Query 030823
Match_columns 171
No_of_seqs 180 out of 1992
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2940 Predicted methyltransf 99.9 1.7E-24 3.7E-29 174.5 5.1 138 16-168 6-144 (325)
2 COG2226 UbiE Methylase involve 99.8 8.7E-20 1.9E-24 148.8 9.6 116 45-169 11-127 (238)
3 PF01209 Ubie_methyltran: ubiE 99.8 1.4E-18 3.1E-23 141.4 9.9 117 45-169 7-124 (233)
4 PRK10258 biotin biosynthesis p 99.7 3.3E-17 7.1E-22 133.4 12.1 109 50-169 3-111 (251)
5 PRK05785 hypothetical protein; 99.7 1.7E-16 3.6E-21 128.5 10.5 109 46-169 10-118 (226)
6 PLN02233 ubiquinone biosynthes 99.6 2.2E-15 4.9E-20 124.2 12.1 118 46-169 34-153 (261)
7 PRK11088 rrmA 23S rRNA methylt 99.6 1.9E-14 4.1E-19 119.0 13.7 112 46-169 45-159 (272)
8 TIGR02072 BioC biotin biosynth 99.5 3.3E-14 7.1E-19 113.2 10.1 103 62-170 4-107 (240)
9 TIGR02752 MenG_heptapren 2-hep 99.5 1E-13 2.2E-18 111.2 12.1 115 46-169 6-122 (231)
10 PF08241 Methyltransf_11: Meth 99.5 6.2E-14 1.3E-18 96.1 9.2 69 96-170 1-69 (95)
11 KOG1540 Ubiquinone biosynthesi 99.5 3.2E-13 6.9E-18 110.7 11.4 115 48-168 63-184 (296)
12 PF13847 Methyltransf_31: Meth 99.5 5.2E-13 1.1E-17 101.0 10.4 76 91-170 3-82 (152)
13 TIGR03587 Pse_Me-ase pseudamin 99.5 6.1E-13 1.3E-17 106.2 11.3 72 91-170 43-114 (204)
14 PF13649 Methyltransf_25: Meth 99.4 1.9E-13 4.2E-18 96.6 6.1 72 95-169 1-75 (101)
15 PRK14103 trans-aconitate 2-met 99.4 3.8E-13 8.2E-18 110.0 8.2 81 78-170 18-98 (255)
16 COG4106 Tam Trans-aconitate me 99.4 1.3E-13 2.8E-18 110.6 4.4 85 76-170 17-101 (257)
17 PF12847 Methyltransf_18: Meth 99.4 1.1E-12 2.5E-17 93.3 8.6 77 91-169 1-78 (112)
18 KOG1541 Predicted protein carb 99.4 6.6E-13 1.4E-17 106.9 7.6 90 71-169 30-120 (270)
19 PRK11036 putative S-adenosyl-L 99.4 3.1E-12 6.6E-17 104.7 11.4 113 49-170 4-121 (255)
20 PLN02244 tocopherol O-methyltr 99.4 4.1E-12 9E-17 108.5 11.4 76 90-169 117-194 (340)
21 PRK01683 trans-aconitate 2-met 99.4 2.4E-12 5.1E-17 105.1 9.2 87 74-170 16-102 (258)
22 PRK00107 gidB 16S rRNA methylt 99.3 1.3E-11 2.8E-16 97.5 11.6 76 91-170 45-121 (187)
23 PRK06202 hypothetical protein; 99.3 5.7E-12 1.2E-16 101.6 8.8 75 90-169 59-137 (232)
24 PRK15451 tRNA cmo(5)U34 methyl 99.3 2.3E-11 5.1E-16 99.3 12.4 96 67-169 36-133 (247)
25 TIGR00138 gidB 16S rRNA methyl 99.3 2.9E-11 6.3E-16 94.9 11.7 74 92-169 43-117 (181)
26 PLN02396 hexaprenyldihydroxybe 99.3 5.2E-11 1.1E-15 101.3 13.3 76 91-169 131-206 (322)
27 TIGR02021 BchM-ChlM magnesium 99.3 3.6E-11 7.7E-16 96.1 10.7 71 91-169 55-127 (219)
28 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.7E-11 3.6E-16 105.0 8.7 75 90-169 112-186 (340)
29 PTZ00098 phosphoethanolamine N 99.3 4.1E-11 8.8E-16 99.0 10.5 74 90-168 51-124 (263)
30 PRK11207 tellurite resistance 99.3 3.5E-11 7.6E-16 95.2 9.5 73 91-169 30-103 (197)
31 PRK00121 trmB tRNA (guanine-N( 99.3 1.8E-11 3.9E-16 97.3 7.5 76 91-169 40-119 (202)
32 TIGR00740 methyltransferase, p 99.3 8.9E-11 1.9E-15 95.1 11.7 77 90-169 52-130 (239)
33 COG2227 UbiG 2-polyprenyl-3-me 99.2 8.4E-12 1.8E-16 101.5 4.6 75 91-170 59-133 (243)
34 TIGR00477 tehB tellurite resis 99.2 5.7E-11 1.2E-15 93.9 8.6 73 91-169 30-102 (195)
35 PRK00216 ubiE ubiquinone/menaq 99.2 3.2E-10 7E-15 90.4 12.7 78 91-169 51-129 (239)
36 PRK06922 hypothetical protein; 99.2 4.7E-11 1E-15 109.1 8.8 76 91-169 418-495 (677)
37 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 2E-10 4.3E-15 90.7 11.4 75 91-169 39-114 (223)
38 PLN02336 phosphoethanolamine N 99.2 9.2E-11 2E-15 103.8 10.5 85 79-169 256-340 (475)
39 COG4976 Predicted methyltransf 99.2 1.9E-12 4E-17 104.9 -0.6 111 43-169 83-196 (287)
40 PRK08317 hypothetical protein; 99.2 2.4E-10 5.2E-15 90.7 11.4 77 90-169 18-95 (241)
41 PLN02585 magnesium protoporphy 99.2 2E-10 4.3E-15 97.5 11.3 74 91-169 144-220 (315)
42 smart00650 rADc Ribosomal RNA 99.2 1.4E-10 3E-15 89.5 9.3 72 91-168 13-84 (169)
43 PRK11873 arsM arsenite S-adeno 99.2 1.1E-10 2.4E-15 96.2 9.3 78 90-170 76-155 (272)
44 PRK07580 Mg-protoporphyrin IX 99.2 2.6E-10 5.7E-15 91.0 11.1 71 91-169 63-135 (230)
45 PRK15068 tRNA mo(5)U34 methylt 99.2 9.4E-11 2E-15 99.6 8.9 77 91-170 122-198 (322)
46 PF05175 MTS: Methyltransferas 99.2 5.1E-10 1.1E-14 86.6 11.6 84 79-168 21-105 (170)
47 PRK13942 protein-L-isoaspartat 99.2 3.9E-10 8.4E-15 90.4 11.0 89 76-169 63-153 (212)
48 TIGR02469 CbiT precorrin-6Y C5 99.2 5.5E-10 1.2E-14 80.3 10.8 77 91-169 19-96 (124)
49 PRK13944 protein-L-isoaspartat 99.2 4.6E-10 1E-14 89.3 11.1 77 90-169 71-150 (205)
50 PRK12335 tellurite resistance 99.1 1.6E-10 3.5E-15 96.4 8.7 73 92-170 121-193 (287)
51 PRK00274 ksgA 16S ribosomal RN 99.1 1.5E-10 3.3E-15 96.0 7.8 94 66-168 19-112 (272)
52 PF08242 Methyltransf_12: Meth 99.1 1.3E-11 2.8E-16 86.6 1.0 73 96-170 1-75 (99)
53 PRK14966 unknown domain/N5-glu 99.1 3.7E-10 7.9E-15 98.9 10.2 75 91-168 251-326 (423)
54 PF13489 Methyltransf_23: Meth 99.1 1.5E-10 3.2E-15 86.8 6.8 68 89-170 20-87 (161)
55 TIGR02081 metW methionine bios 99.1 2.8E-10 6.1E-15 89.5 8.6 69 91-169 13-83 (194)
56 TIGR00080 pimt protein-L-isoas 99.1 7.6E-10 1.6E-14 88.5 11.0 88 77-169 65-154 (215)
57 PF05401 NodS: Nodulation prot 99.1 8.6E-10 1.9E-14 87.6 10.9 75 89-170 41-115 (201)
58 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.7E-10 3.6E-15 91.1 6.5 76 91-169 16-95 (194)
59 PRK08287 cobalt-precorrin-6Y C 99.1 1E-09 2.2E-14 85.8 10.8 94 69-169 11-105 (187)
60 TIGR00537 hemK_rel_arch HemK-r 99.1 6.3E-10 1.4E-14 86.3 8.9 71 91-168 19-89 (179)
61 TIGR03534 RF_mod_PrmC protein- 99.1 1.1E-09 2.3E-14 88.4 10.1 75 90-168 86-161 (251)
62 smart00138 MeTrc Methyltransfe 99.1 9.3E-10 2E-14 91.1 9.5 79 91-169 99-211 (264)
63 PLN02336 phosphoethanolamine N 99.0 6.9E-10 1.5E-14 98.2 8.6 73 91-169 37-111 (475)
64 KOG1270 Methyltransferases [Co 99.0 3E-10 6.5E-15 93.5 5.8 70 93-169 91-166 (282)
65 PRK14896 ksgA 16S ribosomal RN 99.0 9.9E-10 2.1E-14 90.4 8.8 92 67-168 7-98 (258)
66 TIGR00452 methyltransferase, p 99.0 1.9E-09 4.1E-14 91.5 10.1 78 90-170 120-197 (314)
67 smart00828 PKS_MT Methyltransf 99.0 1.5E-09 3.3E-14 86.6 8.4 72 94-169 2-75 (224)
68 TIGR03533 L3_gln_methyl protei 99.0 2.9E-09 6.4E-14 89.0 10.5 74 91-168 121-196 (284)
69 TIGR00536 hemK_fam HemK family 99.0 3.3E-09 7.1E-14 88.4 10.6 72 93-168 116-189 (284)
70 PF07021 MetW: Methionine bios 99.0 1.3E-09 2.9E-14 86.2 7.6 69 90-168 12-82 (193)
71 PRK11705 cyclopropane fatty ac 99.0 3.4E-09 7.3E-14 92.1 10.7 71 90-169 166-236 (383)
72 PRK11805 N5-glutamine S-adenos 99.0 3.4E-09 7.4E-14 89.6 10.0 72 93-168 135-208 (307)
73 PRK14967 putative methyltransf 99.0 2.4E-09 5.1E-14 86.1 8.1 73 91-168 36-108 (223)
74 PHA03411 putative methyltransf 99.0 4.2E-09 9.1E-14 87.8 9.6 69 92-168 65-133 (279)
75 PF03848 TehB: Tellurite resis 99.0 4.2E-09 9.1E-14 83.6 9.0 73 91-169 30-102 (192)
76 TIGR03438 probable methyltrans 99.0 6.2E-09 1.3E-13 87.6 10.5 70 90-160 62-133 (301)
77 PRK15001 SAM-dependent 23S rib 99.0 3.3E-09 7.3E-14 92.0 9.1 75 92-168 229-305 (378)
78 TIGR00406 prmA ribosomal prote 98.9 8.4E-09 1.8E-13 86.2 10.9 76 89-170 157-234 (288)
79 PRK00312 pcm protein-L-isoaspa 98.9 1E-08 2.2E-13 81.6 10.9 88 75-169 64-152 (212)
80 PRK09489 rsmC 16S ribosomal RN 98.9 3.8E-09 8.3E-14 90.6 8.9 72 92-168 197-268 (342)
81 PRK10901 16S rRNA methyltransf 98.9 4E-09 8.8E-14 92.7 9.1 93 71-168 226-320 (427)
82 PF13659 Methyltransf_26: Meth 98.9 2.1E-09 4.5E-14 77.1 6.0 72 93-168 2-77 (117)
83 PRK03522 rumB 23S rRNA methylu 98.9 4.1E-09 8.9E-14 89.1 8.6 73 91-168 173-247 (315)
84 PRK09328 N5-glutamine S-adenos 98.9 1E-08 2.2E-13 84.1 10.7 76 90-168 107-182 (275)
85 PRK14121 tRNA (guanine-N(7)-)- 98.9 3.7E-09 8E-14 91.9 8.3 76 91-169 122-200 (390)
86 KOG3010 Methyltransferase [Gen 98.9 2.3E-09 5E-14 87.4 6.5 73 91-168 33-107 (261)
87 TIGR01177 conserved hypothetic 98.9 6.6E-09 1.4E-13 88.3 9.6 91 71-168 164-255 (329)
88 TIGR00755 ksgA dimethyladenosi 98.9 7.2E-09 1.6E-13 84.9 9.4 92 67-168 7-101 (253)
89 KOG4300 Predicted methyltransf 98.9 2.2E-09 4.9E-14 85.9 6.1 74 92-168 77-152 (252)
90 PHA03412 putative methyltransf 98.9 6.7E-09 1.5E-13 84.9 9.0 69 92-168 50-121 (241)
91 PRK04266 fibrillarin; Provisio 98.9 1.1E-08 2.5E-13 83.0 10.1 74 90-168 71-148 (226)
92 PRK13168 rumA 23S rRNA m(5)U19 98.9 8E-09 1.7E-13 91.2 9.9 74 90-168 296-374 (443)
93 PRK14968 putative methyltransf 98.9 2E-08 4.2E-13 77.5 10.4 76 90-168 22-97 (188)
94 COG2230 Cfa Cyclopropane fatty 98.9 1.1E-08 2.4E-13 85.5 9.3 74 89-169 70-145 (283)
95 PRK13943 protein-L-isoaspartat 98.9 1.4E-08 3.1E-13 86.5 10.0 76 90-168 79-156 (322)
96 PRK00377 cbiT cobalt-precorrin 98.9 2.4E-08 5.2E-13 78.9 10.0 76 90-168 39-118 (198)
97 COG2890 HemK Methylase of poly 98.8 1.8E-08 4E-13 84.2 9.3 70 94-168 113-183 (280)
98 KOG1271 Methyltransferases [Ge 98.8 1.7E-08 3.6E-13 79.6 8.4 74 90-166 66-141 (227)
99 PF02353 CMAS: Mycolic acid cy 98.8 1.2E-08 2.7E-13 85.0 8.2 82 79-169 52-135 (273)
100 COG4123 Predicted O-methyltran 98.8 1E-08 2.3E-13 84.2 7.4 76 92-168 45-122 (248)
101 PRK01544 bifunctional N5-gluta 98.8 2.4E-08 5.2E-13 89.7 10.3 73 92-168 139-213 (506)
102 PTZ00338 dimethyladenosine tra 98.8 1.5E-08 3.3E-13 85.3 8.2 94 68-168 15-108 (294)
103 PRK07402 precorrin-6B methylas 98.8 4.4E-08 9.5E-13 77.1 10.3 91 72-167 23-115 (196)
104 TIGR01983 UbiG ubiquinone bios 98.8 3.6E-08 7.9E-13 78.4 9.9 74 91-169 45-120 (224)
105 TIGR03704 PrmC_rel_meth putati 98.8 2.9E-08 6.3E-13 81.6 9.2 72 92-168 87-160 (251)
106 TIGR03840 TMPT_Se_Te thiopurin 98.8 3.9E-08 8.5E-13 79.1 9.6 77 91-169 34-121 (213)
107 PRK00517 prmA ribosomal protei 98.8 5E-08 1.1E-12 79.9 10.2 71 89-169 117-187 (250)
108 TIGR00563 rsmB ribosomal RNA s 98.8 3E-08 6.5E-13 87.1 8.7 92 72-168 221-316 (426)
109 PLN03075 nicotianamine synthas 98.8 5.3E-08 1.1E-12 82.0 9.7 78 91-170 123-204 (296)
110 COG2813 RsmC 16S RNA G1207 met 98.8 3.7E-08 8E-13 82.8 8.6 73 92-168 159-231 (300)
111 PRK11188 rrmJ 23S rRNA methylt 98.8 2.7E-08 5.8E-13 79.7 7.4 67 90-169 50-125 (209)
112 PF06325 PrmA: Ribosomal prote 98.7 6.7E-08 1.4E-12 81.4 9.6 79 85-169 155-233 (295)
113 COG2263 Predicted RNA methylas 98.7 1.1E-07 2.4E-12 75.1 10.1 71 91-168 45-115 (198)
114 cd02440 AdoMet_MTases S-adenos 98.7 9.5E-08 2.1E-12 64.5 8.2 74 94-170 1-75 (107)
115 PF01135 PCMT: Protein-L-isoas 98.7 6.8E-08 1.5E-12 77.6 8.6 88 77-169 60-149 (209)
116 PRK14901 16S rRNA methyltransf 98.7 5.3E-08 1.1E-12 85.8 8.5 91 73-168 236-332 (434)
117 PRK00811 spermidine synthase; 98.7 9.3E-08 2E-12 79.9 9.2 80 90-169 75-158 (283)
118 TIGR00438 rrmJ cell division p 98.7 4.2E-08 9.2E-13 76.7 6.6 67 90-169 31-106 (188)
119 PRK05134 bifunctional 3-demeth 98.7 3.7E-07 8E-12 73.3 12.2 75 90-169 47-122 (233)
120 COG2264 PrmA Ribosomal protein 98.7 6.5E-08 1.4E-12 81.5 8.0 78 88-170 159-238 (300)
121 PTZ00146 fibrillarin; Provisio 98.7 7.4E-08 1.6E-12 81.0 8.3 99 67-169 107-210 (293)
122 PRK14903 16S rRNA methyltransf 98.7 5.7E-08 1.2E-12 85.7 8.0 92 72-168 220-314 (431)
123 PRK04457 spermidine synthase; 98.7 6.1E-08 1.3E-12 80.2 7.6 80 90-170 65-145 (262)
124 PRK14902 16S rRNA methyltransf 98.7 8E-08 1.7E-12 84.8 8.7 91 73-169 234-328 (444)
125 PRK13255 thiopurine S-methyltr 98.6 1.9E-07 4.2E-12 75.3 9.4 76 91-168 37-123 (218)
126 PRK10909 rsmD 16S rRNA m(2)G96 98.6 1.7E-07 3.6E-12 74.8 8.9 94 70-168 33-128 (199)
127 TIGR02716 C20_methyl_CrtF C-20 98.6 1.7E-07 3.7E-12 78.6 9.4 74 90-169 148-223 (306)
128 TIGR00479 rumA 23S rRNA (uraci 98.6 1.5E-07 3.2E-12 82.7 9.1 87 77-168 276-369 (431)
129 TIGR00446 nop2p NOL1/NOP2/sun 98.6 1E-07 2.2E-12 78.8 7.3 76 90-168 70-147 (264)
130 PRK14904 16S rRNA methyltransf 98.6 1.6E-07 3.4E-12 83.1 8.9 74 90-167 249-324 (445)
131 COG2242 CobL Precorrin-6B meth 98.6 5.2E-07 1.1E-11 71.2 10.5 93 72-169 17-110 (187)
132 PF08003 Methyltransf_9: Prote 98.6 1.7E-07 3.6E-12 79.1 8.2 77 91-170 115-191 (315)
133 PLN02672 methionine S-methyltr 98.6 2.1E-07 4.6E-12 89.7 9.4 76 93-168 120-210 (1082)
134 COG2518 Pcm Protein-L-isoaspar 98.6 5.5E-07 1.2E-11 72.3 10.1 86 77-169 60-146 (209)
135 PRK01581 speE spermidine synth 98.6 2.7E-07 5.9E-12 79.7 8.5 80 90-169 149-234 (374)
136 TIGR02085 meth_trns_rumB 23S r 98.6 2.9E-07 6.2E-12 79.8 8.4 73 91-168 233-307 (374)
137 PRK04148 hypothetical protein; 98.5 7.8E-07 1.7E-11 66.9 9.4 80 76-168 3-84 (134)
138 PRK03612 spermidine synthase; 98.5 7.4E-07 1.6E-11 80.4 9.2 80 90-169 296-381 (521)
139 PRK11727 23S rRNA mA1618 methy 98.5 6.8E-07 1.5E-11 76.2 8.3 76 91-168 114-196 (321)
140 PLN02366 spermidine synthase 98.4 1.7E-06 3.6E-11 73.4 9.8 80 90-169 90-173 (308)
141 TIGR00478 tly hemolysin TlyA f 98.4 2.6E-06 5.7E-11 69.3 9.8 39 91-130 75-113 (228)
142 KOG2904 Predicted methyltransf 98.4 3.3E-06 7.2E-11 70.4 10.4 95 73-168 129-229 (328)
143 PRK13256 thiopurine S-methyltr 98.4 2.9E-06 6.3E-11 69.0 9.5 76 91-168 43-131 (226)
144 PF01170 UPF0020: Putative RNA 98.4 1.8E-06 3.9E-11 67.6 7.9 95 69-168 8-113 (179)
145 KOG3420 Predicted RNA methylas 98.4 1.4E-06 3.1E-11 66.6 6.8 89 76-168 31-121 (185)
146 TIGR00417 speE spermidine synt 98.4 2.7E-06 5.9E-11 70.5 9.2 79 91-169 72-153 (270)
147 PRK15128 23S rRNA m(5)C1962 me 98.4 1.8E-06 3.9E-11 75.5 8.4 74 91-168 220-300 (396)
148 PF02390 Methyltransf_4: Putat 98.4 2.2E-06 4.7E-11 68.1 8.1 77 91-169 17-96 (195)
149 PRK05031 tRNA (uracil-5-)-meth 98.3 1.8E-06 3.8E-11 74.6 7.6 73 77-154 191-265 (362)
150 TIGR02143 trmA_only tRNA (urac 98.3 1.8E-06 3.8E-11 74.4 7.5 73 77-154 182-256 (353)
151 PRK11783 rlmL 23S rRNA m(2)G24 98.3 2.8E-06 6.1E-11 79.2 8.8 73 92-168 539-615 (702)
152 COG0030 KsgA Dimethyladenosine 98.3 5.7E-06 1.2E-10 68.6 9.3 72 91-168 30-102 (259)
153 PF03291 Pox_MCEL: mRNA cappin 98.3 5.2E-06 1.1E-10 71.1 9.2 76 91-168 62-152 (331)
154 PLN02781 Probable caffeoyl-CoA 98.3 3.9E-06 8.4E-11 68.3 8.0 76 91-169 68-152 (234)
155 PRK00050 16S rRNA m(4)C1402 me 98.2 4.5E-06 9.7E-11 70.5 7.3 74 90-167 18-96 (296)
156 PF00398 RrnaAD: Ribosomal RNA 98.2 1.5E-05 3.3E-10 65.7 10.2 94 67-168 8-104 (262)
157 KOG0820 Ribosomal RNA adenine 98.2 1.2E-05 2.5E-10 67.1 8.8 86 76-168 45-130 (315)
158 KOG1499 Protein arginine N-met 98.1 8.1E-06 1.8E-10 69.8 7.1 75 92-169 61-135 (346)
159 PF05724 TPMT: Thiopurine S-me 98.1 1.5E-05 3.3E-10 64.4 8.3 77 90-168 36-123 (218)
160 PF05185 PRMT5: PRMT5 arginine 98.0 3.2E-05 7E-10 68.7 9.6 108 47-168 152-265 (448)
161 PF01596 Methyltransf_3: O-met 98.0 7.4E-05 1.6E-09 59.9 10.8 91 74-169 30-129 (205)
162 KOG2899 Predicted methyltransf 98.0 1.9E-05 4.1E-10 64.9 7.0 44 92-135 59-102 (288)
163 PF05958 tRNA_U5-meth_tr: tRNA 98.0 3.2E-05 6.8E-10 66.6 8.9 75 76-155 180-256 (352)
164 COG0220 Predicted S-adenosylme 98.0 1.6E-05 3.5E-10 64.7 6.3 74 93-169 50-127 (227)
165 TIGR00095 RNA methyltransferas 97.9 8E-05 1.7E-09 58.8 9.4 72 92-167 50-127 (189)
166 PF00891 Methyltransf_2: O-met 97.9 4.7E-05 1E-09 61.5 8.1 69 90-170 99-167 (241)
167 COG2265 TrmA SAM-dependent met 97.9 6.6E-05 1.4E-09 66.5 9.5 72 91-167 293-368 (432)
168 PF05219 DREV: DREV methyltran 97.9 2.4E-05 5.1E-10 64.8 6.2 66 91-169 94-159 (265)
169 PLN02823 spermine synthase 97.9 6.2E-05 1.3E-09 64.6 8.8 78 91-168 103-183 (336)
170 PF05148 Methyltransf_8: Hypot 97.9 1.4E-05 3.1E-10 64.3 4.5 57 92-168 73-129 (219)
171 PF10294 Methyltransf_16: Puta 97.9 0.0001 2.2E-09 57.3 8.9 79 90-170 44-128 (173)
172 COG3963 Phospholipid N-methylt 97.9 5.7E-05 1.2E-09 59.0 7.1 71 91-168 48-124 (194)
173 PRK11783 rlmL 23S rRNA m(2)G24 97.9 6.5E-05 1.4E-09 70.1 8.6 96 69-168 169-310 (702)
174 PRK04338 N(2),N(2)-dimethylgua 97.8 6.7E-05 1.5E-09 65.4 8.1 74 92-168 58-132 (382)
175 PF09243 Rsm22: Mitochondrial 97.8 6.2E-05 1.3E-09 62.7 7.4 45 91-135 33-78 (274)
176 KOG1975 mRNA cap methyltransfe 97.8 3.6E-05 7.8E-10 65.6 5.9 78 89-167 115-202 (389)
177 PF13679 Methyltransf_32: Meth 97.8 0.00018 3.9E-09 53.9 9.1 76 90-167 24-105 (141)
178 PLN02476 O-methyltransferase 97.8 0.00013 2.9E-09 61.0 8.9 76 91-169 118-202 (278)
179 COG4122 Predicted O-methyltran 97.8 0.00012 2.7E-09 59.3 8.4 75 91-168 59-139 (219)
180 COG0500 SmtA SAM-dependent met 97.8 0.00025 5.3E-09 49.1 8.6 69 95-167 52-125 (257)
181 PRK01544 bifunctional N5-gluta 97.7 7E-05 1.5E-09 67.5 6.7 78 90-170 346-426 (506)
182 KOG2361 Predicted methyltransf 97.7 4.6E-05 9.9E-10 62.5 4.8 76 93-169 73-152 (264)
183 PF02475 Met_10: Met-10+ like- 97.6 0.00025 5.5E-09 56.7 7.8 77 89-169 99-177 (200)
184 PF09445 Methyltransf_15: RNA 97.6 8E-05 1.7E-09 57.8 4.7 70 94-168 2-76 (163)
185 PF03141 Methyltransf_29: Puta 97.6 5.4E-05 1.2E-09 67.6 4.0 69 93-168 119-188 (506)
186 KOG3045 Predicted RNA methylas 97.6 0.00016 3.5E-09 60.1 6.5 57 90-168 179-235 (325)
187 PF02384 N6_Mtase: N-6 DNA Met 97.6 0.00029 6.2E-09 59.0 8.0 92 72-168 29-132 (311)
188 TIGR01444 fkbM_fam methyltrans 97.6 0.00015 3.2E-09 53.6 5.4 42 94-135 1-42 (143)
189 PRK11760 putative 23S rRNA C24 97.6 0.00031 6.7E-09 60.5 8.0 68 90-168 210-277 (357)
190 PF02527 GidB: rRNA small subu 97.6 0.001 2.2E-08 52.5 10.3 88 79-170 33-124 (184)
191 PF05891 Methyltransf_PK: AdoM 97.6 0.00035 7.5E-09 56.5 7.6 76 91-169 55-130 (218)
192 PLN02589 caffeoyl-CoA O-methyl 97.5 0.00032 6.9E-09 57.8 7.1 76 91-169 79-164 (247)
193 KOG1661 Protein-L-isoaspartate 97.5 0.00045 9.8E-09 55.8 7.7 84 86-169 77-170 (237)
194 TIGR02987 met_A_Alw26 type II 97.5 0.00031 6.6E-09 63.3 7.3 45 91-135 31-83 (524)
195 KOG1500 Protein arginine N-met 97.5 0.00039 8.5E-09 59.9 7.4 73 92-168 178-250 (517)
196 TIGR03439 methyl_EasF probable 97.5 0.0011 2.3E-08 56.7 10.0 78 91-168 76-163 (319)
197 COG2519 GCD14 tRNA(1-methylade 97.5 0.00065 1.4E-08 56.1 8.4 74 90-167 93-169 (256)
198 PF08704 GCD14: tRNA methyltra 97.5 0.00079 1.7E-08 55.5 8.8 77 90-167 39-119 (247)
199 PF06080 DUF938: Protein of un 97.4 0.00087 1.9E-08 53.8 8.2 74 94-168 28-109 (204)
200 KOG3191 Predicted N6-DNA-methy 97.4 0.0006 1.3E-08 54.0 7.0 74 91-168 43-117 (209)
201 COG0116 Predicted N6-adenine-s 97.4 0.00053 1.2E-08 59.7 7.3 98 66-168 168-306 (381)
202 COG0421 SpeE Spermidine syntha 97.4 0.0016 3.4E-08 54.7 9.3 79 92-170 77-158 (282)
203 PRK11933 yebU rRNA (cytosine-C 97.3 0.00085 1.8E-08 60.1 8.1 94 71-167 93-189 (470)
204 PF01564 Spermine_synth: Sperm 97.3 0.001 2.3E-08 54.6 8.0 81 90-170 75-159 (246)
205 COG1041 Predicted DNA modifica 97.3 0.00069 1.5E-08 58.3 6.6 73 90-167 196-270 (347)
206 PF03602 Cons_hypoth95: Conser 97.3 0.0007 1.5E-08 53.3 6.0 75 91-167 42-120 (183)
207 PF04816 DUF633: Family of unk 97.2 0.0013 2.9E-08 52.7 7.3 71 95-170 1-75 (205)
208 KOG2187 tRNA uracil-5-methyltr 97.2 0.00065 1.4E-08 60.9 5.7 59 91-154 383-442 (534)
209 PF01739 CheR: CheR methyltran 97.2 0.002 4.4E-08 51.3 7.7 97 70-168 12-143 (196)
210 PF07091 FmrO: Ribosomal RNA m 97.1 0.0032 7E-08 51.9 8.8 75 90-168 104-178 (251)
211 PRK00536 speE spermidine synth 97.1 0.0049 1.1E-07 51.2 9.7 75 90-169 71-147 (262)
212 COG4076 Predicted RNA methylas 97.1 0.002 4.3E-08 51.5 6.8 71 93-170 34-105 (252)
213 COG0357 GidB Predicted S-adeno 97.1 0.0067 1.5E-07 49.1 9.9 73 92-170 68-144 (215)
214 KOG1331 Predicted methyltransf 97.0 0.00035 7.6E-09 58.5 2.1 68 91-170 45-112 (293)
215 PF01728 FtsJ: FtsJ-like methy 96.9 0.0012 2.6E-08 51.0 3.9 36 91-126 23-59 (181)
216 PRK10611 chemotaxis methyltran 96.9 0.0026 5.6E-08 53.6 6.0 77 92-168 116-230 (287)
217 PF08123 DOT1: Histone methyla 96.9 0.0027 5.9E-08 50.9 5.8 81 90-170 41-131 (205)
218 COG0293 FtsJ 23S rRNA methylas 96.6 0.011 2.3E-07 47.6 7.4 68 87-167 41-117 (205)
219 COG1092 Predicted SAM-dependen 96.4 0.013 2.8E-07 51.5 7.6 72 92-167 218-296 (393)
220 TIGR00006 S-adenosyl-methyltra 96.4 0.02 4.3E-07 48.7 8.3 75 90-167 19-98 (305)
221 KOG2352 Predicted spermine/spe 96.4 0.016 3.4E-07 51.9 7.8 74 90-167 46-120 (482)
222 COG4262 Predicted spermidine s 96.3 0.014 3.1E-07 50.9 6.7 78 90-167 288-371 (508)
223 PF10672 Methyltrans_SAM: S-ad 96.2 0.013 2.8E-07 49.4 6.3 75 91-167 123-201 (286)
224 TIGR00308 TRM1 tRNA(guanine-26 96.2 0.015 3.1E-07 50.8 6.8 72 93-167 46-120 (374)
225 PF12147 Methyltransf_20: Puta 96.2 0.09 1.9E-06 44.6 11.0 77 91-170 135-218 (311)
226 PF02636 Methyltransf_28: Puta 96.2 0.027 5.9E-07 46.0 7.8 58 78-135 3-70 (252)
227 COG2521 Predicted archaeal met 96.1 0.0031 6.8E-08 51.9 2.1 93 69-167 116-211 (287)
228 KOG3987 Uncharacterized conser 96.1 0.00057 1.2E-08 55.3 -2.2 43 90-134 111-153 (288)
229 COG2520 Predicted methyltransf 96.1 0.026 5.6E-07 48.7 7.6 78 89-170 186-265 (341)
230 PF03059 NAS: Nicotianamine sy 95.9 0.059 1.3E-06 45.2 8.8 79 92-170 121-201 (276)
231 PF05971 Methyltransf_10: Prot 95.9 0.035 7.5E-07 47.1 7.3 74 93-168 104-184 (299)
232 COG2384 Predicted SAM-dependen 95.8 0.066 1.4E-06 43.5 8.3 79 90-170 15-94 (226)
233 COG3897 Predicted methyltransf 95.6 0.02 4.4E-07 45.9 4.5 73 91-170 79-151 (218)
234 COG0144 Sun tRNA and rRNA cyto 95.6 0.086 1.9E-06 45.6 8.8 91 72-167 139-235 (355)
235 KOG2730 Methylase [General fun 95.5 0.039 8.4E-07 45.1 6.0 91 71-167 75-171 (263)
236 COG0742 N6-adenine-specific me 95.4 0.11 2.4E-06 41.2 8.2 75 91-167 43-120 (187)
237 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.4 0.039 8.5E-07 46.2 5.7 94 70-168 66-163 (283)
238 KOG4589 Cell division protein 95.2 0.026 5.7E-07 45.1 4.0 35 89-123 67-102 (232)
239 KOG2915 tRNA(1-methyladenosine 95.2 0.12 2.5E-06 43.6 7.9 75 90-167 104-183 (314)
240 PF07757 AdoMet_MTase: Predict 95.2 0.035 7.6E-07 40.3 4.2 32 90-123 57-88 (112)
241 KOG1269 SAM-dependent methyltr 95.2 0.033 7.2E-07 48.5 4.8 78 90-169 109-186 (364)
242 PF01269 Fibrillarin: Fibrilla 95.0 0.17 3.8E-06 41.2 8.3 89 71-167 52-149 (229)
243 PF11599 AviRa: RRNA methyltra 94.7 0.087 1.9E-06 42.9 5.7 59 76-134 34-96 (246)
244 COG1352 CheR Methylase of chem 94.6 0.15 3.3E-06 42.5 7.3 43 91-133 96-147 (268)
245 KOG1663 O-methyltransferase [S 94.6 0.19 4.2E-06 41.1 7.6 76 91-169 73-157 (237)
246 COG1565 Uncharacterized conser 94.3 0.23 5E-06 43.2 7.9 65 71-135 56-129 (370)
247 cd00315 Cyt_C5_DNA_methylase C 94.3 0.15 3.1E-06 42.5 6.4 66 94-168 2-69 (275)
248 PF01795 Methyltransf_5: MraW 93.9 0.27 5.8E-06 41.9 7.4 74 90-166 19-98 (310)
249 COG1189 Predicted rRNA methyla 93.9 0.062 1.4E-06 44.2 3.4 42 88-130 76-117 (245)
250 KOG3115 Methyltransferase-like 93.6 0.089 1.9E-06 42.6 3.7 44 93-136 62-105 (249)
251 COG1889 NOP1 Fibrillarin-like 93.2 0.42 9.1E-06 38.7 6.9 97 67-167 51-151 (231)
252 PLN02232 ubiquinone biosynthes 93.0 0.081 1.8E-06 40.3 2.6 26 144-169 27-52 (160)
253 PF01555 N6_N4_Mtase: DNA meth 93.0 0.45 9.8E-06 36.9 6.9 52 76-132 179-230 (231)
254 PRK10742 putative methyltransf 92.9 0.55 1.2E-05 38.9 7.5 73 93-167 90-170 (250)
255 COG3129 Predicted SAM-dependen 92.7 0.42 9E-06 39.6 6.4 98 68-168 56-160 (292)
256 KOG1501 Arginine N-methyltrans 91.6 0.57 1.2E-05 42.1 6.4 43 92-135 67-109 (636)
257 KOG2651 rRNA adenine N-6-methy 90.7 1.7 3.7E-05 38.4 8.3 44 91-135 153-196 (476)
258 PHA01634 hypothetical protein 90.4 2 4.3E-05 32.5 7.4 61 69-135 11-71 (156)
259 PF07942 N2227: N2227-like pro 90.3 0.85 1.9E-05 38.2 6.0 41 90-132 55-95 (270)
260 KOG3178 Hydroxyindole-O-methyl 90.3 1.4 3.1E-05 38.0 7.5 66 92-169 178-244 (342)
261 PF01234 NNMT_PNMT_TEMT: NNMT/ 89.8 0.6 1.3E-05 38.8 4.7 41 90-131 55-95 (256)
262 PRK11524 putative methyltransf 89.8 1.6 3.4E-05 36.4 7.2 45 89-135 206-250 (284)
263 PF11968 DUF3321: Putative met 89.5 1.1 2.3E-05 36.5 5.8 57 93-169 53-112 (219)
264 COG0286 HsdM Type I restrictio 89.5 1.9 4.2E-05 38.9 8.1 94 70-168 167-271 (489)
265 COG1064 AdhP Zn-dependent alco 89.2 1.4 3.1E-05 38.0 6.7 71 90-169 165-237 (339)
266 PLN02668 indole-3-acetate carb 88.8 0.5 1.1E-05 41.5 3.7 78 92-169 64-170 (386)
267 COG0275 Predicted S-adenosylme 88.7 3.4 7.3E-05 35.3 8.4 74 90-166 22-101 (314)
268 KOG1122 tRNA and rRNA cytosine 88.6 1.5 3.2E-05 39.1 6.4 76 89-168 239-319 (460)
269 PF04445 SAM_MT: Putative SAM- 88.2 2.4 5.3E-05 34.8 7.1 73 93-167 77-157 (234)
270 PF13578 Methyltransf_24: Meth 88.0 0.13 2.9E-06 35.9 -0.3 68 96-168 1-76 (106)
271 PRK13699 putative methylase; P 87.2 3.2 6.9E-05 33.6 7.3 45 89-135 161-205 (227)
272 PF05206 TRM13: Methyltransfer 87.1 1.3 2.8E-05 36.8 5.0 64 90-157 17-87 (259)
273 cd08283 FDH_like_1 Glutathione 85.5 1.9 4.2E-05 37.0 5.5 44 90-133 183-227 (386)
274 PF01861 DUF43: Protein of unk 85.4 7.3 0.00016 32.2 8.5 73 92-168 45-119 (243)
275 KOG0822 Protein kinase inhibit 84.8 2.3 5E-05 39.0 5.7 95 71-167 346-445 (649)
276 PF12692 Methyltransf_17: S-ad 84.6 2.8 6E-05 32.3 5.3 34 91-124 28-61 (160)
277 PF05050 Methyltransf_21: Meth 83.2 2.9 6.2E-05 30.7 4.9 38 97-134 1-42 (167)
278 KOG2793 Putative N2,N2-dimethy 82.2 5.8 0.00012 32.9 6.7 39 91-130 86-124 (248)
279 PF00145 DNA_methylase: C-5 cy 82.2 2.6 5.7E-05 34.6 4.8 64 94-168 2-68 (335)
280 KOG1709 Guanidinoacetate methy 81.9 14 0.00031 30.4 8.6 74 90-167 100-175 (271)
281 COG1063 Tdh Threonine dehydrog 81.7 4.1 8.8E-05 34.9 5.9 41 93-133 170-211 (350)
282 KOG1596 Fibrillarin and relate 81.0 4.3 9.3E-05 33.9 5.5 93 67-167 131-232 (317)
283 KOG0024 Sorbitol dehydrogenase 80.1 4 8.8E-05 35.3 5.2 43 91-133 169-212 (354)
284 KOG2920 Predicted methyltransf 79.9 3.1 6.8E-05 35.0 4.4 40 89-129 114-153 (282)
285 KOG4058 Uncharacterized conser 77.4 8.1 0.00018 30.0 5.7 42 90-132 71-112 (199)
286 COG4301 Uncharacterized conser 75.5 35 0.00076 28.8 9.3 61 92-153 79-143 (321)
287 PTZ00357 methyltransferase; Pr 75.5 21 0.00046 34.3 8.8 73 94-167 703-798 (1072)
288 KOG1562 Spermidine synthase [A 75.4 4.9 0.00011 34.4 4.3 80 90-169 120-203 (337)
289 PF06962 rRNA_methylase: Putat 74.7 7.4 0.00016 29.4 4.8 49 117-168 1-53 (140)
290 PF04672 Methyltransf_19: S-ad 73.8 8.4 0.00018 32.3 5.3 61 92-154 69-132 (267)
291 KOG2811 Uncharacterized conser 73.0 12 0.00027 32.9 6.3 61 93-156 184-247 (420)
292 KOG1269 SAM-dependent methyltr 73.0 2.8 6E-05 36.6 2.4 78 92-169 181-259 (364)
293 TIGR00675 dcm DNA-methyltransf 72.7 9 0.00019 32.4 5.4 65 95-168 1-66 (315)
294 PRK08267 short chain dehydroge 70.7 26 0.00056 27.8 7.5 68 94-169 3-85 (260)
295 PRK08217 fabG 3-ketoacyl-(acyl 70.4 23 0.00049 27.6 7.0 74 92-169 5-90 (253)
296 PF11899 DUF3419: Protein of u 69.7 12 0.00027 32.8 5.7 40 90-131 34-73 (380)
297 PRK09496 trkA potassium transp 69.2 56 0.0012 28.4 9.8 69 91-168 230-304 (453)
298 PRK07890 short chain dehydroge 68.3 29 0.00063 27.3 7.3 72 92-169 5-90 (258)
299 KOG1098 Putative SAM-dependent 68.1 5.1 0.00011 37.5 3.1 35 91-125 44-79 (780)
300 PF10237 N6-adenineMlase: Prob 68.0 39 0.00085 26.0 7.6 77 76-167 10-92 (162)
301 PRK09880 L-idonate 5-dehydroge 68.0 17 0.00037 30.4 6.1 43 91-133 169-212 (343)
302 COG1748 LYS9 Saccharopine dehy 66.9 31 0.00067 30.5 7.6 69 93-170 2-77 (389)
303 cd08254 hydroxyacyl_CoA_DH 6-h 66.5 31 0.00067 28.2 7.3 43 90-133 164-207 (338)
304 PRK06194 hypothetical protein; 66.4 24 0.00051 28.4 6.5 73 93-169 7-91 (287)
305 PF00106 adh_short: short chai 65.7 29 0.00064 25.2 6.4 72 94-169 2-88 (167)
306 PRK08340 glucose-1-dehydrogena 65.3 26 0.00056 27.9 6.4 70 94-169 2-84 (259)
307 cd08232 idonate-5-DH L-idonate 64.4 31 0.00066 28.5 6.9 43 91-133 165-208 (339)
308 PF02254 TrkA_N: TrkA-N domain 63.9 16 0.00035 25.4 4.5 60 100-168 4-69 (116)
309 PRK07502 cyclohexadienyl dehyd 63.4 24 0.00052 29.4 6.1 42 92-133 6-49 (307)
310 TIGR02356 adenyl_thiF thiazole 62.7 22 0.00048 28.0 5.5 32 92-124 21-54 (202)
311 PF04989 CmcI: Cephalosporin h 62.1 23 0.00049 28.5 5.4 61 91-154 32-96 (206)
312 TIGR00497 hsdM type I restrict 61.8 36 0.00079 30.6 7.3 64 70-133 196-263 (501)
313 PF07101 DUF1363: Protein of u 61.1 3.1 6.6E-05 29.7 0.2 15 95-109 6-20 (124)
314 PRK06139 short chain dehydroge 60.6 38 0.00082 28.6 6.9 73 92-169 7-92 (330)
315 COG0270 Dcm Site-specific DNA 60.6 32 0.0007 29.2 6.5 68 93-168 4-74 (328)
316 PRK08339 short chain dehydroge 60.4 55 0.0012 26.2 7.6 74 92-169 8-93 (263)
317 PRK07814 short chain dehydroge 60.2 50 0.0011 26.3 7.3 72 92-169 10-95 (263)
318 PRK05854 short chain dehydroge 60.2 73 0.0016 26.4 8.5 75 92-169 14-101 (313)
319 KOG2539 Mitochondrial/chloropl 59.9 21 0.00045 32.4 5.2 79 90-168 199-281 (491)
320 PRK05867 short chain dehydroge 59.4 39 0.00084 26.6 6.5 73 92-169 9-94 (253)
321 PRK07035 short chain dehydroge 59.4 54 0.0012 25.7 7.3 73 92-169 8-93 (252)
322 PRK12829 short chain dehydroge 59.2 50 0.0011 25.9 7.1 73 91-169 10-94 (264)
323 cd01065 NAD_bind_Shikimate_DH 59.1 52 0.0011 23.9 6.7 41 91-132 18-60 (155)
324 PRK05866 short chain dehydroge 59.1 65 0.0014 26.4 7.9 71 93-169 41-125 (293)
325 PRK09072 short chain dehydroge 59.1 58 0.0013 25.8 7.5 72 92-169 5-88 (263)
326 PLN02166 dTDP-glucose 4,6-dehy 58.8 40 0.00087 29.8 7.0 74 88-169 116-192 (436)
327 PRK06200 2,3-dihydroxy-2,3-dih 58.6 44 0.00095 26.5 6.7 38 92-132 6-47 (263)
328 PRK07063 short chain dehydroge 58.5 58 0.0013 25.7 7.3 75 92-169 7-94 (260)
329 PF02719 Polysacc_synt_2: Poly 58.1 40 0.00087 28.6 6.5 73 96-169 2-85 (293)
330 PRK07454 short chain dehydroge 58.0 63 0.0014 25.1 7.4 73 93-169 7-91 (241)
331 KOG2352 Predicted spermine/spe 57.4 7.5 0.00016 35.2 2.1 44 91-134 295-338 (482)
332 PLN02427 UDP-apiose/xylose syn 57.3 31 0.00068 29.4 5.9 75 92-169 14-94 (386)
333 COG1867 TRM1 N2,N2-dimethylgua 57.2 20 0.00043 31.5 4.6 43 92-134 53-95 (380)
334 COG5459 Predicted rRNA methyla 57.1 22 0.00047 31.5 4.8 42 92-133 114-156 (484)
