 89 (112)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 213
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=79.98 Aligned_cols=49 Identities=27% Similarity=0.559 Sum_probs=44.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.+|++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++.+
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 44 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 46788999999999999999999999998 48899999999999987644
No 214
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.21 E-value=2.6e-11 Score=77.81 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=43.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+.+|+++|||||+|.+.++|++|++ ++..++|+.|.|.++.++.
T Consensus 34 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 34 MMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp CCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 57888999999999999999999999998 4889999999999998763
No 215
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.21 E-value=2.4e-11 Score=79.53 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=53.1
Q ss_pred CCCceEEEeCCCC-----CCCHHHHHHHhhcccceEEEEecCc---------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQ-----EATAEDLRRYFSRFGRILDVYVPKR---------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~-----~~te~~L~~~F~~fG~v~~v~i~~d---------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.++++|+|+||.. ..++++|+++|++||+|.+|.|++| ++||+|.+.++ |.+|+..||+..+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~----A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVES----AIKAVVDLNGRYF 81 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHH----HHHHHHHHTTCEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHH----HHHHHHHHCCCEE
Confidence 4578999999963 2378999999999999999999864 56899999999 9999999998654
No 216
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=3.2e-11 Score=78.15 Aligned_cols=49 Identities=31% Similarity=0.497 Sum_probs=44.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.+|+++|||||+|.+.++|++||+ +++.|+|+.|.|.++.++..
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 44 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp CCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 57899999999999999999999999998 48899999999999987643
No 217
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.21 E-value=9.2e-12 Score=87.65 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=53.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcc----c-------ceEEEEecCc--ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKR--FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~f----G-------~v~~v~i~~d--~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
..++|||+|||+++|+++|+++|++| | .|.++.+.++ ++||+|.+.++ |.+|+ .||+..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~----A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE----TTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHH----HHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHH----HHHHH-HhCCcEe
Confidence 36899999999999999999999999 7 8899988754 78899999999 99999 8987654
No 218
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=3.9e-11 Score=79.21 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=44.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++..
T Consensus 55 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 55 IYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred EEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 57888999999999999999999999999 58899999999999987643
No 219
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=77.84 Aligned_cols=47 Identities=30% Similarity=0.451 Sum_probs=41.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.+|+++|||||+|.+.++|++|++ ++..++|+.|.|.++.++
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 38 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 46788899999999999999999999999 488999999999998764
No 220
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=1.7e-11 Score=79.35 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=35.8
Q ss_pred ccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCC
Q 030822 10 HRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~ 48 (171)
++|||||+|.+.++|++|++. +..++|+.|.|.++.++.
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 899999999999999999994 788999999999998764
No 221
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=2.4e-11 Score=80.67 Aligned_cols=50 Identities=36% Similarity=0.626 Sum_probs=45.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeecCCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDD 50 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a~~~~~~ 50 (171)
|++|+.||++||||||+|.+.++|++||+. ++.|+|+.|.|.++.++...
T Consensus 59 i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 59 VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCC
T ss_pred EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCccC
Confidence 468889999999999999999999999995 78999999999999887554
No 222
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=3.8e-11 Score=78.22 Aligned_cols=49 Identities=29% Similarity=0.527 Sum_probs=44.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.+|++||||||+|.+.++|++||+. ++.|+|+.|.|.++.++..
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 47 MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp CCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred EEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 578888999999999999999999999994 7899999999999987644
No 223
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.5e-11 Score=80.03 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=43.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCc-cCCeEEEEeecCCCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THE-LGGSTVVVDRATPKEDDF 51 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~-i~gr~i~v~~a~~~~~~~ 51 (171)
|++|+ +|++||||||+|.+.++|++||+. +.. |+|+.|.|.++.++....
T Consensus 42 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 42 VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 94 (104)
T ss_dssp EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCC
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCC
Confidence 46788 999999999999999999999994 677 999999999998765443
No 224
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=3.4e-11 Score=76.99 Aligned_cols=49 Identities=29% Similarity=0.517 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||+++|||||+|.+.++|++||+ +++.|+|+.|.|.++.++..
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 37 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 46788899999999999999999999999 48899999999999987643
No 225
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.19 E-value=1.3e-11 Score=75.54 Aligned_cols=44 Identities=32% Similarity=0.561 Sum_probs=40.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeec
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRA 44 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a 44 (171)
|++|+.||++||||||+|.+.++|++|++. ++.++|+.|.|++|
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 31 LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred EEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 578999999999999999999999999995 78999999999865
No 226
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.19 E-value=5.8e-11 Score=78.63 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=44.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (171)
|++|+.+|++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++...
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 47 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 46788899999999999999999999998 478999999999999876443
No 227
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=8.7e-11 Score=77.94 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=43.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||++||||||+|.+.++|++||+. ...|+|+.|.|.++.++..
T Consensus 49 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 49 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 98 (116)
T ss_dssp ESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTTCC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccCCC
Confidence 578899999999999999999999999995 3489999999999976533
No 228
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.18 E-value=1.3e-11 Score=79.87 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=43.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~ 48 (171)
+++|+.+|++||||||+|.+.++|++||+ ++..|+|+.|.|.++.++.
T Consensus 48 ~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 48 AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCC
Confidence 57788899999999999999999999998 4688999999999998764
No 229
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=86.96 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=43.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.||++||||||+|.+.++|++||+. +..|+|+.|.|.++.++
T Consensus 89 i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 89 FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 468999999999999999999999999995 78999999999998754
No 230
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=3.3e-11 Score=78.29 Aligned_cols=49 Identities=18% Similarity=0.382 Sum_probs=44.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.+|+++|||||+|.+.++|++||+ ++..|+|+.|.|.++.++..
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 47 LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 46788899999999999999999999999 47899999999999987643
No 231
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.18 E-value=2.6e-11 Score=78.52 Aligned_cols=48 Identities=23% Similarity=0.514 Sum_probs=42.6
Q ss_pred CCCCC-CCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQ-GSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~-~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+ .+|++||||||+|.+.++|++||. ++..|+|+.|.|.++.++.
T Consensus 50 i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 50 LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCCSC
T ss_pred EEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccCCC
Confidence 57787 699999999999999999999995 3789999999999987653
No 232
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.18 E-value=1.8e-11 Score=77.09 Aligned_cols=44 Identities=34% Similarity=0.578 Sum_probs=40.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeec
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRA 44 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a 44 (171)
|++|+.||+++|||||+|.+.++|++||+. ++.|+|+.|.|++|
T Consensus 43 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 43 IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred EeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 467889999999999999999999999985 78899999999875
No 233
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=6.1e-11 Score=77.17 Aligned_cols=50 Identities=24% Similarity=0.533 Sum_probs=44.2
Q ss_pred CCCCCCC-CCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCCCC
Q 030822 1 MPKDQGS-KAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDD 50 (171)
Q Consensus 1 i~~D~~t-g~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~~~ 50 (171)
|++|+.| |++||||||+|.+.++|++||. ++..|+|+.|.|.++.++...
T Consensus 46 i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 46 LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp CCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCCC
T ss_pred EecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCCCC
Confidence 5788888 9999999999999999999995 378999999999999876443
No 234
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1e-10 Score=76.68 Aligned_cols=47 Identities=23% Similarity=0.365 Sum_probs=42.7
Q ss_pred CCCCCCCccceEEEEECCHHHHHHHHhc----CCccCCeEEEEeecCCCCC
Q 030822 3 KDQGSKAHRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (171)
Q Consensus 3 ~D~~tg~srGfgFV~F~~~~~a~~Al~~----~~~i~gr~i~v~~a~~~~~ 49 (171)
+|+.||++||||||+|.+.++|++|++. +..++|+.|.|.++.++..
T Consensus 44 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 44 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 7899999999999999999999999994 3789999999999987654
No 235
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.18 E-value=2e-11 Score=87.78 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=52.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcc----c-------ceEEEEecC--cceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPK--RFWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~f----G-------~v~~v~i~~--d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
..++|||+|||+++++++|+++|++| | .|.++.+.+ .++||+|.+.++ |++|+ .||+..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~----A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE----TTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHH----HHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHH----HHHHH-HhcCCEE
Confidence 36899999999999999999999999 5 788888874 578999999999 99999 8988654
No 236
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.3e-11 Score=80.42 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=41.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+ +|++||||||+|++.++|++||+ +++.|+||.|.|.++.+..
T Consensus 46 i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 46 IEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp EEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCC
Confidence 46787 99999999999999999999997 4789999999999887553
No 237
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.17 E-value=2.6e-11 Score=82.31 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=43.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CC----ccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--TH----ELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~----~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||++||||||+|.+. +|.+||.. +. .|+||.|.|+++.++..
T Consensus 57 i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 57 VIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred EEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 689999999999999999999 99999994 67 99999999999987543
No 238
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=4.2e-11 Score=77.76 Aligned_cols=47 Identities=28% Similarity=0.474 Sum_probs=43.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.||++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++
T Consensus 45 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 45 IPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp CCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred EEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 57899999999999999999999999999 488999999999999765
No 239
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.17 E-value=3.5e-11 Score=79.76 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.+|++||||||+|.+.++|++||+ ++..|+|+.|.|.++.++..
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 57 VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 46788899999999999999999999998 48899999999999987644
No 240
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=4.3e-11 Score=77.53 Aligned_cols=49 Identities=31% Similarity=0.607 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.+|++||||||+|.+.++|++||+ ++..|+|+.|.|.++.++..
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 44 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 46888999999999999999999999998 47899999999999987644
No 241
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=79.67 Aligned_cols=49 Identities=27% Similarity=0.552 Sum_probs=44.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.+|++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++..
T Consensus 48 i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 48 IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp EEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSC
T ss_pred EeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCC
Confidence 46788999999999999999999999999 58899999999999987654
No 242
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=3.1e-11 Score=79.56 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=40.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+. |++||||||+|.+.++|++||. +++.|+||.|.|..+.++
T Consensus 47 i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 47 LLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp ECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 478875 9999999999999999999997 478999999999887543
No 243
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.16 E-value=5e-11 Score=78.31 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=43.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+.+|+++|||||+|.+.++|++||. ++..|+|+.|.|.++.++.
T Consensus 58 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 58 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 57889999999999999999999999999 4889999999999997653
No 244
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.4e-11 Score=79.28 Aligned_cols=47 Identities=15% Similarity=0.298 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.||+++|||||+|.+.++|++||+ +++.|+|+.|.|.++.++
T Consensus 55 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 55 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 46788999999999999999999999998 488999999999998765
No 245
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.15 E-value=2.5e-11 Score=78.35 Aligned_cols=45 Identities=22% Similarity=0.342 Sum_probs=40.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~ 45 (171)
|++|+.||++||||||+|.+.++|++|++ ++..++|+.|.|.+|.
T Consensus 53 i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 53 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp EEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred EEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 46788999999999999999999999998 4889999999999873
No 246
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2.1e-11 Score=80.82 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=42.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a~~~ 47 (171)
|++|+ ||++||||||+|.+.++|++||+. ++.|+||.|.|.++.++
T Consensus 48 i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 48 VLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp ECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHH
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHH
Confidence 47888 999999999999999999999985 78999999999998764
No 247
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=8.6e-11 Score=76.60 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=42.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a~~~~ 48 (171)
|++| .+|++||||||+|.++++|++||+. +..|+||.|.|.++.+++
T Consensus 48 i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 48 LPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp CCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred EEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHH
Confidence 5677 7999999999999999999999995 889999999999887653
No 248
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.14 E-value=2.2e-11 Score=80.04 Aligned_cols=48 Identities=25% Similarity=0.487 Sum_probs=43.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+.+|++||||||+|.+.++|++|++ ++..|+|+.|.|.++.++.
T Consensus 58 i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 58 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 46788899999999999999999999998 5889999999999998763
No 249
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.14 E-value=4.3e-11 Score=74.89 Aligned_cols=44 Identities=32% Similarity=0.532 Sum_probs=40.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeec
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRA 44 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a 44 (171)
|++|+.+|+++|||||+|.+.++|++|++ ++..++|+.|.|.++
T Consensus 39 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 39 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56888999999999999999999999997 488999999999986
No 250
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=4.3e-11 Score=75.98 Aligned_cols=46 Identities=17% Similarity=0.373 Sum_probs=41.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~ 47 (171)
|++| .+|+++|||||+|.+.++|++||+ ++..|+|+.|.|.++.++
T Consensus 41 i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 41 IVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp EEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSC
T ss_pred EEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcC
Confidence 4677 799999999999999999999999 467999999999999766
No 251
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.13 E-value=6.9e-11 Score=80.85 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=43.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||++||||||+|.+.++|++||+. +..|+|+.|.|.++.++..
T Consensus 74 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 74 IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 467888999999999999999999999994 7899999999999987644
No 252
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=5.7e-11 Score=76.72 Aligned_cols=47 Identities=6% Similarity=0.282 Sum_probs=42.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+ +|++||||||+|.+.++|++||+ ++..++|+.|.|.++.++.
T Consensus 49 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 49 LVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred EEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 35677 99999999999999999999998 4789999999999998764
No 253
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=7.1e-11 Score=75.33 Aligned_cols=45 Identities=27% Similarity=0.458 Sum_probs=41.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~ 45 (171)
|++|+.+|+++|||||+|.+.++|++|++ ++..|+|+.|.|.++.
T Consensus 48 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 48 IMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp ECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 46888999999999999999999999998 4789999999999873
No 254
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-10 Score=77.60 Aligned_cols=47 Identities=28% Similarity=0.491 Sum_probs=42.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+ +|+++|||||+|.+.++|++||+ ++..|+|+.|.|.++.++.
T Consensus 39 i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 39 LIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp EECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred EEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 45777 99999999999999999999998 4789999999999997654
No 255
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.13 E-value=1.5e-10 Score=75.49 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=43.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCcc---CCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THEL---GGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i---~gr~i~v~~a~~~~~ 49 (171)
|++|+.||++||||||+|.+.++|++||+. +..+ .|+.|.|.++.++..
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 45 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 578999999999999999999999999984 6666 889999999987643
No 256
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=1.7e-10 Score=75.32 Aligned_cols=49 Identities=29% Similarity=0.585 Sum_probs=43.9
Q ss_pred CCCC-CCCCCccceEEEEECCHHHHHHHHh---cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKD-QGSKAHRGIGFITFASADSVENLMV---DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D-~~tg~srGfgFV~F~~~~~a~~Al~---~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++| +.+|++||||||+|.+.++|++||+ ++..|+|+.|.|.++.++..
T Consensus 47 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 47 LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 5677 7899999999999999999999998 47899999999999987644
No 257
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.12 E-value=5.4e-11 Score=76.51 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=41.5
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCC
Q 030822 2 PKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (171)
Q Consensus 2 ~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~ 47 (171)
++|+.+|++||||||+|.+.++|++||+. +..|+|+.|.|.++..+
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp EEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 56788999999999999999999999984 78999999999998654
No 258
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.12 E-value=1.3e-10 Score=81.18 Aligned_cols=47 Identities=30% Similarity=0.473 Sum_probs=43.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.||++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++
T Consensus 102 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 102 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp CCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 57899999999999999999999999998 478999999999999765
No 259
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.12 E-value=5.6e-11 Score=80.60 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=43.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.||++||||||+|.+.++|++||+ ++..|+|++|.|.++.++
T Consensus 78 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 78 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 46788999999999999999999999999 488999999999999765
No 260
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.12 E-value=1.5e-11 Score=83.01 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=41.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a~~~ 47 (171)
|++|+. |++||||||+|.++++|++||+. +..|+||.|.|.++.++
T Consensus 75 i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 75 LPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp CCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred EEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence 578887 99999999999999999999995 78999999999987643
No 261
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.12 E-value=2.3e-11 Score=85.97 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=52.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEec-------CcceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP-------KRFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~-------~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
....++|||+|||+.+++++|+++|++||.+..+.|. +.++||+|.+.++ |.+|+ .||+..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~----a~~A~-~l~g~~~~ 79 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAED----LEKAL-ELTGLKVF 79 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHH----HHHHH-HGGGEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHH----HHHHH-hcCCCEeC
Confidence 4568999999999999999999999999977652221 3478999999999 99999 59987553
No 262
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.11 E-value=5.9e-11 Score=74.89 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=41.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.+|+++|||||+|.+.++|++|+. ++..++|+.|.|.++.++
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 38 ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 46788899999999999999999999995 378999999999998653
No 263
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=6.2e-11 Score=75.71 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=41.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATP 46 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~ 46 (171)
|++|+.||++||||||+|.+.++|++||+ ++..|+|+.|.|.++.+
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 47 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 46788999999999999999999999999 47899999999998753
No 264
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=3.3e-11 Score=73.98 Aligned_cols=44 Identities=32% Similarity=0.549 Sum_probs=40.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeec
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRA 44 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a 44 (171)
|++|+.+|++||||||+|.+.++|++|++. .+.++|++|.|++|
T Consensus 32 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 32 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp EECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred EecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 467889999999999999999999999995 47899999999986
No 265
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=4.9e-11 Score=77.78 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=40.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeecCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATP 46 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a~~ 46 (171)
|++|+. |++||||||+|.+.++|++||.. ++.++|+.|.|+++..
T Consensus 43 i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 43 MRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp EECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred EEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 467877 99999999999999999999994 7899999999998743
No 266
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=2.5e-10 Score=73.80 Aligned_cols=47 Identities=21% Similarity=0.514 Sum_probs=41.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
|++| .+|++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++.
T Consensus 44 ~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 44 VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 4566 789999999999999999999999 4789999999999998763
No 267
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.09 E-value=4.5e-11 Score=75.69 Aligned_cols=47 Identities=26% Similarity=0.513 Sum_probs=40.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+.||++||||||+|.+.+ |++|+.. +..++|+.|.|++|.++.
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 33 LIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp ECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred EEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 4688899999999999999999 9999994 789999999999997653
No 268
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.09 E-value=2.3e-11 Score=80.57 Aligned_cols=65 Identities=12% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCCCCCCcCCCCCCCCccccchhhhhhhccCCCCcc
Q 030822 7 SKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 84 (171)
Q Consensus 7 tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (171)
+++++|||||+|.+.++|++|++ ++..++|+.|.|.++.++..
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~----------------------------------- 87 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA----------------------------------- 87 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH-----------------------------------
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh-----------------------------------
Confidence 46779999999999999999999 48899999999999865311
Q ss_pred CCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHhhcccc
Q 030822 85 DHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR 127 (171)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~ 127 (171)
. .+++...++++|+++|++||-
T Consensus 88 ----------------~-----~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 88 ----------------F-----QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ----------------T-----TTSCHHHHHHHHHHHHHHHCC
T ss_pred ----------------h-----hhhhHhHhHHHHHHHHHHhCC
Confidence 0 567888899999999999984
No 269
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.08 E-value=7.5e-11 Score=75.35 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=40.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~ 45 (171)
|++|+.+|++||||||+|.+.++|++||+ +++.|+|+.|.|.++.
T Consensus 47 ~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 47 CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35678899999999999999999999998 4889999999999775
No 270
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.08 E-value=1.3e-10 Score=78.08 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=44.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||+++|||||+|.+.++|++||+ ++..|+|+.|.|.++.++..
T Consensus 54 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 54 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp CCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 57888999999999999999999999998 58899999999999976543
No 271
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=5.4e-11 Score=77.31 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=43.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+.+|+++|||||+|.+.++|++|++ ++..++|+.|.|.++.++.
T Consensus 40 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 40 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 35788899999999999999999999998 4789999999999997653
No 272
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.06 E-value=3.4e-11 Score=82.43 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+. |++||||||+|.+.++|++||+ ++..|+||.|.|.++.++
T Consensus 79 i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 79 FIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp EEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence 467876 9999999999999999999999 468999999999988654
No 273
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.06 E-value=2e-10 Score=77.04 Aligned_cols=47 Identities=26% Similarity=0.341 Sum_probs=41.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.+|+++|||||+|.+.++|++||+ +++.|+|+.|.|.++.+.
T Consensus 68 i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 68 ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCC
T ss_pred EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCC
Confidence 35788899999999999999999999995 378999999999998754
No 274
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=1.2e-10 Score=74.84 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=41.3
Q ss_pred CCCCC---CCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 2 PKDQG---SKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 2 ~~D~~---tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
++|+. ||++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++..
T Consensus 38 ~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 38 SKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp EEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred EecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 34544 77999999999999999999999 47899999999999976543
No 275
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.05 E-value=9.4e-11 Score=76.81 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=41.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+. |++||||||+|.+.++|++||+ +++.|+||.|.|.++.++
T Consensus 46 i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 46 FLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp CCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHH
T ss_pred EEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHH
Confidence 578887 9999999999999999999999 478899999999988654
No 276
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=9.7e-11 Score=75.45 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=42.3
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeE----EEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGST----VVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~----i~v~~a~~~ 47 (171)
|++|+.||+++|||||+|.+.++|++|++. +..++|+. |.|.++.+.
T Consensus 42 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 42 IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 467889999999999999999999999994 78999999 999988754
No 277
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.05 E-value=2.3e-10 Score=74.88 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=51.8
Q ss_pred CCCceEEEeCC--CCCCC--------HHHHHHHhhcccceEEEEecCc----------ceeEEecCCcccHHHHHHHHHH
Q 030822 99 RIGKKIFVGRL--PQEAT--------AEDLRRYFSRFGRILDVYVPKR----------FWFCHLCGRSCSRSCFSKVSRN 158 (171)
Q Consensus 99 ~~~~~lfV~nL--p~~~t--------e~~L~~~F~~fG~v~~v~i~~d----------~~fv~f~~~~~~~~~a~~Ai~~ 158 (171)
.+++.|.+.|+ |.... +++|+++|++||+|++|.|+++ ++||+|.+.++ |.+|++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~----A~~Ai~~ 78 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFD----CQKAMQG 78 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHH----HHHHHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHH----HHHHHHH
Confidence 35788999998 33433 3799999999999999999865 46899999999 9999999
Q ss_pred HhHhCC
Q 030822 159 LWTAGC 164 (171)
Q Consensus 159 l~~~~~ 164 (171)
||+..+
T Consensus 79 lnG~~f 84 (105)
T 3v4m_A 79 LTGRKF 84 (105)
T ss_dssp HTTCEE
T ss_pred hCCCEe
Confidence 998653
No 278
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.05 E-value=1.4e-10 Score=75.91 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=40.2
Q ss_pred CCCCCCC-CCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCC
Q 030822 1 MPKDQGS-KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATP 46 (171)
Q Consensus 1 i~~D~~t-g~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~ 46 (171)
|++|+.+ +++||||||+|.+.++|++|++ ++..++||.|.|.++.+
T Consensus 45 i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 45 IFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp EEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred EecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 4567654 7999999999999999999999 48999999999998853
No 279
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.05 E-value=1.2e-10 Score=77.38 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=40.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeec
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRA 44 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a 44 (171)
|++|+.+|++||||||+|.+.++|++||+. +..|+|+.|.|.++
T Consensus 72 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 72 VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp ECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 468889999999999999999999999994 78999999999876
No 280
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.04 E-value=6.8e-11 Score=81.21 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=41.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+. |++||||||+|++.++|++||+ +++.|+||.|.|.++.++.
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSC
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCC
Confidence 578876 9999999999999999999996 3789999999999887653
No 281
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=2.5e-10 Score=75.21 Aligned_cols=47 Identities=11% Similarity=0.180 Sum_probs=40.4
Q ss_pred CCCCCCC---CccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 2 PKDQGSK---AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 2 ~~D~~tg---~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
++|+.++ ++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++.
T Consensus 51 ~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 51 NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 5666654 566999999999999999999 4889999999999998763
No 282
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=2.9e-10 Score=73.78 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=41.7
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCC
Q 030822 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDD 50 (171)
Q Consensus 2 ~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~ 50 (171)
++| +|+++|||||+|.+.++|++||+ ++..|+|+.|.|.++.++...
T Consensus 48 ~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 48 MME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp EEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred EcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence 455 89999999999999999999999 488999999999999876543
No 283
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.03 E-value=2e-10 Score=74.95 Aligned_cols=43 Identities=9% Similarity=0.258 Sum_probs=38.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeec
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRA 44 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a 44 (171)
|++|+ +|++||||||+|.++++|++|++ ++..++||.|.|.++
T Consensus 59 i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 59 VCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp ECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 45665 48999999999999999999999 489999999999875
No 284
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.03 E-value=4.5e-11 Score=77.48 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=42.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhcCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+ +|++||||||+|.+.++|++|+++++.++|+.|.|.++.++..