335 PRK09424 pntA NAD(P) transhydr 57.1 62 0.0013 29.6 8.0 43 90-133 163-206 (509)
336 KOG2798 Putative trehalase [Ca 57.0 14 0.00031 32.0 3.6 39 91-131 150-188 (369)
337 cd08234 threonine_DH_like L-th 56.8 65 0.0014 26.3 7.6 44 90-133 158-202 (334)
338 PRK05650 short chain dehydroge 56.8 45 0.00097 26.6 6.5 70 94-169 2-85 (270)
339 COG4017 Uncharacterized protei 56.0 64 0.0014 26.2 6.9 63 89-167 42-105 (254)
340 PLN02206 UDP-glucuronate decar 55.8 48 0.001 29.4 7.0 73 89-169 116-191 (442)
341 PRK13394 3-hydroxybutyrate deh 55.7 62 0.0013 25.4 7.0 71 93-169 8-92 (262)
342 COG4798 Predicted methyltransf 55.3 26 0.00057 28.4 4.7 37 89-125 46-83 (238)
343 PRK07677 short chain dehydroge 55.0 48 0.001 26.1 6.3 38 93-132 2-42 (252)
344 PRK12823 benD 1,6-dihydroxycyc 55.0 66 0.0014 25.3 7.1 71 93-169 9-92 (260)
345 PRK08213 gluconate 5-dehydroge 54.5 80 0.0017 24.9 7.6 74 92-169 12-97 (259)
346 PRK07109 short chain dehydroge 54.1 62 0.0013 27.2 7.1 71 93-169 9-93 (334)
347 cd08245 CAD Cinnamyl alcohol d 54.0 64 0.0014 26.4 7.1 43 90-133 161-204 (330)
348 PF03492 Methyltransf_7: SAM d 53.9 10 0.00023 32.4 2.4 80 90-169 15-115 (334)
349 PRK08762 molybdopterin biosynt 53.4 41 0.00088 29.1 6.0 31 93-124 136-168 (376)
350 PRK11908 NAD-dependent epimera 53.4 30 0.00065 28.9 5.1 68 93-169 2-76 (347)
351 PRK07024 short chain dehydroge 53.3 93 0.002 24.6 7.7 72 93-169 3-86 (257)
352 PRK08703 short chain dehydroge 52.7 1.1E+02 0.0023 23.8 8.4 37 93-132 7-47 (239)
353 PF02005 TRM: N2,N2-dimethylgu 52.0 23 0.0005 31.0 4.3 70 93-165 51-125 (377)
354 PRK09291 short chain dehydroge 51.9 99 0.0022 24.1 7.7 73 93-169 3-81 (257)
355 PRK08277 D-mannonate oxidoredu 51.8 81 0.0018 25.2 7.3 72 92-169 10-95 (278)
356 PRK07231 fabG 3-ketoacyl-(acyl 51.7 83 0.0018 24.4 7.2 70 93-169 6-89 (251)
357 KOG2198 tRNA cytosine-5-methyl 51.4 68 0.0015 28.2 6.9 45 89-133 153-201 (375)
358 KOG3201 Uncharacterized conser 51.3 5.8 0.00013 31.2 0.4 42 93-134 31-73 (201)
359 KOG1099 SAM-dependent methyltr 51.1 35 0.00075 28.5 4.8 63 93-168 43-122 (294)
360 PRK07453 protochlorophyllide o 51.0 82 0.0018 26.0 7.3 72 92-169 6-91 (322)
361 PRK05872 short chain dehydroge 50.9 85 0.0018 25.7 7.3 72 92-169 9-93 (296)
362 PLN02896 cinnamyl-alcohol dehy 50.8 46 0.00099 27.9 5.8 75 90-169 8-87 (353)
363 COG0569 TrkA K+ transport syst 50.7 90 0.002 25.0 7.3 66 94-168 2-73 (225)
364 PRK08251 short chain dehydroge 50.6 1.2E+02 0.0025 23.6 8.1 75 93-169 3-89 (248)
365 COG2933 Predicted SAM-dependen 50.1 63 0.0014 27.6 6.3 34 90-125 210-243 (358)
366 cd08237 ribitol-5-phosphate_DH 49.8 38 0.00082 28.4 5.1 44 90-133 162-207 (341)
367 TIGR03201 dearomat_had 6-hydro 49.7 41 0.00089 28.2 5.4 43 90-133 165-208 (349)
368 PRK09242 tropinone reductase; 49.7 1.2E+02 0.0027 23.7 7.9 75 92-169 9-96 (257)
369 PRK06138 short chain dehydroge 49.5 74 0.0016 24.7 6.5 72 93-169 6-89 (252)
370 PRK08085 gluconate 5-dehydroge 49.2 95 0.0021 24.3 7.2 74 92-169 9-94 (254)
371 TIGR01832 kduD 2-deoxy-D-gluco 48.8 91 0.002 24.3 7.0 32 92-125 5-39 (248)
372 PRK12939 short chain dehydroge 48.5 1E+02 0.0022 23.8 7.2 74 92-169 7-92 (250)
373 cd05188 MDR Medium chain reduc 48.5 49 0.0011 25.7 5.3 43 90-133 133-176 (271)
374 PRK12475 thiamine/molybdopteri 48.3 50 0.0011 28.4 5.7 32 93-125 25-58 (338)
375 PRK12429 3-hydroxybutyrate deh 48.2 84 0.0018 24.4 6.7 73 93-169 5-89 (258)
376 PLN02253 xanthoxin dehydrogena 48.0 81 0.0018 25.2 6.7 72 93-169 19-102 (280)
377 PRK07062 short chain dehydroge 47.5 1.4E+02 0.003 23.6 7.9 75 92-169 8-95 (265)
378 PRK08643 acetoin reductase; Va 47.5 1E+02 0.0022 24.1 7.1 73 93-169 3-87 (256)
379 KOG2018 Predicted dinucleotide 47.2 98 0.0021 27.0 7.1 72 45-131 42-114 (430)
380 COG0062 Uncharacterized conser 47.2 1.5E+02 0.0032 23.8 10.4 45 68-113 23-76 (203)
381 PRK08328 hypothetical protein; 46.7 69 0.0015 25.8 6.0 31 93-124 28-60 (231)
382 PRK07774 short chain dehydroge 46.7 95 0.0021 24.1 6.8 73 93-169 7-91 (250)
383 KOG1209 1-Acyl dihydroxyaceton 46.7 45 0.00097 27.6 4.8 73 90-169 5-89 (289)
384 PRK05993 short chain dehydroge 46.6 1E+02 0.0022 24.7 7.1 67 93-169 5-84 (277)
385 TIGR03451 mycoS_dep_FDH mycoth 46.1 53 0.0012 27.6 5.5 44 90-133 175-219 (358)
386 PRK07904 short chain dehydroge 45.9 1.1E+02 0.0023 24.4 7.0 76 91-169 7-95 (253)
387 COG4096 HsdR Type I site-speci 45.5 2.7E+02 0.0059 27.3 10.4 97 70-168 166-292 (875)
388 PRK06949 short chain dehydroge 45.5 1.2E+02 0.0025 23.7 7.1 74 92-169 9-94 (258)
389 PRK15181 Vi polysaccharide bio 45.3 59 0.0013 27.3 5.7 75 92-169 15-98 (348)
390 TIGR02622 CDP_4_6_dhtase CDP-g 45.2 55 0.0012 27.4 5.5 72 93-169 5-83 (349)
391 PF05059 Orbi_VP4: Orbivirus V 44.9 34 0.00075 31.8 4.3 45 79-123 178-226 (644)
392 TIGR02818 adh_III_F_hyde S-(hy 44.6 57 0.0012 27.7 5.5 44 90-133 184-228 (368)
393 TIGR03206 benzo_BadH 2-hydroxy 44.4 99 0.0021 24.0 6.5 73 93-169 4-88 (250)
394 PRK03659 glutathione-regulated 44.1 61 0.0013 30.0 5.9 65 93-168 401-471 (601)
395 PRK06500 short chain dehydroge 44.0 1.1E+02 0.0025 23.6 6.8 70 93-169 7-88 (249)
396 cd08255 2-desacetyl-2-hydroxye 43.8 57 0.0012 25.9 5.1 44 90-133 96-140 (277)
397 PRK10669 putative cation:proto 43.6 49 0.0011 30.1 5.2 64 93-167 418-487 (558)
398 PRK06196 oxidoreductase; Provi 43.5 1.3E+02 0.0027 24.8 7.3 70 92-169 26-107 (315)
399 PRK10675 UDP-galactose-4-epime 43.3 1E+02 0.0022 25.4 6.7 69 94-169 2-81 (338)
400 PRK06197 short chain dehydroge 43.1 1.8E+02 0.0039 23.7 8.6 76 92-169 16-103 (306)
401 TIGR01381 E1_like_apg7 E1-like 43.0 31 0.00068 32.5 3.8 31 92-123 338-370 (664)
402 PF03435 Saccharop_dh: Sacchar 42.9 79 0.0017 27.1 6.1 68 95-169 1-75 (386)
403 PLN00141 Tic62-NAD(P)-related 42.7 1.1E+02 0.0024 24.2 6.6 71 91-169 16-93 (251)
404 PRK06482 short chain dehydroge 42.5 1.2E+02 0.0026 24.2 6.8 70 93-169 3-84 (276)
405 PRK07576 short chain dehydroge 42.3 1.3E+02 0.0028 23.9 7.1 74 92-169 9-94 (264)
406 TIGR01963 PHB_DH 3-hydroxybuty 42.3 1.4E+02 0.0029 23.2 7.0 72 94-169 3-86 (255)
407 TIGR02354 thiF_fam2 thiamine b 42.1 43 0.00094 26.4 4.1 31 93-124 22-54 (200)
408 PRK12548 shikimate 5-dehydroge 42.1 1.2E+02 0.0026 25.2 6.9 32 92-126 126-161 (289)
409 COG5379 BtaA S-adenosylmethion 41.9 61 0.0013 28.1 5.1 39 91-131 63-101 (414)
410 PRK05855 short chain dehydroge 41.7 1.3E+02 0.0028 26.6 7.5 74 92-169 315-400 (582)
411 KOG1252 Cystathionine beta-syn 41.6 36 0.00079 29.6 3.7 39 92-130 212-254 (362)
412 PRK09496 trkA potassium transp 41.4 1.5E+02 0.0033 25.7 7.8 65 94-168 2-72 (453)
413 TIGR00561 pntA NAD(P) transhyd 41.3 82 0.0018 28.9 6.2 42 91-133 163-205 (511)
414 PRK07688 thiamine/molybdopteri 41.3 84 0.0018 27.0 6.0 31 93-124 25-57 (339)
415 PF02086 MethyltransfD12: D12 41.2 47 0.001 26.4 4.3 41 91-133 20-60 (260)
416 PRK06153 hypothetical protein; 41.2 58 0.0013 28.8 5.0 31 93-124 177-209 (393)
417 PRK10310 PTS system galactitol 41.1 66 0.0014 22.2 4.5 14 95-109 5-18 (94)
418 PLN02740 Alcohol dehydrogenase 41.1 63 0.0014 27.5 5.3 44 90-133 197-241 (381)
419 PRK06935 2-deoxy-D-gluconate 3 40.6 1E+02 0.0022 24.3 6.1 72 92-169 15-99 (258)
420 PRK06914 short chain dehydroge 40.2 1.7E+02 0.0038 23.2 7.5 73 93-169 4-89 (280)
421 PRK10458 DNA cytosine methylas 40.2 1.4E+02 0.0031 26.9 7.5 39 93-132 89-127 (467)
422 KOG0821 Predicted ribosomal RN 39.8 1.7E+02 0.0036 24.5 7.1 36 92-128 51-86 (326)
423 KOG1430 C-3 sterol dehydrogena 39.7 74 0.0016 27.8 5.4 67 92-163 4-75 (361)
424 PF03514 GRAS: GRAS domain fam 39.7 1.1E+02 0.0024 26.6 6.6 59 91-149 110-180 (374)
425 PF03853 YjeF_N: YjeF-related 39.6 68 0.0015 24.4 4.8 48 74-122 5-61 (169)
426 PRK06953 short chain dehydroge 39.5 1.7E+02 0.0038 22.4 7.5 36 94-131 3-41 (222)
427 PRK06035 3-hydroxyacyl-CoA deh 39.4 78 0.0017 26.0 5.4 39 93-133 4-44 (291)
428 KOG2078 tRNA modification enzy 38.9 28 0.0006 31.4 2.7 50 83-134 241-290 (495)
429 cd08281 liver_ADH_like1 Zinc-d 38.8 75 0.0016 26.9 5.4 44 90-133 190-234 (371)
430 PRK06124 gluconate 5-dehydroge 38.8 1.9E+02 0.0041 22.6 7.9 75 91-169 10-96 (256)
431 PRK06182 short chain dehydroge 38.4 88 0.0019 24.9 5.5 67 93-169 4-82 (273)
432 PRK00066 ldh L-lactate dehydro 38.0 1.3E+02 0.0029 25.3 6.7 41 90-130 4-46 (315)
433 PLN02650 dihydroflavonol-4-red 38.0 1.2E+02 0.0025 25.4 6.3 75 91-169 4-85 (351)
434 PRK07417 arogenate dehydrogena 37.7 78 0.0017 25.9 5.1 38 94-133 2-41 (279)
435 PRK08507 prephenate dehydrogen 37.4 88 0.0019 25.5 5.4 40 94-133 2-43 (275)
436 PRK06181 short chain dehydroge 37.0 1.5E+02 0.0033 23.3 6.6 73 93-169 2-86 (263)
437 PRK08416 7-alpha-hydroxysteroi 37.0 2.1E+02 0.0045 22.6 7.6 74 92-169 8-95 (260)
438 COG1062 AdhC Zn-dependent alco 36.8 92 0.002 27.3 5.5 44 90-133 184-228 (366)
439 COG1086 Predicted nucleoside-d 36.6 1.7E+02 0.0037 27.3 7.4 75 93-169 251-333 (588)
440 TIGR00853 pts-lac PTS system, 36.1 54 0.0012 22.7 3.4 17 93-110 4-20 (95)
441 PRK07792 fabG 3-ketoacyl-(acyl 36.0 2.4E+02 0.0053 23.1 7.9 73 92-169 12-97 (306)
442 PRK12384 sorbitol-6-phosphate 36.0 1.9E+02 0.0042 22.6 7.1 75 93-169 3-89 (259)
443 TIGR01202 bchC 2-desacetyl-2-h 35.9 72 0.0016 26.3 4.7 42 91-132 144-186 (308)
444 cd05567 PTS_IIB_mannitol PTS_I 35.7 1.2E+02 0.0025 20.3 4.9 10 100-109 7-16 (87)
445 KOG2671 Putative RNA methylase 35.6 21 0.00046 31.3 1.5 76 90-167 207-290 (421)
446 PRK08628 short chain dehydroge 35.5 1.6E+02 0.0035 23.0 6.5 71 92-169 7-91 (258)
447 cd05565 PTS_IIB_lactose PTS_II 35.5 54 0.0012 23.1 3.3 50 98-168 5-54 (99)
448 PRK06484 short chain dehydroge 35.2 1.5E+02 0.0032 26.2 6.8 70 92-169 5-87 (520)
449 PRK08945 putative oxoacyl-(acy 35.2 2.1E+02 0.0046 22.2 8.1 40 91-131 11-52 (247)
450 PRK06701 short chain dehydroge 35.1 1.4E+02 0.003 24.4 6.2 72 92-169 46-132 (290)
451 PLN02260 probable rhamnose bio 34.6 1.3E+02 0.0027 28.0 6.5 72 92-169 6-88 (668)
452 KOG2872 Uroporphyrinogen decar 34.4 1.5E+02 0.0032 25.6 6.2 59 72-132 231-289 (359)
453 PLN02989 cinnamyl-alcohol dehy 34.4 1.3E+02 0.0027 24.7 5.9 76 92-169 5-85 (325)
454 PRK05693 short chain dehydroge 33.6 1.5E+02 0.0033 23.5 6.2 37 94-131 3-41 (274)
455 TIGR03589 PseB UDP-N-acetylglu 33.6 1.9E+02 0.0041 24.1 6.9 71 93-169 5-82 (324)
456 TIGR00518 alaDH alanine dehydr 33.2 65 0.0014 27.9 4.1 41 91-132 166-207 (370)
457 COG0300 DltE Short-chain dehyd 33.0 2.9E+02 0.0063 23.0 7.8 74 92-169 6-92 (265)
458 PRK05690 molybdopterin biosynt 33.0 1.1E+02 0.0024 24.8 5.2 31 93-124 33-65 (245)
459 PRK08644 thiamine biosynthesis 32.9 79 0.0017 25.1 4.3 31 93-124 29-61 (212)
460 PRK06101 short chain dehydroge 32.8 2.4E+02 0.0051 21.9 7.1 37 94-131 3-41 (240)
461 PLN02827 Alcohol dehydrogenase 32.8 1.1E+02 0.0023 26.2 5.4 44 90-133 192-236 (378)
462 PRK08303 short chain dehydroge 32.7 1.8E+02 0.004 24.0 6.6 31 92-124 8-41 (305)
463 PRK10538 malonic semialdehyde 32.3 2.4E+02 0.0053 21.9 7.2 69 94-169 2-82 (248)
464 PRK06130 3-hydroxybutyryl-CoA 32.2 1.3E+02 0.0027 24.9 5.6 40 92-133 4-45 (311)
465 cd05564 PTS_IIB_chitobiose_lic 32.0 67 0.0015 22.1 3.3 14 98-111 4-17 (96)
466 PRK07791 short chain dehydroge 31.8 2.6E+02 0.0056 22.7 7.3 32 92-125 6-40 (286)
467 PRK06179 short chain dehydroge 31.8 1.1E+02 0.0024 24.2 5.0 34 93-127 5-40 (270)
468 PRK06484 short chain dehydroge 31.7 1.9E+02 0.004 25.6 6.9 69 93-169 270-351 (520)
469 PF00107 ADH_zinc_N: Zinc-bind 31.7 62 0.0013 22.6 3.2 32 101-133 1-32 (130)
470 PF03141 Methyltransf_29: Puta 31.7 70 0.0015 29.3 4.1 67 91-170 365-436 (506)
471 PRK12767 carbamoyl phosphate s 31.6 68 0.0015 26.5 3.9 34 93-126 2-36 (326)
472 PRK08125 bifunctional UDP-gluc 31.4 95 0.0021 28.9 5.1 70 91-169 314-390 (660)
473 PRK08177 short chain dehydroge 31.2 2E+02 0.0044 22.0 6.4 34 94-129 3-39 (225)
474 PRK08226 short chain dehydroge 31.0 2.6E+02 0.0056 21.9 7.5 73 92-169 6-90 (263)
475 PRK07201 short chain dehydroge 30.9 2E+02 0.0043 26.3 7.1 73 93-169 372-456 (657)
476 PRK05565 fabG 3-ketoacyl-(acyl 30.9 1.4E+02 0.003 23.0 5.4 73 93-169 6-91 (247)
477 PLN03209 translocon at the inn 30.6 1.9E+02 0.0041 27.0 6.8 77 92-169 80-167 (576)
478 PLN02662 cinnamyl-alcohol dehy 30.4 2.4E+02 0.0052 22.8 7.0 75 93-169 5-84 (322)
479 cd00757 ThiF_MoeB_HesA_family 30.3 88 0.0019 24.9 4.2 31 93-124 22-54 (228)
480 PRK06172 short chain dehydroge 30.3 2.6E+02 0.0057 21.7 7.8 72 92-169 7-92 (253)
481 KOG1371 UDP-glucose 4-epimeras 30.2 2.6E+02 0.0056 24.3 7.1 70 93-169 3-85 (343)
482 PRK06113 7-alpha-hydroxysteroi 30.2 2.7E+02 0.0058 21.8 7.7 73 92-169 11-96 (255)
483 PRK06180 short chain dehydroge 30.1 2.9E+02 0.0062 22.1 7.3 38 93-131 5-44 (277)
484 KOG1227 Putative methyltransfe 29.9 36 0.00078 29.4 1.9 43 91-134 194-237 (351)
485 PRK05708 2-dehydropantoate 2-r 29.9 2.9E+02 0.0062 23.0 7.4 38 93-132 3-42 (305)
486 PRK03562 glutathione-regulated 29.9 2.3E+02 0.0051 26.3 7.4 66 92-168 400-471 (621)
487 cd01075 NAD_bind_Leu_Phe_Val_D 29.9 2.7E+02 0.0059 21.7 8.4 41 91-133 27-69 (200)
488 PRK08862 short chain dehydroge 29.2 2.8E+02 0.0061 21.7 7.5 73 92-169 5-91 (227)
489 cd08278 benzyl_alcohol_DH Benz 29.1 1.5E+02 0.0033 24.9 5.7 43 91-133 186-229 (365)
490 PRK07060 short chain dehydroge 28.9 2.2E+02 0.0048 21.8 6.2 67 92-169 9-85 (245)
491 TIGR03325 BphB_TodD cis-2,3-di 28.8 2.9E+02 0.0063 21.7 7.5 37 93-131 6-45 (262)
492 TIGR01181 dTDP_gluc_dehyt dTDP 28.5 2.1E+02 0.0045 22.9 6.2 28 95-123 2-33 (317)
493 PRK06720 hypothetical protein; 28.3 2.6E+02 0.0057 21.1 7.3 73 92-169 16-101 (169)
494 cd01493 APPBP1_RUB Ubiquitin a 28.3 4.3E+02 0.0093 23.5 9.6 30 93-124 21-53 (425)
495 PRK08293 3-hydroxybutyryl-CoA 28.1 1.6E+02 0.0034 24.2 5.4 40 93-134 4-45 (287)
496 PRK07831 short chain dehydroge 28.1 3E+02 0.0064 21.6 7.4 75 92-169 17-105 (262)
497 cd08285 NADP_ADH NADP(H)-depen 28.0 1.6E+02 0.0035 24.4 5.5 44 90-133 165-209 (351)
498 PRK09260 3-hydroxybutyryl-CoA 27.9 1.3E+02 0.0029 24.6 5.0 38 94-133 3-42 (288)
499 PRK08265 short chain dehydroge 27.9 3E+02 0.0066 21.7 7.4 68 93-169 7-88 (261)
500 PRK15116 sulfur acceptor prote 27.9 1.2E+02 0.0027 25.2 4.7 32 92-124 30-63 (268)
No 1
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.90 E-value=1.7e-24 Score=174.54 Aligned_cols=138 Identities=51% Similarity=0.835 Sum_probs=124.6
Q ss_pred HHHhcCCCccccCCCccccCCCccccCCCCCccccccHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhcccCCCe
Q 030823 16 RRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRP-NDSFVDAVAENLLDRLEDCRKTFPT 94 (171)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iFDr~~~~~~r~ra~~~~~~-~~~l~~~va~~l~~rL~~i~~~~~~ 94 (171)
-+.+||..++.+.+.+|+|+ +...+|||.+|+.||+|++|.+++ .+|++++++.+++||+.++++.|+.
T Consensus 6 ~~~st~~~~~~l~sls~~t~----------s~~~iFDR~~KR~qrdrAa~~~d~k~dylkeeig~rlaDrvfD~kk~fp~ 75 (325)
T KOG2940|consen 6 PEKSTKQAHTFLASLSFSTE----------SKVKIFDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKSFPT 75 (325)
T ss_pred chhhHHHHHHHHHHhhccch----------hhhHhhhhHHHHHHHhHHhhcchhhhhHHHHHHHHHHHHHHHHHhhhCcc
Confidence 46678889999999999886 557899999999999999998666 7999999999999999999999999
Q ss_pred EEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 95 ALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 95 vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
++|||||-|.+.++|... .+++++.+|.|..|++.++.. ..+++.+.+.++|+|.|||++++||||+++
T Consensus 76 a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~----qdp~i~~~~~v~DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 76 AFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA----QDPSIETSYFVGDEEFLDFKENSVDLIISS 144 (325)
T ss_pred eeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc----CCCceEEEEEecchhcccccccchhhhhhh
Confidence 999999999999999875 489999999999999999753 246778889999999999999999999875
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.81 E-value=8.7e-20 Score=148.79 Aligned_cols=116 Identities=19% Similarity=0.174 Sum_probs=99.7
Q ss_pred CCccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCC
Q 030823 45 SSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 45 ~~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S 124 (171)
..+..+||+.++.|++.+.+.+.+.+..|+++..+.+.. .+..+|||+|||||.++..+++..+.++|+++|+|
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s 84 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGI------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS 84 (238)
T ss_pred HHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCC------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECC
Confidence 457889999999999988777899999999988877632 26799999999999999999986667899999999
Q ss_pred HHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEec
Q 030823 125 YDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 125 ~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+.||+.++++.. ..+. ++.|+++|+|.|||+|++||+|+++.
T Consensus 85 ~~ML~~a~~k~~---~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f 127 (238)
T COG2226 85 ESMLEVAREKLK---KKGVQNVEFVVGDAENLPFPDNSFDAVTISF 127 (238)
T ss_pred HHHHHHHHHHhh---ccCccceEEEEechhhCCCCCCccCEEEeee
Confidence 999999998653 2232 38899999999999999999999864
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.77 E-value=1.4e-18 Score=141.43 Aligned_cols=117 Identities=21% Similarity=0.155 Sum_probs=59.3
Q ss_pred CCccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeC
Q 030823 45 SSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDT 123 (171)
Q Consensus 45 ~~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~ 123 (171)
..+..+||+.+..|++-+.+.+.+.+..|++.+.+.+. ..+..+|||+|||||.++..+.+. ++.++|+++|+
T Consensus 7 ~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~------~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~ 80 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLG------LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDI 80 (233)
T ss_dssp ------------------------------SHHHHHHT--------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES
T ss_pred HHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccC------CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecC
Confidence 35788999999999988777778889999987766532 245689999999999999999865 35679999999
Q ss_pred CHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 124 SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 124 S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
|++||+.|+++... ....++.++++|++.+||++++||+|++..
T Consensus 81 s~~ML~~a~~k~~~--~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 81 SPGMLEVARKKLKR--EGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp -HHHHHHHHHHHHH--TT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CHHHHHHHHHHHHh--hCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 99999999886531 112378999999999999999999999864
No 4
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.73 E-value=3.3e-17 Score=133.42 Aligned_cols=109 Identities=21% Similarity=0.203 Sum_probs=93.9
Q ss_pred cccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHH
Q 030823 50 IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK 129 (171)
Q Consensus 50 iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~ 129 (171)
..|++.++.++++++..|..++.+++.+++.+++++.. .++.+|||+|||+|.++..|... ..+|+++|+|++|++
T Consensus 3 ~~~k~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~ 78 (251)
T PRK10258 3 TVNKQAIAAAFGRAAAHYEQHAELQRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLA 78 (251)
T ss_pred ccCHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHH
Confidence 46888999999999988999999999999999888763 35689999999999999999874 479999999999999
Q ss_pred HHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 130 LCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 130 ~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
.+++.. ....++++|.+.+|+++++||+|+++.
T Consensus 79 ~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 79 QARQKD-------AADHYLAGDIESLPLATATFDLAWSNL 111 (251)
T ss_pred HHHhhC-------CCCCEEEcCcccCcCCCCcEEEEEECc
Confidence 997632 234678999999999999999999874
No 5
>PRK05785 hypothetical protein; Provisional
Probab=99.69 E-value=1.7e-16 Score=128.48 Aligned_cols=109 Identities=14% Similarity=0.073 Sum_probs=87.3
Q ss_pred CccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCH
Q 030823 46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY 125 (171)
Q Consensus 46 ~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~ 125 (171)
.+..+||+.+..|++.+...+.+....+.+++...+...+ .+..+|||+|||||.++..|.+.. ..+|+|+|+|+
T Consensus 10 ~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~----~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~ 84 (226)
T PRK05785 10 ELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYC----GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAE 84 (226)
T ss_pred HHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc----CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCH
Confidence 4678999999999986655556667777777666554321 235799999999999999998754 36999999999
Q ss_pred HHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 126 ~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+|++.|+++ ..++++|.+.+||++++||+|+++.
T Consensus 85 ~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~~ 118 (226)
T PRK05785 85 NMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSSF 118 (226)
T ss_pred HHHHHHHhc----------cceEEechhhCCCCCCCEEEEEecC
Confidence 999999752 2357899999999999999999874
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.64 E-value=2.2e-15 Score=124.22 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=83.7
Q ss_pred CccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCC
Q 030823 46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTS 124 (171)
Q Consensus 46 ~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S 124 (171)
.+..+||+.++.|++.+.....+.+..+...+.+. ..+ .+..+|||+|||||.++..+.+.. +.++|+|+|+|
T Consensus 34 ~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~-----~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S 107 (261)
T PLN02233 34 ERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSW-----SGA-KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFS 107 (261)
T ss_pred HHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHH-----hCC-CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECC
Confidence 35678999888888654333334455554433222 122 356899999999999999887653 45699999999
Q ss_pred HHHHHHHHHhhhhh-ccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 125 YDMLKLCKDAQQDA-HNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 125 ~~mL~~a~~~~~~~-~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
++|++.|+++.... .....++.++++|++.+|+++++||+|+++.
T Consensus 108 ~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 108 SEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred HHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 99999997642100 0012357889999999999999999999864
No 7
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.60 E-value=1.9e-14 Score=119.01 Aligned_cols=112 Identities=19% Similarity=0.148 Sum_probs=87.2
Q ss_pred CccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC---CcEEEEEe
Q 030823 46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG---IEKLIMMD 122 (171)
Q Consensus 46 ~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~---~~~v~gvD 122 (171)
+.....++.+...++ +.+..+.|.++.+.+++.+.+.+ .....+|||+|||+|.++..|.+..+ ...++|+|
T Consensus 45 ~~~~~d~~~~~~ar~--~fl~~g~y~~l~~~i~~~l~~~l---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD 119 (272)
T PRK11088 45 SKDPGDNKEMMQARR--AFLDAGHYQPLRDAVANLLAERL---DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLD 119 (272)
T ss_pred CCCCCcCHHHHHHHH--HHHHCCChHHHHHHHHHHHHHhc---CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEEC
Confidence 345567888876654 34456778999998888776544 23557899999999999999876432 23799999
Q ss_pred CCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 123 TSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 123 ~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+|++|+..|++. ..++.|+++|.+.+||++++||+|+++.
T Consensus 120 ~s~~~l~~A~~~-------~~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 120 ISKVAIKYAAKR-------YPQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCHHHHHHHHHh-------CCCCeEEEeecccCCCcCCceeEEEEec
Confidence 999999999752 2357789999999999999999999863
No 8
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.55 E-value=3.3e-14 Score=113.22 Aligned_cols=103 Identities=23% Similarity=0.193 Sum_probs=82.9
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHHhcc-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc
Q 030823 62 RAAWLTRPNDSFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN 140 (171)
Q Consensus 62 ra~~~~~~~~~l~~~va~~l~~rL~~i~-~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~ 140 (171)
+++..|..+..++..++..+++.+.... ....+|||+|||+|.++..+.+.++..+++++|+|++|++.+++..
T Consensus 4 ~~~~~y~~~~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~----- 78 (240)
T TIGR02072 4 KAAKTYDRHAKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL----- 78 (240)
T ss_pred hhhhchhHHHHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-----
Confidence 3444455667788888898888877543 3447899999999999999988777678999999999999987632
Q ss_pred CCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823 141 DNIETCFVVGDEEFLPLKERYACRFFVLAL 170 (171)
Q Consensus 141 ~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~ 170 (171)
. .++.++.+|.+.+|+++++||+|+++.+
T Consensus 79 ~-~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 79 S-ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred C-CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 1 2567899999999999999999998753
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.54 E-value=1e-13 Score=111.25 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=85.6
Q ss_pred CccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCC
Q 030823 46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTS 124 (171)
Q Consensus 46 ~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S 124 (171)
.+..+||+.+..+++.......+.+..+.+++...+ . ..+..+|||+|||+|.++..+.+.. +..+|+|+|+|
T Consensus 6 ~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l----~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s 79 (231)
T TIGR02752 6 RVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRM----N--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS 79 (231)
T ss_pred HHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhc----C--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC
Confidence 356789999988887544444555666554444332 1 2345799999999999999998653 45799999999
Q ss_pred HHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEec
Q 030823 125 YDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 125 ~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
++|++.+++... ..+ .++.++++|.+.+|+++++||+|+++.
T Consensus 80 ~~~~~~a~~~~~---~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 80 ENMLSVGRQKVK---DAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred HHHHHHHHHHHH---hcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 999999987542 122 257889999999999999999999853
No 10
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.53 E-value=6.2e-14 Score=96.10 Aligned_cols=69 Identities=25% Similarity=0.273 Sum_probs=56.3
Q ss_pred EEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823 96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL 170 (171)
Q Consensus 96 LDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~ 170 (171)
||+|||+|..+..|.+. +..+|+++|+|++|++.+++.. ....+.++++|.+.+||++++||+|+++.+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~-----~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRL-----KNEGVSFRQGDAEDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHT-----TTSTEEEEESBTTSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcc-----cccCchheeehHHhCccccccccccccccc
Confidence 89999999999999986 5689999999999999998753 333455899999999999999999999763
No 11
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.49 E-value=3.2e-13 Score=110.67 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=83.9
Q ss_pred cccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC------CcEEEEE
Q 030823 48 VSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG------IEKLIMM 121 (171)
Q Consensus 48 ~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~------~~~v~gv 121 (171)
..+|.+.++.|+--+-+-+.+.|.-|++..... |. ....+++||++||||.++..+.+.-+ ..+|+.+
T Consensus 63 ~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~----L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~ 136 (296)
T KOG1540|consen 63 HHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSK----LG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL 136 (296)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhc----cC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEE
Confidence 456777777776554455567777776554443 33 23458999999999999988875332 2799999
Q ss_pred eCCHHHHHHHHHhhhh-hccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 122 DTSYDMLKLCKDAQQD-AHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 122 D~S~~mL~~a~~~~~~-~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
|++++||+.++++... .......+.|+++|+|.|||++++||..++.