T Consensus 41 i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 41 IITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp EEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEECC-
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCcCcc
Confidence 46787 9999999999999999999999988899999999999976643
No 285
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.03 E-value=2.4e-10 Score=78.01 Aligned_cols=47 Identities=30% Similarity=0.473 Sum_probs=43.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.+|++||||||+|.+.++|++||+ ++..|+|+.|.|.++.++
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 57888999999999999999999999998 478999999999999764
No 286
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.7e-10 Score=76.33 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=42.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.||++||||||+|.+.++|++||. +++.|+|+.|.|.++.++
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 57 IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp ECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred EEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 46899999999999999999999999995 378999999999998654
No 287
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.03 E-value=2e-10 Score=72.22 Aligned_cols=47 Identities=17% Similarity=0.415 Sum_probs=41.6
Q ss_pred CCCCCCCCC-ccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKA-HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~-srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.++. ++|||||+|.+.++|++|++ ++..++|+.|.|.++.++
T Consensus 36 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 36 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 466777766 99999999999999999999 589999999999998764
No 288
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.03 E-value=2.9e-10 Score=73.95 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=41.6
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCC---eEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGG---STVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~g---r~i~v~~a~~~~~ 49 (171)
|++|+ +|++||||||+|.+.++|++||+ ++..+.| +.|.|.++.++..
T Consensus 47 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 47 VLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp EEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred EEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 35676 89999999999999999999998 4777887 9999999987644
No 289
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.02 E-value=1.6e-10 Score=77.05 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=40.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+. |++||||||+|.+.++|++||+ +++.|+||.|.|.++.++
T Consensus 52 i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 52 FIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp EEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHH
Confidence 357776 9999999999999999999999 478999999999988654
No 290
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.02 E-value=3.8e-10 Score=75.34 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=51.8
Q ss_pred CCceEEEeCCCC--CC---CHHHHHHHhhcccceEEEEecCc------------ceeEEecCCcccHHHHHHHHHHHhHh
Q 030822 100 IGKKIFVGRLPQ--EA---TAEDLRRYFSRFGRILDVYVPKR------------FWFCHLCGRSCSRSCFSKVSRNLWTA 162 (171)
Q Consensus 100 ~~~~lfV~nLp~--~~---te~~L~~~F~~fG~v~~v~i~~d------------~~fv~f~~~~~~~~~a~~Ai~~l~~~ 162 (171)
+++.|++.|+-. ++ -+++|++.|++||+|.+|.|++| ++||+|.+.++ |.+|+..||+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~----A~~Ai~~LnGr 94 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASE----THKAIQALNGR 94 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHH----HHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHH----HHHHHHHHCCC
Confidence 578999999942 22 36999999999999999999865 36899999999 99999999986
Q ss_pred CC
Q 030822 163 GC 164 (171)
Q Consensus 163 ~~ 164 (171)
.+
T Consensus 95 ~f 96 (118)
T 3ue2_A 95 WF 96 (118)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 291
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=5.9e-11 Score=79.77 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=41.4
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCC
Q 030822 2 PKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 2 ~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~ 47 (171)
+.|..||++||||||+|.+.++|++||+ +++.|+||.|.|.++.++
T Consensus 58 ~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 58 IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHH
T ss_pred EEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHH
Confidence 4567899999999999999999999999 478999999999998754
No 292
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.02 E-value=4.6e-10 Score=75.31 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
|++|+ +|++||||||+|.+.++|++|++ ++..|+|+.|.|.++.+..
T Consensus 67 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 67 VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp EECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 45787 99999999999999999999999 4889999999999997653
No 293
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=8.8e-10 Score=71.40 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=48.7
Q ss_pred CceEEEeCCC-------CCCCHHHHHHHhhcccceEEEEec---CcceeEEecCCcccHHHHHHHHHHHhHhC
Q 030822 101 GKKIFVGRLP-------QEATAEDLRRYFSRFGRILDVYVP---KRFWFCHLCGRSCSRSCFSKVSRNLWTAG 163 (171)
Q Consensus 101 ~~~lfV~nLp-------~~~te~~L~~~F~~fG~v~~v~i~---~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~ 163 (171)
..+|-|.-.. ..+++++|+++|++||.|.+|.|+ +.++||+|.+.++ |+.|++.+++..
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~----A~~Ai~~~~~~~ 78 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKA----AELAVQNEVGLV 78 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHH----HHHHHHTCCBCS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHH----HHHHHHhcCCCC
Confidence 4456665443 458999999999999999999996 5689999999999 999999876643
No 294
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.01 E-value=1.1e-10 Score=86.68 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=42.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATP 46 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~ 46 (171)
|++|+.||++||||||+|.+.++|++||+. ++.|+|+.|.|.++.+
T Consensus 102 i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 102 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 578999999999999999999999999994 7899999999999864
No 295
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=4.5e-11 Score=80.44 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=40.5
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a~~~ 47 (171)
|++| .+|++||||||+|.+.++|++||+. ++.|+||.|.|..+.++
T Consensus 59 i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 59 FVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp EEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEECHH
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHH
Confidence 3567 4999999999999999999999995 78999999999987654
No 296
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.01 E-value=3.5e-10 Score=78.83 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||++||||||+|.+.++|++||+ +++.|+|+.|.|.++.++..
T Consensus 71 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 71 MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 46788999999999999999999999999 47899999999999986543
No 297
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.57 E-value=3.5e-11 Score=79.93 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=44.1
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||++||||||+|.+.++|++||+ ++..|+|+.|.|.++.++..
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 47 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 46788999999999999999999999999 47899999999999987643
No 298
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=9.2e-10 Score=72.60 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=40.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+ +|++||||||+|.+.++|++||+ +++.|+|+.|.|.++...
T Consensus 47 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 47 ILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp EEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred EEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 35676 69999999999999999999999 488999999999998653
No 299
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=7.4e-10 Score=71.02 Aligned_cols=44 Identities=9% Similarity=0.134 Sum_probs=38.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~ 47 (171)
|++|+.+ ||||||+|.+.++|++||+. +..++||.|.|.++.++
T Consensus 45 i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 45 LSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp ECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCS
T ss_pred EEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 4677766 89999999999999999994 78999999999999765
No 300
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=9.9e-11 Score=73.29 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=38.8
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeec
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRA 44 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a 44 (171)
|++|+.+|++||||||+|.+.++|++|++. +..++|+.|++.++
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 37 AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467889999999999999999999999994 77899998877654
No 301
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.4e-10 Score=77.96 Aligned_cols=44 Identities=16% Similarity=0.018 Sum_probs=36.8
Q ss_pred CCCCCCCCCccceEEEEECC----HHH----HHHHHh----cCCccCCeEEEEeec
Q 030822 1 MPKDQGSKAHRGIGFITFAS----ADS----VENLMV----DTHELGGSTVVVDRA 44 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~----~~~----a~~Al~----~~~~i~gr~i~v~~a 44 (171)
++.|+.||+|||||||+|.+ +++ |.+|+. ++..|+||+|+|...
T Consensus 38 li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 38 AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 46899999999999999996 433 888988 588999999999864
No 302
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.99 E-value=3.6e-10 Score=73.76 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=40.0
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~ 45 (171)
|++|+ +|+++|||||+|.+.++|++||+ ++..|+|+.|.|.++.
T Consensus 61 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 61 VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 45777 99999999999999999999999 5889999999999874
No 303
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=2.8e-10 Score=71.74 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=53.1
Q ss_pred CCCceEEEeCCC----CCCCH----HHHHHHhhcccceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 99 RIGKKIFVGRLP----QEATA----EDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 99 ~~~~~lfV~nLp----~~~te----~~L~~~F~~fG~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
++..+|+|.-++ .++-+ .+|.+.|++||.|..++|+.|++||+|.+.++ |.+||. ||+..+.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~s----AlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSS----ALNVLS-LNGKELL 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHH----HHHGGG-GTTCEET
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHH----HHHHHh-cCCeEeC
Confidence 456889998776 23433 78999999999999999999999999999988 999998 9998764
No 304
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.98 E-value=5.6e-10 Score=72.81 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=39.4
Q ss_pred CCCCCccceEEEEECCHHHHHHHHhc--CCccCCe-EEEEeecCCCC
Q 030822 5 QGSKAHRGIGFITFASADSVENLMVD--THELGGS-TVVVDRATPKE 48 (171)
Q Consensus 5 ~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr-~i~v~~a~~~~ 48 (171)
+.||++||||||+|.+.++|++||.. +..|+|+ .|.|.++...+
T Consensus 55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 46899999999999999999999994 7899998 99999987543
No 305
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.97 E-value=4e-10 Score=71.92 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=39.2
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~ 45 (171)
|++|+. |++||||||+|.+.++|++||+ +++.++|+.|.|.++.
T Consensus 48 i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 48 ICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp EEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 356765 9999999999999999999999 4889999999999874
No 306
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=6.6e-10 Score=73.43 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=40.8
Q ss_pred CCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 4 DQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 4 D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
+..+|++||||||+|.+.++|++||+ ++..|+|+.|.|.++.++..
T Consensus 60 ~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 60 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp EEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred EcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 44589999999999999999999998 47899999999999987643
No 307
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.96 E-value=7.3e-10 Score=74.89 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=39.1
Q ss_pred CCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCC
Q 030822 6 GSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (171)
Q Consensus 6 ~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~ 48 (171)
.+|++||||||+|.+.++|++|++. +..|.|++|.|.++.++.
T Consensus 67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 4789999999999999999999984 889999999999997653
No 308
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=9.3e-10 Score=72.80 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=39.0
Q ss_pred CCCCCCC---CCccceEEEEECCHHHHHHHHhcCCccCCeEEEEeecC
Q 030822 1 MPKDQGS---KAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRAT 45 (171)
Q Consensus 1 i~~D~~t---g~srGfgFV~F~~~~~a~~Al~~~~~i~gr~i~v~~a~ 45 (171)
+++|+.| |++||||||+|.+.++|++||+..+.++|+.+.+..+.
T Consensus 39 ~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 39 WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSP 86 (114)
T ss_dssp CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCS
T ss_pred EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCC
Confidence 4667777 89999999999999999999998778899999887554
No 309
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2e-09 Score=69.72 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=39.2
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 2 ~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
++|+. .+||||||+|.+.++|++||+ ++..|+|+.|.|.++.++..
T Consensus 48 ~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 48 ITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp ECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred EecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 45643 479999999999999999999 47899999999999987543
No 310
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.94 E-value=1.2e-09 Score=71.32 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=39.5
Q ss_pred CCCCCCC--CCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecC
Q 030822 1 MPKDQGS--KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (171)
Q Consensus 1 i~~D~~t--g~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~ 45 (171)
|++|+.+ ++++|||||+|+++++|++|++ ++..++||.|.|.++.
T Consensus 47 i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 47 IPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp CCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 5677655 5799999999999999999999 4899999999999864
No 311
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.94 E-value=5.5e-10 Score=78.65 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=43.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||+++|||||+|.+.++|++||. ++..|+|+.|.|.++.++..
T Consensus 104 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 104 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 46788999999999999999999999998 48899999999999976543
No 312
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.93 E-value=7.1e-10 Score=70.30 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 6 GSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 6 ~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
.+|++||||||+|.+.++|++|++ ++..++|+.|.|.++.++.
T Consensus 43 ~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 43 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 389999999999999999999999 4789999999999987653
No 313
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.92 E-value=1.3e-09 Score=68.54 Aligned_cols=37 Identities=11% Similarity=0.342 Sum_probs=34.2
Q ss_pred CccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecC
Q 030822 9 AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRAT 45 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~ 45 (171)
.|||||||+|.++++|++|++. +..++||+|.|+.|.
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4899999999999999999994 789999999999883
No 314
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=9e-10 Score=72.69 Aligned_cols=46 Identities=20% Similarity=0.384 Sum_probs=39.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCcc--------CCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THEL--------GGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i--------~gr~i~v~~a~~~ 47 (171)
|++|+ +|++||||||+|.+.++|++||+. +..| .+++|.|+++.|+
T Consensus 57 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 57 ILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp EEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 46787 999999999999999999999994 6677 5788999988754
No 315
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.92 E-value=1e-10 Score=76.44 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=47.9
Q ss_pred EeCCCCCCCHHHHHHHh------------hcccceEEEEecCc-------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 106 VGRLPQEATAEDLRRYF------------SRFGRILDVYVPKR-------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 106 V~nLp~~~te~~L~~~F------------~~fG~v~~v~i~~d-------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
+.|||+.+++++|+++| ++||+|.+|.|+++ ++||+|.+.++ |.+|+..||+..+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~----A~~A~~~lng~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED----AEKAVIDLNNRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH----HHHHHHHHTTCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH----HHHHHHHHCCCEE
Confidence 67888888988888777 99999999999965 67899999999 9999999998653
No 316
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.90 E-value=1.5e-09 Score=69.37 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=39.0
Q ss_pred CCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCC
Q 030822 6 GSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (171)
Q Consensus 6 ~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~ 48 (171)
.+|++||||||+|.+.++|++|++. +..|+|+.|.|.++.++.
T Consensus 48 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 48 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 5789999999999999999999994 689999999999997653
No 317
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=1.2e-09 Score=69.13 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=55.2
Q ss_pred CCCCceEEEeCCCCC-----CCH----HHHHHHhhcccceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCCCCc
Q 030822 98 QRIGKKIFVGRLPQE-----ATA----EDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGCNRF 167 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~-----~te----~~L~~~F~~fG~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~~~ 167 (171)
.++..+|+|.-++.. +-+ .+|.+.|++||.|+.++++.|..||+|.+.++ |.+||. ||+..++.-
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~s----Al~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHS----ALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHH----HHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHH----HHHHHh-cCCeeeCCe
Confidence 345789999888743 322 67999999999999999999999999999999 999998 999877643
No 318
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.6e-09 Score=69.12 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=37.2
Q ss_pred CCccceEEEEECCHHHHHHHHhcCCccCCeEEEEeecCCCC
Q 030822 8 KAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 8 g~srGfgFV~F~~~~~a~~Al~~~~~i~gr~i~v~~a~~~~ 48 (171)
+++||||||+|++.++|++||+.+..+.|++|.|.++.++.
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQP 91 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCCC
Confidence 57999999999999999999998777899999999987653
No 319
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=4e-09 Score=68.26 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=39.3
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 2 ~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
++|+. .++|||||+|.+.++|++||+ +++.|+|+.|.|.++.++..
T Consensus 48 ~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 48 IFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp ECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred EecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 45543 499999999999999999998 47899999999999987643
No 320
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.88 E-value=9.9e-10 Score=68.13 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=33.4
Q ss_pred CCCCCccceEEEEECCHHHHHHHHhc--CCccCCe-EEEE
Q 030822 5 QGSKAHRGIGFITFASADSVENLMVD--THELGGS-TVVV 41 (171)
Q Consensus 5 ~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr-~i~v 41 (171)
+.||++||||||+|.+.++|++|++. +..++|+ +|.|
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 46899999999999999999999994 7889999 8866
No 321
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=7.9e-09 Score=67.58 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=38.1
Q ss_pred CCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 6 GSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 6 ~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
.++++||||||+|.+.++|++||+ ++..|+|+.|.|.++.++.
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 356799999999999999999997 4789999999999987653
No 322
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=3.2e-09 Score=69.63 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=38.5
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 2 PKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 2 ~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
++|+ +++||||||+|.+.++|++|++ ++..|+|+.|.|.++.++
T Consensus 62 ~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 62 IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 4564 4599999999999999999999 488999999999998765
No 323
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.82 E-value=5.3e-09 Score=68.99 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=35.5
Q ss_pred CCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCC
Q 030822 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATP 46 (171)
Q Consensus 8 g~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~ 46 (171)
+++||||||+|++.++|++||+ ++..|+||.|.|.++..
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4699999999999999999998 48899999999998864
No 324
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.81 E-value=8.8e-09 Score=83.16 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=44.4
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.||+++|||||+|.+.++|++||.. +..|+|+.|.|.++.++..
T Consensus 134 i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 134 MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred eeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 578999999999999999999999999984 7899999999999987543
No 325
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.81 E-value=2.2e-09 Score=73.73 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=39.4
Q ss_pred CCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCC
Q 030822 5 QGSKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (171)
Q Consensus 5 ~~tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~ 47 (171)
..||++||||||+|.+.++|++||.. +..|+|+.|.|.++.+.
T Consensus 86 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 86 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 46899999999999999999999994 88999999999999764
No 326
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=3.8e-09 Score=67.71 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=37.5
Q ss_pred CCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 7 SKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 7 tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
+++++|||||+|.+.++|++|++ ++..|+|+.|.|.++.++
T Consensus 52 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 52 WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 56899999999999999999998 488999999999999775
No 327
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.80 E-value=4.4e-09 Score=74.95 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=41.7
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
|++|+ +|+++|||||+|.+.++|++||+ ++..|+|+.|.|.++.+.
T Consensus 120 i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 120 VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp ECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred EEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 46787 99999999999999999999999 478999999999998764
No 328
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.79 E-value=1.8e-09 Score=72.04 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=35.9
Q ss_pred CCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecC
Q 030822 7 SKAHRGIGFITFASADSVENLMVD--THELGGSTVVVDRAT 45 (171)
Q Consensus 7 tg~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~ 45 (171)
+++++||+||+|.+.++|++|++. +..++||.|.|.++.
T Consensus 67 ~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 67 DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp TCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 678999999999999999999994 899999999999864
No 329
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.79 E-value=2.7e-09 Score=68.24 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=38.2
Q ss_pred CCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 7 SKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 7 tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
+|++||||||+|.+.++|++|++ ++..++|+.|.|.++.++.
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 67899999999999999999998 4889999999999998753
No 330
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.79 E-value=1.3e-08 Score=67.38 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=51.3
Q ss_pred CCCceEEEeCCCCCCC----------HHHHHHHhhcccceEEEEecCc----ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 99 RIGKKIFVGRLPQEAT----------AEDLRRYFSRFGRILDVYVPKR----FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~t----------e~~L~~~F~~fG~v~~v~i~~d----~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.+++.|.+.|+=.... +++|+++|++||.|.+|.|.++ ++||+|.+.++ |.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~----A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAA----AIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHH----HHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHH----HHHHHHHhCCCEE
Confidence 3567899999843222 3689999999999999999864 68999999999 9999999998653
No 331
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=8.1e-09 Score=68.02 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=37.4
Q ss_pred CccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCCCC
Q 030822 9 AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKEDD 50 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~~~ 50 (171)
.+||||||+|.+.++|++|++. +..++||+|.|.++.++...
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCS
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCc
Confidence 3899999999999999999984 78999999999999876543
No 332
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.77 E-value=8.2e-09 Score=65.26 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=31.8
Q ss_pred ccceEEEEECCHHHHHHHHhcCCccCCeEEEEeecCCCCC
Q 030822 10 HRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~~~~i~gr~i~v~~a~~~~~ 49 (171)
+||||||+|++.++|+++....+.+.|+.|.|.++.++..
T Consensus 47 srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC----
T ss_pred CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCCCc
Confidence 8999999999999999765555677899999999987643
No 333
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=2.3e-08 Score=63.95 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=36.8
Q ss_pred CCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 8 KAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 8 g~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
+++||||||+|.+.++|++||+ ++..|+|+.|.|.++.++.
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 3789999999999999999998 4789999999999997763
No 334
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=7.6e-09 Score=67.44 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=34.8
Q ss_pred ccceEEEEECCHHHHHHHHhc----CCccCCeEEEEeecCCCCC
Q 030822 10 HRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~----~~~i~gr~i~v~~a~~~~~ 49 (171)
.||||||+|++.++|++||+. +..|+||+|.|.++.++..
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~ 94 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 94 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCC
Confidence 389999999999999999983 4789999999999976643
No 335
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=2.4e-08 Score=63.27 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=36.6
Q ss_pred CccceEEEEECCHHHHHHHHh--cC-CccCCeEEEEeecCCCCC
Q 030822 9 AHRGIGFITFASADSVENLMV--DT-HELGGSTVVVDRATPKED 49 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~--~~-~~i~gr~i~v~~a~~~~~ 49 (171)
.++|||||+|.+.++|++|++ ++ ..++|+.|.|.++.++..
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 479999999999999999998 47 899999999999987643
No 336
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=3.2e-08 Score=64.11 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=34.9
Q ss_pred ccceEEEEECCHHHHHHHHhc----CCccCCeEEEEeecCCCCC
Q 030822 10 HRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~----~~~i~gr~i~v~~a~~~~~ 49 (171)
.||||||+|++.++|++|++. +..++||+|.|.++.++..
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 50 GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 389999999999999999983 5689999999999976543
No 337
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.69 E-value=1.9e-08 Score=66.40 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=35.7
Q ss_pred CccceEEEEECCHHHHHHHHhc----CCccCCeEEEEeecCCCCC
Q 030822 9 AHRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~~----~~~i~gr~i~v~~a~~~~~ 49 (171)
++||||||+|++.++|++||+. +..|+||+|.|.++..+..
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 5799999999999999999983 4579999999999976543
No 338
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.69 E-value=2.8e-08 Score=64.18 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=34.0
Q ss_pred CccceEEEEECCHHHHHHHHhc--C--CccCCeEEEEeecCCC
Q 030822 9 AHRGIGFITFASADSVENLMVD--T--HELGGSTVVVDRATPK 47 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~~--~--~~i~gr~i~v~~a~~~ 47 (171)
++||||||+|++.++|++|++. + ..|.||+|.|.++.++
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 4689999999999999999994 3 3589999999999765
No 339
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.2e-08 Score=65.65 Aligned_cols=39 Identities=13% Similarity=0.320 Sum_probs=35.4
Q ss_pred CccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
++||||||+|.+.++|++|+. ++..++|+.|.|.++.++
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 689999999999999999998 488999999999998753
No 340
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=2.5e-08 Score=63.47 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=38.6
Q ss_pred CCCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCCC
Q 030822 2 PKDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 2 ~~D~~tg~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~~ 49 (171)
+.|+.+|+ ||||+|.+.++|++||+ +++.|+|+.|.|+++.++..
T Consensus 39 ~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 39 VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCC
T ss_pred EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCC
Confidence 46777777 99999999999999999 47899999999998876543
No 341
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.68 E-value=1.8e-08 Score=63.35 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=34.9
Q ss_pred CccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCC
Q 030822 9 AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATP 46 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~ 46 (171)
++||||||+|.+.++|++|++. +..++|+.|.|.++..
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 6899999999999999999994 7899999999999854
No 342
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=3.8e-08 Score=64.32 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=35.5
Q ss_pred cceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 11 rGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
||||||+|.+.++|++||+ ++..|+|+.|.|.++.++..
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 8999999999999999998 48899999999999987643
No 343
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=5.7e-08 Score=62.29 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=36.4
Q ss_pred CccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
.+||||||+|.+.++|++||. ++..|+|+.|.|.++.++..
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 468999999999999999999 48899999999999987643
No 344
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.66 E-value=4.7e-08 Score=63.41 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=34.3
Q ss_pred ccceEEEEECCHHHHHHHHhc----CCccCCeEEEEeecCCCCC
Q 030822 10 HRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~----~~~i~gr~i~v~~a~~~~~ 49 (171)
.||||||+|++.++|++||+. +..|+||+|.|.++..+..
T Consensus 51 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 51 KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 469999999999999999994 3569999999999976533
No 345
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.66 E-value=8e-08 Score=62.09 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=36.7
Q ss_pred ccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCCCC
Q 030822 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKEDDF 51 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~~~ 51 (171)
.||||||+|.+.++|++||+ +++.|+|+.|.|.++.++....
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 37899999999999999999 4789999999999998765443
No 346
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.65 E-value=6.9e-08 Score=62.82 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=34.6
Q ss_pred ccceEEEEECCHHHHHHHHhc----CCccCCeEEEEeecCCCCC
Q 030822 10 HRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~----~~~i~gr~i~v~~a~~~~~ 49 (171)
+||||||+|++.++|++|++. +..|+|++|.|.++.++..