T Consensus 137 Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTia 184 (296)
T KOG1540|consen 137 DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIA 184 (296)
T ss_pred eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEe
Confidence 9999999999875421 0011223789999999999999999999875
No 12
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.47 E-value=5.2e-13 Score=100.98 Aligned_cols=76 Identities=22% Similarity=0.192 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCCcHHHHHHh-hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC--CCCCccceEE
Q 030823 91 TFPTALCLGGSLEAVRRLLR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP--LKERYACRFF 166 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~-~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP--f~~~sfDlV~ 166 (171)
+..+|||+|||+|.++..|. ..++..+++|+|+|++|++.+++... ..+. ++.|+++|.+.++ ++ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~---~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAK---ELGLDNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHH---HTTSTTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccc---cccccccceEEeehhccccccC-CCeeEEE
Confidence 45789999999999999999 44567899999999999999987542 2333 6899999999988 76 9999999
Q ss_pred Eecc
Q 030823 167 VLAL 170 (171)
Q Consensus 167 s~~~ 170 (171)
+..+
T Consensus 79 ~~~~ 82 (152)
T PF13847_consen 79 SNGV 82 (152)
T ss_dssp EEST
T ss_pred EcCc
Confidence 9853
No 13
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.46 E-value=6.1e-13 Score=106.21 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL 170 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~ 170 (171)
+..+|||+|||+|.++..|.+..+..+++|+|+|++|++.|++.. .++.++++|... |+++++||+|+++.+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 457899999999999999987545579999999999999997621 235667889887 999999999999764
No 14
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.44 E-value=1.9e-13 Score=96.60 Aligned_cols=72 Identities=28% Similarity=0.259 Sum_probs=57.7
Q ss_pred EEEEcCCCcHHHHHHhhcC---CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 95 ALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 95 vLDlGcGtG~l~~~L~~~~---~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
|||+|||+|..+..+.+.. +..+++++|+|++||+.+++... ..+.++.|+++|...+|+.+++||+|+++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~---~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS---EDGPKVRFVQADARDLPFSDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH---HTTTTSEEEESCTTCHHHHSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch---hcCCceEEEECCHhHCcccCCCeeEEEEcC
Confidence 7999999999999998753 33799999999999999987542 245578899999999999999999999953
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=3.8e-13 Score=110.04 Aligned_cols=81 Identities=17% Similarity=0.081 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC
Q 030823 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL 157 (171)
Q Consensus 78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf 157 (171)
...+++.+. ..+..+|||||||+|.++..|.+..+..+|+|+|+|+.|++.+++ . ++.++++|.+.++
T Consensus 18 ~~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-------~--~~~~~~~d~~~~~- 85 (255)
T PRK14103 18 FYDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-------R--GVDARTGDVRDWK- 85 (255)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-------c--CCcEEEcChhhCC-
Confidence 344544443 235589999999999999999886666799999999999999975 2 3667899998886
Q ss_pred CCCccceEEEecc
Q 030823 158 KERYACRFFVLAL 170 (171)
Q Consensus 158 ~~~sfDlV~s~~~ 170 (171)
++++||+|+++.+
T Consensus 86 ~~~~fD~v~~~~~ 98 (255)
T PRK14103 86 PKPDTDVVVSNAA 98 (255)
T ss_pred CCCCceEEEEehh
Confidence 5789999999863
No 16
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.42 E-value=1.3e-13 Score=110.63 Aligned_cols=85 Identities=21% Similarity=0.131 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC
Q 030823 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL 155 (171)
Q Consensus 76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L 155 (171)
+-+.+|..++. ......|.|+|||+|+.+..|.++.+...|+|+|.|++||+.|++ ..+++.|..+|...+
T Consensus 17 RPa~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-------rlp~~~f~~aDl~~w 87 (257)
T COG4106 17 RPARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-------RLPDATFEEADLRTW 87 (257)
T ss_pred CcHHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-------hCCCCceecccHhhc
Confidence 33455554443 235578999999999999999999999999999999999999976 456788999999988
Q ss_pred CCCCCccceEEEecc
Q 030823 156 PLKERYACRFFVLAL 170 (171)
Q Consensus 156 Pf~~~sfDlV~s~~~ 170 (171)
- ++..+|++++||+
T Consensus 88 ~-p~~~~dllfaNAv 101 (257)
T COG4106 88 K-PEQPTDLLFANAV 101 (257)
T ss_pred C-CCCccchhhhhhh
Confidence 7 5789999999985
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.41 E-value=1.1e-12 Score=93.34 Aligned_cols=77 Identities=16% Similarity=0.041 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccC-CCCCCCCCccceEEEec
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLKERYACRFFVLA 169 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~-e~LPf~~~sfDlV~s~~ 169 (171)
|..+|||||||+|.++..+.+..+..+|+++|+|++|++.+++.... .....++.++++|. ....+ .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE-EGLSDRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-TTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence 35789999999999999998855668999999999999999876521 12345788999999 44443 45699999976
No 18
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.41 E-value=6.6e-13 Score=106.92 Aligned_cols=90 Identities=20% Similarity=0.166 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEc
Q 030823 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG 150 (171)
Q Consensus 71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~ 150 (171)
-.++.+++++-++.|+.-.....-|||||||||..+..|...+ ..++|+|+|+.||+.|.+ ..++..++.+
T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~-------~e~egdlil~ 100 (270)
T KOG1541|consen 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE-------RELEGDLILC 100 (270)
T ss_pred eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH-------hhhhcCeeee
Confidence 4566677777666655333335679999999999999998743 789999999999999975 2334556777
Q ss_pred cC-CCCCCCCCccceEEEec
Q 030823 151 DE-EFLPLKERYACRFFVLA 169 (171)
Q Consensus 151 D~-e~LPf~~~sfDlV~s~~ 169 (171)
|+ +-+||++++||-|+|.+
T Consensus 101 DMG~GlpfrpGtFDg~ISIS 120 (270)
T KOG1541|consen 101 DMGEGLPFRPGTFDGVISIS 120 (270)
T ss_pred ecCCCCCCCCCccceEEEee
Confidence 75 78999999999999864
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.40 E-value=3.1e-12 Score=104.74 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=78.2
Q ss_pred ccccHHHHHHHHHHHHHhCCCC-hHHHHHHH-HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHH
Q 030823 49 SIFDRHLKRKQRDRAAWLTRPN-DSFVDAVA-ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYD 126 (171)
Q Consensus 49 ~iFDr~~~~~~r~ra~~~~~~~-~~l~~~va-~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~ 126 (171)
..||..+.++.+. + |+.. -.+...+. ..+.+.+..+..+..+|||+|||+|.++..|++. ..+|+++|+|++
T Consensus 4 ~~fd~~a~~f~~~--~--y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~ 77 (255)
T PRK11036 4 RNFDDIAEKFSRN--I--YGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAE 77 (255)
T ss_pred CChhhHHHHHHHh--c--cCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHH
Confidence 4688877555432 2 4442 23333322 2233333444455689999999999999999885 379999999999
Q ss_pred HHHHHHHhhhhhccCC--CceeEEEccCCCCC-CCCCccceEEEecc
Q 030823 127 MLKLCKDAQQDAHNDN--IETCFVVGDEEFLP-LKERYACRFFVLAL 170 (171)
Q Consensus 127 mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LP-f~~~sfDlV~s~~~ 170 (171)
|++.|++... ..+ .++.++++|.+.++ +.+++||+|+++.+
T Consensus 78 ~l~~a~~~~~---~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 78 MIQRAKQAAE---AKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred HHHHHHHHHH---hcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 9999987542 222 25778899988774 67899999998753
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=99.38 E-value=4.1e-12 Score=108.49 Aligned_cols=76 Identities=12% Similarity=0.039 Sum_probs=63.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
.+..+|||||||+|.++..|.+.+ ..+|+|+|+|+.|++.+++... ..+ .++.|+++|.+.+||++++||+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~---~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAA---AQGLSDKVSFQVADALNQPFEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEEcCcccCCCCCCCccEEEE
Confidence 456799999999999999998754 4699999999999999987542 122 2588999999999999999999998
Q ss_pred ec
Q 030823 168 LA 169 (171)
Q Consensus 168 ~~ 169 (171)
+.
T Consensus 193 ~~ 194 (340)
T PLN02244 193 ME 194 (340)
T ss_pred CC
Confidence 64
No 21
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.37 E-value=2.4e-12 Score=105.10 Aligned_cols=87 Identities=21% Similarity=0.122 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC
Q 030823 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (171)
Q Consensus 74 ~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e 153 (171)
+...+..+++.+. ..+..+|||||||+|.++..+.+..+..+|+|+|+|+.|++.+++.. .++.++.+|.+
T Consensus 16 ~~~~~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~ 86 (258)
T PRK01683 16 RTRPARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIA 86 (258)
T ss_pred hhcHHHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchh
Confidence 3345555655443 23568999999999999999987666789999999999999997632 24678889998
Q ss_pred CCCCCCCccceEEEecc
Q 030823 154 FLPLKERYACRFFVLAL 170 (171)
Q Consensus 154 ~LPf~~~sfDlV~s~~~ 170 (171)
.++ ++++||+|+++..
T Consensus 87 ~~~-~~~~fD~v~~~~~ 102 (258)
T PRK01683 87 SWQ-PPQALDLIFANAS 102 (258)
T ss_pred ccC-CCCCccEEEEccC
Confidence 776 4579999999864
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.35 E-value=1.3e-11 Score=97.50 Aligned_cols=76 Identities=13% Similarity=-0.008 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEec
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+..+|||+|||+|.++..++...+..+|+++|+|++|++.+++... ..+. ++.++.+|.+.++. +++||+|++++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~---~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAA---ELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHH---HcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 3689999999999999988865567899999999999999987543 2233 48889999999887 78999999975
Q ss_pred c
Q 030823 170 L 170 (171)
Q Consensus 170 ~ 170 (171)
.
T Consensus 121 ~ 121 (187)
T PRK00107 121 V 121 (187)
T ss_pred c
Confidence 3
No 23
>PRK06202 hypothetical protein; Provisional
Probab=99.33 E-value=5.7e-12 Score=101.64 Aligned_cols=75 Identities=11% Similarity=-0.062 Sum_probs=59.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRF 165 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV 165 (171)
.+..+|||+|||+|.++..|.+ .++..+|+|+|+|++|++.+++.. ...++.+.+++.+.+|+++++||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-----~~~~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-----RRPGVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-----ccCCCeEEEEecccccccCCCccEE
Confidence 4557999999999999888864 233459999999999999997642 2234566778888888888999999
Q ss_pred EEec
Q 030823 166 FVLA 169 (171)
Q Consensus 166 ~s~~ 169 (171)
+++.
T Consensus 134 ~~~~ 137 (232)
T PRK06202 134 TSNH 137 (232)
T ss_pred EECC
Confidence 9985
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.33 E-value=2.3e-11 Score=99.32 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhh--cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc
Q 030823 67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG--RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE 144 (171)
Q Consensus 67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~--~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~ 144 (171)
-..|+.++..++..+ .+ ...+..+|||||||+|.++..+.+ ..+..+++++|+|++|++.|+++... .....+
T Consensus 36 ~p~y~~~~~~~~~~~-~~---~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~ 110 (247)
T PRK15451 36 VPGYSNIISMIGMLA-ER---FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTP 110 (247)
T ss_pred CCChHHHHHHHHHHH-HH---hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCC
Confidence 345666665554332 22 224568999999999999988876 23567999999999999999875421 011225
Q ss_pred eeEEEccCCCCCCCCCccceEEEec
Q 030823 145 TCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 145 ~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+.++++|.+.+|++ .+|+|+++.
T Consensus 111 v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 111 VDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred eEEEeCChhhCCCC--CCCEEehhh
Confidence 78899999999875 489998763
No 25
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.31 E-value=2.9e-11 Score=94.88 Aligned_cols=74 Identities=12% Similarity=0.020 Sum_probs=60.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEec
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
..+|||+|||+|.++..++...+..+|+++|+|++|++.+++... ..+. ++.++.+|.+.++. +++||+|++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~---~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~ 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKA---ELGLNNVEIVNGRAEDFQH-EEQFDVITSRA 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHH---HhCCCCeEEEecchhhccc-cCCccEEEehh
Confidence 579999999999999988765566799999999999998876442 2233 57889999998753 68999999975
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.30 E-value=5.2e-11 Score=101.33 Aligned_cols=76 Identities=11% Similarity=-0.040 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+..+|||||||+|.++..|++. ..+|+|+|+|++|++.|+++... .....++.++++|++.+|+++++||+|++..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~-~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADM-DPVTSTIEYLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHh-cCcccceeEEecCHHHhhhccCCCCEEEEhh
Confidence 3458999999999999999873 47999999999999999864310 0011257889999999999889999999875
No 27
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.28 E-value=3.6e-11 Score=96.11 Aligned_cols=71 Identities=17% Similarity=0.075 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
+..+|||+|||+|.++..++.. ..+|+|+|+|++|+..++++.. ..+. ++.|.++|.+.++ ++||+|+++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~---~~~~~~~i~~~~~d~~~~~---~~fD~ii~~ 126 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQ---GRDVAGNVEFEVNDLLSLC---GEFDIVVCM 126 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEECChhhCC---CCcCEEEEh
Confidence 4689999999999999999874 3699999999999999987542 1222 5788999998877 799999986
Q ss_pred c
Q 030823 169 A 169 (171)
Q Consensus 169 ~ 169 (171)
.
T Consensus 127 ~ 127 (219)
T TIGR02021 127 D 127 (219)
T ss_pred h
Confidence 4
No 28
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.27 E-value=1.7e-11 Score=104.97 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=62.6
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
.+..+|||||||+|.++..+.+..+..+|+++|+|++|++.++++. ...++.++.+|.+.+|+++++||+|+++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~-----~~~~i~~i~gD~e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----PLKECKIIEGDAEDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh-----hccCCeEEeccHHhCCCCCCceeEEEEcC
Confidence 4567999999999999988876545579999999999999998742 12346779999999999999999999864
No 29
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.26 E-value=4.1e-11 Score=99.00 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=61.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
.+..+|||||||+|..+..|++.. ..+|+++|+|++|++.+++... ...++.++++|....|+++++||+|++.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~----~~~~i~~~~~D~~~~~~~~~~FD~V~s~ 124 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNS----DKNKIEFEANDILKKDFPENTFDMIYSR 124 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcC----cCCceEEEECCcccCCCCCCCeEEEEEh
Confidence 456899999999999999887643 3599999999999999987431 2235788999999999999999999984
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.26 E-value=3.5e-11 Score=95.23 Aligned_cols=73 Identities=12% Similarity=-0.035 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEec
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+..+|||+|||+|.++..|++. ..+|+++|+|++|++.+++... ..+. ++.+.++|...+++ +++||+|+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~---~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~ 103 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKA---AENLDNLHTAVVDLNNLTF-DGEYDFILSTV 103 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHH---HcCCCcceEEecChhhCCc-CCCcCEEEEec
Confidence 4579999999999999999985 3699999999999999987542 2233 46778899988887 46799999875
No 31
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.25 E-value=1.8e-11 Score=97.34 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=63.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccC-CCCC--CCCCccceEE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDE-EFLP--LKERYACRFF 166 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~-e~LP--f~~~sfDlV~ 166 (171)
+..+|||+|||+|.++..+++..+..+|+++|+|++|++.+++... ..+ .++.++++|+ +.++ +++++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~---~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE---EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH---HcCCCCEEEEecCHHHHHHHHcCccccceEE
Confidence 5689999999999999999876666799999999999999987542 122 3578899999 8887 8889999999
Q ss_pred Eec
Q 030823 167 VLA 169 (171)
Q Consensus 167 s~~ 169 (171)
++.
T Consensus 117 ~~~ 119 (202)
T PRK00121 117 LNF 119 (202)
T ss_pred EEC
Confidence 864
No 32
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.25 E-value=8.9e-11 Score=95.07 Aligned_cols=77 Identities=19% Similarity=0.145 Sum_probs=60.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
.+..+|||+|||+|.++..+.+.. +..+++|+|+|++|++.|++.... .....++.++++|...+|++ .+|+|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 356789999999999998887642 467999999999999999875421 01123578899999999985 4898887
Q ss_pred ec
Q 030823 168 LA 169 (171)
Q Consensus 168 ~~ 169 (171)
+.
T Consensus 129 ~~ 130 (239)
T TIGR00740 129 NF 130 (239)
T ss_pred ec
Confidence 64
No 33
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.23 E-value=8.4e-12 Score=101.51 Aligned_cols=75 Identities=12% Similarity=0.007 Sum_probs=64.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL 170 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~ 170 (171)
+..+|||+|||.|.++..+++.+ ..|+|+|+|+++++.|+.+. ...++.+.|.....|.+-...++||+|+|+.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha---~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV 133 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHA---LESGVNIDYRQATVEDLASAGGQFDVVTCMEV 133 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhh---hhccccccchhhhHHHHHhcCCCccEEEEhhH
Confidence 56899999999999999999865 89999999999999998754 24566778888999988877799999999754
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.22 E-value=5.7e-11 Score=93.90 Aligned_cols=73 Identities=15% Similarity=-0.009 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+..+|||+|||+|.++..|++++ .+|+++|+|+.|++.+++... ..++++.+.++|....+++ ++||+|+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~---~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~ 102 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKA---RENLPLRTDAYDINAAALN-EDYDFIFSTV 102 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHH---HhCCCceeEeccchhcccc-CCCCEEEEec
Confidence 35799999999999999998853 699999999999999876442 2345566778888777764 6899999874
No 35
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.21 E-value=3.2e-10 Score=90.38 Aligned_cols=78 Identities=21% Similarity=0.162 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+..+|||+|||+|.++..+...++ ..+++++|++++|++.+++.... .....++.++.+|.+.+++++++||+|+++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD-LGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc-cccccCeEEEecccccCCCCCCCccEEEEec
Confidence 457999999999999999987654 57999999999999999875321 0012357788999999998889999998753
No 36
>PRK06922 hypothetical protein; Provisional
Probab=99.21 E-value=4.7e-11 Score=109.07 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~~~sfDlV~s~ 168 (171)
+..+|||+|||+|.++..+++..+..+|+|+|+|+.|++.+++... ..+.++.++++|...+| |++++||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~---~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQ---NEGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh---hcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 4689999999999999999876677899999999999999986431 23345677889998888 889999999987
Q ss_pred c
Q 030823 169 A 169 (171)
Q Consensus 169 ~ 169 (171)
.
T Consensus 495 ~ 495 (677)
T PRK06922 495 S 495 (677)
T ss_pred h
Confidence 4
No 37
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.21 E-value=2e-10 Score=90.69 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~-~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+..+|||+|||+|.++..+.+..+. .+++++|+++.+++.+++.. ....++.++.+|...+|++++.||+|+++.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~----~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKS----ELPLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHh----ccCCCceEEecchhcCCCCCCcEEEEEEee
Confidence 5689999999999999999876543 59999999999999997643 112246788999999999889999998864
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.21 E-value=9.2e-11 Score=103.77 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=66.3
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC
Q 030823 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK 158 (171)
Q Consensus 79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~ 158 (171)
+.+++.+. ..+..+|||||||+|.++..|+... ..+|+|+|+|++|+..|++... .....+.|+++|...+|++
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~---~~~~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAI---GRKCSVEFEVADCTKKTYP 329 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhh---cCCCceEEEEcCcccCCCC
Confidence 44555443 2456799999999999998888744 4589999999999999976421 1223578899999999999
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
+++||+|+|..
T Consensus 330 ~~~fD~I~s~~ 340 (475)
T PLN02336 330 DNSFDVIYSRD 340 (475)
T ss_pred CCCEEEEEECC
Confidence 99999999964
No 39
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.20 E-value=1.9e-12 Score=104.91 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=73.2
Q ss_pred CCCCccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcc-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEE
Q 030823 43 NGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMM 121 (171)
Q Consensus 43 ~~~~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~-~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gv 121 (171)
|+..+..+||..+.+.. ...- .+-.|- +-+.+.++|.... .+|.++||+|||||..+..|.. ...+++|+
T Consensus 83 P~aYVe~LFD~~Ae~Fd--~~LV--dkL~Y~---vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~--~a~~ltGv 153 (287)
T COG4976 83 PSAYVETLFDQYAERFD--HILV--DKLGYS---VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRD--MADRLTGV 153 (287)
T ss_pred chHHHHHHHHHHHHHHH--HHHH--HHhcCc---cHHHHHHHHHhccCCccceeeecccCcCcccHhHHH--HHhhccCC
Confidence 33556788999775443 2222 111111 1122223333332 3599999999999999999987 45799999
Q ss_pred eCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC-CCCCccceEEEec
Q 030823 122 DTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKERYACRFFVLA 169 (171)
Q Consensus 122 D~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LP-f~~~sfDlV~s~~ 169 (171)
|+|++||.+|.+ ++.--...+++.. .++ ..++.||+|++..
T Consensus 154 DiS~nMl~kA~e-------Kg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 154 DISENMLAKAHE-------KGLYDTLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred chhHHHHHHHHh-------ccchHHHHHHHHHHHhhhccCCcccchhhhh
Confidence 999999999986 4443334556655 555 6789999998754
No 40
>PRK08317 hypothetical protein; Provisional
Probab=99.19 E-value=2.4e-10 Score=90.67 Aligned_cols=77 Identities=22% Similarity=0.140 Sum_probs=63.6
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
.+..+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++... ....++.++.+|.+.+|+++++||+|++.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA---GLGPNVEFVRGDADGLPFPDGSFDAVRSD 94 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh---CCCCceEEEecccccCCCCCCCceEEEEe
Confidence 355799999999999999998754 55799999999999999986421 12346788999999999999999999986
Q ss_pred c
Q 030823 169 A 169 (171)
Q Consensus 169 ~ 169 (171)
.
T Consensus 95 ~ 95 (241)
T PRK08317 95 R 95 (241)
T ss_pred c
Confidence 4
No 41
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.19 E-value=2e-10 Score=97.51 Aligned_cols=74 Identities=16% Similarity=-0.016 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc---cCCCceeEEEccCCCCCCCCCccceEEE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~---~~~~~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
+..+|||+|||+|.++..|.+. ..+|+|+|+|++|++.++++..... ....++.|.++|.+.+ +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 4579999999999999999874 3699999999999999987542100 0123567888887654 589999998
Q ss_pred ec
Q 030823 168 LA 169 (171)
Q Consensus 168 ~~ 169 (171)
+.
T Consensus 219 ~~ 220 (315)
T PLN02585 219 LD 220 (315)
T ss_pred cC
Confidence 64
No 42
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.19 E-value=1.4e-10 Score=89.46 Aligned_cols=72 Identities=13% Similarity=0.065 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
+..+|||+|||+|.++..+.++ ..+|+++|+++.|++.+++... ...++.++.+|...+++++..||.|+++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~----~~~~v~ii~~D~~~~~~~~~~~d~vi~n 84 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFA----AADNLTVIHGDALKFDLPKLQPYKVVGN 84 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhc----cCCCEEEEECchhcCCccccCCCEEEEC
Confidence 4578999999999999999885 4799999999999999986431 1235778999999999888889999987
No 43
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.19 E-value=1.1e-10 Score=96.17 Aligned_cols=78 Identities=23% Similarity=0.216 Sum_probs=62.2
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
.+..+|||+|||+|..+..+... ++..+|+++|+|++|++.+++... ..+. ++.++.+|.+.+|+++++||+|++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~---~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR---KAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH---HcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 45689999999999887766543 344689999999999999987432 1222 577899999999999999999998
Q ss_pred ecc
Q 030823 168 LAL 170 (171)
Q Consensus 168 ~~~ 170 (171)
+.+
T Consensus 153 ~~v 155 (272)
T PRK11873 153 NCV 155 (272)
T ss_pred cCc
Confidence 753
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.18 E-value=2.6e-10 Score=91.02 Aligned_cols=71 Identities=23% Similarity=0.218 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
+..+|||+|||+|.++..|.+.+ .+|+++|+|++|++.+++... ..+. .+.+..+| ++..+++||+|+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~---~~~~~~~i~~~~~d---~~~~~~~fD~v~~~ 134 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAP---EAGLAGNITFEVGD---LESLLGRFDTVVCL 134 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH---hcCCccCcEEEEcC---chhccCCcCEEEEc
Confidence 45799999999999999998743 579999999999999987542 1222 56778888 44557899999986
Q ss_pred c
Q 030823 169 A 169 (171)
Q Consensus 169 ~ 169 (171)
.
T Consensus 135 ~ 135 (230)
T PRK07580 135 D 135 (230)
T ss_pred c
Confidence 4
No 45
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.18 E-value=9.4e-11 Score=99.62 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL 170 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~ 170 (171)
+..+|||||||+|.++..+++.+ ...|+|+|+|+.|+.+++..... .....++.++.+|.+.+|+ +++||+|+|+.+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~-~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKL-LGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHh-cCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 45799999999999999998764 34799999999999876432211 0123468889999999999 899999999753
No 46
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.17 E-value=5.1e-10 Score=86.60 Aligned_cols=84 Identities=24% Similarity=0.167 Sum_probs=62.9
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc-eeEEEccCCCCCC
Q 030823 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEFLPL 157 (171)
Q Consensus 79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~-~~~~~~D~e~LPf 157 (171)
..|++.+... +..+|||+|||+|.++..+++..+..+|+++|+++.+++.+++... ..+.+ +.++..|.-. ++
T Consensus 21 ~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~---~n~~~~v~~~~~d~~~-~~ 94 (170)
T PF05175_consen 21 RLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAE---RNGLENVEVVQSDLFE-AL 94 (170)
T ss_dssp HHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHH---HTTCTTEEEEESSTTT-TC
T ss_pred HHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH---hcCccccccccccccc-cc
Confidence 3444444432 5689999999999999999987776689999999999999976443 23333 7777777643 33
Q ss_pred CCCccceEEEe
Q 030823 158 KERYACRFFVL 168 (171)
Q Consensus 158 ~~~sfDlV~s~ 168 (171)
++++||+|+||
T Consensus 95 ~~~~fD~Iv~N 105 (170)
T PF05175_consen 95 PDGKFDLIVSN 105 (170)
T ss_dssp CTTCEEEEEE-
T ss_pred cccceeEEEEc
Confidence 47999999997
No 47
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.16 E-value=3.9e-10 Score=90.35 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCC
Q 030823 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEE 153 (171)
Q Consensus 76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e 153 (171)
.+...+.+.+. ..+..+|||+|||+|.++..+++.. +.++|+++|++++|++.+++... ..+. ++.++++|..
T Consensus 63 ~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~---~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 63 HMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK---KLGYDNVEVIVGDGT 137 (212)
T ss_pred HHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCCeEEEECCcc
Confidence 34444444443 2456899999999999998887643 34699999999999999987543 2333 5788999988
Q ss_pred CCCCCCCccceEEEec
Q 030823 154 FLPLKERYACRFFVLA 169 (171)
Q Consensus 154 ~LPf~~~sfDlV~s~~ 169 (171)
..+.+++.||+|++.+
T Consensus 138 ~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 138 LGYEENAPYDRIYVTA 153 (212)
T ss_pred cCCCcCCCcCEEEECC
Confidence 7776778999998864
No 48
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.16 E-value=5.5e-10 Score=80.25 Aligned_cols=77 Identities=12% Similarity=0.024 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCCCCCccceEEEec
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKERYACRFFVLA 169 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf~~~sfDlV~s~~ 169 (171)
+..+|||+|||+|.++..+.+..+..+|+++|+|+.|++.+++.... ....++.++.+|... ++...++||.|++..
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR--FGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH--hCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 35799999999999999998765557999999999999999764321 111246777788764 444457999999864
No 49
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.15 E-value=4.6e-10 Score=89.34 Aligned_cols=77 Identities=10% Similarity=-0.086 Sum_probs=60.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF 166 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~ 166 (171)
.+..+|||+|||+|.++..+.+.. +.++|+++|++++|++.+++... ..+. ++.++.+|....+.+.++||+|+
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~---~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE---RLGYWGVVEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCCcEEEEECCcccCCccCCCccEEE
Confidence 456899999999999998887643 24699999999999999986542 2232 37788899877655678999999
Q ss_pred Eec
Q 030823 167 VLA 169 (171)
Q Consensus 167 s~~ 169 (171)
+++
T Consensus 148 ~~~ 150 (205)
T PRK13944 148 VTA 150 (205)
T ss_pred Ecc
Confidence 875
No 50
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.15 E-value=1.6e-10 Score=96.38 Aligned_cols=73 Identities=14% Similarity=0.029 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL 170 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~ 170 (171)
..+|||+|||+|.++..|++.+ .+|+++|+|++|++.+++... ..++++.+.+.|....++ +++||+|+++.+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~---~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v 193 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAE---KENLNIRTGLYDINSASI-QEEYDFILSTVV 193 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH---HcCCceEEEEechhcccc-cCCccEEEEcch
Confidence 4699999999999999998743 699999999999999876542 244567778889887776 789999998753
No 51
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.13 E-value=1.5e-10 Score=96.03 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=70.1
Q ss_pred hCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823 66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET 145 (171)
Q Consensus 66 ~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~ 145 (171)
.++++-.....+++.+++.+. ..+..+|||+|||+|.++..|.+.+ .+|+++|++++|++.+++.. ...++
T Consensus 19 ~~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~-----~~~~v 89 (272)
T PRK00274 19 SLGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETF-----AEDNL 89 (272)
T ss_pred ccCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhh-----ccCce
Confidence 355543344456666666543 2355789999999999999999864 49999999999999997642 12467
Q ss_pred eEEEccCCCCCCCCCccceEEEe
Q 030823 146 CFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 146 ~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
.++++|...+++++-.+|.|++|
T Consensus 90 ~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 90 TIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred EEEEChhhcCCHHHcCcceEEEe
Confidence 88999999998865336888876
No 52
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.13 E-value=1.3e-11 Score=86.60 Aligned_cols=73 Identities=15% Similarity=-0.074 Sum_probs=43.1
Q ss_pred EEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCCccceEEEecc
Q 030823 96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKERYACRFFVLAL 170 (171)
Q Consensus 96 LDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~~~sfDlV~s~~~ 170 (171)
||||||+|.++..+.+..+..+++++|+|+.|++.++++... ........+..+..... ..+++||+|+++.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE--LGNDNFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH--CT---EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh--cCCcceeEEEeecCChhhcccccccceehhhhh
Confidence 799999999999998876778999999999999877654321 11122333343333322 22369999999864
No 53
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.13 E-value=3.7e-10 Score=98.92 Aligned_cols=75 Identities=13% Similarity=-0.097 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-CCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf-~~~sfDlV~s~ 168 (171)
+..+|||+|||+|.++..++...+..+|+++|+|++|++.+++... ..+.++.++.+|.....+ .+++||+|+||
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~---~~g~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA---DLGARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCcEEEEEcchhccccccCCCccEEEEC
Confidence 3468999999999999988865566799999999999999987542 234468889999755433 24689999996
No 54
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.12 E-value=1.5e-10 Score=86.76 Aligned_cols=68 Identities=19% Similarity=0.130 Sum_probs=54.6
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
..+..+|||||||+|.++..+.+.+ .+++|+|+|+.|++. . ...+...+....++++++||+|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK-R-----------NVVFDNFDAQDPPFPDGSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH-T-----------TSEEEEEECHTHHCHSSSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh-h-----------hhhhhhhhhhhhhccccchhhHhhH
Confidence 3567899999999999999998754 499999999999988 1 1334455555667789999999998
Q ss_pred cc
Q 030823 169 AL 170 (171)
Q Consensus 169 ~~ 170 (171)
.+
T Consensus 86 ~~ 87 (161)
T PF13489_consen 86 DV 87 (161)
T ss_dssp SS
T ss_pred HH
Confidence 64
No 55
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.12 E-value=2.8e-10 Score=89.47 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-C-CCCCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-L-PLKERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-L-Pf~~~sfDlV~s~ 168 (171)
+..+|||+|||+|.++..+.+.. ...++|+|+|++|+..+++ .+ +.++++|.+. + ++++++||+|+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-------~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-------RG--VNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-------cC--CeEEEEEhhhcccccCCCCcCEEEEh
Confidence 45799999999999999887643 3578999999999999864 22 4567888765 5 4788999999997
Q ss_pred c
Q 030823 169 A 169 (171)
Q Consensus 169 ~ 169 (171)
.
T Consensus 83 ~ 83 (194)
T TIGR02081 83 Q 83 (194)
T ss_pred h
Confidence 5
No 56
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.12 E-value=7.6e-10 Score=88.52 Aligned_cols=88 Identities=15% Similarity=0.062 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF 154 (171)
Q Consensus 77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~ 154 (171)
+...+.+.+. ..+..+|||+|||+|.++..|++..+ .++|+++|++++|++.|++... ..+. ++.++++|...
T Consensus 65 ~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~---~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 65 MVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLR---KLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH---HCCCCCeEEEECCccc
Confidence 3344444443 24568999999999999999987532 4579999999999999987543 2333 57889999877
Q ss_pred CCCCCCccceEEEec
Q 030823 155 LPLKERYACRFFVLA 169 (171)
Q Consensus 155 LPf~~~sfDlV~s~~ 169 (171)
.+...+.||+|++.+
T Consensus 140 ~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 140 GWEPLAPYDRIYVTA 154 (215)
T ss_pred CCcccCCCCEEEEcC
Confidence 655567999999864
No 57
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.11 E-value=8.6e-10 Score=87.63 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=56.1
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
...+.++||+|||.|.++..|+++. .+++++|+|+..+++|+++.. ...++.|+++|.-.. .+++.||||+.+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp~~-~P~~~FDLIV~S 113 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA----GLPHVEWIQADVPEF-WPEGRFDLIVLS 113 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TTT----SS-EEEEEEE
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCCCC-CCCCCeeEEEEe
Confidence 4567899999999999999999854 899999999999999998652 224788999997654 468999999998
Q ss_pred cc
Q 030823 169 AL 170 (171)
Q Consensus 169 ~~ 170 (171)
.+
T Consensus 114 EV 115 (201)
T PF05401_consen 114 EV 115 (201)
T ss_dssp S-
T ss_pred hH
Confidence 65
No 58
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.10 E-value=1.7e-10 Score=91.08 Aligned_cols=76 Identities=9% Similarity=0.107 Sum_probs=62.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC---CCCCccceEE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP---LKERYACRFF 166 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP---f~~~sfDlV~ 166 (171)
....+||||||+|.++..++...+...|+|+|++++|++.+++... ..+. ++.++++|+..++ ++++++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~---~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKAN---KLGLKNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH---HhCCCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 4578999999999999999987777899999999999999876542 1222 6888999987664 5667999999
Q ss_pred Eec
Q 030823 167 VLA 169 (171)
Q Consensus 167 s~~ 169 (171)
++.
T Consensus 93 ~~~ 95 (194)
T TIGR00091 93 LNF 95 (194)
T ss_pred EEC
Confidence 874
No 59
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.10 E-value=1e-09 Score=85.78 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeE
Q 030823 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCF 147 (171)
Q Consensus 69 ~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~ 147 (171)
......+.+...+.+.+. + .+..+|||+|||+|.++..+.+.++..+|+++|+|++|++.+++... ..+. ++.+
T Consensus 11 ~~~~~~~~~r~~~~~~l~-~-~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~---~~~~~~i~~ 85 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE-L-HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ---RFGCGNIDI 85 (187)
T ss_pred CCCCchHHHHHHHHHhcC-C-CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HhCCCCeEE
Confidence 455666666665555553 2 35679999999999999999876666799999999999999976432 1222 4667
Q ss_pred EEccCCCCCCCCCccceEEEec
Q 030823 148 VVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 148 ~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+.+|.. .++ +++||+|++..
T Consensus 86 ~~~d~~-~~~-~~~~D~v~~~~ 105 (187)
T PRK08287 86 IPGEAP-IEL-PGKADAIFIGG 105 (187)
T ss_pred EecCch-hhc-CcCCCEEEECC
Confidence 778764 344 46899999865
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.08 E-value=6.3e-10 Score=86.35 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
+..+|||+|||+|.++..+.+.+ .+|+++|+|++|++.+++... ..+.++.++.+|....+ +++||+|+++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~--~~~fD~Vi~n 89 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAK---LNNVGLDVVMTDLFKGV--RGKFDVILFN 89 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHH---HcCCceEEEEccccccc--CCcccEEEEC
Confidence 34789999999999999998865 389999999999999987542 23446777888876654 4599999987
No 61
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.07 E-value=1.1e-09 Score=88.43 Aligned_cols=75 Identities=17% Similarity=0.076 Sum_probs=60.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEe
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
....+|||+|||+|.++..+....+..+++++|+|+.|++.+++... ..+. ++.++.+|... ++++++||+|+++
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~---~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n 161 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAA---RLGLDNVTFLQSDWFE-PLPGGKFDLIVSN 161 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HcCCCeEEEEECchhc-cCcCCceeEEEEC
Confidence 34468999999999999999876666799999999999999986442 2233 47788899865 5678899999985
No 62
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.06 E-value=9.3e-10 Score=91.08 Aligned_cols=79 Identities=11% Similarity=-0.054 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCcH----HHHHHhhcCC-----CcEEEEEeCCHHHHHHHHHhhhhh---c-------------cC----
Q 030823 91 TFPTALCLGGSLEA----VRRLLRGRGG-----IEKLIMMDTSYDMLKLCKDAQQDA---H-------------ND---- 141 (171)
Q Consensus 91 ~~~~vLDlGcGtG~----l~~~L~~~~~-----~~~v~gvD~S~~mL~~a~~~~~~~---~-------------~~---- 141 (171)
+..+|+|+|||||. ++..|.+..+ ..+|+|+|+|++||+.|++..... . ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999996 4555544322 358999999999999998642100 0 00
Q ss_pred ---C--CceeEEEccCCCCCCCCCccceEEEec
Q 030823 142 ---N--IETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 142 ---~--~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
. -.+.|.++|....|+++++||+|+|..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn 211 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRN 211 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEech
Confidence 0 147789999999988889999999853
No 63
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.05 E-value=6.9e-10 Score=98.21 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC--CCCCCCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--FLPLKERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e--~LPf~~~sfDlV~s~ 168 (171)
+..+|||||||+|.++..|.+. ..+|+|+|+|++|++.+++.. ....++.++++|.+ .+|+++++||+|+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~----~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN----GHYKNVKFMCADVTSPDLNISDGSVDLIFSN 110 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh----ccCCceEEEEecccccccCCCCCCEEEEehh
Confidence 4568999999999999999874 369999999999999876421 12235778899985 578889999999987
Q ss_pred c
Q 030823 169 A 169 (171)
Q Consensus 169 ~ 169 (171)
.
T Consensus 111 ~ 111 (475)
T PLN02336 111 W 111 (475)
T ss_pred h
Confidence 4
No 64
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.05 E-value=3e-10 Score=93.55 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=53.7
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC------ceeEEEccCCCCCCCCCccceEE
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI------ETCFVVGDEEFLPLKERYACRFF 166 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~------~~~~~~~D~e~LPf~~~sfDlV~ 166 (171)
.+|||+|||+|.++..|++.+ +.|+|+|++++|++.|+++.. ..+.. .+.+.+.+.|.+-- .||.|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~--~dP~~~~~~~y~l~~~~~~~E~~~~---~fDaVv 163 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKK--MDPVLEGAIAYRLEYEDTDVEGLTG---KFDAVV 163 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhh--cCchhccccceeeehhhcchhhccc---ccceee
Confidence 679999999999999999854 899999999999999988632 11111 24456667666543 399999
Q ss_pred Eec
Q 030823 167 VLA 169 (171)
Q Consensus 167 s~~ 169 (171)
|+.
T Consensus 164 cse 166 (282)
T KOG1270|consen 164 CSE 166 (282)
T ss_pred eHH
Confidence 874
No 65
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.04 E-value=9.9e-10 Score=90.45 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=69.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030823 67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC 146 (171)
Q Consensus 67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~ 146 (171)
+||+=-+...+++.+++.+. ..+..+|||+|||+|.++..+.+. ..+|+++|+++.|++.+++... ...++.
T Consensus 7 ~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~----~~~~v~ 78 (258)
T PRK14896 7 LGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEI----AAGNVE 78 (258)
T ss_pred CCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhc----cCCCEE
Confidence 34433334556666666543 234589999999999999999985 3699999999999999986431 123578
Q ss_pred EEEccCCCCCCCCCccceEEEe
Q 030823 147 FVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 147 ~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
++++|...++++ .||.|++|
T Consensus 79 ii~~D~~~~~~~--~~d~Vv~N 98 (258)
T PRK14896 79 IIEGDALKVDLP--EFNKVVSN 98 (258)
T ss_pred EEEeccccCCch--hceEEEEc
Confidence 899999998875 48999987
No 66
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.03 E-value=1.9e-09 Score=91.52 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=57.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
.+..+|||||||+|.++..+...+ ...|+|+|+|+.|+.+++..... ......+.+..++.+.+|.. ++||+|+|+.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~-~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g 196 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKL-LDNDKRAILEPLGIEQLHEL-YAFDTVFSMG 196 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHH-hccCCCeEEEECCHHHCCCC-CCcCEEEEcc
Confidence 345799999999999988887654 35899999999999876432110 01123466778899999864 5899999986
Q ss_pred c
Q 030823 170 L 170 (171)
Q Consensus 170 ~ 170 (171)
+
T Consensus 197 v 197 (314)
T TIGR00452 197 V 197 (314)
T ss_pred h
Confidence 4
No 67
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.01 E-value=1.5e-09 Score=86.59 Aligned_cols=72 Identities=13% Similarity=-0.041 Sum_probs=57.9
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEEec
Q 030823 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+|||||||+|.++..+.+.++..+|+|+|+|++|++.+++... ..+ .++.++.+|.+..|++ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~---~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIR---ALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---hcCCCcceEEEecccccCCCC-CCCCEeehHH
Confidence 6999999999999999876655799999999999999987542 122 2467888998777774 6899999753
No 68
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.01 E-value=2.9e-09 Score=88.96 Aligned_cols=74 Identities=12% Similarity=-0.044 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
+..+|||+|||+|.++..++...+..+|+++|+|++|++.|++... ..+. ++.++.+|... ++++++||+|++|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~---~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIE---RHGLEDRVTLIQSDLFA-ALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEECchhh-ccCCCCccEEEEC
Confidence 4468999999999999999876666799999999999999987542 2233 47788898743 3446789999997
No 69
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.00 E-value=3.3e-09 Score=88.45 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=57.9
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
.+|||+|||+|.++..++...+..+|+++|+|+++++.+++... ..+. ++.++.+|... +++++.||+|+||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~---~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAE---KNQLEHRVEFIQSNLFE-PLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEECchhc-cCcCCCccEEEEC
Confidence 68999999999999999876666799999999999999987432 2233 37888898754 4555689999997
No 70
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.00 E-value=1.3e-09 Score=86.18 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=57.3
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC-CCCCccceEEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LP-f~~~sfDlV~s 167 (171)
.+..+|||+|||.|.+...|.+. +.-..+|+|++++.+..+-+ +++++ +.+|.+ .|+ |++++||.|+.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-------rGv~V--iq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-------RGVSV--IQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-------cCCCE--EECCHHHhHhhCCCCCccEEeh
Confidence 56799999999999999999874 45689999999999998864 56555 788865 454 99999999987
Q ss_pred e
Q 030823 168 L 168 (171)
Q Consensus 168 ~ 168 (171)
+
T Consensus 82 s 82 (193)
T PF07021_consen 82 S 82 (193)
T ss_pred H
Confidence 5
No 71
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.99 E-value=3.4e-09 Score=92.13 Aligned_cols=71 Identities=14% Similarity=0.045 Sum_probs=57.3
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
.+..+|||||||+|.++..+++.. ..+|+|+|+|++|++.+++.. .+..+.+..+|...+ +++||+|++..
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~-----~~l~v~~~~~D~~~l---~~~fD~Ivs~~ 236 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERC-----AGLPVEIRLQDYRDL---NGQFDRIVSVG 236 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh-----ccCeEEEEECchhhc---CCCCCEEEEeC
Confidence 456799999999999999998754 359999999999999998753 334567777887665 57999999864
No 72
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.98 E-value=3.4e-09 Score=89.56 Aligned_cols=72 Identities=13% Similarity=-0.049 Sum_probs=57.8
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
.+|||+|||+|.++..++...+..+|+++|+|+.+++.|++... ..+. ++.++.+|... ++++++||+|++|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~---~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIE---RHGLEDRVTLIESDLFA-ALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH---HhCCCCcEEEEECchhh-hCCCCCccEEEEC
Confidence 68999999999999999876667899999999999999987542 1232 47889999643 2345789999997
No 73
>PRK14967 putative methyltransferase; Provisional
Probab=98.96 E-value=2.4e-09 Score=86.09 Aligned_cols=73 Identities=12% Similarity=-0.038 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
+..+|||+|||+|.++..++..+ ..+|+++|+|++|++.+++... ..+.++.++.+|... ++++++||+|+++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~---~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n 108 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNAL---LAGVDVDVRRGDWAR-AVEFRPFDVVVSN 108 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH---HhCCeeEEEECchhh-hccCCCeeEEEEC
Confidence 45799999999999999888743 3599999999999999876432 234456777888755 3567899999997
No 74
>PHA03411 putative methyltransferase; Provisional
Probab=98.96 E-value=4.2e-09 Score=87.78 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=56.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
..+|||+|||+|.++..+..+.+..+|+++|+++.|++.+++.. .++.++++|...++. +++||+|++|
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIsN 133 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVISN 133 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEEc
Confidence 47899999999999988876544469999999999999997631 246788999887764 5789999996
No 75
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.96 E-value=4.2e-09 Score=83.63 Aligned_cols=73 Identities=15% Similarity=0.032 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+..++||+|||.|..+..|++.+ -.|+++|.|+..++.+.+... ..++++...+.|.+...++ +.||+|+|..