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 489999999999999999983 3569999999999976543
No 347
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=2.8e-08 Score=62.37 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=35.3
Q ss_pred ccceEEEEECCHHHHHHHHhcCCccCCeEEEEeecCCCCC
Q 030822 10 HRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~~~~i~gr~i~v~~a~~~~~ 49 (171)
+||||||+|.+.++|++|+...+.++|+.|.|.++.++..
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCCC
Confidence 8999999999999999887766778999999999987644
No 348
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.63 E-value=3.3e-08 Score=63.40 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=35.9
Q ss_pred CccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCC
Q 030822 9 AHRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPKE 48 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~ 48 (171)
++||||||+|.+.++|++|++. ++.|+|+.|.|.++.++.
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 4689999999999999999984 788999999999998753
No 349
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.62 E-value=3.7e-08 Score=65.83 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=36.5
Q ss_pred CccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
++||||||+|.+.++|++||+ ++..|+|+.|.|.++.++.
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 689999999999999999998 4889999999999998653
No 350
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=8.1e-08 Score=60.47 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=35.0
Q ss_pred cceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 11 rGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
||||||+|.+.++|++|++ ++..++|+.|.|.++.++..
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 7999999999999999998 47889999999999987643
No 351
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=5.1e-08 Score=64.95 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=35.1
Q ss_pred ccceEEEEECCHHHHHHHHhc----CCccCCeEEEEeecCCCCC
Q 030822 10 HRGIGFITFASADSVENLMVD----THELGGSTVVVDRATPKED 49 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~----~~~i~gr~i~v~~a~~~~~ 49 (171)
.||||||+|++.++|++|++. +..|+|++|.|.++.++..
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 489999999999999999983 4689999999999977643
No 352
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.58 E-value=7.7e-08 Score=61.64 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=34.5
Q ss_pred ccceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCC
Q 030822 10 HRGIGFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~ 47 (171)
+||||||+|.+.++|++|++. +..++|+.|.|.++.++
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 489999999999999999994 78999999999998754
No 353
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=5.8e-08 Score=61.83 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=37.9
Q ss_pred CCCCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCCC
Q 030822 1 MPKDQGSKAHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKED 49 (171)
Q Consensus 1 i~~D~~tg~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~~ 49 (171)
|++|+.+|+ |||+|.+.++|++||+ ++..|+|+.|.|.++.+++.
T Consensus 48 i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 94 (96)
T 2e44_A 48 VNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEMA 94 (96)
T ss_dssp ECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCCS
T ss_pred eecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcccc
Confidence 356665554 9999999999999998 48899999999999988743
No 354
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=1.2e-07 Score=60.16 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=34.7
Q ss_pred ceEEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCCCC
Q 030822 12 GIGFITFASADSVENLMVD--THELGGSTVVVDRATPKED 49 (171)
Q Consensus 12 GfgFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~~~ 49 (171)
|||||.|.+.++|++|+++ +..+.||+|+|.+|..+.+
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 9999999999999999994 8999999999999976644
No 355
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.55 E-value=8.1e-08 Score=62.81 Aligned_cols=38 Identities=18% Similarity=0.444 Sum_probs=34.7
Q ss_pred ccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
+||||||+|.+.++|++||+ ++..|+|+.|.|.++.++
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 68999999999999999998 488999999999998754
No 356
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.55 E-value=6e-08 Score=64.15 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=33.6
Q ss_pred ccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecC
Q 030822 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRAT 45 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~ 45 (171)
+||||||+|.+.++|++|++ ++..++||.|.|.++.
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 69999999999999999999 4899999999999874
No 357
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=1.6e-07 Score=59.08 Aligned_cols=38 Identities=13% Similarity=0.331 Sum_probs=34.5
Q ss_pred cceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 11 rGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
+|||||+|.+.++|++||+ ++..++|+.|.|.++.++.
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 6799999999999999999 4889999999999997763
No 358
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=7.9e-08 Score=59.73 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=32.3
Q ss_pred ccceEEEEECCHHHHHHHHh---cCCccCCeEEEEeec
Q 030822 10 HRGIGFITFASADSVENLMV---DTHELGGSTVVVDRA 44 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~---~~~~i~gr~i~v~~a 44 (171)
+||||||+|.+.++|++|++ ++..++|+.|.|.++
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 68999999999999999998 468999999999986
No 359
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=2.3e-07 Score=58.60 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=34.5
Q ss_pred cceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 11 rGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
+|||||+|.+.++|++|++ +++.|+|+.|.|.++.++.
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 6799999999999999998 4889999999999998763
No 360
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=4.6e-08 Score=62.45 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=35.1
Q ss_pred ccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCCC
Q 030822 10 HRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~~ 48 (171)
+||||||+|.+.++|++|++ ++..+.|+.|.|.++.++.
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 58999999999999999999 4788999999999997653
No 361
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.52 E-value=1.3e-07 Score=60.42 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=34.3
Q ss_pred cceEEEEECCHHHHHHHHh--cCCccC--CeEEEEeecCCC
Q 030822 11 RGIGFITFASADSVENLMV--DTHELG--GSTVVVDRATPK 47 (171)
Q Consensus 11 rGfgFV~F~~~~~a~~Al~--~~~~i~--gr~i~v~~a~~~ 47 (171)
||||||+|.+.++|++|++ ++..|+ |+.|.|.++.++
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 8999999999999999999 478899 999999999876
No 362
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.51 E-value=1.2e-07 Score=62.03 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=34.4
Q ss_pred cceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 11 RGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 11 rGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
||||||+|.+.++|++|++ ++..++|+.|.|.++.++
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 8999999999999999998 488999999999998765
No 363
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=1.4e-07 Score=61.44 Aligned_cols=38 Identities=13% Similarity=0.333 Sum_probs=34.0
Q ss_pred ceEEEEECCHHHHHHHHhc--CCccCC-----eEEEEeecCCCCC
Q 030822 12 GIGFITFASADSVENLMVD--THELGG-----STVVVDRATPKED 49 (171)
Q Consensus 12 GfgFV~F~~~~~a~~Al~~--~~~i~g-----r~i~v~~a~~~~~ 49 (171)
|||||+|.+.++|++||+. +..|+| +.|.|.++.++..
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 9999999999999999994 678888 9999999987643
No 364
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=1.1e-07 Score=62.36 Aligned_cols=39 Identities=5% Similarity=-0.008 Sum_probs=35.1
Q ss_pred CccceEEEEECCHHHHHHHHh--cCCccCCeEEEEeecCCC
Q 030822 9 AHRGIGFITFASADSVENLMV--DTHELGGSTVVVDRATPK 47 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~~a~~~ 47 (171)
++||||||+|.+.++|++||+ ++..++|+.|.|.++...
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 478999999999999999999 488999999999998643
No 365
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.48 E-value=1.8e-07 Score=58.31 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=31.6
Q ss_pred CCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEee
Q 030822 8 KAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDR 43 (171)
Q Consensus 8 g~srGfgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~ 43 (171)
.++||||||+|.+.++|++|+. ++..++|+.|.|++
T Consensus 50 ~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 50 NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp CSSSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred cCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 3569999999999999999994 37899999999874
No 366
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.47 E-value=2.3e-07 Score=65.07 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=36.1
Q ss_pred CCccceEEEEECCHHHHHHHHhc--CCccCC--eEEEEeecCCCCC
Q 030822 8 KAHRGIGFITFASADSVENLMVD--THELGG--STVVVDRATPKED 49 (171)
Q Consensus 8 g~srGfgFV~F~~~~~a~~Al~~--~~~i~g--r~i~v~~a~~~~~ 49 (171)
++++|||||+|++.++|++|++. +..|.| +.|+|.++.++..
T Consensus 81 k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 81 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 34789999999999999999994 788855 9999999987643
No 367
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=6.5e-07 Score=59.07 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=32.2
Q ss_pred ccceEEEEECCHHHHHHHHhc--CCcc-----CCeEEEEeecCC
Q 030822 10 HRGIGFITFASADSVENLMVD--THEL-----GGSTVVVDRATP 46 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~--~~~i-----~gr~i~v~~a~~ 46 (171)
+||||||+|++.++|++|++. +.++ .|++|.|.++..
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 105 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEeccc
Confidence 489999999999999999994 6776 689999998864
No 368
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.28 E-value=8.9e-07 Score=59.76 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=35.1
Q ss_pred Cccce-EEEEECCHHHHHHHHhc--CCccCC--eEEEEeecCCCC
Q 030822 9 AHRGI-GFITFASADSVENLMVD--THELGG--STVVVDRATPKE 48 (171)
Q Consensus 9 ~srGf-gFV~F~~~~~a~~Al~~--~~~i~g--r~i~v~~a~~~~ 48 (171)
++||| |||+|.+.++|++|++. +..|.| +.|+|.++.++.
T Consensus 63 ~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 63 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 35788 99999999999999994 888888 999999998764
No 369
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.23 E-value=1.2e-06 Score=57.74 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=29.9
Q ss_pred ceEEEEECCHHHHHHHHhc--CCccCCeE-----EEEeecCCC
Q 030822 12 GIGFITFASADSVENLMVD--THELGGST-----VVVDRATPK 47 (171)
Q Consensus 12 GfgFV~F~~~~~a~~Al~~--~~~i~gr~-----i~v~~a~~~ 47 (171)
|||||+|.+.++|++||+. +..|+|+. |.|..+.++
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 9999999999999999994 78999998 666665543
No 370
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.16 E-value=1.3e-06 Score=64.98 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=33.5
Q ss_pred CccceEEEEECCHHHHHHHHhc--CCcc------------CCeEEEEeecCCC
Q 030822 9 AHRGIGFITFASADSVENLMVD--THEL------------GGSTVVVDRATPK 47 (171)
Q Consensus 9 ~srGfgFV~F~~~~~a~~Al~~--~~~i------------~gr~i~v~~a~~~ 47 (171)
.+||||||+|.+.++|+.|++. +..| +|+.|.|+||...
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 3799999999999999999984 6777 8999999999765
No 371
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.13 E-value=3.5e-06 Score=56.38 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=32.9
Q ss_pred ce-EEEEECCHHHHHHHHh--cCCccCC--eEEEEeecCCCC
Q 030822 12 GI-GFITFASADSVENLMV--DTHELGG--STVVVDRATPKE 48 (171)
Q Consensus 12 Gf-gFV~F~~~~~a~~Al~--~~~~i~g--r~i~v~~a~~~~ 48 (171)
|| |||+|.+.++|++|++ ++..|.| +.|.|.++.++.
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 86 9999999999999999 4888887 699999998764
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=8.9e-06 Score=51.11 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=32.4
Q ss_pred eEEEEECCHHHHHHHHh-cCCccCCeEEEEeecCCCC
Q 030822 13 IGFITFASADSVENLMV-DTHELGGSTVVVDRATPKE 48 (171)
Q Consensus 13 fgFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~~~~ 48 (171)
.+||+|.+.++|.+||+ ++..+.||.|+|+.+++..