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~---~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~ 102 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAE---EEGLDIRTRVADLNDFDFP-EEYDFIVSTV 102 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHH---HTT-TEEEEE-BGCCBS-T-TTEEEEEEES
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHh---hcCceeEEEEecchhcccc-CCcCEEEEEE
Confidence 35899999999999999999854 699999999999998876542 3567788899999988874 7899999853
No 76
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.95 E-value=6.2e-09 Score=87.55 Aligned_cols=70 Identities=21% Similarity=0.116 Sum_probs=52.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCCCCC
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKER 160 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf~~~ 160 (171)
.+..+|||+|||||..+..|.+..+ ..+|+++|+|++||+.+.++... ..+++++.++++|... +++++.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~-~~p~~~v~~i~gD~~~~~~~~~~ 133 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA-DYPQLEVHGICADFTQPLALPPE 133 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh-hCCCceEEEEEEcccchhhhhcc
Confidence 3457899999999999999987543 46899999999999999775321 1245567788999875 455443
No 77
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.95 E-value=3.3e-09 Score=92.04 Aligned_cols=75 Identities=9% Similarity=-0.005 Sum_probs=57.4
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
..+|||+|||+|.++..+.+.++..+|+++|.|+.|++.+++.... .... .++.++..|... .+++++||+|+||
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALS-GVEPFRFNAVLCN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEccccc-cCCCCCEEEEEEC
Confidence 3689999999999999998877778999999999999999864321 1111 146777777643 2345789999997
No 78
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.95 E-value=8.4e-09 Score=86.24 Aligned_cols=76 Identities=9% Similarity=-0.046 Sum_probs=55.4
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF 166 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~ 166 (171)
..+..+|||+|||+|.++..+...+ ..+|+++|+|+.|++.+++... ..++ .+....++ ..++.+++||+|+
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~---~n~~~~~~~~~~~~--~~~~~~~~fDlVv 230 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAE---LNQVSDRLQVKLIY--LEQPIEGKADVIV 230 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH---HcCCCcceEEEecc--cccccCCCceEEE
Confidence 3456899999999999998887643 4699999999999999987432 1222 23334444 3344578999999
Q ss_pred Eecc
Q 030823 167 VLAL 170 (171)
Q Consensus 167 s~~~ 170 (171)
++.+
T Consensus 231 an~~ 234 (288)
T TIGR00406 231 ANIL 234 (288)
T ss_pred EecC
Confidence 9754
No 79
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.94 E-value=1e-08 Score=81.60 Aligned_cols=88 Identities=14% Similarity=-0.019 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCC
Q 030823 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEE 153 (171)
Q Consensus 75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e 153 (171)
..+...+.+.+. ..+..+|||+|||+|.++..|++.. .+|+++|.+++|++.+++... ..+. ++.++.+|..
T Consensus 64 p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~---~~~~~~v~~~~~d~~ 136 (212)
T PRK00312 64 PYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLK---QLGLHNVSVRHGDGW 136 (212)
T ss_pred HHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHH---HCCCCceEEEECCcc
Confidence 344444544332 2456899999999999998887643 589999999999999987542 1233 4778888875
Q ss_pred CCCCCCCccceEEEec
Q 030823 154 FLPLKERYACRFFVLA 169 (171)
Q Consensus 154 ~LPf~~~sfDlV~s~~ 169 (171)
....+.++||+|++.+
T Consensus 137 ~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 137 KGWPAYAPFDRILVTA 152 (212)
T ss_pred cCCCcCCCcCEEEEcc
Confidence 4333458999999864
No 80
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.94 E-value=3.8e-09 Score=90.58 Aligned_cols=72 Identities=11% Similarity=-0.005 Sum_probs=56.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
..+|||+|||+|.++..+.+..+..+|+++|+|+.|++.+++... ..++...++.+|... ..++.||+|+||
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~---~n~l~~~~~~~D~~~--~~~~~fDlIvsN 268 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA---ANGLEGEVFASNVFS--DIKGRFDMIISN 268 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCEEEEccccc--ccCCCccEEEEC
Confidence 468999999999999999887666799999999999999986442 233445556666543 236899999997
No 81
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=4e-09 Score=92.66 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEc
Q 030823 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG 150 (171)
Q Consensus 71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~ 150 (171)
-++++..+..+...+. ..+..+|||+|||+|..+..+.+..+.++|+++|+|+.|++.+++... ..+.++.++++
T Consensus 226 ~~iQd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~---~~g~~~~~~~~ 300 (427)
T PRK10901 226 VSVQDAAAQLAATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQ---RLGLKATVIVG 300 (427)
T ss_pred EEEECHHHHHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEc
Confidence 3456666555555443 245689999999999999999876544799999999999999987542 23445678889
Q ss_pred cCCCCC--CCCCccceEEEe
Q 030823 151 DEEFLP--LKERYACRFFVL 168 (171)
Q Consensus 151 D~e~LP--f~~~sfDlV~s~ 168 (171)
|...++ +++++||.|++.
T Consensus 301 D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 301 DARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CcccchhhcccCCCCEEEEC
Confidence 988765 456789999964
No 82
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.93 E-value=2.1e-09 Score=77.08 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=58.7
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCC--CCCCccceEEEe
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLP--LKERYACRFFVL 168 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LP--f~~~sfDlV~s~ 168 (171)
.+|||+|||+|.++..+.+.+ ..+++++|+++..++.++.... ..+ .++.++++|...++ +++++||+|++|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLP---RNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCH---HCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHH---HccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 479999999999999998866 6899999999999999986543 222 25788999988775 889999999987
No 83
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.93 E-value=4.1e-09 Score=89.11 Aligned_cols=73 Identities=10% Similarity=-0.043 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCC-CCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPL-KERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf-~~~sfDlV~s~ 168 (171)
+..+|||+|||+|.++..++.. ..+|+|+|+|++|++.|++... ..++ ++.|+++|.+.++. .++.||+|+++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~---~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAA---ELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHH---HcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3579999999999999999984 4799999999999999986442 2333 58899999887643 34679999975
No 84
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.93 E-value=1e-08 Score=84.13 Aligned_cols=76 Identities=20% Similarity=0.103 Sum_probs=59.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
.+..+|||+|||+|.++..++...+..+++++|+|+++++.+++... .....++.++.+|... ++++++||+|+++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~--~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~n 182 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK--HGLGARVEFLQGDWFE-PLPGGRFDLIVSN 182 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--hCCCCcEEEEEccccC-cCCCCceeEEEEC
Confidence 35578999999999999999876666899999999999999987432 0122357788888743 3446899999986
No 85
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.93 E-value=3.7e-09 Score=91.94 Aligned_cols=76 Identities=11% Similarity=-0.011 Sum_probs=63.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC--CCCCCccceEEE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL--PLKERYACRFFV 167 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L--Pf~~~sfDlV~s 167 (171)
..+.+||||||+|.++..++...+...++|+|+++.|+..+.+... ..+. ++.++.+|+..+ +++++++|.|++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~---~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIE---LLNLKNLLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH---HcCCCcEEEEECCHHHhhhhCCCCceeEEEE
Confidence 4578999999999999999987778899999999999999876542 2333 688899998765 588999999998
Q ss_pred ec
Q 030823 168 LA 169 (171)
Q Consensus 168 ~~ 169 (171)
+.
T Consensus 199 nF 200 (390)
T PRK14121 199 HF 200 (390)
T ss_pred eC
Confidence 74
No 86
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.92 E-value=2.3e-09 Score=87.38 Aligned_cols=73 Identities=19% Similarity=0.126 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC--CCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK--ERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~--~~sfDlV~s~ 168 (171)
....++|+|||+|.-++.+++. .++|+++|+|++||+.++.+.. .....+..-..+.+-.++. ++|+|+|++.
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~---~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPP---VTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CcceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCC---cccccCCccccccccccccCCCcceeeehhh
Confidence 3457999999999888888885 4899999999999999975321 1111222233444445554 9999999874
No 87
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.92 E-value=6.6e-09 Score=88.31 Aligned_cols=91 Identities=14% Similarity=-0.006 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEE
Q 030823 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVV 149 (171)
Q Consensus 71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~ 149 (171)
..+...++..|+... .+ .+...|||+|||||.++...... ...++|+|++++|+..++.... ..+. ++.++.
T Consensus 164 ~~l~~~la~~~~~l~-~~-~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~---~~g~~~i~~~~ 236 (329)
T TIGR01177 164 GSMDPKLARAMVNLA-RV-TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLE---HYGIEDFFVKR 236 (329)
T ss_pred CCCCHHHHHHHHHHh-CC-CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHH---HhCCCCCeEEe
Confidence 344455565555432 22 45678999999999998777653 4799999999999999876432 1222 356788
Q ss_pred ccCCCCCCCCCccceEEEe
Q 030823 150 GDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 150 ~D~e~LPf~~~sfDlV~s~ 168 (171)
+|...+|+++++||+|+++
T Consensus 237 ~D~~~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATD 255 (329)
T ss_pred cchhcCCcccCCCCEEEEC
Confidence 9999999989999999986
No 88
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.92 E-value=7.2e-09 Score=84.93 Aligned_cols=92 Identities=13% Similarity=0.075 Sum_probs=67.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030823 67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC 146 (171)
Q Consensus 67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~ 146 (171)
++++=.....+++.+++.+. ..+..+|||+|||+|.++..|.+.+ .+|+++|+++.|++.+++.. ....++.
T Consensus 7 ~gq~fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~----~~~~~v~ 78 (253)
T TIGR00755 7 LGQNFLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLL----SLYERLE 78 (253)
T ss_pred CCCccCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHh----CcCCcEE
Confidence 34433333455556655442 2356899999999999999999865 57999999999999997643 1134577
Q ss_pred EEEccCCCCCCCCCccc---eEEEe
Q 030823 147 FVVGDEEFLPLKERYAC---RFFVL 168 (171)
Q Consensus 147 ~~~~D~e~LPf~~~sfD---lV~s~ 168 (171)
++.+|...+|++ ++| +|++|
T Consensus 79 v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 79 VIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred EEECchhcCChh--HcCCcceEEEc
Confidence 889999998875 566 77776
No 89
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=2.2e-09 Score=85.93 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=59.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee-EEEccCCCCC-CCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC-FVVGDEEFLP-LKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~-~~~~D~e~LP-f~~~sfDlV~s~ 168 (171)
...+|++|||||..-..+.- .++-.|+++|+++.|-+.+..... .+...++. |++++.|++| ++++|+|.|++.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~--E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~T 152 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAA--EKKPLQVERFVVADGENLPQLADGSYDTVVCT 152 (252)
T ss_pred ccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHh--hccCcceEEEEeechhcCcccccCCeeeEEEE
Confidence 35689999999998877763 256799999999999999875431 12334566 8999999999 999999999975
No 90
>PHA03412 putative methyltransferase; Provisional
Probab=98.91 E-value=6.7e-09 Score=84.88 Aligned_cols=69 Identities=9% Similarity=-0.007 Sum_probs=56.3
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC---CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~---~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
..+|||+|||+|.++..+.+.. +..+|+++|+++.|++.|++. ...+.++.+|....++ +++||+|++|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-------~~~~~~~~~D~~~~~~-~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-------VPEATWINADALTTEF-DTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-------ccCCEEEEcchhcccc-cCCccEEEEC
Confidence 5799999999999999887531 235899999999999999852 1246788899887775 5799999997
No 91
>PRK04266 fibrillarin; Provisional
Probab=98.91 E-value=1.1e-08 Score=82.96 Aligned_cols=74 Identities=7% Similarity=-0.024 Sum_probs=55.7
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC----CCCCCCccceE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKERYACRF 165 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~----LPf~~~sfDlV 165 (171)
.+..+|||+|||+|.++..+++..+.++|+++|++++|++...+... ...++.++.+|... .++ +++||+|
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~----~~~nv~~i~~D~~~~~~~~~l-~~~~D~i 145 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAE----ERKNIIPILADARKPERYAHV-VEKVDVI 145 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh----hcCCcEEEECCCCCcchhhhc-cccCCEE
Confidence 45689999999999999999875445699999999999997654321 12357778888764 223 3579999
Q ss_pred EEe
Q 030823 166 FVL 168 (171)
Q Consensus 166 ~s~ 168 (171)
++.
T Consensus 146 ~~d 148 (226)
T PRK04266 146 YQD 148 (226)
T ss_pred EEC
Confidence 974
No 92
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.91 E-value=8e-09 Score=91.16 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=58.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC----CCCCCCccce
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF----LPLKERYACR 164 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~----LPf~~~sfDl 164 (171)
.+..+|||+|||+|.++..|++.. .+|+|+|+|++|++.|++... ..+. ++.++++|.+. +++.+++||+
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~---~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~ 370 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENAR---RNGLDNVTFYHANLEEDFTDQPWALGGFDK 370 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHH---HcCCCceEEEEeChHHhhhhhhhhcCCCCE
Confidence 355799999999999999998743 799999999999999986432 1233 57889999753 3466788999
Q ss_pred EEEe
Q 030823 165 FFVL 168 (171)
Q Consensus 165 V~s~ 168 (171)
|+++
T Consensus 371 Vi~d 374 (443)
T PRK13168 371 VLLD 374 (443)
T ss_pred EEEC
Confidence 9975
No 93
>PRK14968 putative methyltransferase; Provisional
Probab=98.89 E-value=2e-08 Score=77.48 Aligned_cols=76 Identities=13% Similarity=-0.021 Sum_probs=56.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
.+..+|||+|||+|.++..++.. ..+++++|+|++|++.+++...........+.++.+|... ++.+++||+|+++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEEC
Confidence 34578999999999999999875 4799999999999999876432100111116677787654 4556699999976
No 94
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.88 E-value=1.1e-08 Score=85.47 Aligned_cols=74 Identities=11% Similarity=-0.032 Sum_probs=59.0
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF 166 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~ 166 (171)
..+.++|||||||.|.++..+++.+ ..+|+|+++|+++.+.++++.. ..+. ++.....|...++ +.||-|+
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~---~~gl~~~v~v~l~d~rd~~---e~fDrIv 142 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIA---ARGLEDNVEVRLQDYRDFE---EPFDRIV 142 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHH---HcCCCcccEEEeccccccc---cccceee
Confidence 3678999999999999999999865 5799999999999999987542 2443 3666667766665 3499999
Q ss_pred Eec
Q 030823 167 VLA 169 (171)
Q Consensus 167 s~~ 169 (171)
|..
T Consensus 143 Svg 145 (283)
T COG2230 143 SVG 145 (283)
T ss_pred ehh
Confidence 975
No 95
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.87 E-value=1.4e-08 Score=86.45 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=59.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
++..+|||+|||+|.++..+++..+ .+.|+++|++++|++.|++... ..+. ++.++.+|....+.+.++||+|++
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~---~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVR---RLGIENVIFVCGDGYYGVPEFAPYDVIFV 155 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH---HcCCCcEEEEeCChhhcccccCCccEEEE
Confidence 3558999999999999999987543 3579999999999999987442 1233 477888998777666678999998
Q ss_pred e
Q 030823 168 L 168 (171)
Q Consensus 168 ~ 168 (171)
.
T Consensus 156 ~ 156 (322)
T PRK13943 156 T 156 (322)
T ss_pred C
Confidence 5
No 96
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.85 E-value=2.4e-08 Score=78.87 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=57.7
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCC-CCCCCCccceE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEF-LPLKERYACRF 165 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~-LPf~~~sfDlV 165 (171)
.+..+|||+|||+|.++..++.. ++..+|+++|++++|++.+++... ..+ .++.++.+|... ++..++.||+|
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~---~~g~~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE---KFGVLNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence 45689999999999999887653 345799999999999999876542 122 256778888865 34445789999
Q ss_pred EEe
Q 030823 166 FVL 168 (171)
Q Consensus 166 ~s~ 168 (171)
+++
T Consensus 116 ~~~ 118 (198)
T PRK00377 116 FIG 118 (198)
T ss_pred EEC
Confidence 984
No 97
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.8e-08 Score=84.19 Aligned_cols=70 Identities=24% Similarity=0.256 Sum_probs=53.3
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEe
Q 030823 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
+|||+|||||.++..++...+...|+++|+|++.++.|++... ..+ .++.++.+|. .-++ .+.||+|+||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~---~~~l~~~~~~~~dl-f~~~-~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE---RNGLVRVLVVQSDL-FEPL-RGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH---HcCCccEEEEeeec-cccc-CCceeEEEeC
Confidence 7999999999999999987777899999999999999986432 233 3344455532 2233 3499999998
No 98
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.84 E-value=1.7e-08 Score=79.63 Aligned_cols=74 Identities=20% Similarity=0.070 Sum_probs=60.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF 166 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~ 166 (171)
...++|||+|||.|++...|++.+-...++|+|.|++.++.|+...+ ..+. .+.|.+.|+-.-.+.++.||+|.
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe---~~~~~n~I~f~q~DI~~~~~~~~qfdlvl 141 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAE---RDGFSNEIRFQQLDITDPDFLSGQFDLVL 141 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHH---hcCCCcceeEEEeeccCCcccccceeEEe
Confidence 34459999999999999999876545679999999999999876543 2333 38899999988788889999985
No 99
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.84 E-value=1.2e-08 Score=84.96 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=55.8
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC
Q 030823 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP 156 (171)
Q Consensus 79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LP 156 (171)
+.+++++. .++..+|||||||.|.++..+++++ ..+|+|+.+|++..+.++++.. ..+. .+.+.+.|...++
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~---~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIR---EAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHH---CSTSSSTEEEEES-GGG--
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEEeeccccC
Confidence 44555442 3577899999999999999999875 3699999999999999987653 3443 4667788877665
Q ss_pred CCCCccceEEEec
Q 030823 157 LKERYACRFFVLA 169 (171)
Q Consensus 157 f~~~sfDlV~s~~ 169 (171)
. +||.|+|..
T Consensus 126 ~---~fD~IvSi~ 135 (273)
T PF02353_consen 126 G---KFDRIVSIE 135 (273)
T ss_dssp ----S-SEEEEES
T ss_pred C---CCCEEEEEe
Confidence 4 999999975
No 100
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.83 E-value=1e-08 Score=84.18 Aligned_cols=76 Identities=13% Similarity=-0.007 Sum_probs=60.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~~~sfDlV~s~ 168 (171)
..+|||+|||+|.++..++.+....+|++||+.++|.+.|++.... +.-.-.+.++++|...+. +.-.+||+|+||
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 6899999999999999999876668999999999999999864321 111125788999988774 445689999997
No 101
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.83 E-value=2.4e-08 Score=89.71 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=56.5
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
..+|||+|||+|.++..++...+..+|+++|+|+++++.|++... ..++ .+.++.+|... ++++++||+|+||
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~---~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAI---KYEVTDRIQIIHSNWFE-NIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH---HcCCccceeeeecchhh-hCcCCCccEEEEC
Confidence 468999999999999988765566799999999999999986432 1222 46778888532 3446789999996
No 102
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.82 E-value=1.5e-08 Score=85.28 Aligned_cols=94 Identities=15% Similarity=0.061 Sum_probs=67.4
Q ss_pred CCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeE
Q 030823 68 RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF 147 (171)
Q Consensus 68 ~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~ 147 (171)
+|+=.....+++.+++.+. ..+..+|||||||+|.++..|.+. ..+|+++|+++.|++.+++.... .....++.+
T Consensus 15 GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~-~~~~~~v~i 89 (294)
T PTZ00338 15 GQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQN-SPLASKLEV 89 (294)
T ss_pred CccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHh-cCCCCcEEE
Confidence 4443334455566655442 235689999999999999999874 36899999999999999875421 011235778
Q ss_pred EEccCCCCCCCCCccceEEEe
Q 030823 148 VVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 148 ~~~D~e~LPf~~~sfDlV~s~ 168 (171)
+.+|+...++ ..||.|++|
T Consensus 90 i~~Dal~~~~--~~~d~VvaN 108 (294)
T PTZ00338 90 IEGDALKTEF--PYFDVCVAN 108 (294)
T ss_pred EECCHhhhcc--cccCEEEec
Confidence 9999877766 368999886
No 103
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.82 E-value=4.4e-08 Score=77.11 Aligned_cols=91 Identities=10% Similarity=0.036 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030823 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG 150 (171)
Q Consensus 72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~ 150 (171)
..+.++...+.+.+. + .+..+|||+|||+|.++..++...+..+|+++|+|++|++.+++... ..+. ++.++.+
T Consensus 23 ~t~~~v~~~l~~~l~-~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~---~~~~~~v~~~~~ 97 (196)
T PRK07402 23 LTKREVRLLLISQLR-L-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD---RFGVKNVEVIEG 97 (196)
T ss_pred CCHHHHHHHHHHhcC-C-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH---HhCCCCeEEEEC
Confidence 444555555555442 2 35579999999999999988765556799999999999999987542 1222 4777888
Q ss_pred cCCC-CCCCCCccceEEE
Q 030823 151 DEEF-LPLKERYACRFFV 167 (171)
Q Consensus 151 D~e~-LPf~~~sfDlV~s 167 (171)
|.+. ++.....+|.|+.
T Consensus 98 d~~~~~~~~~~~~d~v~~ 115 (196)
T PRK07402 98 SAPECLAQLAPAPDRVCI 115 (196)
T ss_pred chHHHHhhCCCCCCEEEE
Confidence 8753 3332334677655
No 104
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.81 E-value=3.6e-08 Score=78.41 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCC-CCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLK-ERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~-~~sfDlV~s~ 168 (171)
...+|||+|||+|.++..+...+ .+++++|++++|+..+++... ..+. ++.+..+|.+.++.+ +++||+|+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAK---KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHH---HcCCCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 35789999999999999887743 579999999999999876432 1333 477888888877755 4899999986
Q ss_pred c
Q 030823 169 A 169 (171)
Q Consensus 169 ~ 169 (171)
.
T Consensus 120 ~ 120 (224)
T TIGR01983 120 E 120 (224)
T ss_pred h
Confidence 3
No 105
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.80 E-value=2.9e-08 Score=81.61 Aligned_cols=72 Identities=14% Similarity=-0.054 Sum_probs=54.6
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCC-CCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL-KERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf-~~~sfDlV~s~ 168 (171)
..+|||+|||+|.++..+....+..+|+++|+|+.+++.+++... ..+ ..++.+|... ++- ..+.||+|++|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~---~~~--~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA---DAG--GTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcC--CEEEEeechhhcchhcCCCEeEEEEC
Confidence 358999999999999998865555699999999999999986432 122 3578888754 331 13689999987
No 106
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.80 E-value=3.9e-08 Score=79.10 Aligned_cols=77 Identities=9% Similarity=-0.109 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh----------hccCCCceeEEEccCCCCCCC-C
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD----------AHNDNIETCFVVGDEEFLPLK-E 159 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~----------~~~~~~~~~~~~~D~e~LPf~-~ 159 (171)
+..+|||+|||.|..+..|++++ -+|+|+|+|+.+++.+.++..- ....+.++.++++|...++.. .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 44799999999999999999854 7999999999999986432100 001234578899999888753 3
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.||+|+-.+
T Consensus 112 ~~fD~i~D~~ 121 (213)
T TIGR03840 112 GPVDAVYDRA 121 (213)
T ss_pred CCcCEEEech
Confidence 5789887643
No 107
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.79 E-value=5e-08 Score=79.89 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=49.4
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
..+..+|||+|||+|.++..+...+ ..+|+++|+|+.|++.+++... ..++. +...++..+.+||+|+++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~---~~~~~------~~~~~~~~~~~fD~Vvan 186 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAE---LNGVE------LNVYLPQGDLKADVIVAN 186 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH---HcCCC------ceEEEccCCCCcCEEEEc
Confidence 3467899999999999998877644 3479999999999999986432 12221 101122222389999987
Q ss_pred c
Q 030823 169 A 169 (171)
Q Consensus 169 ~ 169 (171)
.
T Consensus 187 i 187 (250)
T PRK00517 187 I 187 (250)
T ss_pred C
Confidence 4
No 108
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.77 E-value=3e-08 Score=87.11 Aligned_cols=92 Identities=13% Similarity=0.010 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc--eeEEE
Q 030823 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE--TCFVV 149 (171)
Q Consensus 72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~--~~~~~ 149 (171)
++++..+..+...+. ..+..+|||+|||+|..+..+++..+.++|+++|++++|++.+++... ..+.. +.+..
T Consensus 221 ~~Qd~~s~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~---r~g~~~~v~~~~ 295 (426)
T TIGR00563 221 TVQDASAQWVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLK---RLGLTIKAETKD 295 (426)
T ss_pred EEECHHHHHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEec
Confidence 345566666555553 245689999999999999998875445799999999999999987543 23333 34466
Q ss_pred ccCCCCCC--CCCccceEEEe
Q 030823 150 GDEEFLPL--KERYACRFFVL 168 (171)
Q Consensus 150 ~D~e~LPf--~~~sfDlV~s~ 168 (171)
+|...+++ ++++||.|++.
T Consensus 296 ~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 296 GDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred cccccccccccccccCEEEEc
Confidence 77665554 57899999964
No 109
>PLN03075 nicotianamine synthase; Provisional
Probab=98.76 E-value=5.3e-08 Score=82.00 Aligned_cols=78 Identities=9% Similarity=0.051 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCcHHHHHH--hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823 91 TFPTALCLGGSLEAVRRLL--RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF 166 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L--~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~ 166 (171)
+..+|+|||||.|-++..+ +..++.++++++|.+++|++.|++.... ..++ .+.|..+|+..++-..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--DPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--ccCccCCcEEEECchhhcccccCCcCEEE
Confidence 6689999999988554433 3445778999999999999999875421 1333 58899999877653457899999
Q ss_pred Eecc
Q 030823 167 VLAL 170 (171)
Q Consensus 167 s~~~ 170 (171)
+.++
T Consensus 201 ~~AL 204 (296)
T PLN03075 201 LAAL 204 (296)
T ss_pred Eecc
Confidence 9864
No 110
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.7e-08 Score=82.79 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=56.6
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
..+|||+|||.|.++..+++..+..+++++|.+...++.+++... ..+++...+..+.-..+.++ +||+|+||
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~---~N~~~~~~v~~s~~~~~v~~-kfd~IisN 231 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA---ANGVENTEVWASNLYEPVEG-KFDLIISN 231 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH---HcCCCccEEEEecccccccc-cccEEEeC
Confidence 458999999999999999988888899999999999999986432 23343324444444555555 99999997
No 111
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.76 E-value=2.7e-08 Score=79.70 Aligned_cols=67 Identities=15% Similarity=-0.022 Sum_probs=52.7
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------CCCC
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKER 160 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--------f~~~ 160 (171)
.+..+|||||||||.++..+.+.. +.++|+++|+++ |. +..++.++++|.+..+ +.++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~------------~~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD------------PIVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc------------CCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 456799999999999999887754 346999999998 31 1124678999988863 7789
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
+||+|+|+.
T Consensus 117 ~~D~V~S~~ 125 (209)
T PRK11188 117 KVQVVMSDM 125 (209)
T ss_pred CCCEEecCC
Confidence 999999864
No 112
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.74 E-value=6.7e-08 Score=81.43 Aligned_cols=79 Identities=16% Similarity=0.069 Sum_probs=53.8
Q ss_pred HHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccce
Q 030823 85 LEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACR 164 (171)
Q Consensus 85 L~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDl 164 (171)
|.....+..+|||+|||||-++..-+.. ...+|+++|+++..+..+++... ..++.....+..... ...+.||+
T Consensus 155 l~~~~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~---~N~~~~~~~v~~~~~--~~~~~~dl 228 (295)
T PF06325_consen 155 LEKYVKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAE---LNGVEDRIEVSLSED--LVEGKFDL 228 (295)
T ss_dssp HHHHSSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHH---HTT-TTCEEESCTSC--TCCS-EEE
T ss_pred HHHhccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHH---HcCCCeeEEEEEecc--cccccCCE
Confidence 3444566789999999999999887774 34689999999999999987432 344433333332222 33499999
Q ss_pred EEEec
Q 030823 165 FFVLA 169 (171)
Q Consensus 165 V~s~~ 169 (171)
|++|=
T Consensus 229 vvANI 233 (295)
T PF06325_consen 229 VVANI 233 (295)
T ss_dssp EEEES
T ss_pred EEECC
Confidence 99984
No 113
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.1e-07 Score=75.11 Aligned_cols=71 Identities=15% Similarity=0.076 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
...+|+|+|||||.++...+-. ....|+|+|+.+++++.+++... .-..++.|+++|...+. +.||.|++|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~---~l~g~v~f~~~dv~~~~---~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAE---ELLGDVEFVVADVSDFR---GKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHH---hhCCceEEEEcchhhcC---CccceEEEC
Confidence 3457999999999998777653 34799999999999999987542 23447889999988876 456677765
No 114
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.72 E-value=9.5e-08 Score=64.48 Aligned_cols=74 Identities=22% Similarity=0.108 Sum_probs=56.5
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-CCCccceEEEecc
Q 030823 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KERYACRFFVLAL 170 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf-~~~sfDlV~s~~~ 170 (171)
+++|+|||+|.++..+.+ ....+++++|++++++..+++... ......+.++.+|....+. ..+.||+|+++..
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAA--ALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHh--cccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999998887 456799999999999998873211 1122356778888777653 5789999998753
No 115
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.72 E-value=6.8e-08 Score=77.60 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF 154 (171)
Q Consensus 77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~ 154 (171)
+...|.+.|. .++.++|||||||+|.++..|+.. ++.+.|+++|..+++++.|++... ..+. ++.++++|...
T Consensus 60 ~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~---~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 60 MVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLA---RLGIDNVEVVVGDGSE 134 (209)
T ss_dssp HHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHH---HHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHH---HhccCceeEEEcchhh
Confidence 3444555444 356799999999999999988763 345689999999999999987653 2233 68889999765
Q ss_pred CCCCCCccceEEEec
Q 030823 155 LPLKERYACRFFVLA 169 (171)
Q Consensus 155 LPf~~~sfDlV~s~~ 169 (171)
---+...||.|++++
T Consensus 135 g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTA 149 (209)
T ss_dssp TTGGG-SEEEEEESS
T ss_pred ccccCCCcCEEEEee
Confidence 433567899999865
No 116
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=5.3e-08 Score=85.79 Aligned_cols=91 Identities=14% Similarity=0.036 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030823 73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG 150 (171)
Q Consensus 73 l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~ 150 (171)
+++..+..+...+. ..+..+|||+|||+|..+..+++.. +.++|+++|++++|++.+++... ..+. ++.++++
T Consensus 236 ~qd~~s~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~---r~g~~~v~~~~~ 310 (434)
T PRK14901 236 VQDRSAQLVAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQ---RLGLKSIKILAA 310 (434)
T ss_pred EECHHHHHHHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHH---HcCCCeEEEEeC
Confidence 34444444443332 2456899999999999999887642 34699999999999999987543 2343 5778889
Q ss_pred cCCCCC----CCCCccceEEEe
Q 030823 151 DEEFLP----LKERYACRFFVL 168 (171)
Q Consensus 151 D~e~LP----f~~~sfDlV~s~ 168 (171)
|...++ +.+++||.|++.
T Consensus 311 D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 311 DSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred ChhhcccccccccccCCEEEEe
Confidence 998876 557899999974
No 117
>PRK00811 spermidine synthase; Provisional
Probab=98.70 E-value=9.3e-08 Score=79.90 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=61.3
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc---cCCCceeEEEccCCC-CCCCCCccceE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETCFVVGDEEF-LPLKERYACRF 165 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~---~~~~~~~~~~~D~e~-LPf~~~sfDlV 165 (171)
....+||+||||+|.++..+.+.....+|+++|++++|++.+++...... ..+.++.++.+|+.. ++..+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 34579999999999999999876567899999999999999987532100 023467788899754 34457899999
Q ss_pred EEec
Q 030823 166 FVLA 169 (171)
Q Consensus 166 ~s~~ 169 (171)
++.+
T Consensus 155 i~D~ 158 (283)
T PRK00811 155 IVDS 158 (283)
T ss_pred EECC
Confidence 9864
No 118
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.69 E-value=4.2e-08 Score=76.71 Aligned_cols=67 Identities=18% Similarity=0.071 Sum_probs=50.5
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------CCCC
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKER 160 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--------f~~~ 160 (171)
.+..+|||+|||||.++..+.... +..+|+++|+|+.| . .. ++.++.+|....+ ++++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~------~~--~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P------IE--NVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c------CC--CceEEEeeCCChhHHHHHHHHhCCC
Confidence 456899999999999999887654 44689999999866 1 12 2556778876543 4577
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
+||+|++++
T Consensus 98 ~~D~V~~~~ 106 (188)
T TIGR00438 98 KVDVVMSDA 106 (188)
T ss_pred CccEEEcCC
Confidence 899999853
No 119
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.69 E-value=3.7e-07 Score=73.30 Aligned_cols=75 Identities=8% Similarity=-0.048 Sum_probs=57.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CCCCccceEEEe
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKERYACRFFVL 168 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f~~~sfDlV~s~ 168 (171)
.+..+|||||||+|.++..+.+. ..+++++|++++++..+++... ..+..+.++.++.+.++ ..++.||+|+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~ 121 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHAL---ESGLKIDYRQTTAEELAAEHPGQFDVVTCM 121 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHH---HcCCceEEEecCHHHhhhhcCCCccEEEEh
Confidence 35678999999999999988874 3689999999999999876431 12335667778877765 456899999875
Q ss_pred c
Q 030823 169 A 169 (171)
Q Consensus 169 ~ 169 (171)
.
T Consensus 122 ~ 122 (233)
T PRK05134 122 E 122 (233)
T ss_pred h
Confidence 3
No 120
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=6.5e-08 Score=81.48 Aligned_cols=78 Identities=13% Similarity=-0.026 Sum_probs=54.4
Q ss_pred cccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce--eEEEccCCCCCCCCCccceE
Q 030823 88 CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET--CFVVGDEEFLPLKERYACRF 165 (171)
Q Consensus 88 i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~--~~~~~D~e~LPf~~~sfDlV 165 (171)
...++.+|||+|||+|-++...++.+ ..+|+|+|+.|-.++.+++.. ...++.. .....+....+ ..+.||+|
T Consensus 159 ~~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa---~~N~v~~~~~~~~~~~~~~~-~~~~~DvI 233 (300)
T COG2264 159 LLKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENA---RLNGVELLVQAKGFLLLEVP-ENGPFDVI 233 (300)
T ss_pred hhcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHH---HHcCCchhhhcccccchhhc-ccCcccEE
Confidence 34578999999999999999888753 468999999999999998743 2334331 11122222222 23699999
Q ss_pred EEecc
Q 030823 166 FVLAL 170 (171)
Q Consensus 166 ~s~~~ 170 (171)
++|=|
T Consensus 234 VANIL 238 (300)
T COG2264 234 VANIL 238 (300)
T ss_pred Eehhh
Confidence 99843
No 121
>PTZ00146 fibrillarin; Provisional
Probab=98.69 E-value=7.4e-08 Score=80.98 Aligned_cols=99 Identities=10% Similarity=0.048 Sum_probs=66.2
Q ss_pred CCCChHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCc
Q 030823 67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE 144 (171)
Q Consensus 67 ~~~~~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~ 144 (171)
|+.-++.+..+|..+..-+..+ ..+..+|||+|||+|.++..++... +.+.|+++|+|++|++...+.. ....+
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a----k~r~N 182 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA----KKRPN 182 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh----hhcCC
Confidence 4444566666676665544444 2466899999999999999998743 3579999999997553332211 01135
Q ss_pred eeEEEccCCC---CCCCCCccceEEEec
Q 030823 145 TCFVVGDEEF---LPLKERYACRFFVLA 169 (171)
Q Consensus 145 ~~~~~~D~e~---LPf~~~sfDlV~s~~ 169 (171)
+.++++|+.. +++..++||+|++..
T Consensus 183 I~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 183 IVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CEEEECCccChhhhhcccCCCCEEEEeC
Confidence 7778888753 233446899999854
No 122
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=5.7e-08 Score=85.68 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEE
Q 030823 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVV 149 (171)
Q Consensus 72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~ 149 (171)
++++..+..+...+ .+ .+..+|||+|||+|..+.++++.. +.++|+++|+|++|++.+++... ..+. ++.+++
T Consensus 220 ~~Qd~~s~~~~~~l-~~-~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~---r~g~~~v~~~~ 294 (431)
T PRK14903 220 TVQGESSQIVPLLM-EL-EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAK---RLKLSSIEIKI 294 (431)
T ss_pred EEECHHHHHHHHHh-CC-CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH---HcCCCeEEEEE
Confidence 45555554443322 22 356799999999999998887643 45799999999999999987543 2343 467888
Q ss_pred ccCCCCC-CCCCccceEEEe
Q 030823 150 GDEEFLP-LKERYACRFFVL 168 (171)
Q Consensus 150 ~D~e~LP-f~~~sfDlV~s~ 168 (171)
+|...++ +.+++||.|++.
T Consensus 295 ~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 295 ADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CchhhhhhhhhccCCEEEEC
Confidence 9988877 557899999974
No 123
>PRK04457 spermidine synthase; Provisional
Probab=98.68 E-value=6.1e-08 Score=80.19 Aligned_cols=80 Identities=5% Similarity=0.004 Sum_probs=60.6
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCCCCCccceEEEe
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKERYACRFFVL 168 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf~~~sfDlV~s~ 168 (171)
.+..+|||||||+|.++..+....+..+|+++|++++|++.|++.... .....++.++++|... ++-.+++||+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL-PENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC-CCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 345789999999999999998766778999999999999999875310 1112457778898643 34335789999986
Q ss_pred cc
Q 030823 169 AL 170 (171)
Q Consensus 169 ~~ 170 (171)
+.
T Consensus 144 ~~ 145 (262)
T PRK04457 144 GF 145 (262)
T ss_pred CC
Confidence 53
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.68 E-value=8e-08 Score=84.80 Aligned_cols=91 Identities=14% Similarity=0.024 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030823 73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG 150 (171)
Q Consensus 73 l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~ 150 (171)
++++.+..+...+. + .+..+|||+|||+|..+..+++.. +.++|+++|+++++++.+++... ..+. ++.++++
T Consensus 234 ~qd~~s~lv~~~l~-~-~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~---~~g~~~v~~~~~ 308 (444)
T PRK14902 234 IQDESSMLVAPALD-P-KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAK---RLGLTNIETKAL 308 (444)
T ss_pred EEChHHHHHHHHhC-C-CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEeC
Confidence 34444444433332 2 355789999999999999888643 45799999999999999987542 2333 4778889
Q ss_pred cCCCCC--CCCCccceEEEec
Q 030823 151 DEEFLP--LKERYACRFFVLA 169 (171)
Q Consensus 151 D~e~LP--f~~~sfDlV~s~~ 169 (171)
|...++ ++ ++||+|++.+
T Consensus 309 D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 309 DARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred Ccccccchhc-ccCCEEEEcC
Confidence 987764 43 7899999753
No 125
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.65 E-value=1.9e-07 Score=75.31 Aligned_cols=76 Identities=12% Similarity=-0.051 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh----------ccCCCceeEEEccCCCCCCCC-
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA----------HNDNIETCFVVGDEEFLPLKE- 159 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~----------~~~~~~~~~~~~D~e~LPf~~- 159 (171)
+..+|||+|||.|..+..|++++ .+|+|+|+|+..++.+.++..-. .....++.+.++|...++..+
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 44799999999999999999854 69999999999999874321000 001235778899998886443
Q ss_pred CccceEEEe
Q 030823 160 RYACRFFVL 168 (171)
Q Consensus 160 ~sfDlV~s~ 168 (171)
+.||+|+-.
T Consensus 115 ~~fd~v~D~ 123 (218)
T PRK13255 115 ADVDAVYDR 123 (218)
T ss_pred CCeeEEEeh
Confidence 689999854
No 126
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.65 E-value=1.7e-07 Score=74.81 Aligned_cols=94 Identities=13% Similarity=-0.041 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEE
Q 030823 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFV 148 (171)
Q Consensus 70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~ 148 (171)
+.+..+.+.+.+.+.+... .+..+|||+|||+|.++..+..++ ..+|+++|.+++.++.+++... ..+. ++.++
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~---~~~~~~v~~~ 107 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLA---TLKAGNARVV 107 (199)
T ss_pred cCcCCHHHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHH---HhCCCcEEEE
Confidence 4445555555555544332 234689999999999998644333 4799999999999999876432 1222 57778
Q ss_pred EccCCC-CCCCCCccceEEEe
Q 030823 149 VGDEEF-LPLKERYACRFFVL 168 (171)
Q Consensus 149 ~~D~e~-LPf~~~sfDlV~s~ 168 (171)
++|... ++...++||+|+++
T Consensus 108 ~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 108 NTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred EchHHHHHhhcCCCceEEEEC
Confidence 888754 33334579999985
No 127
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.65 E-value=1.7e-07 Score=78.61 Aligned_cols=74 Identities=8% Similarity=0.033 Sum_probs=58.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
.+..+|||||||+|.++..+.+.++..+++++|+ ++|++.+++... ..+. ++.++.+|....++++ +|+|++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~gl~~rv~~~~~d~~~~~~~~--~D~v~~ 221 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA---EKGVADRMRGIAVDIYKESYPE--ADAVLF 221 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH---hCCccceEEEEecCccCCCCCC--CCEEEe
Confidence 3557999999999999999998777789999998 799999876432 2332 4788999987767653 699876
Q ss_pred ec
Q 030823 168 LA 169 (171)
Q Consensus 168 ~~ 169 (171)
+.