T Consensus 51 ~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 51 KMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPSG 87 (91)
T ss_dssp SEEEEESSHHHHHHGGGGTTCEETTEEEEEEECCCSS
T ss_pred CEEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCCCc
Confidence 38999999999999999 5889999999999988653
No 373
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.91 E-value=9.6e-06 Score=59.29 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=42.8
Q ss_pred CCCHHHHHHHhhcccceEEEEecCc------------ceeEEecCCcccHHHHHHHHHHHhHhCC
Q 030822 112 EATAEDLRRYFSRFGRILDVYVPKR------------FWFCHLCGRSCSRSCFSKVSRNLWTAGC 164 (171)
Q Consensus 112 ~~te~~L~~~F~~fG~v~~v~i~~d------------~~fv~f~~~~~~~~~a~~Ai~~l~~~~~ 164 (171)
.-.+++|++.|++||.|.++.|+++ +.||+|.+.++ |.+|++.|||..+
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~----a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASE----THKAIQALNGRWF 200 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHH----HHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHH----HHHHHHHhcCceE
Confidence 3457899999999999999999732 57899999999 9999999999764
No 374
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.80 E-value=9.2e-05 Score=46.87 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=45.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-ceeEEecCCcccHHHHHHHHHHHh
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-FWFCHLCGRSCSRSCFSKVSRNLW 160 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-~~fv~f~~~~~~~~~a~~Ai~~l~ 160 (171)
...+-++| +.|.++...||.++|++||.| .|+.+-| -+||.|.+++. |..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDTsAlvvf~~~~~----a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDTSAFVSLSQPEQ----VQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETTEEEEECSCHHH----HHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCCeEEEEecCHHH----HHHHHHhcc
Confidence 34455666 999999999999999999964 4555544 78999999999 999998875
No 375
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=7.3e-05 Score=48.39 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=56.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcc-----cceEEEEecCcce--eEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRF-----GRILDVYVPKRFW--FCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~f-----G~v~~v~i~~d~~--fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
..++|-+.|||.++++..++.+.++| |.++.+.+..|.+ .|.|.+... |.+|.-+|+|..+.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~----AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKF----AAKMLMILNGSQFQ 88 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHH----HHHHHHHHSSEEET
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchh----hHHHHhhcCCeeec
Confidence 46899999999999999999999999 9999999999964 699999999 99999999886543
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=3.7e-05 Score=48.58 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.3
Q ss_pred EEEEECCHHHHHHHHh-cCCccCCeEEEEeecC
Q 030822 14 GFITFASADSVENLMV-DTHELGGSTVVVDRAT 45 (171)
Q Consensus 14 gFV~F~~~~~a~~Al~-~~~~i~gr~i~v~~a~ 45 (171)
+||+|.+.++|.+||+ ++..++||.|+|++..
T Consensus 61 ~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 61 MLVTFADSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 9999999999999999 5899999999998643
No 377
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=0.00014 Score=46.54 Aligned_cols=56 Identities=20% Similarity=0.083 Sum_probs=50.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhc-c----cceEEEEecCcceeEEecCCcccHHHHHHHHHH
Q 030822 99 RIGKKIFVGRLPQEATAEDLRRYFSR-F----GRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRN 158 (171)
Q Consensus 99 ~~~~~lfV~nLp~~~te~~L~~~F~~-f----G~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~ 158 (171)
....+|.|.|||+.++++.|.-+|+. - |+|.++....+.+.|+|.++.. |++.+++
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~v----a~rVL~k 66 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPAD----AERVLAQ 66 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHH----HHHHHTC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHH----HHHHhcC
Confidence 34789999999999999999999998 2 8999999888888999999999 8888877
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.60 E-value=3.6e-05 Score=56.21 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=24.5
Q ss_pred CCCCCCccceEEEEECCHHHHHHHHhc
Q 030822 4 DQGSKAHRGIGFITFASADSVENLMVD 30 (171)
Q Consensus 4 D~~tg~srGfgFV~F~~~~~a~~Al~~ 30 (171)
|..+|+++||+||+|.+.++|++|++.
T Consensus 168 ~~~~~~~~G~~fv~f~~~~~a~~a~~~ 194 (222)
T 3dxb_A 168 EEEDAEIIVKIFVEFSIASETHKAIQA 194 (222)
T ss_dssp SSTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cccCcCceeEEEEEECCHHHHHHHHHH
Confidence 456789999999999999999999994
No 379
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.38 E-value=0.00049 Score=43.25 Aligned_cols=58 Identities=12% Similarity=0.027 Sum_probs=47.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc----------ceeEEecCCcccHHHHHHHHHHHhHhC
Q 030822 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR----------FWFCHLCGRSCSRSCFSKVSRNLWTAG 163 (171)
Q Consensus 102 ~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d----------~~fv~f~~~~~~~~~a~~Ai~~l~~~~ 163 (171)
++|.|++||+++||+++.+..++...+.....+.. ++.+.|.+.++ +..-.+.++|..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~----v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQED----IILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHH----HHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHH----HHHHHHHhCCcE
Confidence 58999999999999999999999988776665432 45699999988 777777777653
No 380
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.38 E-value=0.00013 Score=56.98 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=27.0
Q ss_pred ccceEEEEECCHHHHHHHHhc--CCcc---CCe--EEEEeec
Q 030822 10 HRGIGFITFASADSVENLMVD--THEL---GGS--TVVVDRA 44 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~--~~~i---~gr--~i~v~~a 44 (171)
+||||||+|++.++|++||+. +.++ .|+ .|.+.++
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence 689999999999999999995 4444 345 4555555
No 381
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.31 E-value=0.00059 Score=43.30 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=44.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-ceeEEecCCcccHHHHHHHHHHHh
Q 030822 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-FWFCHLCGRSCSRSCFSKVSRNLW 160 (171)
Q Consensus 102 ~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-~~fv~f~~~~~~~~~a~~Ai~~l~ 160 (171)
+-++| +.|.++...||.++|++||. ..|..+-| -+||.|.+++. |..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDTsAlvvf~~~~~----a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDTSAFVSLSQPEQ----VKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETTEEEEEEEEECH----HHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCCeEEEEecCHHH----HHHHHHhcc
Confidence 44555 99999999999999999995 44555555 68999999999 999998874
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00062 Score=43.55 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=31.7
Q ss_pred ceEEEEECCHHHHHHHHhc-CCccCCeEEEEeecCCC
Q 030822 12 GIGFITFASADSVENLMVD-THELGGSTVVVDRATPK 47 (171)
Q Consensus 12 GfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a~~~ 47 (171)
+=|+|+|.+.+.|++.|+. .|.|+|-.|.|....++
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCC
Confidence 4589999999999999998 89999999999865543
No 383
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.17 E-value=0.0002 Score=49.00 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=19.8
Q ss_pred ccceEEEEECCHHHHHHHHhc
Q 030822 10 HRGIGFITFASADSVENLMVD 30 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~ 30 (171)
+||||||+|.+.++|++||..
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHH
Confidence 699999999999999999984
No 384
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.36 E-value=0.0068 Score=39.83 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=44.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCcce--eEEecCCcccHHHHHHHHHH
Q 030822 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFW--FCHLCGRSCSRSCFSKVSRN 158 (171)
Q Consensus 98 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d~~--fv~f~~~~~~~~~a~~Ai~~ 158 (171)
....+-|.|.+.|+.. -..+..+|++||.|++........ .|+|.++.+ |++|+..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~----A~rAL~k 78 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQ----ARKALSK 78 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHH----HHHHHTT
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHH----HHHHHHh
Confidence 3446889999999885 556677899999999999854333 499999999 9999865
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.20 E-value=0.004 Score=39.87 Aligned_cols=61 Identities=7% Similarity=0.046 Sum_probs=50.0
Q ss_pred CceEEEeCCCCCC-C----HHHHHHHhhcccceEEEEecCcc--eeEEecCCcccHHHHHHHHHHHhHhCCC
Q 030822 101 GKKIFVGRLPQEA-T----AEDLRRYFSRFGRILDVYVPKRF--WFCHLCGRSCSRSCFSKVSRNLWTAGCN 165 (171)
Q Consensus 101 ~~~lfV~nLp~~~-t----e~~L~~~F~~fG~v~~v~i~~d~--~fv~f~~~~~~~~~a~~Ai~~l~~~~~~ 165 (171)
.++|+|.||+..+ . .+.++++|..|+++......+.+ --|.|.+.++ |.+|-..||+...+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~----A~~AR~~Lh~~~f~ 72 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLS----AADARLRLHKTEFL 72 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTH----HHHHHHTSTTSEET
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHH----HHHHHHHhccceec
Confidence 4789999998754 2 25789999999999998888764 3599999999 99999999887543
No 386
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.72 E-value=0.0083 Score=37.96 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=41.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC----------cceeEEecCCcccHHHHHHHHHHHhHh
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK----------RFWFCHLCGRSCSRSCFSKVSRNLWTA 162 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~----------d~~fv~f~~~~~~~~~a~~Ai~~l~~~ 162 (171)
-+-+|.|+.||+.+||+++.+.+++.=++.....+. -++.|.|.+.++ ...-.+.++|.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~ed----v~~F~~~f~g~ 76 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDD----ILLFRDRFDGY 76 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHH----HHHHHHHSTTE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHH----HHHHHHHcCCc
Confidence 357899999999999999998888764443322221 145699999888 55555555443
No 387
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.66 E-value=0.0073 Score=48.84 Aligned_cols=47 Identities=17% Similarity=0.504 Sum_probs=36.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCcce---eEEecCCcc
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFW---FCHLCGRSC 147 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d~~---fv~f~~~~~ 147 (171)
..++|||. .|...++.+|.++|++||+|.++..=++++ -|+|.+.++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~ 101 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKES 101 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---C
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHH
Confidence 35889996 799999999999999999999999887755 499999998
No 388
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.64 E-value=0.045 Score=36.08 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=26.4
Q ss_pred eEEEEECC-HHHHHHHHhc----CCccCCeEEEEeec
Q 030822 13 IGFITFAS-ADSVENLMVD----THELGGSTVVVDRA 44 (171)
Q Consensus 13 fgFV~F~~-~~~a~~Al~~----~~~i~gr~i~v~~a 44 (171)
.|||.|.+ +++|..|+.. +..|.|..+.+...
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 49999999 7899999884 67888988877654
No 389
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.59 E-value=0.085 Score=34.11 Aligned_cols=31 Identities=10% Similarity=0.272 Sum_probs=27.1
Q ss_pred ceEEEEECCHHHHHHHHh--cCCccCCeEEEEe
Q 030822 12 GIGFITFASADSVENLMV--DTHELGGSTVVVD 42 (171)
Q Consensus 12 GfgFV~F~~~~~a~~Al~--~~~~i~gr~i~v~ 42 (171)
|=|+|+|.+...|-+|.- +|.+|+||+|+|.
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 349999999999999864 6999999999986
No 390
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.52 E-value=0.33 Score=39.70 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=45.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc-ceeEEecCCcccHHHHHHHHHHHhH
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR-FWFCHLCGRSCSRSCFSKVSRNLWT 161 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d-~~fv~f~~~~~~~~~a~~Ai~~l~~ 161 (171)
....++|+ +|..|...+|.++|+.||.| +|..+-| ..+|.|.+.+. |..+++.+..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt~a~V~~~~~~~----a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDTSAFVSLSQPEQ----VQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSSEEEEECSCHHH----HHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCCeEEEEECCHHH----HHHHHHHHHh
Confidence 45566666 99999999999999999964 5555544 57899999999 9989888853
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.77 E-value=0.072 Score=35.49 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=35.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcccceEEE-EecC-------------------cce--eEEecCCcccHHHHHHHHH
Q 030822 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPK-------------------RFW--FCHLCGRSCSRSCFSKVSR 157 (171)
Q Consensus 101 ~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v-~i~~-------------------d~~--fv~f~~~~~~~~~a~~Ai~ 157 (171)
..-|.|.+.|+..... +-++|++||.|.+- .+.+ ... -|+|+++.+ |.+|+.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~----A~rAL~ 80 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPAS----AVDALL 80 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHH----HHHHHT
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHH----HHHHHH
Confidence 4568888998776655 55679999999872 2211 111 389999888 887764
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.08 E-value=0.78 Score=30.50 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=31.3
Q ss_pred cceEEEEECCHHHHHHHHhc-CCccCCeEEEEeecCC
Q 030822 11 RGIGFITFASADSVENLMVD-THELGGSTVVVDRATP 46 (171)
Q Consensus 11 rGfgFV~F~~~~~a~~Al~~-~~~i~gr~i~v~~a~~ 46 (171)
..|-.|+|.++.+|++||.. +..|+|.-|-|.+..+
T Consensus 62 ~NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALLENGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECCH
T ss_pred CcEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECCH
Confidence 46889999999999999995 8999999888887653
No 393
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.90 E-value=3.1 Score=26.43 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=28.7
Q ss_pred EEEEECCHHHHHHHHhc--CCccCCeEEEEeecCCC
Q 030822 14 GFITFASADSVENLMVD--THELGGSTVVVDRATPK 47 (171)
Q Consensus 14 gFV~F~~~~~a~~Al~~--~~~i~gr~i~v~~a~~~ 47 (171)
.-|.|.++++|.+|-.. +..++|+.++|-++.+.