T Consensus 222 ~~ 223 (306)
T TIGR02716 222 CR 223 (306)
T ss_pred Eh
Confidence 54
No 128
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.64 E-value=1.5e-07 Score=82.66 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhc-c-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCC
Q 030823 77 VAENLLDRLEDC-R-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEE 153 (171)
Q Consensus 77 va~~l~~rL~~i-~-~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e 153 (171)
.++.|.+++... . .+..+|||+|||+|.++..|++. ..+|+++|++++|++.|++... ..+. ++.++.+|.+
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~---~~~~~nv~~~~~d~~ 350 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAE---LNGIANVEFLAGTLE 350 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHH---HhCCCceEEEeCCHH
Confidence 344444443332 1 34578999999999999999874 3699999999999999986432 1233 6888999976
Q ss_pred C----CCCCCCccceEEEe
Q 030823 154 F----LPLKERYACRFFVL 168 (171)
Q Consensus 154 ~----LPf~~~sfDlV~s~ 168 (171)
. +++.+++||+|+..
T Consensus 351 ~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 351 TVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred HHHHHHHhcCCCCCEEEEC
Confidence 4 23556789999864
No 129
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.63 E-value=1e-07 Score=78.81 Aligned_cols=76 Identities=5% Similarity=-0.094 Sum_probs=59.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
++..+|||+|||+|..+..++... +.+.|+++|+++.|++.+++... ..+. ++.++.+|...++...+.||.|++
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~---~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN---RCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH---HcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 456899999999999998887643 34699999999999999987543 2333 567788898877766678999997
Q ss_pred e
Q 030823 168 L 168 (171)
Q Consensus 168 ~ 168 (171)
.
T Consensus 147 D 147 (264)
T TIGR00446 147 D 147 (264)
T ss_pred c
Confidence 4
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=1.6e-07 Score=83.07 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=58.5
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
.+..+|||+|||+|..+..+.+.. ..++|+++|+|++|++.+++... ..++ ++.++++|+..++ ++++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~---~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHAS---ALGITIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH---HhCCCeEEEEeCcccccc-cCCCCCEEEE
Confidence 355799999999999888776532 34699999999999999987543 2343 4778899998876 5679999996
No 131
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.61 E-value=5.2e-07 Score=71.18 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEcc
Q 030823 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD 151 (171)
Q Consensus 72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D 151 (171)
.-++++-...+..|. .++.++++|||||||.++..++..++..+|+++|-++++++..++.+.. ....++..+.++
T Consensus 17 ~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~--fg~~n~~vv~g~ 92 (187)
T COG2242 17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAAR--FGVDNLEVVEGD 92 (187)
T ss_pred CcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHH--hCCCcEEEEecc
Confidence 344455444445554 4677899999999999999998666889999999999999988764321 122256677888
Q ss_pred CC-CCCCCCCccceEEEec
Q 030823 152 EE-FLPLKERYACRFFVLA 169 (171)
Q Consensus 152 ~e-~LPf~~~sfDlV~s~~ 169 (171)
+- .|+- ..+||.|+...
T Consensus 93 Ap~~L~~-~~~~daiFIGG 110 (187)
T COG2242 93 APEALPD-LPSPDAIFIGG 110 (187)
T ss_pred chHhhcC-CCCCCEEEECC
Confidence 64 4442 23899998753
No 132
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.61 E-value=1.7e-07 Score=79.08 Aligned_cols=77 Identities=16% Similarity=0.022 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL 170 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~ 170 (171)
...+|||||||.|.++-.+..++ .+.|+|+|++...+.+......- ......+.++-.-.|.+|. .+.||+|+|.+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~-lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHF-LGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHH-hCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 45799999999999998888764 46899999999888775432211 1112223333357789997 899999999876
No 133
>PLN02672 methionine S-methyltransferase
Probab=98.59 E-value=2.1e-07 Score=89.67 Aligned_cols=76 Identities=12% Similarity=-0.134 Sum_probs=56.4
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc------------cCC--CceeEEEccCCCCCCC
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH------------NDN--IETCFVVGDEEFLPLK 158 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~------------~~~--~~~~~~~~D~e~LPf~ 158 (171)
.+|||+|||+|.++..++...+..+|+++|+|+++++.|++...... .+. -++.++.+|.....-.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 58999999999999999876666799999999999999976432100 001 1478899997543311
Q ss_pred -CCccceEEEe
Q 030823 159 -ERYACRFFVL 168 (171)
Q Consensus 159 -~~sfDlV~s~ 168 (171)
...||+|+||
T Consensus 200 ~~~~fDlIVSN 210 (1082)
T PLN02672 200 NNIELDRIVGC 210 (1082)
T ss_pred cCCceEEEEEC
Confidence 2369999997
No 134
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.5e-07 Score=72.29 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC
Q 030823 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL 155 (171)
Q Consensus 77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L 155 (171)
+...|++.|. .++.++|||||||+|..+..|++. .++|+.+|..++..+.|++... ..+. ++..+++|...=
T Consensus 60 ~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~---~lg~~nV~v~~gDG~~G 132 (209)
T COG2518 60 MVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLE---TLGYENVTVRHGDGSKG 132 (209)
T ss_pred HHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHH---HcCCCceEEEECCcccC
Confidence 4455655554 357799999999999999999984 4699999999999999987543 2444 677888987533
Q ss_pred CCCCCccceEEEec
Q 030823 156 PLKERYACRFFVLA 169 (171)
Q Consensus 156 Pf~~~sfDlV~s~~ 169 (171)
=-+...||.|+.++
T Consensus 133 ~~~~aPyD~I~Vta 146 (209)
T COG2518 133 WPEEAPYDRIIVTA 146 (209)
T ss_pred CCCCCCcCEEEEee
Confidence 22468999999875
No 135
>PRK01581 speE spermidine synthase; Validated
Probab=98.56 E-value=2.7e-07 Score=79.75 Aligned_cols=80 Identities=13% Similarity=0.050 Sum_probs=60.5
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh----h-hccCCCceeEEEccCCC-CCCCCCccc
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ----D-AHNDNIETCFVVGDEEF-LPLKERYAC 163 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~----~-~~~~~~~~~~~~~D~e~-LPf~~~sfD 163 (171)
....+||++|||+|..++.+.+..+..+|+++|++++|++.|++... + ....+.++..+++|+.. ++-.++.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 44579999999999999888876667899999999999999985210 0 00123467778888764 455567899
Q ss_pred eEEEec
Q 030823 164 RFFVLA 169 (171)
Q Consensus 164 lV~s~~ 169 (171)
+|++..
T Consensus 229 VIIvDl 234 (374)
T PRK01581 229 VIIIDF 234 (374)
T ss_pred EEEEcC
Confidence 999864
No 136
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.55 E-value=2.9e-07 Score=79.77 Aligned_cols=73 Identities=10% Similarity=0.001 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCC-CCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPL-KERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf-~~~sfDlV~s~ 168 (171)
+..+|||+|||+|.++..++.. ..+|+|+|+++.+++.+++... ..++ ++.|+.+|.+.+.. ..+.||+|+.+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~---~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQ---MLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHH---HcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 3468999999999999999863 4799999999999999986432 2333 68889999865431 22469999864
No 137
>PRK04148 hypothetical protein; Provisional
Probab=98.54 E-value=7.8e-07 Score=66.88 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCCcH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC
Q 030823 76 AVAENLLDRLEDCRKTFPTALCLGGSLEA-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (171)
Q Consensus 76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~-l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~ 154 (171)
.+++.+.+.+.. .+..++||||||+|. ++..|.+.+ ..|+++|++++.++.+++. + +..+++|...
T Consensus 3 ~i~~~l~~~~~~--~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~-------~--~~~v~dDlf~ 69 (134)
T PRK04148 3 TIAEFIAENYEK--GKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL-------G--LNAFVDDLFN 69 (134)
T ss_pred HHHHHHHHhccc--ccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh-------C--CeEEECcCCC
Confidence 455555555432 234789999999995 898998743 6999999999999988652 2 4568888877
Q ss_pred CCCC-CCccceEEEe
Q 030823 155 LPLK-ERYACRFFVL 168 (171)
Q Consensus 155 LPf~-~~sfDlV~s~ 168 (171)
-++. =+.+|+|.|.
T Consensus 70 p~~~~y~~a~liysi 84 (134)
T PRK04148 70 PNLEIYKNAKLIYSI 84 (134)
T ss_pred CCHHHHhcCCEEEEe
Confidence 6654 4788999875
No 138
>PRK03612 spermidine synthase; Provisional
Probab=98.47 E-value=7.4e-07 Score=80.38 Aligned_cols=80 Identities=18% Similarity=0.092 Sum_probs=59.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh--hhc---cCCCceeEEEccCCC-CCCCCCccc
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ--DAH---NDNIETCFVVGDEEF-LPLKERYAC 163 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~--~~~---~~~~~~~~~~~D~e~-LPf~~~sfD 163 (171)
++..+|||+|||+|.+++.+.+.....+|+++|++++|++.+++... ... ..+.++.++++|... +.-.+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 35679999999999999998875445899999999999999987210 000 123457778898765 333457999
Q ss_pred eEEEec
Q 030823 164 RFFVLA 169 (171)
Q Consensus 164 lV~s~~ 169 (171)
+|++..
T Consensus 376 vIi~D~ 381 (521)
T PRK03612 376 VIIVDL 381 (521)
T ss_pred EEEEeC
Confidence 999874
No 139
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.47 E-value=6.8e-07 Score=76.19 Aligned_cols=76 Identities=11% Similarity=-0.013 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEE-ccCCCCC----CCCCccc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVV-GDEEFLP----LKERYAC 163 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~-~D~e~LP----f~~~sfD 163 (171)
...++||||||+|.+...|..+.+..+++|+|+++.+++.|++.... +++. .+.+.. .+...+. .+++.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~--Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISA--NPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh--ccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 45789999999998888887655567999999999999999875431 2223 344432 3333222 2467999
Q ss_pred eEEEe
Q 030823 164 RFFVL 168 (171)
Q Consensus 164 lV~s~ 168 (171)
+|+||
T Consensus 192 livcN 196 (321)
T PRK11727 192 ATLCN 196 (321)
T ss_pred EEEeC
Confidence 99997
No 140
>PLN02366 spermidine synthase
Probab=98.43 E-value=1.7e-06 Score=73.37 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=60.3
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCCC-C-CCCCccceE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFL-P-LKERYACRF 165 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~L-P-f~~~sfDlV 165 (171)
.+..+||+||||+|.+.+.+.+..+..+|+.+|++++|++.+++..... ...+.++.++++|+... . .+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4568999999999999999987656789999999999999998743210 01234677888996432 1 236789999
Q ss_pred EEec
Q 030823 166 FVLA 169 (171)
Q Consensus 166 ~s~~ 169 (171)
++-+
T Consensus 170 i~D~ 173 (308)
T PLN02366 170 IVDS 173 (308)
T ss_pred EEcC
Confidence 9854
No 141
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.40 E-value=2.6e-06 Score=69.33 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=34.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHH
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL 130 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~ 130 (171)
+..++||+|||||.++..+.+. +..+|+++|++++|+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 4568999999999999999885 35799999999998876
No 142
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=3.3e-06 Score=70.39 Aligned_cols=95 Identities=19% Similarity=0.131 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhcc-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEE--
Q 030823 73 FVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV-- 149 (171)
Q Consensus 73 l~~~va~~l~~rL~~i~-~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~-- 149 (171)
-.++.++.+++.+.... .....+||+|||+|.++..+....+...|+++|.|+..+..|.+........+ .+..+.
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g-~i~v~~~~ 207 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSG-RIEVIHNI 207 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcC-ceEEEecc
Confidence 34555555555544321 23458999999999999999876677899999999999999876443111111 111121
Q ss_pred --ccC-CCCCCCCCccceEEEe
Q 030823 150 --GDE-EFLPLKERYACRFFVL 168 (171)
Q Consensus 150 --~D~-e~LPf~~~sfDlV~s~ 168 (171)
.|. +..|..++..|+++||
T Consensus 208 me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 208 MESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred cccccccccccccCceeEEecC
Confidence 221 2445678999999997
No 143
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.37 E-value=2.9e-06 Score=69.01 Aligned_cols=76 Identities=12% Similarity=-0.054 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh----------hhccCCCceeEEEccCCCCCCCC-
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ----------DAHNDNIETCFVVGDEEFLPLKE- 159 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~----------~~~~~~~~~~~~~~D~e~LPf~~- 159 (171)
+..+||+.|||.|.-...|+..+ -+|+|+|+|+..++.+.+... .....+..+.++++|...++...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 45799999999999999999854 689999999999999754210 00012346889999999987422
Q ss_pred --CccceEEEe
Q 030823 160 --RYACRFFVL 168 (171)
Q Consensus 160 --~sfDlV~s~ 168 (171)
+.||+|+-.
T Consensus 121 ~~~~fD~VyDr 131 (226)
T PRK13256 121 NLPVFDIWYDR 131 (226)
T ss_pred ccCCcCeeeee
Confidence 689998743
No 144
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.37 E-value=1.8e-06 Score=67.59 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC-Cc--------EEEEEeCCHHHHHHHHHhhhhhc
Q 030823 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IE--------KLIMMDTSYDMLKLCKDAQQDAH 139 (171)
Q Consensus 69 ~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~-~~--------~v~gvD~S~~mL~~a~~~~~~~~ 139 (171)
....+...+|..|+. +..+ ++...+||--||+|.+...-+.... .. +++|+|++++++..+++...
T Consensus 8 ~~a~L~~~lA~~ll~-la~~-~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~--- 82 (179)
T PF01170_consen 8 GPAPLRPTLAAALLN-LAGW-RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLK--- 82 (179)
T ss_dssp SSTSS-HHHHHHHHH-HTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHH---
T ss_pred CCCCCCHHHHHHHHH-HhCC-CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHH---
Confidence 356677777777764 3333 3557899999999999865532111 12 49999999999999987543
Q ss_pred cCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823 140 NDNI--ETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 140 ~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
..+. .+.+...|...+|+.++++|+|+++
T Consensus 83 ~ag~~~~i~~~~~D~~~l~~~~~~~d~Ivtn 113 (179)
T PF01170_consen 83 AAGVEDYIDFIQWDARELPLPDGSVDAIVTN 113 (179)
T ss_dssp HTT-CGGEEEEE--GGGGGGTTSBSCEEEEE
T ss_pred hcccCCceEEEecchhhcccccCCCCEEEEC
Confidence 2333 4678889999999889999999986
No 145
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.4e-06 Score=66.56 Aligned_cols=89 Identities=12% Similarity=0.023 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhcc--cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC
Q 030823 76 AVAENLLDRLEDCR--KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (171)
Q Consensus 76 ~va~~l~~rL~~i~--~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e 153 (171)
.+|.-|..-+...- -...+++|+|||.|.+.....- +....|+|+|+.++.|+.+.+.. ..-.+++.++++|.-
T Consensus 31 ~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNa---eEfEvqidlLqcdil 106 (185)
T KOG3420|consen 31 HIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNA---EEFEVQIDLLQCDIL 106 (185)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhch---HHhhhhhheeeeecc
Confidence 44444544444321 2457899999999999866553 34579999999999999987532 123456778999998
Q ss_pred CCCCCCCccceEEEe
Q 030823 154 FLPLKERYACRFFVL 168 (171)
Q Consensus 154 ~LPf~~~sfDlV~s~ 168 (171)
.+-+..+.||.++.|
T Consensus 107 dle~~~g~fDtaviN 121 (185)
T KOG3420|consen 107 DLELKGGIFDTAVIN 121 (185)
T ss_pred chhccCCeEeeEEec
Confidence 888888999998875
No 146
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.36 E-value=2.7e-06 Score=70.48 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc--cCCCceeEEEccCCC-CCCCCCccceEEE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKERYACRFFV 167 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~--~~~~~~~~~~~D~e~-LPf~~~sfDlV~s 167 (171)
...+||+||||+|.++..+.+..+..+++++|++++|++.+++...... ....++.++.+|... +.-.++.||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999999888775556799999999999999987431100 112345667777543 3333579999998
Q ss_pred ec
Q 030823 168 LA 169 (171)
Q Consensus 168 ~~ 169 (171)
..
T Consensus 152 D~ 153 (270)
T TIGR00417 152 DS 153 (270)
T ss_pred eC
Confidence 54
No 147
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.35 E-value=1.8e-06 Score=75.52 Aligned_cols=74 Identities=14% Similarity=0.039 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---ceeEEEccCCCCC--C--CCCccc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETCFVVGDEEFLP--L--KERYAC 163 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~---~~~~~~~D~e~LP--f--~~~sfD 163 (171)
+..+|||+|||||.++...... +..+|+++|+|+.+++.+++... ..++ ++.++.+|..... + ..++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~---~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVE---LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHH---HcCCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 3578999999999998765542 34699999999999999987432 2232 4778899976542 2 356899
Q ss_pred eEEEe
Q 030823 164 RFFVL 168 (171)
Q Consensus 164 lV~s~ 168 (171)
+|+++
T Consensus 296 lVilD 300 (396)
T PRK15128 296 VIVMD 300 (396)
T ss_pred EEEEC
Confidence 99986
No 148
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.35 E-value=2.2e-06 Score=68.09 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=59.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CC--CCCCccceEEE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP--LKERYACRFFV 167 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LP--f~~~sfDlV~s 167 (171)
..+.+||||||.|.+...++...+...++|+|++...+..+.++... ..-.++.++.+|+.. ++ ++++++|-|+.
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~--~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK--RGLKNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH--HTTSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh--hcccceEEEEccHHHHHhhcccCCchheEEE
Confidence 34589999999999999999888889999999999999988765431 122378889999887 33 56799999987
Q ss_pred ec
Q 030823 168 LA 169 (171)
Q Consensus 168 ~~ 169 (171)
+.
T Consensus 95 ~F 96 (195)
T PF02390_consen 95 NF 96 (195)
T ss_dssp ES
T ss_pred eC
Confidence 64
No 149
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.33 E-value=1.8e-06 Score=74.59 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcc-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823 77 VAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF 154 (171)
Q Consensus 77 va~~l~~rL~~i~-~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~ 154 (171)
+++.|.+.+.... ....++||++||+|.++..|++. ..+|+++|.++.|++.+++... ..++ ++.++.+|.+.
T Consensus 191 ~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~---~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 191 VNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIA---ANGIDNVQIIRMSAEE 265 (362)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHH---HhCCCcEEEEECCHHH
Confidence 4455555444322 12257999999999999999874 4699999999999999986432 2333 67889998765
No 150
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.32 E-value=1.8e-06 Score=74.38 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhccc-CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823 77 VAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF 154 (171)
Q Consensus 77 va~~l~~rL~~i~~-~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~ 154 (171)
.++.|.+.+..... ...++||+|||+|.++..|++. ..+|+++|++++|++.+++... ..++ ++.++.+|.+.
T Consensus 182 ~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~---~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 182 VNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIA---ANNIDNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHH---HcCCCcEEEEEcCHHH
Confidence 34444444333222 2247999999999999999874 3699999999999999987432 2333 57788888765
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.30 E-value=2.8e-06 Score=79.17 Aligned_cols=73 Identities=11% Similarity=-0.048 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---ceeEEEccCCCC-CCCCCccceEEE
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETCFVVGDEEFL-PLKERYACRFFV 167 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~---~~~~~~~D~e~L-Pf~~~sfDlV~s 167 (171)
..+|||+|||||.++..++.. +..+|+++|+|+.+++.+++... ..+. ++.++++|.... .-..++||+|++
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~---~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFA---LNGLSGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHH---HhCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 578999999999999999874 34589999999999999987542 1222 478899996532 212578999998
Q ss_pred e
Q 030823 168 L 168 (171)
Q Consensus 168 ~ 168 (171)
+
T Consensus 615 D 615 (702)
T PRK11783 615 D 615 (702)
T ss_pred C
Confidence 5
No 152
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=5.7e-06 Score=68.56 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCC-ccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKER-YACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~-sfDlV~s~ 168 (171)
+.+.|||||+|.|.++..|.++. .+|+++++.+.|+...++.. ....++..+.+|+-..+|+.- .++.|++|
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~----~~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERF----APYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhc----ccccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 36899999999999999999854 78999999999999988743 134467778999998888654 67888876
No 153
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.27 E-value=5.2e-06 Score=71.08 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCCcH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc----C----CCceeEEEccCCCC------
Q 030823 91 TFPTALCLGGSLEA-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN----D----NIETCFVVGDEEFL------ 155 (171)
Q Consensus 91 ~~~~vLDlGcGtG~-l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~----~----~~~~~~~~~D~e~L------ 155 (171)
+..+|||||||-|. +...... ++..++|+|+|.+.|+.|+++...... . .....|+++|...-
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 67899999999654 5555443 679999999999999999887621110 1 12456788876533
Q ss_pred CCCCCccceEEEe
Q 030823 156 PLKERYACRFFVL 168 (171)
Q Consensus 156 Pf~~~sfDlV~s~ 168 (171)
+.+...||+|.+-
T Consensus 140 ~~~~~~FDvVScQ 152 (331)
T PF03291_consen 140 PPRSRKFDVVSCQ 152 (331)
T ss_dssp SSTTS-EEEEEEE
T ss_pred cccCCCcceeehH
Confidence 3333599999863
No 154
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.27 E-value=3.9e-06 Score=68.35 Aligned_cols=76 Identities=11% Similarity=-0.050 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC-C-----CCCCc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL-P-----LKERY 161 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L-P-----f~~~s 161 (171)
+..+|||+|||+|..+..++.. .+.++|+++|.++++++.|++... ..+. .+.++.+|+... + .++++
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~---~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK---KAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 4579999999999988777653 245799999999999999987543 2333 477888887543 2 12579
Q ss_pred cceEEEec
Q 030823 162 ACRFFVLA 169 (171)
Q Consensus 162 fDlV~s~~ 169 (171)
||+|+..+
T Consensus 145 fD~VfiDa 152 (234)
T PLN02781 145 FDFAFVDA 152 (234)
T ss_pred CCEEEECC
Confidence 99999764
No 155
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.21 E-value=4.5e-06 Score=70.45 Aligned_cols=74 Identities=20% Similarity=0.063 Sum_probs=57.2
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCC--ccce
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKER--YACR 164 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~~~--sfDl 164 (171)
.+...++|.+||.|..+..+++..+ .++|+|+|.+++|++.+++... ..-++.++.++...++ ++++ ++|.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~----~~~ri~~i~~~f~~l~~~l~~~~~~vDg 93 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK----PFGRFTLVHGNFSNLKEVLAEGLGKVDG 93 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc----cCCcEEEEeCCHHHHHHHHHcCCCccCE
Confidence 4557999999999999999988653 5799999999999999987542 1235778888877664 2222 7998
Q ss_pred EEE
Q 030823 165 FFV 167 (171)
Q Consensus 165 V~s 167 (171)
|+.
T Consensus 94 Il~ 96 (296)
T PRK00050 94 ILL 96 (296)
T ss_pred EEE
Confidence 875
No 156
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.20 E-value=1.5e-05 Score=65.73 Aligned_cols=94 Identities=21% Similarity=0.161 Sum_probs=69.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030823 67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC 146 (171)
Q Consensus 67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~ 146 (171)
++|+=-.-..+++.+++.+.. .+...|||+|+|+|.++..|.+.+ .+++++|.++.+.+..++.. ....++.
T Consensus 8 ~gQnFL~~~~~~~~Iv~~~~~--~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~----~~~~~~~ 79 (262)
T PF00398_consen 8 LGQNFLVDPNIADKIVDALDL--SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERF----ASNPNVE 79 (262)
T ss_dssp CTSSEEEHHHHHHHHHHHHTC--GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHC----TTCSSEE
T ss_pred CCcCeeCCHHHHHHHHHhcCC--CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHh----hhcccce
Confidence 455533346667777776542 256899999999999999999855 89999999999999988743 1345678
Q ss_pred EEEccCCCCCCCC---CccceEEEe
Q 030823 147 FVVGDEEFLPLKE---RYACRFFVL 168 (171)
Q Consensus 147 ~~~~D~e~LPf~~---~sfDlV~s~ 168 (171)
.+.+|...+...+ +...+|++|
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~N 104 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGN 104 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEE
T ss_pred eeecchhccccHHhhcCCceEEEEE
Confidence 8999998888765 455566654
No 157
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.17 E-value=1.2e-05 Score=67.10 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC
Q 030823 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL 155 (171)
Q Consensus 76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L 155 (171)
.++..+++.- -.++.+.||++|.|||+++..|.+. .++|+++++.+.|+....++-.+ .........+++|.-..
T Consensus 45 ~v~~~I~~ka--~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~g-tp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKA--DLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQG-TPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhcc--CCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcC-CCccceeeEEecccccC
Confidence 4445554432 2367799999999999999999984 48999999999999998764321 00012355677887766
Q ss_pred CCCCCccceEEEe
Q 030823 156 PLKERYACRFFVL 168 (171)
Q Consensus 156 Pf~~~sfDlV~s~ 168 (171)
++ -.||.+++|
T Consensus 120 d~--P~fd~cVsN 130 (315)
T KOG0820|consen 120 DL--PRFDGCVSN 130 (315)
T ss_pred CC--cccceeecc
Confidence 65 489998885
No 158
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.12 E-value=8.1e-06 Score=69.82 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
...|||+|||||.++..-++.+ ..+|+++|-|.-+ +.|.+.... +....-++.+.+..|.+-+|.+.+|+|+|=+
T Consensus 61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~-N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKD-NGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHh-cCccceEEEeecceEEEecCccceeEEeehh
Confidence 4789999999999998888765 5799999998644 777664421 1122236778888887777689999999854
No 159
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.11 E-value=1.5e-05 Score=64.39 Aligned_cols=77 Identities=14% Similarity=0.014 Sum_probs=54.7
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh-hcc---------CCCceeEEEccCCCCCCCC
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD-AHN---------DNIETCFVVGDEEFLPLKE 159 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~-~~~---------~~~~~~~~~~D~e~LPf~~ 159 (171)
.+..+||+.|||.|.-...|+.++ -+|+|+|+|+..++.+.+.... ... ...++.++++|.-.++-..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 344699999999999999999854 6999999999999998442210 000 1124678899998887544
Q ss_pred -CccceEEEe
Q 030823 160 -RYACRFFVL 168 (171)
Q Consensus 160 -~sfDlV~s~ 168 (171)
+.||+|+=.
T Consensus 114 ~g~fD~iyDr 123 (218)
T PF05724_consen 114 VGKFDLIYDR 123 (218)
T ss_dssp HHSEEEEEEC
T ss_pred cCCceEEEEe
Confidence 579999743
No 160
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.03 E-value=3.2e-05 Score=68.70 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=64.0
Q ss_pred ccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhccc--CCCeEEEEcCCCcHHHHHHhhc----CCCcEEEE
Q 030823 47 RVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRK--TFPTALCLGGSLEAVRRLLRGR----GGIEKLIM 120 (171)
Q Consensus 47 ~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~--~~~~vLDlGcGtG~l~~~L~~~----~~~~~v~g 120 (171)
.+++|.+...+++... +.+.+.+.|+...-.. ....|||+|||+|-+.....+. +...+|++
T Consensus 152 tYe~fE~D~vKY~~Ye------------~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyA 219 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYE------------RAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYA 219 (448)
T ss_dssp HHHHHCC-HHHHHHHH------------HHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEE
T ss_pred cHhhHhcCHHHHHHHH------------HHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEE
Confidence 3456666555554332 2344455555432211 2467999999999998655442 23469999
Q ss_pred EeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 121 MDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 121 vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
++-++......++.... ..-+-.++.+.+|++.+..+ +.+|+|||=
T Consensus 220 VEkn~~A~~~l~~~v~~-n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 220 VEKNPNAVVTLQKRVNA-NGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp EESSTHHHHHHHHHHHH-TTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred EcCCHhHHHHHHHHHHh-cCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 99998777665443110 11223588899999999874 599999984
No 161
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.03 E-value=7.4e-05 Score=59.89 Aligned_cols=91 Identities=16% Similarity=0.120 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEc
Q 030823 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVG 150 (171)
Q Consensus 74 ~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~ 150 (171)
-...+. ++..|.... +..+||+|||++|.-+..+++.. +.++|+.+|+++++.+.|++... ..+. .+.++.+
T Consensus 30 ~~~~g~-lL~~l~~~~-~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~---~ag~~~~I~~~~g 104 (205)
T PF01596_consen 30 SPETGQ-LLQMLVRLT-RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFR---KAGLDDRIEVIEG 104 (205)
T ss_dssp HHHHHH-HHHHHHHHH-T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHH---HTTGGGGEEEEES
T ss_pred CHHHHH-HHHHHHHhc-CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHH---hcCCCCcEEEEEe
Confidence 334443 334444333 44799999999999999998643 35899999999999999987543 2333 5788888
Q ss_pred cCCC-CC-C----CCCccceEEEec
Q 030823 151 DEEF-LP-L----KERYACRFFVLA 169 (171)
Q Consensus 151 D~e~-LP-f----~~~sfDlV~s~~ 169 (171)
|+.. +| + +.+.||+|+.-+
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEES
T ss_pred ccHhhHHHHHhccCCCceeEEEEcc
Confidence 8643 33 1 246899999754
No 162
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.01 E-value=1.9e-05 Score=64.93 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=39.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~ 135 (171)
+..+|||||..|.++..+++.+....|+|+|+.+..++.|++.+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~ 102 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEI 102 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhc
Confidence 46799999999999999998777789999999999999998765
No 163
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.01 E-value=3.2e-05 Score=66.64 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHh-cccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCC
Q 030823 76 AVAENLLDRLED-CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEE 153 (171)
Q Consensus 76 ~va~~l~~rL~~-i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e 153 (171)
.+++.|.+...+ +......+||+-||.|.++..|+. ...+|+|+|.++++++.|++... ..++ ++.|+.++.+
T Consensus 180 ~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~--~~~~V~gvE~~~~av~~A~~Na~---~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAK--KAKKVIGVEIVEEAVEDARENAK---LNGIDNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHC--CSSEEEEEES-HHHHHHHHHHHH---HTT--SEEEEE--SH
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHh--hCCeEEEeeCCHHHHHHHHHHHH---HcCCCcceEEEeecc
Confidence 344444443333 223334899999999999999998 45899999999999999986432 2344 6888887765
Q ss_pred CC
Q 030823 154 FL 155 (171)
Q Consensus 154 ~L 155 (171)
.+
T Consensus 255 ~~ 256 (352)
T PF05958_consen 255 DF 256 (352)
T ss_dssp HC
T ss_pred ch
Confidence 43
No 164
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.98 E-value=1.6e-05 Score=64.68 Aligned_cols=74 Identities=7% Similarity=0.083 Sum_probs=61.1
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC---CCCCccceEEEe
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP---LKERYACRFFVL 168 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP---f~~~sfDlV~s~ 168 (171)
+.+||||||.|.+...+++..|...++|||+....+..+-++.. ..++ ++..+++|+..+- ++++++|-|+.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~---~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIK---ELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHH---HcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 68999999999999999988888899999999988888766543 4667 8888999987552 355699999877
Q ss_pred c
Q 030823 169 A 169 (171)
Q Consensus 169 ~ 169 (171)
.
T Consensus 127 F 127 (227)
T COG0220 127 F 127 (227)
T ss_pred C
Confidence 4
No 165
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.95 E-value=8e-05 Score=58.77 Aligned_cols=72 Identities=11% Similarity=0.012 Sum_probs=51.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CC-C-CCC-ccceE
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LP-L-KER-YACRF 165 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LP-f-~~~-sfDlV 165 (171)
..++||++||+|.++..+..++ ..+|+++|.++.+++.+++... ..+. ++.++.+|... +. + ..+ .||+|
T Consensus 50 g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~---~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv 125 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLA---LLKSGEQAEVVRNSALRALKFLAKKPTFDNVI 125 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHH---HhCCcccEEEEehhHHHHHHHhhccCCCceEE
Confidence 4789999999999999998765 3589999999999998876432 1222 36678888733 32 2 223 47777
Q ss_pred EE
Q 030823 166 FV 167 (171)
Q Consensus 166 ~s 167 (171)
+.
T Consensus 126 ~~ 127 (189)
T TIGR00095 126 YL 127 (189)
T ss_pred EE
Confidence 64
No 166
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.93 E-value=4.7e-05 Score=61.55 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=54.6
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
.+..+|+|||+|+|.++..+.+.+|.-+++.+|+ |++++.+++ ...+.++.+|.. -|+|. +|+|+...
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f-~~~P~--~D~~~l~~ 166 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFF-DPLPV--ADVYLLRH 166 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TT-TCCSS--ESEEEEES
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHH-hhhcc--ccceeeeh
Confidence 3557899999999999999998888889999999 889988875 235888999987 66655 99998765
Q ss_pred c
Q 030823 170 L 170 (171)
Q Consensus 170 ~ 170 (171)
+
T Consensus 167 v 167 (241)
T PF00891_consen 167 V 167 (241)
T ss_dssp S
T ss_pred h
Confidence 3
No 167
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=6.6e-05 Score=66.45 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCC---CCccceEE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLK---ERYACRFF 166 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~---~~sfDlV~ 166 (171)
+.+++||+=||.|.++..|++ ...+|+|+|+++++++.|++... ..++ ++.|+.+++|.+... ...+|+|+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~---~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vv 367 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAA---ANGIDNVEFIAGDAEEFTPAWWEGYKPDVVV 367 (432)
T ss_pred CCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHH---HcCCCcEEEEeCCHHHHhhhccccCCCCEEE
Confidence 557899999999999999997 56899999999999999987442 3444 689999999877644 35889987
Q ss_pred E
Q 030823 167 V 167 (171)
Q Consensus 167 s 167 (171)
.
T Consensus 368 v 368 (432)
T COG2265 368 V 368 (432)
T ss_pred E
Confidence 5
No 168
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.93 E-value=2.4e-05 Score=64.80 Aligned_cols=66 Identities=15% Similarity=-0.024 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
...++||||+|.|.++..+++. ..+|++.|.|+.|..+.++ ++. .+.+...+.-.+..||+|.|.-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~--f~~v~aTE~S~~Mr~rL~~-------kg~----~vl~~~~w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL--FKEVYATEASPPMRWRLSK-------KGF----TVLDIDDWQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh--cceEEeecCCHHHHHHHHh-------CCC----eEEehhhhhccCCceEEEeehh
Confidence 4578999999999999999984 4799999999999999875 332 3344444544567899998864
No 169
>PLN02823 spermine synthase
Probab=97.91 E-value=6.2e-05 Score=64.62 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCC-CCCCCCccceEEE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEF-LPLKERYACRFFV 167 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~-LPf~~~sfDlV~s 167 (171)
...+||.||+|.|.+++.+.+..+..+|+++|+++++++.+++..... ...+.++..+++|+.. +.-.+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 457899999999999998877556789999999999999998753100 0123457778888754 3445689999997
Q ss_pred e
Q 030823 168 L 168 (171)
Q Consensus 168 ~ 168 (171)
-
T Consensus 183 D 183 (336)
T PLN02823 183 D 183 (336)
T ss_pred c
Confidence 4
No 170
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.90 E-value=1.4e-05 Score=64.28 Aligned_cols=57 Identities=12% Similarity=0.020 Sum_probs=34.1
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
...|.|+|||.+.++..+.+ .-+|.-.|+-. .+ -..+.+|+.++|++++++|++|.+
T Consensus 73 ~~viaD~GCGdA~la~~~~~---~~~V~SfDLva---------------~n--~~Vtacdia~vPL~~~svDv~Vfc 129 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA---------------PN--PRVTACDIANVPLEDESVDVAVFC 129 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S------EEEEESS----------------SS--TTEEES-TTS-S--TT-EEEEEEE
T ss_pred CEEEEECCCchHHHHHhccc---CceEEEeeccC---------------CC--CCEEEecCccCcCCCCceeEEEEE
Confidence 46899999999999988754 24799999953 11 123779999999999999998764
No 171
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.88 E-value=0.0001 Score=57.26 Aligned_cols=79 Identities=13% Similarity=-0.034 Sum_probs=45.5
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc--CCCceeEEEccCCC-C--C-CCCCccc
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEEF-L--P-LKERYAC 163 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~--~~~~~~~~~~D~e~-L--P-f~~~sfD 163 (171)
.+..+|||||||+|..+..++......+|+..|..+ .++..+..... +. ...++.....|-.. . + +.++.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~-N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL-NGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT-T--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh-ccccccccccCcEEEecCcccccccccccCC
Confidence 456899999999999998888754567999999998 77776543321 01 12244445544322 1 1 3457899
Q ss_pred eEEEecc
Q 030823 164 RFFVLAL 170 (171)
Q Consensus 164 lV~s~~~ 170 (171)
+|+.+-+
T Consensus 122 ~IlasDv 128 (173)
T PF10294_consen 122 VILASDV 128 (173)
T ss_dssp EEEEES-
T ss_pred EEEEecc
Confidence 9998754
No 172
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.87 E-value=5.7e-05 Score=58.98 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=57.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCccce
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERYACR 164 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~sfDl 164 (171)
...-|||+|.|||-+++.+..++ +...++.++.|++......+.. ++.+ ++.||++.+. +++..||.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~--ii~gda~~l~~~l~e~~gq~~D~ 120 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVN--IINGDAFDLRTTLGEHKGQFFDS 120 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCcc--ccccchhhHHHHHhhcCCCeeee
Confidence 34579999999999999998765 5679999999999999987743 4433 5788888774 67889999
Q ss_pred EEEe
Q 030823 165 FFVL 168 (171)
Q Consensus 165 V~s~ 168 (171)
|+|.
T Consensus 121 viS~ 124 (194)
T COG3963 121 VISG 124 (194)
T ss_pred EEec
Confidence 9985
No 173
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.85 E-value=6.5e-05 Score=70.12 Aligned_cols=96 Identities=9% Similarity=-0.088 Sum_probs=70.1
Q ss_pred CChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc------------C-----------------------
Q 030823 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR------------G----------------------- 113 (171)
Q Consensus 69 ~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~------------~----------------------- 113 (171)
...++.+.+|..|+. +..+..+...++|.+||+|.+....+.. +
T Consensus 169 ~~Apl~etlAaa~l~-~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~ 247 (702)
T PRK11783 169 GEAPLKENLAAAILL-RSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQER 247 (702)
T ss_pred CCCCCcHHHHHHHHH-HcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 467889889888874 3444345578999999999987554320 0
Q ss_pred -------CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCC--CCccceEEEe
Q 030823 114 -------GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLK--ERYACRFFVL 168 (171)
Q Consensus 114 -------~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~--~~sfDlV~s~ 168 (171)
...+++|+|++++|+..|++... ..++ .+.+..+|...++.+ .++||+|++|
T Consensus 248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~---~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 248 ARAGLAELPSKFYGSDIDPRVIQAARKNAR---RAGVAELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred HhhcccccCceEEEEECCHHHHHHHHHHHH---HcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence 11369999999999999987543 2344 367888999888654 3589999997
No 174
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.85 E-value=6.7e-05 Score=65.40 Aligned_cols=74 Identities=16% Similarity=0.030 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
..+|||++||+|.++..++...+..+|+++|++++.++.+++... ..++ +..+..+|.+.+....+.||+|+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~---~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLE---LNGLENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH---HhCCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 358999999999999998764445699999999999999876432 1223 3456778876543224679999874
No 175
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.84 E-value=6.2e-05 Score=62.72 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhh
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQ 135 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~ 135 (171)
.+.+|||+|||+|...-...+.. ...+++++|.|+.|++.++...
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 34689999999997766555432 3579999999999999988754
No 176
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.83 E-value=3.6e-05 Score=65.59 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=56.9
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC----CceeEEEccCC------CCCCC
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN----IETCFVVGDEE------FLPLK 158 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~----~~~~~~~~D~e------~LPf~ 158 (171)
.++...++|+|||-|-=+..+... .++.++|+|+++..++.|+.+...++... ..+.|+++|.. .++++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 456688999999988655555442 68899999999999999987765432222 14678888753 44667
Q ss_pred CCccceEEE
Q 030823 159 ERYACRFFV 167 (171)
Q Consensus 159 ~~sfDlV~s 167 (171)
+.+||+|.|
T Consensus 194 dp~fDivSc 202 (389)
T KOG1975|consen 194 DPRFDIVSC 202 (389)
T ss_pred CCCcceeee
Confidence 777999875
No 177
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.82 E-value=0.00018 Score=53.89 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=50.2
Q ss_pred cCCCeEEEEcCCCcHHHHHHhh-----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccc
Q 030823 90 KTFPTALCLGGSLEAVRRLLRG-----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYAC 163 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~-----~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfD 163 (171)
.+...|+|+|||-|+++..|.. . +.-+|+++|.++.+++.+.+......... ....++.++....+. ++..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 4568999999999999999987 4 55799999999999998876543211111 234444454433322 45555
Q ss_pred eEEE
Q 030823 164 RFFV 167 (171)
Q Consensus 164 lV~s 167 (171)
+++.