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 46899999999999774 67899999999988743
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=65.59 E-value=12 Score=24.35 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=28.1
Q ss_pred cceEEEEECCHHHHHHHHhc-CCccCC-eEEEEeecC
Q 030822 11 RGIGFITFASADSVENLMVD-THELGG-STVVVDRAT 45 (171)
Q Consensus 11 rGfgFV~F~~~~~a~~Al~~-~~~i~g-r~i~v~~a~ 45 (171)
..|-.|.|.++.+|++||.. +..|+| --|-|++..
T Consensus 59 ~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 59 GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 45889999999999999995 788874 566777653
No 395
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=60.75 E-value=3.5 Score=24.38 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=8.2
Q ss_pred ccceEEEEEC
Q 030822 10 HRGIGFITFA 19 (171)
Q Consensus 10 srGfgFV~F~ 19 (171)
.||||||+=.
T Consensus 13 ~KGfGFI~~~ 22 (74)
T 2k5n_A 13 DKGFGFIKDE 22 (74)
T ss_dssp TTTEEEEEES
T ss_pred CCCeEEEecC
Confidence 6999999754
No 396
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=59.27 E-value=3.8 Score=24.20 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=8.1
Q ss_pred ccceEEEEEC
Q 030822 10 HRGIGFITFA 19 (171)
Q Consensus 10 srGfgFV~F~ 19 (171)
.||||||+=.
T Consensus 11 ~KGfGFI~~~ 20 (74)
T 2kcm_A 11 AKKYGFIQGD 20 (74)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEecC
Confidence 6899999754
No 397
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=59.18 E-value=3.9 Score=23.59 Aligned_cols=9 Identities=56% Similarity=0.955 Sum_probs=7.6
Q ss_pred ccceEEEEE
Q 030822 10 HRGIGFITF 18 (171)
Q Consensus 10 srGfgFV~F 18 (171)
.||||||+=
T Consensus 12 ~kGfGFI~~ 20 (67)
T 3cam_A 12 AKGFGFITP 20 (67)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEec
Confidence 689999964
No 398
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=58.84 E-value=3.9 Score=23.41 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=7.9
Q ss_pred ccceEEEEEC
Q 030822 10 HRGIGFITFA 19 (171)
Q Consensus 10 srGfgFV~F~ 19 (171)
.||||||+=.
T Consensus 12 ~kGfGFI~~~ 21 (66)
T 1c9o_A 12 EKGYGFIEVE 21 (66)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEecC
Confidence 6899999643
No 399
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=58.23 E-value=30 Score=21.27 Aligned_cols=63 Identities=10% Similarity=-0.022 Sum_probs=52.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCcceeEEecCCcccHHHHHHHHHHHhHhCCCC
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKRFWFCHLCGRSCSRSCFSKVSRNLWTAGCNR 166 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d~~fv~f~~~~~~~~~a~~Ai~~l~~~~~~~ 166 (171)
..+-|-|-|+|..+-..++--.....|---.|..+-..+-+.|.+.++ ...||+.|-...-|.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsde----qrlaiqkllnhnnnk 73 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDE----QRLAIQKLLNHNNNK 73 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHH----HHHHHHHHEETTTTE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChH----HHHHHHHHHhcCCCE
Confidence 457788899999988888777778889888999999999999999999 999999985544443
No 400
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=57.40 E-value=4.6 Score=24.84 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=8.0
Q ss_pred CccceEEEEE
Q 030822 9 AHRGIGFITF 18 (171)
Q Consensus 9 ~srGfgFV~F 18 (171)
..||||||+-
T Consensus 18 ~~KGfGFI~~ 27 (90)
T 3ulj_A 18 VRMGFGFISM 27 (90)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEeEe
Confidence 3689999964
No 401
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=57.24 E-value=4.3 Score=23.80 Aligned_cols=9 Identities=44% Similarity=0.862 Sum_probs=7.5
Q ss_pred ccceEEEEE
Q 030822 10 HRGIGFITF 18 (171)
Q Consensus 10 srGfgFV~F 18 (171)
.||||||+=
T Consensus 12 ~kGfGFI~~ 20 (73)
T 3a0j_A 12 EKGYGFIER 20 (73)
T ss_dssp TTTEEEEEC
T ss_pred CCCEEEEec
Confidence 689999964
No 402
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=56.68 E-value=4.6 Score=24.09 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=15.1
Q ss_pred ccceEEEEECCHHHHHHHHhcCCccCCeEEEEeecCC
Q 030822 10 HRGIGFITFASADSVENLMVDTHELGGSTVVVDRATP 46 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~~~~i~gr~i~v~~a~~ 46 (171)
.||||||+=.+ .|.-|.|..+.-
T Consensus 19 ~kGfGFI~~~~--------------gg~DvFvH~s~i 41 (79)
T 1h95_A 19 RNGYGFINRND--------------TKEDVFVHQTAI 41 (79)
T ss_dssp TTTEEEEEEGG--------------GTEEEEEEGGGB
T ss_pred CCCcEEEecCC--------------CCccEEEEhHHc
Confidence 69999996432 246677776543
No 403
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=56.64 E-value=4.5 Score=23.17 Aligned_cols=10 Identities=50% Similarity=0.856 Sum_probs=8.0
Q ss_pred ccceEEEEEC
Q 030822 10 HRGIGFITFA 19 (171)
Q Consensus 10 srGfgFV~F~ 19 (171)
.||||||+=.
T Consensus 11 ~kGfGFI~~~ 20 (66)
T 1g6p_A 11 KKGYGFITKD 20 (66)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEecC
Confidence 6899999643
No 404
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=55.62 E-value=10 Score=28.08 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=28.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcccceEEEEecCc
Q 030822 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136 (171)
Q Consensus 102 ~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d 136 (171)
.-+.|+||||.++...|..++.. ..+..+.++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 45789999999999999999988 77887777643
No 405
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=54.03 E-value=5.2 Score=23.28 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.4
Q ss_pred CccceEEEEEC
Q 030822 9 AHRGIGFITFA 19 (171)
Q Consensus 9 ~srGfgFV~F~ 19 (171)
..||||||+=.
T Consensus 15 ~~kGfGFI~~~ 25 (71)
T 3i2z_B 15 ESKGFGFITPE 25 (71)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCcEEEecC
Confidence 36899999653
No 406
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=53.57 E-value=5.1 Score=29.88 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=28.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcccceEEEEecC
Q 030822 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135 (171)
Q Consensus 102 ~~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~ 135 (171)
.-+.|+||||.++...|..++..-..+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 3578999999999999999998777788887764
No 407
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=49.29 E-value=6.8 Score=23.90 Aligned_cols=8 Identities=38% Similarity=0.683 Sum_probs=6.7
Q ss_pred cceEEEEE
Q 030822 11 RGIGFITF 18 (171)
Q Consensus 11 rGfgFV~F 18 (171)
||||||+=
T Consensus 28 kGfGFI~~ 35 (88)
T 2yty_A 28 DNFGFIET 35 (88)
T ss_dssp SSEEEEEC
T ss_pred CCccEEec
Confidence 79999964
No 408
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=48.35 E-value=7.1 Score=24.28 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=7.4
Q ss_pred ccceEEEEE
Q 030822 10 HRGIGFITF 18 (171)
Q Consensus 10 srGfgFV~F 18 (171)
.||||||+=
T Consensus 27 ~KGfGFI~~ 35 (97)
T 2ytx_A 27 KEAFGFIER 35 (97)
T ss_dssp CSSEEEEEC
T ss_pred eCCceEEec
Confidence 589999964
No 409
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=48.23 E-value=4.8 Score=24.04 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=7.2
Q ss_pred ccceEEEEE
Q 030822 10 HRGIGFITF 18 (171)
Q Consensus 10 srGfgFV~F 18 (171)
.||||||+-
T Consensus 17 ~KGfGFI~~ 25 (79)
T 2ytv_A 17 KDQFGFINY 25 (79)
T ss_dssp CSSEEEESC
T ss_pred cccceeEeC
Confidence 599999953
No 410
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=48.05 E-value=7.3 Score=23.83 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=7.3
Q ss_pred cceEEEEEC
Q 030822 11 RGIGFITFA 19 (171)
Q Consensus 11 rGfgFV~F~ 19 (171)
||||||+=.
T Consensus 28 KGfGFI~~d 36 (89)
T 1wfq_A 28 TSYGFIQCS 36 (89)
T ss_dssp SSEEEEEET
T ss_pred CCeeEEecC
Confidence 899999643
No 411
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=45.82 E-value=13 Score=28.86 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhc
Q 030822 103 KIFVGRLPQEATAEDLRRYFSR 124 (171)
Q Consensus 103 ~lfV~nLp~~~te~~L~~~F~~ 124 (171)
-..|+||||+++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999888874
No 412
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=51.56 E-value=4.4 Score=23.56 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=8.0
Q ss_pred ccceEEEEEC
Q 030822 10 HRGIGFITFA 19 (171)
Q Consensus 10 srGfgFV~F~ 19 (171)
.||||||+=.
T Consensus 15 ~kGfGFI~~~ 24 (70)
T 2lss_A 15 TKNFGFIEQD 24 (70)
Confidence 6899999643
No 413
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=45.09 E-value=7.3 Score=28.59 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=28.1
Q ss_pred EEEeCCCCCCCHHHHHHHhhcccceEEEEecCc
Q 030822 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKR 136 (171)
Q Consensus 104 lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~d 136 (171)
..|+||||.++...|..++.....+..+.++..
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 378999999999999999998778888877643
No 414
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=44.66 E-value=20 Score=26.08 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=25.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcccceEEEEec
Q 030822 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 134 (171)
Q Consensus 103 ~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~ 134 (171)
-+.|+||||..+...|..++.....+..+.++
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 57899999999999998888765556666554
No 415
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=43.50 E-value=11 Score=25.39 Aligned_cols=11 Identities=55% Similarity=0.791 Sum_probs=9.0
Q ss_pred ccceEEEEECC
Q 030822 10 HRGIGFITFAS 20 (171)
Q Consensus 10 srGfgFV~F~~ 20 (171)
.||||||+-.+
T Consensus 73 ~KGfGFI~~dd 83 (147)
T 3aqq_A 73 SKGHGFITPAD 83 (147)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEeccCC
Confidence 68999998754
No 416
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=40.97 E-value=18 Score=26.25 Aligned_cols=33 Identities=12% Similarity=-0.011 Sum_probs=26.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcccceEEEEecC
Q 030822 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 135 (171)
Q Consensus 103 ~lfV~nLp~~~te~~L~~~F~~fG~v~~v~i~~ 135 (171)
-+.|+|||+..+...|..++.....+..+.++.