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 5554
No 178
>PLN02476 O-methyltransferase
Probab=97.81 E-value=0.00013 Score=61.03 Aligned_cols=76 Identities=12% Similarity=-0.048 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCC-CCC-C----CCCc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEE-FLP-L----KERY 161 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e-~LP-f----~~~s 161 (171)
+..+|||||+++|..+..++..- +.++|+.+|.++++++.|++..+ ..+. .+.++.+|+. .|| + .+++
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~---~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE---LAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 45799999999999999987632 35689999999999999987553 2343 5778888863 343 2 2468
Q ss_pred cceEEEec
Q 030823 162 ACRFFVLA 169 (171)
Q Consensus 162 fDlV~s~~ 169 (171)
||+|+.-+
T Consensus 195 FD~VFIDa 202 (278)
T PLN02476 195 YDFAFVDA 202 (278)
T ss_pred CCEEEECC
Confidence 99998643
No 179
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.80 E-value=0.00012 Score=59.26 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEE-ccC-CCCC-CCCCccce
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVV-GDE-EFLP-LKERYACR 164 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~-~D~-e~LP-f~~~sfDl 164 (171)
+..+||+||.+.|.-+..++..-+ .++++.+|.++++.+.|++... ..++ .+..+. +|. +.+. +..++||+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~---~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA---EAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH---HcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 568999999999999999986544 6799999999999999987553 3443 255566 353 2233 56799999
Q ss_pred EEEe
Q 030823 165 FFVL 168 (171)
Q Consensus 165 V~s~ 168 (171)
|+.=
T Consensus 136 iFID 139 (219)
T COG4122 136 VFID 139 (219)
T ss_pred EEEe
Confidence 9864
No 180
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.77 E-value=0.00025 Score=49.15 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=47.2
Q ss_pred EEEEcCCCcHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHhhhhhccCCCc-eeEEEccCCC--CCCCC-CccceEEE
Q 030823 95 ALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEF--LPLKE-RYACRFFV 167 (171)
Q Consensus 95 vLDlGcGtG~l~~~L~~~~~~-~~v~gvD~S~~mL~~a~~~~~~~~~~~~~-~~~~~~D~e~--LPf~~-~sfDlV~s 167 (171)
++|+|||+|... .+...... ..++++|+++.|+..+..... ..... +.+..++... +|+.+ ..||++.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE---GAGLGLVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh---hcCCCceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999965 33332221 489999999999999554221 11111 4677788775 89887 59999943
No 181
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.74 E-value=7e-05 Score=67.47 Aligned_cols=78 Identities=9% Similarity=-0.014 Sum_probs=60.7
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC--CCCCccceEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP--LKERYACRFF 166 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP--f~~~sfDlV~ 166 (171)
...+.+||||||.|.++..++...+...++|+|++...+..+-.+.. ..+. ++.+++.|++.+. |+++++|-|+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~---~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAG---EQNITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH---HcCCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 45688999999999999999988888899999999988877755432 2333 5666777776443 7889999999
Q ss_pred Eecc
Q 030823 167 VLAL 170 (171)
Q Consensus 167 s~~~ 170 (171)
.+.=
T Consensus 423 i~FP 426 (506)
T PRK01544 423 ILFP 426 (506)
T ss_pred EECC
Confidence 8753
No 182
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.73 E-value=4.6e-05 Score=62.52 Aligned_cols=76 Identities=16% Similarity=0.018 Sum_probs=51.5
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCC--cEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC--CCCCCCCccceEEEe
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGI--EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--FLPLKERYACRFFVL 168 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~--~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e--~LPf~~~sfDlV~s~ 168 (171)
.+||++|||.|+..-.|.+..+. -.|+++|.|+..++..++...- ..........-.+.+ .-|.+++++|+|++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-DESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-chhhhcccceeccchhccCCCCcCccceEEEE
Confidence 47999999999998888765444 5899999999999998763210 011111212222223 346789999999876
Q ss_pred c
Q 030823 169 A 169 (171)
Q Consensus 169 ~ 169 (171)
.
T Consensus 152 F 152 (264)
T KOG2361|consen 152 F 152 (264)
T ss_pred E
Confidence 4
No 183
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.64 E-value=0.00025 Score=56.69 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=50.9
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF 166 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~ 166 (171)
..+.+.|+|+-||-|.++..++...+...|+++|+.|..++..++... ..++ .+..+.+|...++. .+.||-|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~---lNkv~~~i~~~~~D~~~~~~-~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIR---LNKVENRIEVINGDAREFLP-EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHH---HTT-TTTEEEEES-GGG----TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHH---HcCCCCeEEEEcCCHHHhcC-ccccCEEE
Confidence 356789999999999999999875566899999999988888765332 1222 36678899887775 89999999
Q ss_pred Eec
Q 030823 167 VLA 169 (171)
Q Consensus 167 s~~ 169 (171)
++-
T Consensus 175 m~l 177 (200)
T PF02475_consen 175 MNL 177 (200)
T ss_dssp E--
T ss_pred ECC
Confidence 864
No 184
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.63 E-value=8e-05 Score=57.76 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=48.0
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC--CCCCc-cceEEEe
Q 030823 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP--LKERY-ACRFFVL 168 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LP--f~~~s-fDlV~s~ 168 (171)
.|+|+.||.|-.+..+++. ..+|+++|+++..+..++... ..-++ ++.|+++|...+. +..+. +|+|+.+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa---~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNA---EVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHH---HHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHH---HHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6899999999999999985 479999999999999997532 23554 6889999976542 22223 8999875
No 185
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.62 E-value=5.4e-05 Score=67.62 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=45.6
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIE-KLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~-~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
..+||+|||+|.++..|.+++-.. .+..-|..+..++-|-+ .|+...+-+.....|||++++||+|-|+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale-------RGvpa~~~~~~s~rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE-------RGVPAMIGVLGSQRLPFPSNAFDMVHCS 188 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh-------cCcchhhhhhccccccCCccchhhhhcc
Confidence 578999999999999998743111 11122444455555533 5554433344457999999999999775
No 186
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.62 E-value=0.00016 Score=60.08 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=43.5
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
.....|.|+|||.+.++. . ...+|..+|+-. ++-..+.+|+..+|++|+|+|++|.+
T Consensus 179 ~~~~vIaD~GCGEakiA~--~---~~~kV~SfDL~a-----------------~~~~V~~cDm~~vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS--S---ERHKVHSFDLVA-----------------VNERVIACDMRNVPLEDESVDVAVFC 235 (325)
T ss_pred cCceEEEecccchhhhhh--c---cccceeeeeeec-----------------CCCceeeccccCCcCccCcccEEEee
Confidence 345678999999998886 2 225899999842 12233789999999999999998765
No 187
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.60 E-value=0.00029 Score=59.05 Aligned_cols=92 Identities=9% Similarity=-0.113 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-------CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-
Q 030823 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-------GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI- 143 (171)
Q Consensus 72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-------~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~- 143 (171)
|.-..+++.|+..+. ..+..+|+|.+||+|.+...+.+. .....++|+|+++.++..++-... ..+.
T Consensus 29 ~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~---l~~~~ 103 (311)
T PF02384_consen 29 YTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL---LHGID 103 (311)
T ss_dssp ---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH---HTTHH
T ss_pred ehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh---hhccc
Confidence 344566666665552 234568999999999997766541 245799999999999988764221 1222
Q ss_pred --ceeEEEccCCCCCCC--CCccceEEEe
Q 030823 144 --ETCFVVGDEEFLPLK--ERYACRFFVL 168 (171)
Q Consensus 144 --~~~~~~~D~e~LPf~--~~sfDlV~s~ 168 (171)
......+|.-..+.. ...||+|++|
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~N 132 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGN 132 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE
T ss_pred cccccccccccccccccccccccccccCC
Confidence 123566665444432 5899999987
No 188
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.59 E-value=0.00015 Score=53.60 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=36.8
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~ 135 (171)
++||+|||.|.++..+...++..+|+++|+++++...+++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~ 42 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENV 42 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHH
Confidence 489999999999999988766669999999999999887653
No 189
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.59 E-value=0.00031 Score=60.49 Aligned_cols=68 Identities=15% Similarity=-0.012 Sum_probs=49.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
.+..++|||||++|.++..|.+++ .+|++||..+ |-.... ....+....+|......+.+.+|+|+|=
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~-l~~~L~--------~~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGP-MAQSLM--------DTGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechh-cCHhhh--------CCCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 567899999999999999999865 5999999664 332221 3345666777765443236889999874
No 190
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.57 E-value=0.001 Score=52.52 Aligned_cols=88 Identities=13% Similarity=0.017 Sum_probs=58.1
Q ss_pred HHHHHHHHhc---ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823 79 ENLLDRLEDC---RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF 154 (171)
Q Consensus 79 ~~l~~rL~~i---~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~ 154 (171)
..+.|-|..+ .....+++|||+|.|.-+..|+=..|..+++.+|....-+.-.+.... .-+. ++..+.+.+|.
T Consensus 33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~---~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVR---ELGLSNVEVINGRAEE 109 (184)
T ss_dssp HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHH---HHT-SSEEEEES-HHH
T ss_pred HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHH---HhCCCCEEEEEeeecc
Confidence 3444544432 223338999999999888877654577899999999866554443221 1222 47778888888
Q ss_pred CCCCCCccceEEEecc
Q 030823 155 LPLKERYACRFFVLAL 170 (171)
Q Consensus 155 LPf~~~sfDlV~s~~~ 170 (171)
+...++||+|++=|+
T Consensus 110 -~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 110 -PEYRESFDVVTARAV 124 (184)
T ss_dssp -TTTTT-EEEEEEESS
T ss_pred -cccCCCccEEEeehh
Confidence 667899999999776
No 191
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.56 E-value=0.00035 Score=56.54 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
...++||.|+|-|.++..|.-. ...+|-.+|+.+..++.|++.... ....-..+.+...+.+-.+++.||+|++-.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~-~f~~VDlVEp~~~Fl~~a~~~l~~--~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP-VFDEVDLVEPVEKFLEQAKEYLGK--DNPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC-C-SEEEEEES-HHHHHHHHHHTCC--GGCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHH-hcCEeEEeccCHHHHHHHHHHhcc--cCCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 4689999999999999988532 358999999999999999864310 011123445555555544578999999854
No 192
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.53 E-value=0.00032 Score=57.82 Aligned_cols=76 Identities=16% Similarity=0.027 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCC-CCC-C-----CCC
Q 030823 91 TFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEE-FLP-L-----KER 160 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e-~LP-f-----~~~ 160 (171)
+..+||+||+++|.-+..++.. .+.++|+.+|.++++.+.|++... ..+. .+.++.+++. .|| + .++
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~---~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQ---KAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH---HCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 4579999999999999888763 246799999999999999987653 2332 5778888864 333 1 136
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
+||+|+.-+
T Consensus 156 ~fD~iFiDa 164 (247)
T PLN02589 156 TFDFIFVDA 164 (247)
T ss_pred cccEEEecC
Confidence 999998643
No 193
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00045 Score=55.77 Aligned_cols=84 Identities=13% Similarity=0.012 Sum_probs=61.7
Q ss_pred HhcccCCCeEEEEcCCCcHHHHHHhhc--CCCcEEEEEeCCHHHHHHHHHhhhh-hc-------cCCCceeEEEccCCCC
Q 030823 86 EDCRKTFPTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQQD-AH-------NDNIETCFVVGDEEFL 155 (171)
Q Consensus 86 ~~i~~~~~~vLDlGcGtG~l~~~L~~~--~~~~~v~gvD~S~~mL~~a~~~~~~-~~-------~~~~~~~~~~~D~e~L 155 (171)
.+..++..++||+|.|||.++..+..- .+...++|+|.-++.++.+++.... .+ -...++.++++|.-..
T Consensus 77 ~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 77 DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG 156 (237)
T ss_pred HHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence 333467889999999999999877631 1334559999999999998765421 11 0123577899999888
Q ss_pred CCCCCccceEEEec
Q 030823 156 PLKERYACRFFVLA 169 (171)
Q Consensus 156 Pf~~~sfDlV~s~~ 169 (171)
--+...||.|.+.|
T Consensus 157 ~~e~a~YDaIhvGA 170 (237)
T KOG1661|consen 157 YAEQAPYDAIHVGA 170 (237)
T ss_pred CCccCCcceEEEcc
Confidence 77889999998865
No 194
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.50 E-value=0.00031 Score=63.34 Aligned_cols=45 Identities=13% Similarity=-0.016 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCC--------CcEEEEEeCCHHHHHHHHHhh
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGG--------IEKLIMMDTSYDMLKLCKDAQ 135 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~--------~~~v~gvD~S~~mL~~a~~~~ 135 (171)
...+|||.|||+|.+...+..... ...++|+|+++..+..++...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 346899999999999887764221 257899999999999987643
No 195
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.50 E-value=0.00039 Score=59.88 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
...|||+|||+|.++..-++. ..++|++++.| +|.+.|+..... ++-.-.+..+-|-.|.+.+ ++..|+|+|-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~-N~~~~rItVI~GKiEdieL-PEk~DviISE 250 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVAS-NNLADRITVIPGKIEDIEL-PEKVDVIISE 250 (517)
T ss_pred CcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhc-CCccceEEEccCccccccC-chhccEEEec
Confidence 467999999999998777664 45799999986 688888875431 1111246667788998887 5889999973
No 196
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.49 E-value=0.0011 Score=56.71 Aligned_cols=78 Identities=12% Similarity=0.012 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC----CCC--CCC
Q 030823 91 TFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPL--KER 160 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~----LPf--~~~ 160 (171)
+...++|+|||+|.=+..|.+ ......++++|+|.++|+.+.+......-+.+.+.-+++|.+. +|- ..+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 445899999999977666543 2234589999999999999876542111234556667887643 321 234
Q ss_pred ccceEEEe
Q 030823 161 YACRFFVL 168 (171)
Q Consensus 161 sfDlV~s~ 168 (171)
...+|+..
T Consensus 156 ~~r~~~fl 163 (319)
T TIGR03439 156 RPTTILWL 163 (319)
T ss_pred CccEEEEe
Confidence 46676654
No 197
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00065 Score=56.09 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=59.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-c-eeEEEccCCCCCCCCCccceEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E-TCFVVGDEEFLPLKERYACRFF 166 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~-~~~~~~D~e~LPf~~~sfDlV~ 166 (171)
.+..+|||.|.|+|.++..|+. .++.++|+.+|.-+++++.|++..+. .+. + +.+..+|....-+++ .||.|+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~---~~l~d~v~~~~~Dv~~~~~~~-~vDav~ 168 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE---FGLGDRVTLKLGDVREGIDEE-DVDAVF 168 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH---hccccceEEEecccccccccc-ccCEEE
Confidence 5779999999999999999985 45678999999999999999875431 132 2 667778887777655 999998
Q ss_pred E
Q 030823 167 V 167 (171)
Q Consensus 167 s 167 (171)
.
T Consensus 169 L 169 (256)
T COG2519 169 L 169 (256)
T ss_pred E
Confidence 5
No 198
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.48 E-value=0.00079 Score=55.50 Aligned_cols=77 Identities=12% Similarity=0.012 Sum_probs=53.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC---CCccceE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK---ERYACRF 165 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~---~~sfDlV 165 (171)
++..+|||.|.|+|.++..|++ -++.++|+..|..++..+.|++..+. ....-++.+...|...-.|+ ++.+|.|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccEE
Confidence 5789999999999999999985 34678999999999999999876542 11122577888887544442 3689998
Q ss_pred EE
Q 030823 166 FV 167 (171)
Q Consensus 166 ~s 167 (171)
+.
T Consensus 118 fL 119 (247)
T PF08704_consen 118 FL 119 (247)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 199
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.43 E-value=0.00087 Score=53.79 Aligned_cols=74 Identities=9% Similarity=-0.066 Sum_probs=47.9
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC--CC------CCCccceE
Q 030823 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PL------KERYACRF 165 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L--Pf------~~~sfDlV 165 (171)
+|||||||||..+..+++..+.-...-.|+.+..+..-.+-......+++. ..+..|...- |. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~-~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR-PPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC-CCeEeecCCCCCccccccccCCCCccee
Confidence 599999999999999998887778889999988864433211100112221 1233443332 32 36799999
Q ss_pred EEe
Q 030823 166 FVL 168 (171)
Q Consensus 166 ~s~ 168 (171)
++.
T Consensus 107 ~~~ 109 (204)
T PF06080_consen 107 FCI 109 (204)
T ss_pred eeh
Confidence 985
No 200
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0006 Score=53.98 Aligned_cols=74 Identities=14% Similarity=0.066 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 91 TFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
...-+||||||+|-++..|... ++.....++|++++.++.-.+-.. ..++.+..++.|...- +.++++|+++-|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~---~n~~~~~~V~tdl~~~-l~~~~VDvLvfN 117 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR---CNRVHIDVVRTDLLSG-LRNESVDVLVFN 117 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH---hcCCccceeehhHHhh-hccCCccEEEEC
Confidence 3567899999999999988753 355678899999999988654321 2334455566664322 234899988765
No 201
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.00053 Score=59.65 Aligned_cols=98 Identities=8% Similarity=-0.110 Sum_probs=73.4
Q ss_pred hCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC-------------------------------
Q 030823 66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG------------------------------- 114 (171)
Q Consensus 66 ~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~------------------------------- 114 (171)
.+.-..+|+..+|..|+.+ ..... ...++|-=||+|.+....+-...
T Consensus 168 ~~~g~ApLketLAaAil~l-agw~~-~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~ 245 (381)
T COG0116 168 VYDGPAPLKETLAAAILLL-AGWKP-DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE 245 (381)
T ss_pred ccCCCCCchHHHHHHHHHH-cCCCC-CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence 3566789999999988754 33332 25799999999999876653221
Q ss_pred --------CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823 115 --------IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 115 --------~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
...++|+|+++.|++.|+... ...++ .+.|.++|...++-+-+.+|+|+||
T Consensus 246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA---~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 246 ERARRGKELPIIYGSDIDPRHIEGAKANA---RAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred HHHhhcCccceEEEecCCHHHHHHHHHHH---HhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 014789999999999998643 34665 4889999999887544899999998
No 202
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.35 E-value=0.0016 Score=54.73 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=59.2
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc--cCCCceeEEEccCCC-CCCCCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~--~~~~~~~~~~~D~e~-LPf~~~sfDlV~s~ 168 (171)
+.+||-||.|.|..++.+.+..+..+++++|+.+++++.+++..-... ..+..+..+..|.-. +.-.++.||+|++-
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 369999999999999999987788999999999999999987542100 013445667777643 34334489999986
Q ss_pred cc
Q 030823 169 AL 170 (171)
Q Consensus 169 ~~ 170 (171)
.-
T Consensus 157 ~t 158 (282)
T COG0421 157 ST 158 (282)
T ss_pred CC
Confidence 54
No 203
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.35 E-value=0.00085 Score=60.09 Aligned_cols=94 Identities=6% Similarity=-0.065 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEE
Q 030823 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFV 148 (171)
Q Consensus 71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~ 148 (171)
=++++..+......|..-..+..+|||++||+|.=+.+++... +.+.|+++|+++..+...++..+ ..++ ++...
T Consensus 93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~---r~G~~nv~v~ 169 (470)
T PRK11933 93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANIS---RCGVSNVALT 169 (470)
T ss_pred EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCeEEEE
Confidence 3556666665544442112567899999999999888887643 34699999999999998876543 2344 45556
Q ss_pred EccCCCCC-CCCCccceEEE
Q 030823 149 VGDEEFLP-LKERYACRFFV 167 (171)
Q Consensus 149 ~~D~e~LP-f~~~sfDlV~s 167 (171)
..|...++ ..++.||.|+.
T Consensus 170 ~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 170 HFDGRVFGAALPETFDAILL 189 (470)
T ss_pred eCchhhhhhhchhhcCeEEE
Confidence 67877653 33578999984
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.34 E-value=0.001 Score=54.55 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=56.2
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCCC-CCCCC-ccceE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFL-PLKER-YACRF 165 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~L-Pf~~~-sfDlV 165 (171)
....+||-||.|.|..++.+.+..+..+|+++|+++.+++.+++-.... ...+.++..+.+|+... --..+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3578999999999999999988666789999999999999998643110 11234566788887533 22233 89999
Q ss_pred EEecc
Q 030823 166 FVLAL 170 (171)
Q Consensus 166 ~s~~~ 170 (171)
+.-..
T Consensus 155 i~D~~ 159 (246)
T PF01564_consen 155 IVDLT 159 (246)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 97543
No 205
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.00069 Score=58.26 Aligned_cols=73 Identities=16% Similarity=-0.048 Sum_probs=56.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc-eeEEE-ccCCCCCCCCCccceEEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVV-GDEEFLPLKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~-~~~~~-~D~e~LPf~~~sfDlV~s 167 (171)
++...+||==||||.+.....-. ..+++|+|++..|+.-++...+ .-+++ ..+.. .|+..+||++++||.|++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~---~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLE---YYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhh---hhCcCceeEEEecccccCCCCCCccceEEe
Confidence 45679999999999998877653 3799999999999999976332 12222 22333 499999999999999985
No 206
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.28 E-value=0.0007 Score=53.26 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC---CCCCccceEE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP---LKERYACRFF 166 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LP---f~~~sfDlV~ 166 (171)
...++||+-||||.++.....++ ..+|+.+|.+++.+...++..+...... ....+..|.. .++ -....||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~-~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLED-KIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GG-GEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCc-ceeeeccCHHHHHHhhcccCCCceEEE
Confidence 45899999999999988766554 5799999999999998876443211111 3455666643 332 2478999998
Q ss_pred E
Q 030823 167 V 167 (171)
Q Consensus 167 s 167 (171)
.
T Consensus 120 l 120 (183)
T PF03602_consen 120 L 120 (183)
T ss_dssp E
T ss_pred E
Confidence 5
No 207
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.23 E-value=0.0013 Score=52.67 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=51.6
Q ss_pred EEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccC-CCCCCCCCc-cceEEEecc
Q 030823 95 ALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDE-EFLPLKERY-ACRFFVLAL 170 (171)
Q Consensus 95 vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~-e~LPf~~~s-fDlV~s~~~ 170 (171)
|+|+||--|.+...|.+.+...+++++|+++.-++.|++... ..+. .+....+|. +.++ ++. .|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~---~~~l~~~i~~rlgdGL~~l~--~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA---KYGLEDRIEVRLGDGLEVLK--PGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH---HTT-TTTEEEEE-SGGGG----GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCcccEEEEECCcccccC--CCCCCCEEEEecC
Confidence 689999999999999998888899999999999999987653 2332 477788885 4443 444 899998764
No 208
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.00065 Score=60.93 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF 154 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~ 154 (171)
....+||+.||||.++..+++ +.++|+|++++++.+.-|+... ...++ +.+|++|-+|.
T Consensus 383 ~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA---~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNA---QINGISNATFIVGQAED 442 (534)
T ss_pred CCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhhhcc---hhcCccceeeeecchhh
Confidence 446789999999999999998 6689999999999999987532 34565 78999994443
No 209
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.17 E-value=0.002 Score=51.26 Aligned_cols=97 Identities=16% Similarity=0.024 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCc----HHHHHHhh--cCC---CcEEEEEeCCHHHHHHHHHhhhhh--
Q 030823 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLE----AVRRLLRG--RGG---IEKLIMMDTSYDMLKLCKDAQQDA-- 138 (171)
Q Consensus 70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG----~l~~~L~~--~~~---~~~v~gvD~S~~mL~~a~~~~~~~-- 138 (171)
.+.+.+.+...++++.. ..+.-+|+..||+|| .++..|.+ ... .-+|+|.|+|+.+|+.|++-....
T Consensus 12 f~~l~~~vlp~~~~~~~--~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~ 89 (196)
T PF01739_consen 12 FEALRDEVLPPLLARAR--PGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERS 89 (196)
T ss_dssp HHHHHHHHH-------C--S-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGG
T ss_pred HHHHHHHHHHhhccccC--CCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHH
Confidence 45555555544333221 124578999999999 34444444 111 239999999999999997632110
Q ss_pred --------------ccCC----------CceeEEEccCCCCCCCCCccceEEEe
Q 030823 139 --------------HNDN----------IETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 139 --------------~~~~----------~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
...+ -.+.|...|.-..+...+.||+|+|-
T Consensus 90 ~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CR 143 (196)
T PF01739_consen 90 LRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCR 143 (196)
T ss_dssp GTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-
T ss_pred HhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEec
Confidence 0001 02567777876644567899999874
No 210
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.14 E-value=0.0032 Score=51.94 Aligned_cols=75 Identities=13% Similarity=-0.004 Sum_probs=51.0
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
....+|+|||||.--++..+....+...++|+|++..+++...... ...+++....+.|...-+ ++...|+.+..
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l---~~l~~~~~~~v~Dl~~~~-~~~~~DlaLll 178 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFL---AVLGVPHDARVRDLLSDP-PKEPADLALLL 178 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHH---HHTT-CEEEEEE-TTTSH-TTSEESEEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHH---HhhCCCcceeEeeeeccC-CCCCcchhhHH
Confidence 3468999999999988877765445579999999999999876532 234556666777766554 46788887653
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=97.11 E-value=0.0049 Score=51.25 Aligned_cols=75 Identities=12% Similarity=0.038 Sum_probs=51.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh--hccCCCceeEEEccCCCCCCCCCccceEEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD--AHNDNIETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~--~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
..+.+||-+|.|.|..++.+.+.. .+|++||+.+++++.+++..-. ....++++..+.. ...-..++||+|++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~---~~~~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ---LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh---hhhccCCcCCEEEE
Confidence 456899999999999999998843 4999999999999999873210 0112334443331 11112478999997
Q ss_pred ec
Q 030823 168 LA 169 (171)
Q Consensus 168 ~~ 169 (171)
-+
T Consensus 146 Ds 147 (262)
T PRK00536 146 LQ 147 (262)
T ss_pred cC
Confidence 54
No 212
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.09 E-value=0.002 Score=51.50 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=56.3
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEecc
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYACRFFVLAL 170 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfDlV~s~~~ 170 (171)
+.+.|+|+|+|-++..-++ ...+|++++..|.....|.+.. +.++ .++..+++|+....| +..|+|+|--|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~--~A~rViAiE~dPk~a~~a~eN~---~v~g~~n~evv~gDA~~y~f--e~ADvvicEml 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAH--AAERVIAIEKDPKRARLAEENL---HVPGDVNWEVVVGDARDYDF--ENADVVICEML 105 (252)
T ss_pred hceeeccCCcchHHHHHHh--hhceEEEEecCcHHHHHhhhcC---CCCCCcceEEEecccccccc--cccceeHHHHh
Confidence 7789999999999877766 3579999999999988887632 2344 367778999999999 67888887544
No 213
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.07 E-value=0.0067 Score=49.08 Aligned_cols=73 Identities=14% Similarity=-0.016 Sum_probs=53.6
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHH---HHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDM---LKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~m---L~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
+.+++|||+|.|.-+..|+=..+..+|+.+|....- |+.+.. .-+. ++.++++.+|.+.-....||+|+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~------eL~L~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKK------ELGLENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHH------HhCCCCeEEehhhHhhcccccccCcEEEe
Confidence 589999999999888777633456679999998744 444433 2344 488899999988743333999999
Q ss_pred ecc
Q 030823 168 LAL 170 (171)
Q Consensus 168 ~~~ 170 (171)
=|+
T Consensus 142 RAv 144 (215)
T COG0357 142 RAV 144 (215)
T ss_pred ehc
Confidence 776
No 214
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.03 E-value=0.00035 Score=58.52 Aligned_cols=68 Identities=18% Similarity=0.085 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL 170 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~ 170 (171)
....++|+|||.|..+.. .+.-.++|+|++...+..+++ .+.. ...++|+-.+|+.+.+||.+++.|+
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~-------~~~~-~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKR-------SGGD-NVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhcccccc-------CCCc-eeehhhhhcCCCCCCccccchhhhh
Confidence 357789999999966532 144579999999999999864 3321 3477999999999999999998875
No 215
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.87 E-value=0.0012 Score=51.01 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHH
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYD 126 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~ 126 (171)
...++||+||++|.++..+.++. +..+|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999999865 4589999999764
No 216
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.85 E-value=0.0026 Score=53.57 Aligned_cols=77 Identities=10% Similarity=-0.031 Sum_probs=50.9
Q ss_pred CCeEEEEcCCCc----HHHHHHhhcC----CCcEEEEEeCCHHHHHHHHHhhhhh----------------c--c--CC-
Q 030823 92 FPTALCLGGSLE----AVRRLLRGRG----GIEKLIMMDTSYDMLKLCKDAQQDA----------------H--N--DN- 142 (171)
Q Consensus 92 ~~~vLDlGcGtG----~l~~~L~~~~----~~~~v~gvD~S~~mL~~a~~~~~~~----------------~--~--~~- 142 (171)
.-+|+..||+|| .++..|.+.. ..-+|+|+|+|+.+|+.|++-.... . . .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 368999999999 3444444421 1237999999999999998642110 0 0 00
Q ss_pred ------C--ceeEEEccCCCCCCC-CCccceEEEe
Q 030823 143 ------I--ETCFVVGDEEFLPLK-ERYACRFFVL 168 (171)
Q Consensus 143 ------~--~~~~~~~D~e~LPf~-~~sfDlV~s~ 168 (171)
+ .+.|...|....|++ .+.||+|+|-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cR 230 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCR 230 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHh
Confidence 1 256777787665543 6899999983
No 217
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.85 E-value=0.0027 Score=50.91 Aligned_cols=81 Identities=14% Similarity=0.033 Sum_probs=44.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh----hccCC---CceeEEEccCCCCCCCC---
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD----AHNDN---IETCFVVGDEEFLPLKE--- 159 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~----~~~~~---~~~~~~~~D~e~LPf~~--- 159 (171)
.+.+..+|||||.|......+-..+..+.+|+++.+...+.|...... ....+ .++.+..+|.-..++.+
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 356889999999999877666444677899999999888777543211 01112 24555566644333221
Q ss_pred CccceEEEecc
Q 030823 160 RYACRFFVLAL 170 (171)
Q Consensus 160 ~sfDlV~s~~~ 170 (171)
...|+|++|..
T Consensus 121 s~AdvVf~Nn~ 131 (205)
T PF08123_consen 121 SDADVVFVNNT 131 (205)
T ss_dssp HC-SEEEE--T
T ss_pred cCCCEEEEecc
Confidence 45689988753
No 218
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.011 Score=47.57 Aligned_cols=68 Identities=13% Similarity=-0.038 Sum_probs=47.9
Q ss_pred hcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------C
Q 030823 87 DCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------L 157 (171)
Q Consensus 87 ~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--------f 157 (171)
.+-++...|+|||+-+|.+++.+.+.. ....|+++|+-|- .+-.++.++.+|...-+ +
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------------~~~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------------KPIPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------------ccCCCceEEeeeccCccHHHHHHHHc
Confidence 345667999999999999999887643 3346999999541 12234777888765442 3
Q ss_pred CCCccceEEE
Q 030823 158 KERYACRFFV 167 (171)
Q Consensus 158 ~~~sfDlV~s 167 (171)
....+|+|+|
T Consensus 108 ~~~~~DvV~s 117 (205)
T COG0293 108 GGAPVDVVLS 117 (205)
T ss_pred CCCCcceEEe
Confidence 3445799986
No 219
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.44 E-value=0.013 Score=51.45 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---ceeEEEccCCCC-C---CCCCccce
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETCFVVGDEEFL-P---LKERYACR 164 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~---~~~~~~~D~e~L-P---f~~~sfDl 164 (171)
..+|||+=|=||.++.+.+.. ...+|+.||+|...|+.|++... ..++ ...|+++|+-.+ . -....||+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~---LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAE---LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHH---hcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 688999999999999888873 34599999999999999987442 2332 467899997543 2 23459999
Q ss_pred EEE
Q 030823 165 FFV 167 (171)
Q Consensus 165 V~s 167 (171)
|+.
T Consensus 294 Iil 296 (393)
T COG1092 294 IIL 296 (393)
T ss_pred EEE
Confidence 985
No 220
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.39 E-value=0.02 Score=48.66 Aligned_cols=75 Identities=11% Similarity=0.008 Sum_probs=55.7
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCccce
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERYACR 164 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~sfDl 164 (171)
.+...++|.=||.|..+..+.+..+.++|+|+|.+++++..+++... ...-++.++.++...++ ...+++|.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~---~~~~R~~~i~~nF~~l~~~l~~~~~~~vDg 95 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS---DFEGRVVLIHDNFANFFEHLDELLVTKIDG 95 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh---hcCCcEEEEeCCHHHHHHHHHhcCCCcccE
Confidence 35578999999999999999876545899999999999999987542 11225667777666543 23367888
Q ss_pred EEE
Q 030823 165 FFV 167 (171)
Q Consensus 165 V~s 167 (171)
|+.
T Consensus 96 Il~ 98 (305)
T TIGR00006 96 ILV 98 (305)
T ss_pred EEE
Confidence 764
No 221
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.36 E-value=0.016 Score=51.88 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=58.8
Q ss_pred cCCC-eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030823 90 KTFP-TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 90 ~~~~-~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
.+.. ++|-+|||.-.+..++-.. ....|+-+|+|+-.++...... +.......+...|+..+.|+++|||+|+-
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~---~~~~~~~~~~~~d~~~l~fedESFdiVId 120 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRN---AKERPEMQMVEMDMDQLVFEDESFDIVID 120 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcc---ccCCcceEEEEecchhccCCCcceeEEEe
Confidence 3445 8999999999999988764 4679999999998888875422 11223577889999999999999999974
No 222
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.25 E-value=0.014 Score=50.95 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=54.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh--hhh---ccCCCceeEEEccCCCCC-CCCCccc
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ--QDA---HNDNIETCFVVGDEEFLP-LKERYAC 163 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~--~~~---~~~~~~~~~~~~D~e~LP-f~~~sfD 163 (171)
+...+||-+|.|.|.-.+.|.+....++|+.+|+.|+|++-++... ... ...++.++.+..|+.++- -..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 4457899999999999999998655899999999999999986211 000 112334555666655442 3346888
Q ss_pred eEEE
Q 030823 164 RFFV 167 (171)
Q Consensus 164 lV~s 167 (171)
.|+.
T Consensus 368 ~vIV 371 (508)
T COG4262 368 VVIV 371 (508)
T ss_pred EEEE
Confidence 8875
No 223
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.25 E-value=0.013 Score=49.40 Aligned_cols=75 Identities=17% Similarity=0.094 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCC-CC--CCCCccceEE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEF-LP--LKERYACRFF 166 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~-LP--f~~~sfDlV~ 166 (171)
...+|||+=|-||.++...+. +...+|+.||.|...|+.+++...- +.-. -.+.|+++|... +. -..+.||+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 357999999999999987665 3456899999999999999874321 1111 246788888653 22 1357999998
Q ss_pred E
Q 030823 167 V 167 (171)
Q Consensus 167 s 167 (171)
.
T Consensus 201 l 201 (286)
T PF10672_consen 201 L 201 (286)
T ss_dssp E
T ss_pred E
Confidence 6
No 224
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.23 E-value=0.015 Score=50.79 Aligned_cols=72 Identities=7% Similarity=-0.051 Sum_probs=52.8
Q ss_pred CeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC-CCCCccceEEE
Q 030823 93 PTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP-LKERYACRFFV 167 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP-f~~~sfDlV~s 167 (171)
.+|||+-||+|..+..++.+. ...+|+++|++++.++..++... ..+. ++..+.+|+..+- -..+.||+|..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~---~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVE---YNSVENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH---HhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 589999999999999998653 45799999999999999876432 1222 3566777776542 22367999875
No 225
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.19 E-value=0.09 Score=44.56 Aligned_cols=77 Identities=10% Similarity=-0.041 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCC--CcEEEEEeCCHHHHHHHHHhhhhhccCCC-c-eeEEEccCCCC---CCCCCccc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGG--IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E-TCFVVGDEEFL---PLKERYAC 163 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~--~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~-~~~~~~D~e~L---Pf~~~sfD 163 (171)
..-+||||.||.|..........+ ..+|...|.|+.-++..++... ..+. + +.|..+|+... .--+-..+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~---~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIA---ERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHH---HcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 457899999999977655544333 3699999999999999987653 3444 3 37888876532 22244678
Q ss_pred eEEEecc
Q 030823 164 RFFVLAL 170 (171)
Q Consensus 164 lV~s~~~ 170 (171)
++++++|
T Consensus 212 l~iVsGL 218 (311)
T PF12147_consen 212 LAIVSGL 218 (311)
T ss_pred EEEEecc
Confidence 8888875
No 226
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.16 E-value=0.027 Score=46.02 Aligned_cols=58 Identities=10% Similarity=-0.017 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcccC--CCeEEEEcCCCcHHHHHHhhcC--------CCcEEEEEeCCHHHHHHHHHhh
Q 030823 78 AENLLDRLEDCRKT--FPTALCLGGSLEAVRRLLRGRG--------GIEKLIMMDTSYDMLKLCKDAQ 135 (171)
Q Consensus 78 a~~l~~rL~~i~~~--~~~vLDlGcGtG~l~~~L~~~~--------~~~~v~gvD~S~~mL~~a~~~~ 135 (171)
|..+++.......+ .-+|+|+|+|+|.++..+.... ..-+++.+|+|+.+.+.-++..
T Consensus 3 a~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L 70 (252)
T PF02636_consen 3 ARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL 70 (252)
T ss_dssp HHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence 33444444444322 3689999999999988875411 1248999999999988876654
No 227
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.15 E-value=0.0031 Score=51.87 Aligned_cols=93 Identities=17% Similarity=0.087 Sum_probs=63.6
Q ss_pred CChHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeE
Q 030823 69 PNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF 147 (171)
Q Consensus 69 ~~~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~ 147 (171)
..++|.|..+.- ..+ .++..+|||.+.|-|..+..-.+++ .-+|+-++-.+..|+.|.-..-+-....+.+..
T Consensus 116 ~tdP~~Dt~~Kv-----~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i 189 (287)
T COG2521 116 GTDPLEDTLAKV-----ELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKI 189 (287)
T ss_pred CcCcHHHHHhhh-----heeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEE
Confidence 356666665532 222 2357899999999999998888754 239999999999999885211000001123566
Q ss_pred EEccCCCC--CCCCCccceEEE
Q 030823 148 VVGDEEFL--PLKERYACRFFV 167 (171)
Q Consensus 148 ~~~D~e~L--Pf~~~sfDlV~s 167 (171)
+.||+..+ .|+|+|||+|+.
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ecccHHHHHhcCCccccceEee
Confidence 88997655 599999999974
No 228
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.14 E-value=0.00057 Score=55.34 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=37.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~ 134 (171)
...-++||+|+|.|.++..+++. ..+|++.++|..|.++.+.+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~--feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT--FEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch--HHHHHHHHhhHHHHHHHhhc
Confidence 34568999999999999999984 47899999999999998753
No 229
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.11 E-value=0.026 Score=48.67 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=62.0
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF 166 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~ 166 (171)
..+..+|+|+=+|-|.++..++..+... |+++|+.|..+...++... ..++ .+..++||....+..-+.+|-|+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~---LN~v~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIR---LNKVEGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHH---hcCccceeeEEeccHHHhhhccccCCEEE
Confidence 3457999999999999999998855433 9999999999988876432 2333 26789999998887669999999
Q ss_pred Eecc
Q 030823 167 VLAL 170 (171)
Q Consensus 167 s~~~ 170 (171)
++..
T Consensus 262 m~~p 265 (341)
T COG2520 262 MGLP 265 (341)
T ss_pred eCCC
Confidence 8754
No 230
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.93 E-value=0.059 Score=45.21 Aligned_cols=79 Identities=11% Similarity=0.084 Sum_probs=45.1
Q ss_pred CCeEEEEcCCCcHHHHHH-hh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 92 FPTALCLGGSLEAVRRLL-RG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L-~~-~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
+.+|+-||||+=-++..+ ++ .+....|+++|.+++.++.+++.......-+..+.|+.+|....+..-..||+|+..|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 459999999987665544 33 2344689999999999999987542100113357889999888876668999999887
Q ss_pred c
Q 030823 170 L 170 (171)
Q Consensus 170 ~ 170 (171)
+
T Consensus 201 l 201 (276)
T PF03059_consen 201 L 201 (276)
T ss_dssp T
T ss_pred h
Confidence 6
No 231
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.88 E-value=0.035 Score=47.09 Aligned_cols=74 Identities=11% Similarity=0.014 Sum_probs=42.4
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEcc-CCC----CCCCCCccceE
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGD-EEF----LPLKERYACRF 165 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D-~e~----LPf~~~sfDlV 165 (171)
-++||||||..-+...|..+....+++|.|+++..++.|++.... +++. .+..+... ... +-.+++.||+.
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~--N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVER--NPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHH--T-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHh--ccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 479999999998877775433458999999999999999875431 2233 24333322 222 12235789999
Q ss_pred EEe
Q 030823 166 FVL 168 (171)
Q Consensus 166 ~s~ 168 (171)
+||
T Consensus 182 mCN 184 (299)
T PF05971_consen 182 MCN 184 (299)
T ss_dssp EE-
T ss_pred ecC
Confidence 886
No 232
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.82 E-value=0.066 Score=43.51 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=58.2
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCC-ccceEEEe
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKER-YACRFFVL 168 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~-sfDlV~s~ 168 (171)
+.+..+.|+||=-+.+...|.+..+...+++.|+++.-++.|.+.... ......+....+|. ..++..+ .+|+|+..
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~-~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIA 92 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK-NNLSERIDVRLGDG-LAVLELEDEIDVIVIA 92 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh-cCCcceEEEeccCC-ccccCccCCcCEEEEe
Confidence 344569999999999999999888889999999999999999764321 01111344455676 4456555 89999987
Q ss_pred cc
Q 030823 169 AL 170 (171)
Q Consensus 169 ~~ 170 (171)
++
T Consensus 93 GM 94 (226)
T COG2384 93 GM 94 (226)
T ss_pred CC
Confidence 65
No 233
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.60 E-value=0.02 Score=45.88 Aligned_cols=73 Identities=14% Similarity=0.010 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL 170 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~ 170 (171)
...+|||+|+|+|..+..-...+ ...|+..|+.+..+...+- |+...++.+.++..|.-. .+..||+|+...|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~l---Na~angv~i~~~~~d~~g---~~~~~Dl~LagDl 151 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRL---NAAANGVSILFTHADLIG---SPPAFDLLLAGDL 151 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhc---chhhccceeEEeeccccC---CCcceeEEEeece
Confidence 34789999999999887776643 4689999999877776542 112345566666655433 6789999987654
No 234
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.086 Score=45.58 Aligned_cols=91 Identities=15% Similarity=0.021 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC--CcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEE
Q 030823 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG--IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFV 148 (171)
Q Consensus 72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~--~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~ 148 (171)
+++++.++.. ..+.+ ..+..+|||++++.|.=+.++++... ...|+++|.++.-+...++... .-++ ++..+
T Consensus 139 ~vQd~sS~l~-a~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~---RlG~~nv~~~ 213 (355)
T COG0144 139 YVQDEASQLP-ALVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK---RLGVRNVIVV 213 (355)
T ss_pred EEcCHHHHHH-HHHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHH---HcCCCceEEE
Confidence 3444444333 33332 35679999999999988888876432 2457999999998888776543 3444 34567
Q ss_pred EccCCCCC---CCCCccceEEE
Q 030823 149 VGDEEFLP---LKERYACRFFV 167 (171)
Q Consensus 149 ~~D~e~LP---f~~~sfDlV~s 167 (171)
..|...++ ...+.||.|+.
T Consensus 214 ~~d~~~~~~~~~~~~~fD~iLl 235 (355)
T COG0144 214 NKDARRLAELLPGGEKFDRILL 235 (355)
T ss_pred ecccccccccccccCcCcEEEE
Confidence 77776654 22235999985
No 235
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.54 E-value=0.039 Score=45.13 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEE
Q 030823 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFV 148 (171)
Q Consensus 71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~ 148 (171)
..-.+.++..++.+..... ..+.|+|.-||.|..+..++-++ ..|+++|+++.-+..|+...+ .-|+ .++|+
T Consensus 75 svTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNae---iYGI~~rItFI 148 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAE---VYGVPDRITFI 148 (263)
T ss_pred EeccHHHHHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccce---eecCCceeEEE
Confidence 3444566666666655544 45788998888888877777644 689999999999999875332 2333 68899
Q ss_pred EccCC----CCCCCCCccceEEE
Q 030823 149 VGDEE----FLPLKERYACRFFV 167 (171)
Q Consensus 149 ~~D~e----~LPf~~~sfDlV~s 167 (171)
+||.- .+-|...-+|+|+.
T Consensus 149 ~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 149 CGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred echHHHHHHHHhhhhheeeeeec
Confidence 99853 33455555666654
No 236
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.43 E-value=0.11 Score=41.18 Aligned_cols=75 Identities=13% Similarity=0.029 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC-CCCC--CccceEEE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLKE--RYACRFFV 167 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-Pf~~--~sfDlV~s 167 (171)
...++||+=+|+|.++..-..++ ...++.+|.+.+.+...++.... .....+...+..|+... +-.. +.||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~-l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKA-LGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHH-hCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 45899999999999987776654 57999999999999998764321 11113455566776633 2222 35999985
No 237
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.36 E-value=0.039 Score=46.18 Aligned_cols=94 Identities=16% Similarity=0.039 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeE
Q 030823 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCF 147 (171)
Q Consensus 70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~ 147 (171)
+=++++..+......|. ..+...|||++++.|.=+.++++.. ..+.|+++|+++.-+...++... ..+. ++..
T Consensus 66 ~~~vQd~sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~---r~g~~~v~~ 140 (283)
T PF01189_consen 66 LFYVQDESSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLK---RLGVFNVIV 140 (283)
T ss_dssp SEEEHHHHHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHH---HTT-SSEEE
T ss_pred cEEeccccccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHH---hcCCceEEE
Confidence 33445555444443332 3567889999999998888887643 36799999999999988876543 2444 3444
Q ss_pred EEccCCCC-C-CCCCccceEEEe
Q 030823 148 VVGDEEFL-P-LKERYACRFFVL 168 (171)
Q Consensus 148 ~~~D~e~L-P-f~~~sfDlV~s~ 168 (171)
+..|...+ + .....||.|+.-
T Consensus 141 ~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 141 INADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp EESHHHHHHHHHHTTTEEEEEEE
T ss_pred EeeccccccccccccccchhhcC
Confidence 54666555 2 233469999863
No 238
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.25 E-value=0.026 Score=45.11 Aligned_cols=35 Identities=14% Similarity=0.015 Sum_probs=30.2
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeC
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDT 123 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~ 123 (171)
.++..+|||+||.+|.+++...++. |.+.|.|+|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 4567999999999999998876644 7899999998
No 239
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.22 E-value=0.12 Score=43.59 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=57.5
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCC--CCCccce
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPL--KERYACR 164 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf--~~~sfDl 164 (171)
++..+|++-|.|+|.++..+++. ++.++++-+|..+...+.|.+... ..++ ++++++-|.....| ++..+|.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr---~hgi~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFR---EHGIGDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHH---HhCCCcceEEEEeecccCCccccccccce
Confidence 57899999999999999999863 367899999999988888877653 2333 57777777665544 4678888
Q ss_pred EEE
Q 030823 165 FFV 167 (171)
Q Consensus 165 V~s 167 (171)
|+.
T Consensus 181 VFL 183 (314)
T KOG2915|consen 181 VFL 183 (314)
T ss_pred EEE
Confidence 874
No 240
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.16 E-value=0.035 Score=40.33 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=25.7
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeC
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT 123 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~ 123 (171)
.++....|||||.|.+...|...+ -.-+|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EG--y~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEG--YPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCC--CCcccccc
Confidence 357789999999999998887643 46788887
No 241
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.16 E-value=0.033 Score=48.45 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=59.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
.+...++|+|||-|-....+.. +....++|+|.++.-+.++........... ...++++|.-..||+++.||.+.++.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~-k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDN-KCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhh-hcceehhhhhcCCCCccccCcEEEEe
Confidence 4455799999999999988875 345799999999999988876543211111 23348899999999999999998764
No 242
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.03 E-value=0.17 Score=41.22 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCH----HHHHHHHHhhhhhccCCCc
Q 030823 71 DSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSY----DMLKLCKDAQQDAHNDNIE 144 (171)
Q Consensus 71 ~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~----~mL~~a~~~~~~~~~~~~~ 144 (171)
++.+-.++..+..-+..+ -.+..+||.+|..+|....++.. -++.+.|++++.|+ +++..|++ ..|
T Consensus 52 ~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------R~N 123 (229)
T PF01269_consen 52 NPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------RPN 123 (229)
T ss_dssp -TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------STT
T ss_pred CchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------CCc
Confidence 444445555554444433 24668999999999988888864 23467999999999 45555543 345
Q ss_pred eeEEEccCCCC---CCCCCccceEEE
Q 030823 145 TCFVVGDEEFL---PLKERYACRFFV 167 (171)
Q Consensus 145 ~~~~~~D~e~L---Pf~~~sfDlV~s 167 (171)
+..+..|+..- ..--+.+|+|++
T Consensus 124 IiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 124 IIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp EEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred eeeeeccCCChHHhhcccccccEEEe
Confidence 77788887632 111358898876
No 243
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.69 E-value=0.087 Score=42.92 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhc--ccCCCeEEEEcCCCcHHHHHH--hhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823 76 AVAENLLDRLEDC--RKTFPTALCLGGSLEAVRRLL--RGRGGIEKLIMMDTSYDMLKLCKDA 134 (171)
Q Consensus 76 ~va~~l~~rL~~i--~~~~~~vLDlGcGtG~l~~~L--~~~~~~~~v~gvD~S~~mL~~a~~~ 134 (171)
++|.++.+|-... ...+-++-|-+||+|.+.-.+ ........|++.|+++++|+.|++.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN 96 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN 96 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence 4455555554322 344568899999999987655 3444678999999999999998753
No 244
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.64 E-value=0.15 Score=42.52 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCc----HHHHHHhhcCC-----CcEEEEEeCCHHHHHHHHH
Q 030823 91 TFPTALCLGGSLE----AVRRLLRGRGG-----IEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 91 ~~~~vLDlGcGtG----~l~~~L~~~~~-----~~~v~gvD~S~~mL~~a~~ 133 (171)
..-+|+-.||+|| .++..|.+..+ .-+|++.|+|..+|+.|++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 3578999999999 45555555432 3489999999999999975
No 245
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.61 E-value=0.19 Score=41.09 Aligned_cols=76 Identities=14% Similarity=0.030 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccC-CCCC-----CCCCc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDE-EFLP-----LKERY 161 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~-e~LP-----f~~~s 161 (171)
...++||||.=||.-+..++..- ..++|+++|+.++-.+.+.+..+ ..++ ++.++++++ +.|+ .+.++
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k---~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK---LAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH---hccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 45789999999998777665432 46899999999999998866442 3443 578888875 3332 45799
Q ss_pred cceEEEec
Q 030823 162 ACRFFVLA 169 (171)
Q Consensus 162 fDlV~s~~ 169 (171)
||.++.-+
T Consensus 150 fDfaFvDa 157 (237)
T KOG1663|consen 150 FDFAFVDA 157 (237)
T ss_pred eeEEEEcc
Confidence 99998643
No 246
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.23 Score=43.19 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHhcccC-CCeEEEEcCCCcHHHHHHhhc--------CCCcEEEEEeCCHHHHHHHHHhh
Q 030823 71 DSFVDAVAENLLDRLEDCRKT-FPTALCLGGSLEAVRRLLRGR--------GGIEKLIMMDTSYDMLKLCKDAQ 135 (171)
Q Consensus 71 ~~l~~~va~~l~~rL~~i~~~-~~~vLDlGcGtG~l~~~L~~~--------~~~~~v~gvD~S~~mL~~a~~~~ 135 (171)
..+-+.++..++.-++.+..+ .-.++++|.|+|.+...+.+. +...++..|++|++...+=++..
T Consensus 56 ~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L 129 (370)
T COG1565 56 QLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL 129 (370)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence 344455666666666665554 456999999999998777542 23569999999999988765543
No 247
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.26 E-value=0.15 Score=42.45 Aligned_cols=66 Identities=14% Similarity=-0.015 Sum_probs=48.9
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC--CCccceEEEe
Q 030823 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK--ERYACRFFVL 168 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~--~~sfDlV~s~ 168 (171)
+++|+-||.|.++..+...+ ...++++|+++..++..+.. .+. ..+.+|...+... ...+|+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N-----~~~---~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEAN-----FPN---KLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHh-----CCC---CCccCccccCchhhcCCCCCEEEeC
Confidence 58999999999998888754 67889999999998887642 122 1456777766532 3579998864
No 248
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.93 E-value=0.27 Score=41.95 Aligned_cols=74 Identities=14% Similarity=-0.010 Sum_probs=48.1
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-CCCccc
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-KERYAC 163 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-~~~sfD 163 (171)
.+...++|.=-|.|-.+..+.+..+..+|+|+|-.+++++.+++... .....+.++.++...++ . ..+.+|
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~---~~~~r~~~~~~~F~~l~~~l~~~~~~~~~d 95 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK---KFDDRFIFIHGNFSNLDEYLKELNGINKVD 95 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC---CCCTTEEEEES-GGGHHHHHHHTTTTS-EE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh---hccceEEEEeccHHHHHHHHHHccCCCccC
Confidence 45678999999999999999987666999999999999999986432 12335666776655442 2 334666
Q ss_pred eEE
Q 030823 164 RFF 166 (171)
Q Consensus 164 lV~ 166 (171)
-|+
T Consensus 96 giL 98 (310)
T PF01795_consen 96 GIL 98 (310)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 249
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.88 E-value=0.062 Score=44.17 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=35.1
Q ss_pred cccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHH
Q 030823 88 CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL 130 (171)
Q Consensus 88 i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~ 130 (171)
+..+...+||+|+.||-++..+.+++ ..+|+++|.....|.-
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~ 117 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHW 117 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCH
Confidence 45567899999999999999999864 5799999999866644
No 250
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.64 E-value=0.089 Score=42.63 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=36.2
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ 136 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~ 136 (171)
-...|||||-|.+...|.+.+|..-|+|+++=-..-+..++++.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ 105 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQ 105 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHH
Confidence 45799999999999999998999999999997666666555443
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.21 E-value=0.42 Score=38.70 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=62.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823 67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET 145 (171)
Q Consensus 67 ~~~~~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~ 145 (171)
|+.-++.+...|..+..-|..+ .++..+||-||..+|....++..--+.+.+++++.|+.+....-..+ ....++
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a----~~R~Ni 126 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA----EKRPNI 126 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH----HhCCCc
Confidence 3334555556666665555533 35678999999999999888876444679999999987665533222 123456
Q ss_pred eEEEccCCCC---CCCCCccceEEE
Q 030823 146 CFVVGDEEFL---PLKERYACRFFV 167 (171)
Q Consensus 146 ~~~~~D~e~L---Pf~~~sfDlV~s 167 (171)
..+.+|+..- -+-=+.+|+|+.
T Consensus 127 ~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 127 IPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred eeeecccCCcHHhhhhcccccEEEE
Confidence 6677776532 122355787764
No 252
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=93.02 E-value=0.081 Score=40.26 Aligned_cols=26 Identities=15% Similarity=0.015 Sum_probs=23.5
Q ss_pred ceeEEEccCCCCCCCCCccceEEEec
Q 030823 144 ETCFVVGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 144 ~~~~~~~D~e~LPf~~~sfDlV~s~~ 169 (171)
++.|+++|++.+|+++++||+|++..
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~ 52 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGY 52 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecc
Confidence 47789999999999999999999864
No 253
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.97 E-value=0.45 Score=36.94 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
++.++++.. ...+.+.|||.=||+|..+..-.+.+ .+.+|+|++++..+.|.
T Consensus 179 ~l~~~lI~~---~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 179 ELIERLIKA---STNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHH---HS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHh---hhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhc
Confidence 444444432 34577999999999999988777643 68999999999999885
No 254
>PRK10742 putative methyltransferase; Provisional
Probab=92.94 E-value=0.55 Score=38.90 Aligned_cols=73 Identities=10% Similarity=0.027 Sum_probs=49.3
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh-cc----CC--CceeEEEccCCCC-CCCCCccce
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA-HN----DN--IETCFVVGDEEFL-PLKERYACR 164 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~-~~----~~--~~~~~~~~D~e~L-Pf~~~sfDl 164 (171)
++|||+=+|+|..+..++.++ .+|+++|-++.+....++-.... .. .. -++..+.+|...+ .-..++||+
T Consensus 90 p~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred CEEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 489999999999999998854 57999999998877765433211 00 11 1355566775433 322348999
Q ss_pred EEE
Q 030823 165 FFV 167 (171)
Q Consensus 165 V~s 167 (171)
|+.
T Consensus 168 VYl 170 (250)
T PRK10742 168 VYL 170 (250)
T ss_pred EEE
Confidence 984
No 255
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.73 E-value=0.42 Score=39.58 Aligned_cols=98 Identities=12% Similarity=-0.008 Sum_probs=56.2
Q ss_pred CCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc--e
Q 030823 68 RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE--T 145 (171)
Q Consensus 68 ~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~--~ 145 (171)
+..+|++ .+++.|.+--..+..+.-++||||.|.--+...+-.+......+|.|+++..+..|+.... .+++.+ +
T Consensus 56 gRAdYih-~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~--~N~~l~~~I 132 (292)
T COG3129 56 GRADYIH-HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIIS--ANPGLERAI 132 (292)
T ss_pred ChhHHHH-HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHH--cCcchhhhe
Confidence 4456655 3333332211112334568999999988777766544445799999999999999976442 233332 2
Q ss_pred eEEE-ccCCCC-C---CCCCccceEEEe
Q 030823 146 CFVV-GDEEFL-P---LKERYACRFFVL 168 (171)
Q Consensus 146 ~~~~-~D~e~L-P---f~~~sfDlV~s~ 168 (171)
.... -|...+ + -..+.||.++||
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCN 160 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCN 160 (292)
T ss_pred eEEeccCccccccccccccceeeeEecC
Confidence 2221 222221 1 125778887776
No 256
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.62 E-value=0.57 Score=42.09 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=35.4
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~ 135 (171)
+-.+||||.|||.++-.-.+.+ ...|++++.=..|.+.|+..-
T Consensus 67 kv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~ 109 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIM 109 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHH
Confidence 4568999999999987665544 578999999999999998643
No 257
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.69 E-value=1.7 Score=38.39 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~ 135 (171)
.-+.++|+|.|-|++++.|.-.+ .-.|.++|-|+....+|+...
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHHHH
Confidence 44789999999999999997533 359999999998888887543
No 258
>PHA01634 hypothetical protein
Probab=90.38 E-value=2 Score=32.50 Aligned_cols=61 Identities=10% Similarity=-0.000 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (171)
Q Consensus 69 ~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~ 135 (171)
.-+|+++..-+. ..+.....+|+|||.+-|.-+..+.-+ ....|+++++++.+.+..++.+
T Consensus 11 ~c~ywrey~~~Y-----~~idvk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~ 71 (156)
T PHA01634 11 ECDYWREYPHAY-----GMLNVYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVC 71 (156)
T ss_pred cchHHHHHHHHh-----hheeecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHh
Confidence 345665554322 123345689999999999998888764 3579999999999999987643
No 259
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=90.33 E-value=0.85 Score=38.17 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=34.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
+...+||--|||.|.++-.++..+ -.+.|.|.|--|+-...
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASN 95 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHH
Confidence 345789999999999999999854 59999999999986653
No 260
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=90.32 E-value=1.4 Score=38.03 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=45.3
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCCCCCccceEEEec
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKERYACRFFVLA 169 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf~~~sfDlV~s~~ 169 (171)
+..++|+|.|.|.++..+...+ .+|-+++.....+..+.... . ++ +..+.+|+-. .|-. |+|++-.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f--p~ik~infdlp~v~~~a~~~---~-~g--V~~v~gdmfq~~P~~----daI~mkW 244 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY--PHIKGINFDLPFVLAAAPYL---A-PG--VEHVAGDMFQDTPKG----DAIWMKW 244 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC--CCCceeecCHHHHHhhhhhh---c-CC--cceecccccccCCCc----CeEEEEe
Confidence 5789999999999999998744 46888888877776664321 1 23 5667777543 4432 3777643
No 261
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=89.81 E-value=0.6 Score=38.76 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=26.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a 131 (171)
.+..++||||||+-.. ..|.-.....+|+..|.++.-++..
T Consensus 55 ~~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el 95 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREEL 95 (256)
T ss_dssp S-EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHH
T ss_pred cCCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHH
Confidence 3457899999999543 3443222457999999998776644
No 262
>PRK11524 putative methyltransferase; Provisional
Probab=89.78 E-value=1.6 Score=36.38 Aligned_cols=45 Identities=9% Similarity=-0.034 Sum_probs=38.2
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~ 135 (171)
..+.+.|||.=||+|..+..-.+. ..+.+|+|++++..+.|.++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHH
Confidence 467899999999999988777663 379999999999999998764
No 263
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=89.52 E-value=1.1 Score=36.47 Aligned_cols=57 Identities=14% Similarity=-0.013 Sum_probs=36.9
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC---CCCccceEEEec
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KERYACRFFVLA 169 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf---~~~sfDlV~s~~ 169 (171)
-++|||||=+......-. +.-.|+.||+.+ ..+++ ...|.-..|+ +++.||+|+++=
T Consensus 53 lrlLEVGals~~N~~s~~---~~fdvt~IDLns-------------~~~~I----~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS---GWFDVTRIDLNS-------------QHPGI----LQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ceEEeecccCCCCccccc---CceeeEEeecCC-------------CCCCc----eeeccccCCCCCCcccceeEEEEEE
Confidence 589999998654433222 223599999964 12332 4566666665 478999998763
No 264
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=89.51 E-value=1.9 Score=38.89 Aligned_cols=94 Identities=11% Similarity=-0.109 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC---C-CcEEEEEeCCHHHHHHHHHhhhhhccCCCc-
Q 030823 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG---G-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIE- 144 (171)
Q Consensus 70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~---~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~- 144 (171)
.-|...+|.+.|+..+.. .+..+|.|-.||+|.+........ . ...++|.|..+.+...++-... ..+++
T Consensus 167 EfyTP~~v~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~---lhgi~~ 241 (489)
T COG0286 167 EFYTPREVSELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLI---LHGIEG 241 (489)
T ss_pred ccCChHHHHHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHH---HhCCCc
Confidence 345556677777666553 344589999999998765554311 1 2568999999999999874221 22332
Q ss_pred -eeEEEccCCCCC-----CCCCccceEEEe
Q 030823 145 -TCFVVGDEEFLP-----LKERYACRFFVL 168 (171)
Q Consensus 145 -~~~~~~D~e~LP-----f~~~sfDlV~s~ 168 (171)
+....+|--.-| ...+.||.|++|
T Consensus 242 ~~~i~~~dtl~~~~~~~~~~~~~~D~viaN 271 (489)
T COG0286 242 DANIRHGDTLSNPKHDDKDDKGKFDFVIAN 271 (489)
T ss_pred cccccccccccCCcccccCCccceeEEEeC
Confidence 233344433333 234679999886
No 265
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.19 E-value=1.4 Score=38.02 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=46.2
Q ss_pred cCCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEc-cCCCCCCCCCccceEEE
Q 030823 90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFLPLKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~-D~e~LPf~~~sfDlV~s 167 (171)
++...|+-+|+| -|+++..+++.-. .+|+++|.|++-++.|++. +... ++.. |.+.++--.+.||+|+.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l-------GAd~-~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL-------GADH-VINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh-------CCcE-EEEcCCchhhHHhHhhCcEEEE
Confidence 467889988887 3466677776333 8999999999999998763 2222 2222 33333322334999987
Q ss_pred ec
Q 030823 168 LA 169 (171)
Q Consensus 168 ~~ 169 (171)
..
T Consensus 236 tv 237 (339)
T COG1064 236 TV 237 (339)
T ss_pred CC
Confidence 64
No 266
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=88.80 E-value=0.5 Score=41.53 Aligned_cols=78 Identities=14% Similarity=-0.058 Sum_probs=40.3
Q ss_pred CCeEEEEcCCCcHHHHHHh--------hc-------CCCcEEEEEeCCHHHHHH-HHHhhh---h-------hccCCCce
Q 030823 92 FPTALCLGGSLEAVRRLLR--------GR-------GGIEKLIMMDTSYDMLKL-CKDAQQ---D-------AHNDNIET 145 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~--------~~-------~~~~~v~gvD~S~~mL~~-a~~~~~---~-------~~~~~~~~ 145 (171)
...|+|+|||+|.++..+. ++ .+.-+|+.-|+-..--+. .+.... . ....+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 4589999999997664431 11 123477777874321111 110000 0 00011122
Q ss_pred eEEEc---cCCCCCCCCCccceEEEec
Q 030823 146 CFVVG---DEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 146 ~~~~~---D~e~LPf~~~sfDlV~s~~ 169 (171)
.|+.+ ....=-||++|.++++|+.
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~ 170 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAF 170 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeec
Confidence 34443 3333358999999999864
No 267
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=88.65 E-value=3.4 Score=35.31 Aligned_cols=74 Identities=14% Similarity=0.025 Sum_probs=52.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCccc
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERYAC 163 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~sfD 163 (171)
.+....+|.--|.|-.++.+.+..+ .++++++|-.+..++.|++... .-+..+.++.+....+. ...+.+|
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~---~~~~r~~~v~~~F~~l~~~l~~~~i~~vD 98 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK---EFDGRVTLVHGNFANLAEALKELGIGKVD 98 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh---ccCCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence 4558899999999999999987654 5689999999999999988542 12335666666444332 2234566
Q ss_pred eEE
Q 030823 164 RFF 166 (171)
Q Consensus 164 lV~ 166 (171)
-|+
T Consensus 99 GiL 101 (314)
T COG0275 99 GIL 101 (314)
T ss_pred EEE
Confidence 554
No 268
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=88.56 E-value=1.5 Score=39.09 Aligned_cols=76 Identities=13% Similarity=0.033 Sum_probs=53.4
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC---CCCCccc
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP---LKERYAC 163 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP---f~~~sfD 163 (171)
.++..+|||+++.+|.=+-+++. ....+.|++.|.+++-+....+.. +.-++ ++..+..|...+| |+. +||
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~---~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANL---HRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHH---HHhCCCceEEEccCcccccccccCc-ccc
Confidence 46789999999999965555543 124579999999999888876543 23444 3444557777666 555 999
Q ss_pred eEEEe
Q 030823 164 RFFVL 168 (171)
Q Consensus 164 lV~s~ 168 (171)
-|..-
T Consensus 315 RVLLD 319 (460)
T KOG1122|consen 315 RVLLD 319 (460)
T ss_pred eeeec
Confidence 99753
No 269
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=88.22 E-value=2.4 Score=34.75 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=42.3
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh-ccCCC------ceeEEEccCC-CCCCCCCccce
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA-HNDNI------ETCFVVGDEE-FLPLKERYACR 164 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~-~~~~~------~~~~~~~D~e-~LPf~~~sfDl 164 (171)
++|||.=+|-|.=+..++..+ .+|++++-|+-+-...++-.... ..... .++.+.+|.. .|+.++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 589999999998888887643 68999999986655543221110 12222 4667788864 46777899999
Q ss_pred EEE
Q 030823 165 FFV 167 (171)
Q Consensus 165 V~s 167 (171)
|+.
T Consensus 155 VY~ 157 (234)
T PF04445_consen 155 VYF 157 (234)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 270
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=87.98 E-value=0.13 Score=35.90 Aligned_cols=68 Identities=22% Similarity=0.126 Sum_probs=20.6
Q ss_pred EEEcCCCcHHHHHHhhcCC-C--cEEEEEeCCHH---HHHHHHHhhhhhccCCCceeEEEccCCC-CC-CCCCccceEEE
Q 030823 96 LCLGGSLEAVRRLLRGRGG-I--EKLIMMDTSYD---MLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-LKERYACRFFV 167 (171)
Q Consensus 96 LDlGcGtG~l~~~L~~~~~-~--~~v~gvD~S~~---mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LP-f~~~sfDlV~s 167 (171)
||+|+..|..+..+.+..+ . .+++++|..+. .-+..++. .....+.++.++... ++ ++++++|+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~-----~~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKA-----GLSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------G-----GG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhc-----CCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 6899999988877765321 1 37999999985 22222221 112247778887642 22 33689999886
Q ss_pred e
Q 030823 168 L 168 (171)
Q Consensus 168 ~ 168 (171)
-
T Consensus 76 D 76 (106)
T PF13578_consen 76 D 76 (106)
T ss_dssp E
T ss_pred C
Confidence 4
No 271
>PRK13699 putative methylase; Provisional
Probab=87.21 E-value=3.2 Score=33.58 Aligned_cols=45 Identities=4% Similarity=-0.172 Sum_probs=37.7
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~ 135 (171)
..+.+.|||-=||+|..+..-.+. ..+.+|+|++++..+.+.++.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHH
Confidence 357789999999999998877763 368999999999999987654
No 272
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.08 E-value=1.3 Score=36.80 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=42.6
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC-----CCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCC
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRG-----GIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPL 157 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~-----~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf 157 (171)
.+...++|+|||.|.++..+.... +...++.||-...-....... .... +.+..+..|++.+.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~----~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKI----RKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhh----hccCCCCceEEEEEEeeccch
Confidence 455689999999999999997644 345889999854333322211 1122 457778888887754
No 273
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=85.51 E-value=1.9 Score=36.97 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=36.0
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+..+||.+|||+ |..+..+++.....+++++|.++++++.+++
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 3457899999988 8888888775554579999999999999875
No 274
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=85.40 E-value=7.3 Score=32.16 Aligned_cols=73 Identities=18% Similarity=0.092 Sum_probs=37.9
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCCC-CCCccceEEEe
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLPL-KERYACRFFVL 168 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LPf-~~~sfDlV~s~ 168 (171)
..+||.+|-+.- .+..++-.+..++|+.+|+.+.+++--++... ..+.++..+..|.. .||- --+.||++++.
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~---~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAE---EEGLPIEAVHYDLRDPLPEELRGKFDVFFTD 119 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHH---HHT--EEEE---TTS---TTTSS-BSEEEE-
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHH---HcCCceEEEEecccccCCHHHhcCCCEEEeC
Confidence 578999985443 33334333456899999999999988765432 34556777778864 4442 14899999863
No 275
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=84.80 E-value=2.3 Score=39.05 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHhccc-CCCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823 71 DSFVDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET 145 (171)
Q Consensus 71 ~~l~~~va~~l~~rL~~i~~-~~~~vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~ 145 (171)
+..+++|...|.||..+... ....|+-+|.|.|-+.....+ ....-++++++-.|..+--.+.... ..-+-.+
T Consensus 346 ~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~--~~W~~~V 423 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF--ECWDNRV 423 (649)
T ss_pred HHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch--hhhcCee
Confidence 34455666777777655422 245678999999987665532 2223488999998877665543211 0112357
Q ss_pred eEEEccCCCCCCCCCccceEEE
Q 030823 146 CFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 146 ~~~~~D~e~LPf~~~sfDlV~s 167 (171)
+.+..|+..++-+.+..|+++|
T Consensus 424 tii~~DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 424 TIISSDMRKWNAPREQADIIVS 445 (649)
T ss_pred EEEeccccccCCchhhccchHH
Confidence 7888999999955599999886
No 276
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=84.58 E-value=2.8 Score=32.30 Aligned_cols=34 Identities=18% Similarity=0.018 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCC
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S 124 (171)
-..-|||+|=|.|..-.+|.+..+...|+.+|-.
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 3477999999999999999998888999999963
No 277
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=83.22 E-value=2.9 Score=30.72 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=23.7
Q ss_pred EEcCCCc--HHHHHHh--hcCCCcEEEEEeCCHHHHHHHHHh
Q 030823 97 CLGGSLE--AVRRLLR--GRGGIEKLIMMDTSYDMLKLCKDA 134 (171)
Q Consensus 97 DlGcGtG--~l~~~L~--~~~~~~~v~gvD~S~~mL~~a~~~ 134 (171)
|||++.| .....+. ..++..+|+++|+++.+.+..++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5554442 334668999999999998877654
No 278
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=82.24 E-value=5.8 Score=32.86 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHH
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL 130 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~ 130 (171)
.+.+||++|+|+|..+...+-. ...+|+..|+..-+..-
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~~~~L 124 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL-LGAEVVLTDLPKVVENL 124 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH-hcceeccCCchhhHHHH
Confidence 3567999999999777666542 34689999987654443
No 279
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=82.20 E-value=2.6 Score=34.60 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=46.8
Q ss_pred eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC---CCCCccceEEEe
Q 030823 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKERYACRFFVL 168 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP---f~~~sfDlV~s~ 168 (171)
+++|+=||-|.+...|...+ ...++++|+++...+.-+.. .+ ....+|...+. ++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N-----~~----~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKAN-----FP----EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHH-----HT----EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhc-----cc----ccccccccccccccccc-cceEEEec
Confidence 68999999999999998754 67899999999987776542 12 45678877774 544 58988754
No 280
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=81.87 E-value=14 Score=30.43 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=50.7
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC-CCCCccceEEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKERYACRFFV 167 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LP-f~~~sfDlV~s 167 (171)
.+..+||.+|-|-|...-.+.+..+. +=+.++..++.+++-++-.- ...-++..+.+--| .+| +++++||-|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw---~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGW---REKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccc---ccccceEEEecchHhhhccccccCcceeEe
Confidence 46789999999999999888876554 44568999999998865110 00113444455433 333 77899998864
No 281
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.68 E-value=4.1 Score=34.88 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=35.1
Q ss_pred CeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 93 PTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 93 ~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+|+-+|||+ |.++..+++.....+|+.+|.+++-++.|++
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 4899999997 6777777776677899999999999999976
No 282
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=81.01 E-value=4.3 Score=33.94 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=59.2
Q ss_pred CCCChHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCH----HHHHHHHHhhhhhcc
Q 030823 67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSY----DMLKLCKDAQQDAHN 140 (171)
Q Consensus 67 ~~~~~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~----~mL~~a~~~~~~~~~ 140 (171)
|.--.+++..+|.-+.--+..+ ..+..+||-||+++|..-.+... .++.+-|++++.|+ ++++.|+
T Consensus 131 yRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk-------- 202 (317)
T KOG1596|consen 131 YRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK-------- 202 (317)
T ss_pred EEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--------
Confidence 4445667777777666555544 45778999999999977766654 34678999999986 4555554
Q ss_pred CCCceeEEEccCCCCC---CCCCccceEEE
Q 030823 141 DNIETCFVVGDEEFLP---LKERYACRFFV 167 (171)
Q Consensus 141 ~~~~~~~~~~D~e~LP---f~~~sfDlV~s 167 (171)
+..++..++-|+...- ..-.-+|+|++
T Consensus 203 kRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 203 KRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred ccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 3345555665554221 11235666654
No 283
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.14 E-value=4 Score=35.27 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=35.9
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
...+||-+|+|+ |.++...++.....+|+.+|++++-|+.|++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 458999999997 5556666676677899999999999999986
No 284
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=79.95 E-value=3.1 Score=35.04 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=28.8
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHH
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK 129 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~ 129 (171)
.-...+|||+|||+|.-.......+ ...+...|.+.+.+.
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR 153 (282)
T ss_pred EecCceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence 3456799999999998776665422 257778888777663
No 285
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.41 E-value=8.1 Score=30.04 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=33.4
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
.+..+.+|+|.|.|.+-..-.+.+ ...-+|+++.+-.+..++
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysr 112 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSR 112 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHH
Confidence 455899999999999877666543 457889999998887765
No 286
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=75.53 E-value=35 Score=28.77 Aligned_cols=61 Identities=25% Similarity=0.292 Sum_probs=41.6
Q ss_pred CCeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC
Q 030823 92 FPTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~----~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e 153 (171)
..+.+|+|+|+..=++.|. +++....++.+|+|...|........ ..-+++++.-+++|.+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~-~~y~~l~v~~l~~~~~ 143 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAIL-REYPGLEVNALCGDYE 143 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHH-HhCCCCeEeehhhhHH
Confidence 5789999999987666654 44555799999999999976433221 0124556666777654
No 287
>PTZ00357 methyltransferase; Provisional
Probab=75.50 E-value=21 Score=34.25 Aligned_cols=73 Identities=7% Similarity=-0.007 Sum_probs=43.2
Q ss_pred eEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--------CceeEEEccCCCCCCCC--
Q 030823 94 TALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--------IETCFVVGDEEFLPLKE-- 159 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--------~~~~~~~~D~e~LPf~~-- 159 (171)
.|+-+|+|-|-+.....+ .+..-+|++|+-.+.-.........+ ...+ ..++.+..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N-~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAN-DPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhc-ccccccccccCCCeEEEEeCccccccccccc
Confidence 589999999977554432 22223899999985422111111000 0122 23677889988875332
Q ss_pred ---------CccceEEE
Q 030823 160 ---------RYACRFFV 167 (171)
Q Consensus 160 ---------~sfDlV~s 167 (171)
+.+|+|||
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 36999997
No 288
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=75.36 E-value=4.9 Score=34.39 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=57.9
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh--hccCCCceeEEEccCCCC--CCCCCccceE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD--AHNDNIETCFVVGDEEFL--PLKERYACRF 165 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~--~~~~~~~~~~~~~D~e~L--Pf~~~sfDlV 165 (171)
..+.++|-||.|.|-+.+.......++.+..+|+.+..++..++-... ..-.+.++....||...+ ..+.+.||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 356889999999999988887666788999999999888887652211 112344566778886544 2457999999
Q ss_pred EEec
Q 030823 166 FVLA 169 (171)
Q Consensus 166 ~s~~ 169 (171)
+.-+
T Consensus 200 i~ds 203 (337)
T KOG1562|consen 200 ITDS 203 (337)
T ss_pred EEec
Confidence 8643
No 289
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=74.66 E-value=7.4 Score=29.44 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=33.0
Q ss_pred EEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC--CCCCccceEEEe
Q 030823 117 KLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP--LKERYACRFFVL 168 (171)
Q Consensus 117 ~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LP--f~~~sfDlV~s~ 168 (171)
+|+++|+-++.++..+++... .+. ++.++..+.|.+. .+++.+|+|+-|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~---~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN 53 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEE---AGLEDRVTLILDSHENLDEYIPEGPVDAAIFN 53 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHH---TT-GSGEEEEES-GGGGGGT--S--EEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHh---cCCCCcEEEEECCHHHHHhhCccCCcCEEEEE
Confidence 689999999999999887642 222 5888888888776 234589998865
No 290
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=73.81 E-value=8.4 Score=32.26 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=33.6
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~ 154 (171)
....||||||-- ++-+...+..+..+|+-+|..+-.+..++..... .+...+.++.+|...
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~--~~~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD--NPRGRTAYVQADLRD 132 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT---TTSEEEEEE--TT-
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC--CCCccEEEEeCCCCC
Confidence 467899999954 4333333334678999999999999988775421 122236778887653
No 291
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.01 E-value=12 Score=32.91 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=39.6
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEE---EeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIM---MDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP 156 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~g---vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP 156 (171)
....++|||-|.++..+..-.+.+.++. +|-+..-+...+... +.....+..+..|++.|-
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~---~~~~~vi~R~riDI~dLk 247 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLR---NKNSLVIKRIRIDIEDLK 247 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhh---ccCcchhheeEeeHHhcC
Confidence 5789999999999999986555566666 776554444433221 112234566777777664
No 292
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=73.00 E-value=2.8 Score=36.59 Aligned_cols=78 Identities=9% Similarity=-0.116 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CCCCccceEEEec
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKERYACRFFVLA 169 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f~~~sfDlV~s~~ 169 (171)
+-.+||.||+.+.....+.+.++..+--|+++..+.+..+.....+.....+...+..+|.-..+ +..+.|+++.+.+
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 45799999999999999998777778889999999999886543211112233445556654444 3345566555443
No 293
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.73 E-value=9 Score=32.40 Aligned_cols=65 Identities=11% Similarity=-0.048 Sum_probs=44.3
Q ss_pred EEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC-CCccceEEEe
Q 030823 95 ALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ERYACRFFVL 168 (171)
Q Consensus 95 vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~-~~sfDlV~s~ 168 (171)
|+|+=||.|-+...|.+.+ ...+.++|+++...+.-+.. .++ ..+.+|...+... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N-----~~~---~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEAN-----FGN---KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHh-----CCC---CCCccChhhhhhhhCCCcCEEEec
Confidence 5899999999999998754 56778999999888776542 122 2345676665421 1257888753
No 294
>PRK08267 short chain dehydrogenase; Provisional
Probab=70.73 E-value=26 Score=27.76 Aligned_cols=68 Identities=12% Similarity=-0.074 Sum_probs=41.3
Q ss_pred eEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC------
Q 030823 94 TALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK------ 158 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~----L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~------ 158 (171)
++|-.|++. .++.. |.+. ..+|+.++.+++-++...+.. .+.++.++.+|..... +.
T Consensus 3 ~vlItGasg-~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 74 (260)
T PRK08267 3 SIFITGAAS-GIGRATALLFAAE--GWRVGAYDINEAGLAALAAEL-----GAGNAWTGALDVTDRAAWDAALADFAAAT 74 (260)
T ss_pred EEEEeCCCc-hHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHh-----cCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 578888554 44444 4443 368999999887776654321 2334666777765432 11
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
.+.+|.|+.++
T Consensus 75 ~~~id~vi~~a 85 (260)
T PRK08267 75 GGRLDVLFNNA 85 (260)
T ss_pred CCCCCEEEECC
Confidence 35689988876
No 295
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.43 E-value=23 Score=27.61 Aligned_cols=74 Identities=12% Similarity=-0.055 Sum_probs=40.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----C
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----E 159 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~ 159 (171)
..++|-.|++.| ++..+.+.. ...+|+.+|.+++-+....+... ..+.++.++..|..... +. -
T Consensus 5 ~~~~lItG~~g~-iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 5 DKVIVITGGAQG-LGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECG---ALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 367888886444 444443211 23589999998876655443221 12334555666653321 00 1
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|.|+.++
T Consensus 81 ~~id~vi~~a 90 (253)
T PRK08217 81 GQLNGLINNA 90 (253)
T ss_pred CCCCEEEECC
Confidence 4678888775
No 296
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=69.74 E-value=12 Score=32.76 Aligned_cols=40 Identities=13% Similarity=0.011 Sum_probs=32.0
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a 131 (171)
.+.++||-|..|..+....|.. ..++|++||+++.-+...
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~--~P~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLA--GPKRIHAVDLNPAQNALL 73 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhc--CCceEEEEeCCHHHHHHH
Confidence 4568999998888888877776 348999999999776654
No 297
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=69.21 E-value=56 Score=28.38 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccce
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERYACR 164 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~~~sfDl 164 (171)
...+++-+|+ |.++..+.+.. ....|+.+|.+++.++..++. ......+.||....- ..-+.+|.
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~-------~~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE-------LPNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------CCCCeEEECCCCCHHHHHhcCCccCCE
Confidence 3477888877 66666664321 235899999999998887642 112445777764331 23357787
Q ss_pred EEEe
Q 030823 165 FFVL 168 (171)
Q Consensus 165 V~s~ 168 (171)
|++.
T Consensus 301 vi~~ 304 (453)
T PRK09496 301 FIAL 304 (453)
T ss_pred EEEC
Confidence 7764
No 298
>PRK07890 short chain dehydrogenase; Provisional
Probab=68.32 E-value=29 Score=27.26 Aligned_cols=72 Identities=8% Similarity=-0.107 Sum_probs=41.1
Q ss_pred CCeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC----
Q 030823 92 FPTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~----L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~---- 158 (171)
..++|-.|++.| ++.. |.++ ..+|+++|.+++-++...+... ..+.++.++.+|..... +.