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 478999999999999999988765566665553
No 417
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=39.32 E-value=10 Score=23.13 Aligned_cols=11 Identities=36% Similarity=0.770 Sum_probs=8.6
Q ss_pred ccceEEEEECC
Q 030822 10 HRGIGFITFAS 20 (171)
Q Consensus 10 srGfgFV~F~~ 20 (171)
.||||||+-.+
T Consensus 17 ~KGfGFI~~~~ 27 (89)
T 1x65_A 17 RDGFGFIKCVD 27 (89)
T ss_dssp CTTBCEEEESS
T ss_pred eCCcceeecCC
Confidence 38999997654
No 418
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=37.57 E-value=18 Score=22.94 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=15.8
Q ss_pred CCCCccceEEEEECCHHHHHHH
Q 030822 6 GSKAHRGIGFITFASADSVENL 27 (171)
Q Consensus 6 ~tg~srGfgFV~F~~~~~a~~A 27 (171)
..|++.|||.| |.+.+.|.+-
T Consensus 69 G~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 69 GSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp TCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCceEEEEEEE-ECCHHHHHhh
Confidence 35788999987 7777777654
No 419
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=37.12 E-value=16 Score=22.90 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=15.7
Q ss_pred CCCCccceEEEEECCHHHHHHHH
Q 030822 6 GSKAHRGIGFITFASADSVENLM 28 (171)
Q Consensus 6 ~tg~srGfgFV~F~~~~~a~~Al 28 (171)
..|++.|||.| |.+.+.|.+--
T Consensus 60 G~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 60 GMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCceEEEEEEE-ECCHHHHHhhC
Confidence 35788999987 77777766543
No 420
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=37.03 E-value=64 Score=18.92 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=19.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhccc
Q 030822 101 GKKIFVGRLPQEATAEDLRRYFSRFG 126 (171)
Q Consensus 101 ~~~lfV~nLp~~~te~~L~~~F~~fG 126 (171)
.-.+|| |.++.+++++.....+|-
T Consensus 46 YE~m~I--l~P~l~ee~~~~~vek~~ 69 (77)
T 3zzp_A 46 YEVNIV--LNPNLDQSQLQNEKEIIQ 69 (77)
T ss_dssp EEEEEE--ECTTCCHHHHHHHHHHHH
T ss_pred eEEEEE--ECCCCCHHHHHHHHHHHH
Confidence 456888 678999999998888764
No 421
>4dqz_A Methyltransferase type 12; ligase-activating, bacterial PNKP; 2.30A {Clostridium thermocellum} PDB: 4drf_B 4e6n_B*
Probab=36.73 E-value=45 Score=23.93 Aligned_cols=55 Identities=22% Similarity=0.173 Sum_probs=35.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcccceEEE-EecCccee----------EEecCCcccHHHHHHHHHHH
Q 030822 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKRFWF----------CHLCGRSCSRSCFSKVSRNL 159 (171)
Q Consensus 101 ~~~lfV~nLp~~~te~~L~~~F~~fG~v~~v-~i~~d~~f----------v~f~~~~~~~~~a~~Ai~~l 159 (171)
.-+|-|.-||-.-.++-++++|++.|--+.+ .++.|..| ++..+..- ...|++.|
T Consensus 117 pL~~~~p~lp~rgg~~l~~rLFePLGw~V~a~~~~ld~~fp~WG~Sry~~l~L~g~~r----ladaL~hL 182 (230)
T 4dqz_A 117 PLKAKIMMLPCKGGEEIIYRLFEPLGYKVDVEGYMLDEKFPEWGKSRYYTVSLEGEVR----VRDLLNHI 182 (230)
T ss_dssp EEEEEEEEEECTTHHHHHHHHHGGGTCEEEEEEC------------CEEEEEEEEEEC----HHHHHHHH
T ss_pred ceEEEeeeeecCCcHHHHHHhhccccceEeeeecccCccCcccCCccceEEEEeeeEE----HHHHhhhh
Confidence 3467788899888889999999999965554 45666554 66666655 55565554
No 422
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=35.97 E-value=17 Score=22.82 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=14.2
Q ss_pred CCCccceEEEEECCHHHHHH
Q 030822 7 SKAHRGIGFITFASADSVEN 26 (171)
Q Consensus 7 tg~srGfgFV~F~~~~~a~~ 26 (171)
.|++.|||.| |.+.+.|.+
T Consensus 61 ~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 61 KLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp SSEEEEEEEE-CSCHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHh
Confidence 5788999987 677776654
No 423
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=34.87 E-value=15 Score=22.87 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=13.0
Q ss_pred CCCccceEEEEECCHHHHHH
Q 030822 7 SKAHRGIGFITFASADSVEN 26 (171)
Q Consensus 7 tg~srGfgFV~F~~~~~a~~ 26 (171)
.|++.|||.| |.+.+.|.+
T Consensus 62 ~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 62 KHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SSEEEEEEEE-ESHHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHh
Confidence 5788888887 555555544
No 424
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=33.94 E-value=15 Score=22.99 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=8.6
Q ss_pred HHHHHHHhhccc
Q 030822 115 AEDLRRYFSRFG 126 (171)
Q Consensus 115 e~~L~~~F~~fG 126 (171)
=..|+++|++||
T Consensus 90 I~~ire~fqKYG 101 (101)
T 4aj5_1 90 IMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 357888888887
No 425
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=33.86 E-value=27 Score=20.63 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.7
Q ss_pred ccceEEEEecCcceeEEecCCcc
Q 030822 125 FGRILDVYVPKRFWFCHLCGRSC 147 (171)
Q Consensus 125 fG~v~~v~i~~d~~fv~f~~~~~ 147 (171)
.|+|+.|...+...+|.|.+-.+
T Consensus 44 LGTI~kV~~~~e~ClV~F~D~S~ 66 (79)
T 2m0o_A 44 LGTIKKVDSAREVCLVQFEDDSQ 66 (79)
T ss_dssp EEEEEEEETTTTEEEEEETTSCE
T ss_pred eEEEEEeccCCCEEEEEEcCCCe
Confidence 39999999889999999988665
No 426
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.16 E-value=44 Score=20.24 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.8
Q ss_pred ccceEEEEECCHHHHHHHHhc
Q 030822 10 HRGIGFITFASADSVENLMVD 30 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~ 30 (171)
-+||-||++...++...++++
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTT
T ss_pred cCCEEEEEEecchhHHHHHHC
Confidence 579999999999999888875
No 427
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=29.95 E-value=34 Score=16.34 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=11.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHh
Q 030822 100 IGKKIFVGRLPQEATAEDLRRYF 122 (171)
Q Consensus 100 ~~~~lfV~nLp~~~te~~L~~~F 122 (171)
..++|+|++ +.++|+.+-
T Consensus 4 qvrtiwvgg-----tpeelkklk 21 (36)
T 2ki0_A 4 QVRTIWVGG-----TPEELKKLK 21 (36)
T ss_dssp SCCCCCBCC-----CHHHHHHHH
T ss_pred eeEEEEecC-----CHHHHHHHH
Confidence 357899998 445665543
No 428
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=29.77 E-value=13 Score=24.97 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=21.5
Q ss_pred HHHHHHhhcccceEEEEecCcceeEEec
Q 030822 116 EDLRRYFSRFGRILDVYVPKRFWFCHLC 143 (171)
Q Consensus 116 ~~L~~~F~~fG~v~~v~i~~d~~fv~f~ 143 (171)
+|+.++|...|.|.....-+.++||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CcccccccceeEEEEEECCCCeeEEeeC
Confidence 5677889999999999998999998876
No 429
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=29.52 E-value=50 Score=20.73 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=20.2
Q ss_pred ccceEEEEECCHHHHHHHHhcC
Q 030822 10 HRGIGFITFASADSVENLMVDT 31 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~~ 31 (171)
-|||=||+=..+.++.+|++..
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi 71 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGV 71 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTC
T ss_pred CceEEEEEeCCHHHHHHHHhcc
Confidence 5999999999999999999963
No 430
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=29.43 E-value=38 Score=18.85 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=18.3
Q ss_pred cceEEEEecCcceeEEecCCcc
Q 030822 126 GRILDVYVPKRFWFCHLCGRSC 147 (171)
Q Consensus 126 G~v~~v~i~~d~~fv~f~~~~~ 147 (171)
|+|+.|.-.....+|.|.+-.+
T Consensus 22 GtI~~V~~~~~~clV~F~D~s~ 43 (58)
T 4hcz_A 22 GTIKKVDSAREVCLVQFEDDSQ 43 (58)
T ss_dssp EEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEEEecCCCEEEEEEcCCCe
Confidence 8888888888888999988654
No 431
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.13 E-value=43 Score=19.20 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=17.7
Q ss_pred cceEEEEecCcceeEEecCCcc
Q 030822 126 GRILDVYVPKRFWFCHLCGRSC 147 (171)
Q Consensus 126 G~v~~v~i~~d~~fv~f~~~~~ 147 (171)
|+|..|...+...+|.|.+-.+
T Consensus 28 GtV~kV~~~~~~ClV~FeD~s~ 49 (68)
T 2e5p_A 28 GTIKKVDSAREVCLVQFEDDSQ 49 (68)
T ss_dssp EEEEEEETTTTEEEEEETTTEE
T ss_pred eEEEEEecCCcEEEEEEccCCe
Confidence 8888888888888899887543
No 432
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=25.04 E-value=36 Score=21.01 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=14.4
Q ss_pred ccceEEEEECCHHHHHHHHhcCCccCCeEEEEeecC
Q 030822 10 HRGIGFITFASADSVENLMVDTHELGGSTVVVDRAT 45 (171)
Q Consensus 10 srGfgFV~F~~~~~a~~Al~~~~~i~gr~i~v~~a~ 45 (171)
.||||||+-. -.|.-+.|..+.
T Consensus 27 ~kGfGFI~~~--------------~gg~dvfvH~s~ 48 (101)
T 2bh8_A 27 DKGFGFITPD--------------DGSKDVFVHFSA 48 (101)
T ss_dssp GGTEEEEEES--------------SSSCEEEEECCC
T ss_pred CCCCEEEEeC--------------CCCcEEEEEEEE
Confidence 4899999643 224667777554
No 433
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=24.00 E-value=42 Score=22.58 Aligned_cols=20 Identities=5% Similarity=0.268 Sum_probs=15.3
Q ss_pred CCCccceEEEEECCHHHHHHH
Q 030822 7 SKAHRGIGFITFASADSVENL 27 (171)
Q Consensus 7 tg~srGfgFV~F~~~~~a~~A 27 (171)
.|++.|||.| |.+.+.|.+-
T Consensus 64 ggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 64 GGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp SSEEEEEEEE-ESCHHHHHHH
T ss_pred CceEEEEEEE-eCCHHHHHhh
Confidence 5788999988 7777777654
No 434
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.70 E-value=54 Score=18.52 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=10.2
Q ss_pred CccceEEEEECCH
Q 030822 9 AHRGIGFITFASA 21 (171)
Q Consensus 9 ~srGfgFV~F~~~ 21 (171)
..++.|||.|+|.
T Consensus 33 ~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 33 SSKQSCLVTFEDN 45 (63)
T ss_dssp STTSEEEEEETTS
T ss_pred cCCCEEEEEEccC
Confidence 3578899999874
No 435
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=23.33 E-value=1.5e+02 Score=20.61 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=21.9
Q ss_pred ceEEEEECCHHHHHHHHhcCCccCCeEEEEe
Q 030822 12 GIGFITFASADSVENLMVDTHELGGSTVVVD 42 (171)
Q Consensus 12 GfgFV~F~~~~~a~~Al~~~~~i~gr~i~v~ 42 (171)
.-.||-|+++++|.++++.+..|. .|.|-
T Consensus 98 ~~v~il~k~p~d~~~lve~Gv~i~--~vNvG 126 (187)
T 3lfj_A 98 EKVFLLFKNIDTCKRVMDGGLPIT--TLNIG 126 (187)
T ss_dssp EEEEEEESSHHHHHHHHHTTCCCS--EEEEE
T ss_pred ceEEEEECCHHHHHHHHHcCCCCC--EEEEC
Confidence 347999999999999998766553 45444
No 436
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=21.37 E-value=50 Score=21.81 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=15.1
Q ss_pred CCCccceEEEEECCHHHHHHH
Q 030822 7 SKAHRGIGFITFASADSVENL 27 (171)
Q Consensus 7 tg~srGfgFV~F~~~~~a~~A 27 (171)
.|++.|||.| |.+.+.+.+-
T Consensus 66 ~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 66 GGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp SSEEEEEEEE-ESSHHHHHHH
T ss_pred CceEEEEEEE-eCCHHHHHhc
Confidence 5788899988 7777776653
No 437
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=20.80 E-value=1.5e+02 Score=17.92 Aligned_cols=34 Identities=15% Similarity=-0.129 Sum_probs=21.8
Q ss_pred ccceEEEEecCcc--eeEEecCCcccHHHHHHHHHHHhHh
Q 030822 125 FGRILDVYVPKRF--WFCHLCGRSCSRSCFSKVSRNLWTA 162 (171)
Q Consensus 125 fG~v~~v~i~~d~--~fv~f~~~~~~~~~a~~Ai~~l~~~ 162 (171)
+=.|.+|.+..|. +.|.+.-..+ .+.+++.|+.+
T Consensus 30 ~vtVt~V~vs~Dl~~AkVyvs~~~~----~~~~~~~L~~a 65 (95)
T 2dyj_A 30 LLTVEAVRLSKDGSVLSVYVEAFRE----EEGALRALSRA 65 (95)
T ss_dssp TCEEEEEEECTTSSEEEEEEECSSC----HHHHHHHHHHT
T ss_pred cEEEEEEEECCCCCEEEEEEEeCCC----HHHHHHHHHHh
Confidence 4588999999994 4566655444 45556666544
Done!