T Consensus 5 ~k~vlItGa~~~-IG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 5 GKVVVVSGVGPG-LGRTLAVRAARA--GADVVLAARTAERLDEVAAEID---DLGRRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred CCEEEEECCCCc-HHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHH---HhCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 357888886544 4444 4443 3689999998876655433221 12334556666654321 00
Q ss_pred -CCccceEEEec
Q 030823 159 -ERYACRFFVLA 169 (171)
Q Consensus 159 -~~sfDlV~s~~ 169 (171)
-+.+|.|+.++
T Consensus 79 ~~g~~d~vi~~a 90 (258)
T PRK07890 79 RFGRVDALVNNA 90 (258)
T ss_pred HcCCccEEEECC
Confidence 14678888876
No 299
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=68.15 E-value=5.1 Score=37.53 Aligned_cols=35 Identities=9% Similarity=-0.128 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCH
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSY 125 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~ 125 (171)
+...||||||.+|.+...-.+..+ ..-|+|||+-|
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 446799999999999887765443 45889999865
No 300
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=68.04 E-value=39 Score=26.02 Aligned_cols=77 Identities=18% Similarity=0.083 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-
Q 030823 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE- 153 (171)
Q Consensus 76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e- 153 (171)
+.++.|++.+........+|+.|||.|-.. .|.+ ..+..+++.+|.....-.-. .+ .|+.-|..
T Consensus 10 ~T~~~l~~~l~~~~~~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~~~-----------~~-~F~fyD~~~ 75 (162)
T PF10237_consen 10 ETAEFLARELLDGALDDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQFG-----------GD-EFVFYDYNE 75 (162)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHhcC-----------Cc-ceEECCCCC
Confidence 444555555554445668999999998544 4443 23456899999976443311 12 34554432
Q ss_pred --CCC--CCCCccceEEE
Q 030823 154 --FLP--LKERYACRFFV 167 (171)
Q Consensus 154 --~LP--f~~~sfDlV~s 167 (171)
.+| + .++||+|+.
T Consensus 76 p~~~~~~l-~~~~d~vv~ 92 (162)
T PF10237_consen 76 PEELPEEL-KGKFDVVVI 92 (162)
T ss_pred hhhhhhhc-CCCceEEEE
Confidence 344 3 579999885
No 301
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=68.03 E-value=17 Score=30.42 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
+.++||-.|||. |.++..+++.....+|+++|.+++-++.+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 467888888742 2333444544344579999999999988875
No 302
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=66.90 E-value=31 Score=30.47 Aligned_cols=69 Identities=12% Similarity=-0.030 Sum_probs=44.7
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC---CCCccceE
Q 030823 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KERYACRF 165 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf---~~~sfDlV 165 (171)
.+||-||| |.++... +++ ...+|+..|-|.+-++++.+. .+.++.....|+..-+- -=..+|+|
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~------~~~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAEL------IGGKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhh------ccccceeEEecccChHHHHHHHhcCCEE
Confidence 46899999 4454443 343 337999999999988888652 12256667777665531 01344999
Q ss_pred EEecc
Q 030823 166 FVLAL 170 (171)
Q Consensus 166 ~s~~~ 170 (171)
++.+.
T Consensus 73 In~~p 77 (389)
T COG1748 73 INAAP 77 (389)
T ss_pred EEeCC
Confidence 98763
No 303
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=66.53 E-value=31 Score=28.17 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=31.2
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+..+||..|+|. |..+..+++... .+|++++.+++..+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHH
Confidence 3457888888763 666666665433 569999999999888754
No 304
>PRK06194 hypothetical protein; Provisional
Probab=66.40 E-value=24 Score=28.43 Aligned_cols=73 Identities=18% Similarity=0.037 Sum_probs=41.6
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----CC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----ER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~~ 160 (171)
.++|-.|+ +|.++..+.+.. ...+|+.+|.+++.++...+... ..+.++.++.+|..... +. -+
T Consensus 7 k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 7 KVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELR---AQGAEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 57887874 454554443211 23689999998776665543221 12345666777765321 00 13
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
.+|+|+.++
T Consensus 83 ~id~vi~~A 91 (287)
T PRK06194 83 AVHLLFNNA 91 (287)
T ss_pred CCCEEEECC
Confidence 579988876
No 305
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=65.69 E-value=29 Score=25.21 Aligned_cols=72 Identities=19% Similarity=0.074 Sum_probs=43.2
Q ss_pred eEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCC--HHHHHHHHHhhhhhccCCCceeEEEccCCCC----------CCC
Q 030823 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTS--YDMLKLCKDAQQDAHNDNIETCFVVGDEEFL----------PLK 158 (171)
Q Consensus 94 ~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S--~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L----------Pf~ 158 (171)
++|-.|+++| .+++.|.+. ....|+.+..+ .+.++...+... ..+.++.++..|.... .-.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELK---APGAKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHH---HTTSEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhc-CceEEEEeeeccccccccccccccc---ccccccccccccccccccccccccccccc
Confidence 5788887766 334445554 34588888888 555554433221 2445677777775543 112
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
.+.+|+++.++
T Consensus 78 ~~~ld~li~~a 88 (167)
T PF00106_consen 78 FGPLDILINNA 88 (167)
T ss_dssp HSSESEEEEEC
T ss_pred ccccccccccc
Confidence 46788888775
No 306
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=65.27 E-value=26 Score=27.85 Aligned_cols=70 Identities=14% Similarity=-0.026 Sum_probs=37.3
Q ss_pred eEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CCC
Q 030823 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KER 160 (171)
Q Consensus 94 ~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~~~ 160 (171)
++|-.|++.| .+...|.+. ..+|+.++.+++-++...+... .. .++.++.+|..... + .-+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~---~~-~~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKK--GARVVISSRNEENLEKALKELK---EY-GEVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHH---hc-CCceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 5777786554 223334443 3578888888776665543321 11 13445556654321 0 114
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
.+|+++.++
T Consensus 76 ~id~li~na 84 (259)
T PRK08340 76 GIDALVWNA 84 (259)
T ss_pred CCCEEEECC
Confidence 678877764
No 307
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=64.41 E-value=31 Score=28.47 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
+..+||..|||. |..+..+++.....++++++.+++..+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 567888888765 5566556654344479999999998887654
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=63.88 E-value=16 Score=25.37 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=37.8
Q ss_pred CCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEEEe
Q 030823 100 GSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERYACRFFVL 168 (171)
Q Consensus 100 cGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~~~sfDlV~s~ 168 (171)
||.|.++..+.+.. ....|+.+|.+++-++.+++ .+ ..++.||..... ..-+..|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------EG--VEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------TT--SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------cc--cccccccchhhhHHhhcCccccCEEEEc
Confidence 56667777665311 22489999999999988875 33 446778876542 233567777665
No 309
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=63.35 E-value=24 Score=29.38 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=29.3
Q ss_pred CCeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 92 FPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 92 ~~~vLDlGcGt--G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
+.+|.-||+|. +.++..|...+...+|+++|.+++-++.+.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~ 49 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE 49 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Confidence 46789998875 3455555554333489999999988777653
No 310
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=62.71 E-value=22 Score=27.97 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=23.8
Q ss_pred CCeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030823 92 FPTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 92 ~~~vLDlGcGt-G-~l~~~L~~~~~~~~v~gvD~S 124 (171)
..+||-+|||. | .++..|... .+++++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 37899999994 4 456666654 56899999976
No 311
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=62.11 E-value=23 Score=28.53 Aligned_cols=61 Identities=16% Similarity=0.022 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC
Q 030823 91 TFPTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~----~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~ 154 (171)
++..|+++|.-.|.-+..++ ..++.++|+|+|+.-.-.++..-.. +.-...++++.||.-.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~---hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES---HPMSPRITFIQGDSID 96 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-------TTEEEEES-SSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh---ccccCceEEEECCCCC
Confidence 45899999999886655443 2235689999999543333321100 0112357788887643
No 312
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=61.78 E-value=36 Score=30.64 Aligned_cols=64 Identities=8% Similarity=-0.030 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc---C-CCcEEEEEeCCHHHHHHHHH
Q 030823 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR---G-GIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~---~-~~~~v~gvD~S~~mL~~a~~ 133 (171)
.-++..+|+..+...+.....+...+.|.-||+|.+....... + ....++|-+....|...+..
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~m 263 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRM 263 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHH
Confidence 4566667776665433322234468999999999987654321 1 23478999999999988864
No 313
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=61.05 E-value=3.1 Score=29.74 Aligned_cols=15 Identities=7% Similarity=0.011 Sum_probs=11.6
Q ss_pred EEEEcCCCcHHHHHH
Q 030823 95 ALCLGGSLEAVRRLL 109 (171)
Q Consensus 95 vLDlGcGtG~l~~~L 109 (171)
-+|||||.|+.-..-
T Consensus 6 NIDIGcG~GNTmda~ 20 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAA 20 (124)
T ss_pred ccccccCCCcchhhh
Confidence 489999999875544
No 314
>PRK06139 short chain dehydrogenase; Provisional
Probab=60.62 E-value=38 Score=28.64 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=42.6
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----C------C
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----L------K 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f------~ 158 (171)
..++|-.|++.| .+...|.+. ..+|+.++-+++-++...+.+. ..+.++.++..|..... + .
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~--G~~Vvl~~R~~~~l~~~~~~~~---~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARR--GARLVLAARDEEALQAVAEECR---ALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 367888887555 233444443 3689999999887766544321 13334555556654321 0 0
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
.+.+|+++.|+
T Consensus 82 ~g~iD~lVnnA 92 (330)
T PRK06139 82 GGRIDVWVNNV 92 (330)
T ss_pred cCCCCEEEECC
Confidence 15689998876
No 315
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=60.56 E-value=32 Score=29.17 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=46.9
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC---CCCccceEEEe
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KERYACRFFVL 168 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf---~~~sfDlV~s~ 168 (171)
.+++|+=||.|-+...+...+ ..-+.++|+.+..++.-+.. .+. ...+..|...+.- +...+|+|+..
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n-----~~~--~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKAN-----FPH--GDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHh-----CCC--CceeechHhhcChhhccccCCCEEEeC
Confidence 579999999999998888755 67889999999888876532 121 3335555554432 11278888753
No 316
>PRK08339 short chain dehydrogenase; Provisional
Probab=60.39 E-value=55 Score=26.22 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=42.8
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C----CC
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----KE 159 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f----~~ 159 (171)
..++|-.|++.| .+...|.+. ..+|+.+|.+++-++...+.... ..+.++.++.+|..... + .-
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARA--GADVILLSRNEENLKKAREKIKS--ESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHh--hcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 357888887766 334445553 36899999988776655432210 11334556666655431 1 11
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|+++.++
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 4688888775
No 317
>PRK07814 short chain dehydrogenase; Provisional
Probab=60.24 E-value=50 Score=26.29 Aligned_cols=72 Identities=7% Similarity=-0.068 Sum_probs=41.5
Q ss_pred CCeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-----C----
Q 030823 92 FPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-----K---- 158 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf-----~---- 158 (171)
..++|-.|+ +|.++..+ .++ ..+|++++.+++-++...+... ..+..+.++.+|.....- .
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEA--GADVLIAARTESQLDEVAEQIR---AAGRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467888885 55455544 443 3699999998766555433221 122345556666544321 0
Q ss_pred -CCccceEEEec
Q 030823 159 -ERYACRFFVLA 169 (171)
Q Consensus 159 -~~sfDlV~s~~ 169 (171)
-+.+|+|+.++
T Consensus 84 ~~~~id~vi~~A 95 (263)
T PRK07814 84 AFGRLDIVVNNV 95 (263)
T ss_pred HcCCCCEEEECC
Confidence 13688888875
No 318
>PRK05854 short chain dehydrogenase; Provisional
Probab=60.19 E-value=73 Score=26.41 Aligned_cols=75 Identities=15% Similarity=-0.016 Sum_probs=42.3
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----------CC
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----------f~ 158 (171)
..++|-.|++.| .++..|.+. ..+|+.++-+++-++.+.+.... ...+.++.++.+|...+. -.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~--G~~Vil~~R~~~~~~~~~~~l~~-~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAA--GAEVILPVRNRAKGEAAVAAIRT-AVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 357788887665 233444443 36888888887665554332210 112334666777765432 11
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
.+..|+++.||
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 24688888776
No 319
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=59.90 E-value=21 Score=32.40 Aligned_cols=79 Identities=15% Similarity=-0.012 Sum_probs=47.7
Q ss_pred cCCCeEEEEcCCCcHHHHHH--hhcCCCcEEEEEeCCHHHHHHHHHhhhh-hccCCCceeEEEccCCCCCCCC-CccceE
Q 030823 90 KTFPTALCLGGSLEAVRRLL--RGRGGIEKLIMMDTSYDMLKLCKDAQQD-AHNDNIETCFVVGDEEFLPLKE-RYACRF 165 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L--~~~~~~~~v~gvD~S~~mL~~a~~~~~~-~~~~~~~~~~~~~D~e~LPf~~-~sfDlV 165 (171)
..++.+.|+|.|.|.-.-.+ ..+.-...+..||.|..|+........+ +....+-+.-++.-...+|... +.||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 34678889998888654433 3333457899999999999987543211 0111111111233345667544 559999
Q ss_pred EEe
Q 030823 166 FVL 168 (171)
Q Consensus 166 ~s~ 168 (171)
+++
T Consensus 279 i~a 281 (491)
T KOG2539|consen 279 ICA 281 (491)
T ss_pred Eee
Confidence 986
No 320
>PRK05867 short chain dehydrogenase; Provisional
Probab=59.43 E-value=39 Score=26.64 Aligned_cols=73 Identities=16% Similarity=-0.048 Sum_probs=41.8
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~ 158 (171)
..++|-.|++.| .+...|.+. ..+|+.++.+++-++...+... ..+.++.++.+|..... + .
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEA--GAQVAIAARHLDALEKLADEIG---TSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHH---hcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899997665 334444443 3589999998876665543221 12234455666654321 0 0
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|.++.++
T Consensus 84 ~g~id~lv~~a 94 (253)
T PRK05867 84 LGGIDIAVCNA 94 (253)
T ss_pred hCCCCEEEECC
Confidence 14688888775
No 321
>PRK07035 short chain dehydrogenase; Provisional
Probab=59.39 E-value=54 Score=25.71 Aligned_cols=73 Identities=16% Similarity=0.025 Sum_probs=39.8
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~----- 158 (171)
..++|-.|+++| .+.+.|.+. ..+|+.++.+++-++...+... ..+.+..++..|....- +.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQ--GAHVIVSSRKLDGCQAVADAIV---AAGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 357888887766 333444443 3589999988765554433221 12233445555553321 00
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|+|+.++
T Consensus 83 ~~~id~li~~a 93 (252)
T PRK07035 83 HGRLDILVNNA 93 (252)
T ss_pred cCCCCEEEECC
Confidence 13578888765
No 322
>PRK12829 short chain dehydrogenase; Provisional
Probab=59.16 E-value=50 Score=25.94 Aligned_cols=73 Identities=14% Similarity=-0.013 Sum_probs=41.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~----- 158 (171)
+..++|-.|++ |.++..+.+.. ...+|++++.+++.++...+.. ...++.++.+|..... +.
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARL-----PGAKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 34789999865 55555443211 2358999999887776543321 1123455666654332 11
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|.|+.++
T Consensus 84 ~~~~d~vi~~a 94 (264)
T PRK12829 84 FGGLDVLVNNA 94 (264)
T ss_pred hCCCCEEEECC
Confidence 13578888765
No 323
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=59.15 E-value=52 Score=23.87 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823 91 TFPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 91 ~~~~vLDlGcGt--G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
...+++-+|||. ..+...|...+ ...|+.+|.+++-.+...
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~ 60 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALA 60 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHH
Confidence 457899999863 13333344432 468999999987665543
No 324
>PRK05866 short chain dehydrogenase; Provisional
Probab=59.15 E-value=65 Score=26.45 Aligned_cols=71 Identities=15% Similarity=0.039 Sum_probs=41.4
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030823 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~ 158 (171)
.++|-.|++.| ++..+ .+. ..+|+.++.+++-++...+... ..+..+.++.+|..... + .
T Consensus 41 k~vlItGasgg-IG~~la~~La~~--G~~Vi~~~R~~~~l~~~~~~l~---~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 41 KRILLTGASSG-IGEAAAEQFARR--GATVVAVARREDLLDAVADRIT---RAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57888886554 44444 343 3689999998877665543221 12334555666654321 0 1
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+..|+|+.++
T Consensus 115 ~g~id~li~~A 125 (293)
T PRK05866 115 IGGVDILINNA 125 (293)
T ss_pred cCCCCEEEECC
Confidence 14678888875
No 325
>PRK09072 short chain dehydrogenase; Provisional
Probab=59.08 E-value=58 Score=25.80 Aligned_cols=72 Identities=17% Similarity=0.026 Sum_probs=41.2
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C----CC
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----KE 159 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f----~~ 159 (171)
..++|-.|++.| .+...|.+. ..+|++++.+++-+....... ..+.++.++.+|..... + .-
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAA--GARLLLVGRNAEKLEALAARL----PYPGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH----hcCCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 357888886654 233444443 368999999887766554321 11224556666654431 0 01
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|.|+.++
T Consensus 79 ~~id~lv~~a 88 (263)
T PRK09072 79 GGINVLINNA 88 (263)
T ss_pred CCCCEEEECC
Confidence 4578888765
No 326
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=58.78 E-value=40 Score=29.80 Aligned_cols=74 Identities=14% Similarity=-0.008 Sum_probs=42.3
Q ss_pred cccCCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHH-HHHHHhhhhhccCCCceeEEEccCCCCCCCCCccce
Q 030823 88 CRKTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDML-KLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACR 164 (171)
Q Consensus 88 i~~~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL-~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDl 164 (171)
++++.++||-.| |+|.++.+|.+.. ...+|+++|...... ...... .....+.++.+|.-.--+ ..+|.
T Consensus 116 ~~~~~mkILVTG-atGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~-----~~~~~~~~~~~Di~~~~~--~~~D~ 187 (436)
T PLN02166 116 IGRKRLRIVVTG-GAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHL-----FGNPRFELIRHDVVEPIL--LEVDQ 187 (436)
T ss_pred cccCCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhh-----ccCCceEEEECccccccc--cCCCE
Confidence 456778999998 9999988876421 235899999642111 000000 011234556666532222 35898
Q ss_pred EEEec
Q 030823 165 FFVLA 169 (171)
Q Consensus 165 V~s~~ 169 (171)
|+.+|
T Consensus 188 ViHlA 192 (436)
T PLN02166 188 IYHLA 192 (436)
T ss_pred EEECc
Confidence 88776
No 327
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=58.64 E-value=44 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCcHHHH----HHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823 92 FPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~----~L~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
..++|-.|++.| ++. .|.+. ..+|+.++.+++.++...
T Consensus 6 ~k~vlVtGas~g-IG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~ 47 (263)
T PRK06200 6 GQVALITGGGSG-IGRALVERFLAE--GARVAVLERSAEKLASLR 47 (263)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 357888886554 444 34443 358899998887766554
No 328
>PRK07063 short chain dehydrogenase; Provisional
Probab=58.48 E-value=58 Score=25.70 Aligned_cols=75 Identities=13% Similarity=-0.024 Sum_probs=42.8
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~ 158 (171)
..++|-.|++.| .+...|.+. ..+|+.+|.+++-++...+.... ...+.++.++.+|..... + .
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~--G~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFARE--GAAVALADLDAALAERAAAAIAR-DVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHh-ccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467898887655 233444443 36899999988776655433210 002334556666654331 0 0
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|.++.++
T Consensus 84 ~g~id~li~~a 94 (260)
T PRK07063 84 FGPLDVLVNNA 94 (260)
T ss_pred hCCCcEEEECC
Confidence 14688888775
No 329
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=58.08 E-value=40 Score=28.59 Aligned_cols=73 Identities=22% Similarity=0.180 Sum_probs=39.6
Q ss_pred EEEcCCCcHHHHHHhh---cCCCcEEEEEeCCHHHHHHHHHhhhh-hccCCCc--eeEEEccCCCC-----CCCCCccce
Q 030823 96 LCLGGSLEAVRRLLRG---RGGIEKLIMMDTSYDMLKLCKDAQQD-AHNDNIE--TCFVVGDEEFL-----PLKERYACR 164 (171)
Q Consensus 96 LDlGcGtG~l~~~L~~---~~~~~~v~gvD~S~~mL~~a~~~~~~-~~~~~~~--~~~~~~D~e~L-----Pf~~~sfDl 164 (171)
|--| |+|.++..|.+ .....+++.+|.++.-+-.-++.... .....+. +.++.+|...- -|.....|+
T Consensus 2 LVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 2 LVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred EEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 3344 88989888864 23447999999999888777654310 0012222 23356776543 266678899
Q ss_pred EEEec
Q 030823 165 FFVLA 169 (171)
Q Consensus 165 V~s~~ 169 (171)
|+..|
T Consensus 81 VfHaA 85 (293)
T PF02719_consen 81 VFHAA 85 (293)
T ss_dssp EEE--
T ss_pred EEECh
Confidence 98765
No 330
>PRK07454 short chain dehydrogenase; Provisional
Probab=58.03 E-value=63 Score=25.13 Aligned_cols=73 Identities=14% Similarity=0.004 Sum_probs=41.5
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----CC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----ER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~~ 160 (171)
.++|-.|+ +|.++..+.+.. ...+|+.++.+++-+....+... ..+.++.++.+|..... +. -+
T Consensus 7 k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 7 PRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELR---STGVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56888885 555555544311 23589999998765544333221 12334666777765432 11 13
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
..|.|+.++
T Consensus 83 ~id~lv~~a 91 (241)
T PRK07454 83 CPDVLINNA 91 (241)
T ss_pred CCCEEEECC
Confidence 578888765
No 331
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=57.39 E-value=7.5 Score=35.17 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~ 134 (171)
....+|-+|-|.|.+...|.-..+..+++++++.|+|++.|.+-
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~ 338 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQY 338 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhh
Confidence 34679999999999998887656778999999999999998763
No 332
>PLN02427 UDP-apiose/xylose synthase
Probab=57.26 E-value=31 Score=29.39 Aligned_cols=75 Identities=16% Similarity=-0.008 Sum_probs=43.1
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--C-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCccceE
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--G-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERYACRF 165 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f~--~~sfDlV 165 (171)
.++||-.| |+|.++.+|.+.. . ..+|+++|.+.+-+........ ......+.++.+|..... +. -..+|.|
T Consensus 14 ~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~--~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 14 PLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDT--VPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred CcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcccc--ccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 46799887 8998888876422 1 2589999976544332211000 000124677888875432 10 1247988
Q ss_pred EEec
Q 030823 166 FVLA 169 (171)
Q Consensus 166 ~s~~ 169 (171)
+.+|
T Consensus 91 iHlA 94 (386)
T PLN02427 91 INLA 94 (386)
T ss_pred EEcc
Confidence 8766
No 333
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=57.24 E-value=20 Score=31.52 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=34.6
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~ 134 (171)
...|||.=+|||.=+..++...+..+|+.-|+||+.++..++.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~N 95 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKEN 95 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHH
Confidence 4689999999998877776433334899999999999998763
No 334
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=57.12 E-value=22 Score=31.49 Aligned_cols=42 Identities=12% Similarity=0.081 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHH
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~ 133 (171)
+.+|||+|.|.|...-.+..-.| ...++.++.|+..-+....
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t 156 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT 156 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH
Confidence 46799999999977666543322 3578888888877666544
No 335
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=57.10 E-value=62 Score=29.58 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=33.1
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+..+|+-+|||. |..+...++... ..|+++|.+++-++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH
Confidence 4678999999997 445555555433 489999999999999875
No 336
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=56.96 E-value=14 Score=31.97 Aligned_cols=39 Identities=28% Similarity=0.084 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a 131 (171)
...+||--|||.|.++..|+..+ -..-|-+.|.-|+-..
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G--~~~qGNEfSy~Mli~S 188 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLG--FKCQGNEFSYFMLICS 188 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhc--ccccccHHHHHHHHHH
Confidence 35789999999999999998754 4666778888887553
No 337
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=56.83 E-value=65 Score=26.33 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=29.4
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+..+||.+|+|. |.....+++......++.++.+++..+.+++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 202 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK 202 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 3557899998642 4455555554443458999999998887753
No 338
>PRK05650 short chain dehydrogenase; Provisional
Probab=56.83 E-value=45 Score=26.63 Aligned_cols=70 Identities=10% Similarity=-0.065 Sum_probs=37.7
Q ss_pred eEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CC
Q 030823 94 TALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~~ 159 (171)
++|-.|+.+ .++..+ .+. ..+|+.++.+++-++...+... ..+.++.++.+|..... + .-
T Consensus 2 ~vlVtGasg-gIG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 75 (270)
T PRK05650 2 RVMITGAAS-GLGRAIALRWARE--GWRLALADVNEEGGEETLKLLR---EAGGDGFYQRCDVRDYSQLTALAQACEEKW 75 (270)
T ss_pred EEEEecCCC-hHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 577777544 444444 443 3588888888766554432211 12334555666654321 0 01
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|.|+.++
T Consensus 76 ~~id~lI~~a 85 (270)
T PRK05650 76 GGIDVIVNNA 85 (270)
T ss_pred CCCCEEEECC
Confidence 4678888775
No 339
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.04 E-value=64 Score=26.20 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=41.9
Q ss_pred ccCCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030823 89 RKTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFV 167 (171)
Q Consensus 89 ~~~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s 167 (171)
...+..+|-+|.= ||.....+.. ...+|+.+|+.|.|-...+ .+ +.|..+ +-+.++.+|+|+-
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls--~~~~vtv~Di~p~~r~~lp--------~~--v~Fr~~----~~~~~G~~DlivD 105 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLS--KADKVTVVDIHPFMRGFLP--------NN--VKFRNL----LKFIRGEVDLIVD 105 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhc--ccceEEEecCCHHHHhcCC--------CC--ccHhhh----cCCCCCceeEEEe
Confidence 4567899999874 7777666654 3479999999998876542 22 222222 4455677888874
No 340
>PLN02206 UDP-glucuronate decarboxylase
Probab=55.82 E-value=48 Score=29.39 Aligned_cols=73 Identities=16% Similarity=0.032 Sum_probs=41.5
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHH-HHHHhhhhhccCCCceeEEEccCCCCCCCCCccceE
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLK-LCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRF 165 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~-~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV 165 (171)
+++.++||-.| |+|.++.+|.+.. ...+|+++|....... ..... .....+.++.+|...--+ ..+|.|
T Consensus 116 ~~~~~kILVTG-atGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~-----~~~~~~~~i~~D~~~~~l--~~~D~V 187 (442)
T PLN02206 116 KRKGLRVVVTG-GAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHH-----FSNPNFELIRHDVVEPIL--LEVDQI 187 (442)
T ss_pred ccCCCEEEEEC-cccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhh-----ccCCceEEEECCccChhh--cCCCEE
Confidence 44668899888 8999888876421 2358999985321110 00000 112235566677533222 357998
Q ss_pred EEec
Q 030823 166 FVLA 169 (171)
Q Consensus 166 ~s~~ 169 (171)
+.+|
T Consensus 188 iHlA 191 (442)
T PLN02206 188 YHLA 191 (442)
T ss_pred EEee
Confidence 8776
No 341
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=55.65 E-value=62 Score=25.37 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=40.5
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030823 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~ 158 (171)
.++|-.|+ +|.++..+ .+. ..+|+.++.+++.++...+... ..+.++.++.+|..... + .
T Consensus 8 ~~vlItGa-sg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 8 KTAVVTGA-ASGIGKEIALELARA--GAAVAIADLNQDGANAVADEIN---KAGGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CEEEEECC-CChHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHH---hcCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56787775 45455444 443 3589999998876665543321 12334556677765432 0 1
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
.+..|.|+.++
T Consensus 82 ~~~~d~vi~~a 92 (262)
T PRK13394 82 FGSVDILVSNA 92 (262)
T ss_pred cCCCCEEEECC
Confidence 14578887765
No 342
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=55.32 E-value=26 Score=28.45 Aligned_cols=37 Identities=16% Similarity=-0.021 Sum_probs=28.4
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCH
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSY 125 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~ 125 (171)
.++..+|+|+=.|.|.+++.|... ++.+.|++.-+.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 357789999999999999999762 3556777765543
No 343
>PRK07677 short chain dehydrogenase; Provisional
Probab=55.04 E-value=48 Score=26.07 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=22.3
Q ss_pred CeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 93 ~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
.++|-.|++.| .+...|.+. ..+|++++.+++.++...
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~--G~~Vi~~~r~~~~~~~~~ 42 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEE--GANVVITGRTKEKLEEAK 42 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 35777776555 233334443 357888888776665543
No 344
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=55.01 E-value=66 Score=25.32 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=37.8
Q ss_pred CeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CC
Q 030823 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (171)
Q Consensus 93 ~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~~ 159 (171)
.++|-.|++.| .+.+.|.+. ..+|+.+|.++.......+ . ...+.++.++.+|..... + .-
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~-~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAE--GARVVLVDRSELVHEVAAE-L---RAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCchHHHHHHHH-H---HhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 57888886554 233444443 3588888887543222221 1 012334555666655421 0 01
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|.++.++
T Consensus 83 ~~id~lv~nA 92 (260)
T PRK12823 83 GRIDVLINNV 92 (260)
T ss_pred CCCeEEEECC
Confidence 4688888776
No 345
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=54.48 E-value=80 Score=24.86 Aligned_cols=74 Identities=11% Similarity=0.015 Sum_probs=43.3
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-C---------CC
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-L---------KE 159 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f---------~~ 159 (171)
..++|-.| |+|.++..+.+.. ...+|+.++.+.+-++...+... ..+.++.++.+|..... + ..
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~---~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE---ALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46788888 5565665554321 23589999998876665543221 12334556677765431 1 01
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|.|+.++
T Consensus 88 ~~id~vi~~a 97 (259)
T PRK08213 88 GHVDILVNNA 97 (259)
T ss_pred CCCCEEEECC
Confidence 4678888875
No 346
>PRK07109 short chain dehydrogenase; Provisional
Probab=54.12 E-value=62 Score=27.22 Aligned_cols=71 Identities=17% Similarity=0.053 Sum_probs=41.8
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030823 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~ 158 (171)
.++|-.|++.| ++..+ .+. ..+|+.++.+++-++...+... ..+.++.++.+|..... + .
T Consensus 9 k~vlITGas~g-IG~~la~~la~~--G~~Vvl~~R~~~~l~~~~~~l~---~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 9 QVVVITGASAG-VGRATARAFARR--GAKVVLLARGEEGLEALAAEIR---AAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH---HcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 57888886554 44444 443 3689999998877665543321 23445666667654321 0 0
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|+++.++
T Consensus 83 ~g~iD~lInnA 93 (334)
T PRK07109 83 LGPIDTWVNNA 93 (334)
T ss_pred CCCCCEEEECC
Confidence 14688888775
No 347
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=54.04 E-value=64 Score=26.38 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=30.1
Q ss_pred cCCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+..+||-+||| .|..+..+++.. ..+|+.++.+++.++..++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK 204 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 345788889886 555555555533 3489999999998888753
No 348
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=53.92 E-value=10 Score=32.44 Aligned_cols=80 Identities=13% Similarity=-0.177 Sum_probs=36.2
Q ss_pred cCCCeEEEEcCCCcHHHHHHhh--------cC--------CCcEEEEEeCCHHHHHH-HHHhhhh---h-ccCCCceeEE
Q 030823 90 KTFPTALCLGGSLEAVRRLLRG--------RG--------GIEKLIMMDTSYDMLKL-CKDAQQD---A-HNDNIETCFV 148 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~--------~~--------~~~~v~gvD~S~~mL~~-a~~~~~~---~-~~~~~~~~~~ 148 (171)
...-+|+|+||.+|..+..+.. .. +.=+|+..|+-..=-+. .+..... . ..+..-+.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 3446899999999987755532 11 11288888974321111 1100000 0 0011112223
Q ss_pred EccCCCCCCCCCccceEEEec
Q 030823 149 VGDEEFLPLKERYACRFFVLA 169 (171)
Q Consensus 149 ~~D~e~LPf~~~sfDlV~s~~ 169 (171)
-+....--||++|.|+++|+.
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~ 115 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSY 115 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES
T ss_pred CchhhhccCCCCceEEEEEec
Confidence 355555568999999999874
No 349
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=53.41 E-value=41 Score=29.11 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=22.8
Q ss_pred CeEEEEcCCC-cH-HHHHHhhcCCCcEEEEEeCC
Q 030823 93 PTALCLGGSL-EA-VRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 93 ~~vLDlGcGt-G~-l~~~L~~~~~~~~v~gvD~S 124 (171)
.+||-+|||. |. ++..|... .+++++.+|..
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~-Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAA-GVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 6799999984 43 45556554 57899999986
No 350
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=53.38 E-value=30 Score=28.93 Aligned_cols=68 Identities=19% Similarity=0.074 Sum_probs=40.4
Q ss_pred CeEEEEcCCCcHHHHHHhhcC---CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC-C--CCCccceE
Q 030823 93 PTALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-L--KERYACRF 165 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~---~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LP-f--~~~sfDlV 165 (171)
++||-.| |+|.++..|.+.. ...+|+++|.+...+.... ....+.++.+|.. ... + .-..+|.|
T Consensus 2 ~~ilVtG-atGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~~~~~~d~V 72 (347)
T PRK11908 2 KKVLILG-VNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLV--------NHPRMHFFEGDITINKEWIEYHVKKCDVI 72 (347)
T ss_pred cEEEEEC-CCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhc--------cCCCeEEEeCCCCCCHHHHHHHHcCCCEE
Confidence 3578777 7898888886432 1258999998765433221 1224667788874 221 1 01247888
Q ss_pred EEec
Q 030823 166 FVLA 169 (171)
Q Consensus 166 ~s~~ 169 (171)
+.++
T Consensus 73 iH~a 76 (347)
T PRK11908 73 LPLV 76 (347)
T ss_pred EECc
Confidence 8643
No 351
>PRK07024 short chain dehydrogenase; Provisional
Probab=53.28 E-value=93 Score=24.56 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=39.9
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-C---------CCC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-L---------KER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f---------~~~ 160 (171)
.++|-.|+.+ .++..+.+.. ...+|+.+|..++.+....+... ..+ ++.++.+|..... . .-+
T Consensus 3 ~~vlItGas~-gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 3 LKVFITGASS-GIGQALAREYARQGATLGLVARRTDALQAFAARLP---KAA-RVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CEEEEEcCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc---cCC-eeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4677788644 4444443211 23589999988877765543211 111 4566667665421 0 113
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
.+|+++.++
T Consensus 78 ~id~lv~~a 86 (257)
T PRK07024 78 LPDVVIANA 86 (257)
T ss_pred CCCEEEECC
Confidence 478888775
No 352
>PRK08703 short chain dehydrogenase; Provisional
Probab=52.72 E-value=1.1e+02 Score=23.78 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=24.2
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHH
Q 030823 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
.++|-.||+.| ++..+ .+. ..+|+.++.+++-++...
T Consensus 7 k~vlItG~sgg-iG~~la~~l~~~--g~~V~~~~r~~~~~~~~~ 47 (239)
T PRK08703 7 KTILVTGASQG-LGEQVAKAYAAA--GATVILVARHQKKLEKVY 47 (239)
T ss_pred CEEEEECCCCc-HHHHHHHHHHHc--CCEEEEEeCChHHHHHHH
Confidence 57899996544 44444 443 358999999887665543
No 353
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=52.03 E-value=23 Score=30.96 Aligned_cols=70 Identities=14% Similarity=0.041 Sum_probs=44.3
Q ss_pred CeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc---eeEEEccCCCCC-CCCCccceE
Q 030823 93 PTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE---TCFVVGDEEFLP-LKERYACRF 165 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~---~~~~~~D~e~LP-f~~~sfDlV 165 (171)
-++||.=+|+|.=+..++.. ....+|+..|+|++.++..++..+ ..++. +.....|+..+- ...+.||+|
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~---~N~~~~~~~~v~~~DAn~ll~~~~~~fD~I 125 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLE---LNGLEDERIEVSNMDANVLLYSRQERFDVI 125 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHH---HCT-SGCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHh---hccccCceEEEehhhHHHHhhhccccCCEE
Confidence 58999999999887777643 456799999999999988876432 22322 334445554432 256778876
No 354
>PRK09291 short chain dehydrogenase; Provisional
Probab=51.87 E-value=99 Score=24.13 Aligned_cols=73 Identities=12% Similarity=-0.098 Sum_probs=39.4
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEE
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERYACRFF 166 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~~~sfDlV~ 166 (171)
.++|-.|++ |.++..+.+.. ...+|++++-+++-+....+... ..+..+.++.+|..... ......|.|+
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAA---RRGLALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 368888864 44544443211 23688888887655544332211 12334556666654321 1124688888
Q ss_pred Eec
Q 030823 167 VLA 169 (171)
Q Consensus 167 s~~ 169 (171)
.++
T Consensus 79 ~~a 81 (257)
T PRK09291 79 NNA 81 (257)
T ss_pred ECC
Confidence 875
No 355
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=51.82 E-value=81 Score=25.17 Aligned_cols=72 Identities=14% Similarity=-0.063 Sum_probs=40.1
Q ss_pred CCeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC----
Q 030823 92 FPTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~----L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~---- 158 (171)
..++|-.|++.| ++.. |.+. ..+|+.+|.+++.++...+... ..+.++.++.+|..... +.
T Consensus 10 ~k~vlVtGas~g-iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (278)
T PRK08277 10 GKVAVITGGGGV-LGGAMAKELARA--GAKVAILDRNQEKAEAVVAEIK---AAGGEALAVKADVLDKESLEQARQQILE 83 (278)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 357888886554 4433 3443 3589999988766655433221 12234556666654331 10
Q ss_pred -CCccceEEEec
Q 030823 159 -ERYACRFFVLA 169 (171)
Q Consensus 159 -~~sfDlV~s~~ 169 (171)
-+.+|+++.++
T Consensus 84 ~~g~id~li~~a 95 (278)
T PRK08277 84 DFGPCDILINGA 95 (278)
T ss_pred HcCCCCEEEECC
Confidence 14688888775
No 356
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.70 E-value=83 Score=24.36 Aligned_cols=70 Identities=10% Similarity=0.003 Sum_probs=39.4
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-C---------C
Q 030823 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-L---------K 158 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f---------~ 158 (171)
.++|-.|+. |.++..+ .+. ..+|++++-+++-++...... ..+.++.++.+|..... + .
T Consensus 6 ~~vlItGas-g~iG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 6 KVAIVTGAS-SGIGEGIARRFAAE--GARVVVTDRNEEAAERVAAEI----LAGGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred cEEEEECCC-ChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH----hcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 578888854 4444444 443 357999999986655543321 11234556666654332 0 0
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|+|+.++
T Consensus 79 ~~~~d~vi~~a 89 (251)
T PRK07231 79 FGSVDILVNNA 89 (251)
T ss_pred hCCCCEEEECC
Confidence 13578888765
No 357
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=51.39 E-value=68 Score=28.22 Aligned_cols=45 Identities=11% Similarity=-0.078 Sum_probs=34.4
Q ss_pred ccCCCeEEEEcCCCcHHHHHHhhcCC----CcEEEEEeCCHHHHHHHHH
Q 030823 89 RKTFPTALCLGGSLEAVRRLLRGRGG----IEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 89 ~~~~~~vLDlGcGtG~l~~~L~~~~~----~~~v~gvD~S~~mL~~a~~ 133 (171)
.++..+|||+++..|.=+..|.+..- .+.|++-|.++.-+.....
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~ 201 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVH 201 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHH
Confidence 46789999999999988877765322 3489999999877766543
No 358
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.35 E-value=5.8 Score=31.25 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=31.1
Q ss_pred CeEEEEcCCCcHHHHHH-hhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823 93 PTALCLGGSLEAVRRLL-RGRGGIEKLIMMDTSYDMLKLCKDA 134 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L-~~~~~~~~v~gvD~S~~mL~~a~~~ 134 (171)
..||++|.|--.++-.+ +-..+...|+..|-.++.+...++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki 73 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKI 73 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHH
Confidence 56899998854444444 4444678999999999999888653
No 359
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.05 E-value=35 Score=28.48 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=40.7
Q ss_pred CeEEEEcCCCcHHHHHHhhcC------C---CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC--------
Q 030823 93 PTALCLGGSLEAVRRLLRGRG------G---IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-------- 155 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~------~---~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-------- 155 (171)
.+++|++...|.++..|.++. . ..+|+++|+-+ |.-+ + .+.-+.+|+...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-MaPI----------~--GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MAPI----------E--GVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CCcc----------C--ceEEeecccCCHhHHHHHHH
Confidence 578999999999998886521 1 12499999832 2211 2 244456776544
Q ss_pred CCCCCccceEEEe
Q 030823 156 PLKERYACRFFVL 168 (171)
Q Consensus 156 Pf~~~sfDlV~s~ 168 (171)
-|..+..|+|+|-
T Consensus 110 hfggekAdlVvcD 122 (294)
T KOG1099|consen 110 HFGGEKADLVVCD 122 (294)
T ss_pred HhCCCCccEEEeC
Confidence 2556788888874
No 360
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=51.05 E-value=82 Score=26.00 Aligned_cols=72 Identities=15% Similarity=-0.037 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC----
Q 030823 92 FPTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~----L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~---- 158 (171)
..++|-.|+..| ++.. |.+. ..+|+.++.+++-++...+... ..+..+.++.+|..... +.
T Consensus 6 ~k~vlVTGas~g-IG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 6 KGTVIITGASSG-VGLYAAKALAKR--GWHVIMACRNLKKAEAAAQELG---IPPDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCEEEEEcCCCh-HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhh---ccCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 356888886544 4444 4443 3689999888766555433221 12234556666654432 11
Q ss_pred -CCccceEEEec
Q 030823 159 -ERYACRFFVLA 169 (171)
Q Consensus 159 -~~sfDlV~s~~ 169 (171)
.+.+|+|+.+|
T Consensus 80 ~~~~iD~li~nA 91 (322)
T PRK07453 80 LGKPLDALVCNA 91 (322)
T ss_pred hCCCccEEEECC
Confidence 13589888876
No 361
>PRK05872 short chain dehydrogenase; Provisional
Probab=50.88 E-value=85 Score=25.66 Aligned_cols=72 Identities=18% Similarity=0.043 Sum_probs=39.8
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~ 158 (171)
..++|-.|++.| .+...|.+. ..+|+.++.+++-++...+.. ..+..+..+.+|..... + .
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~l~~~~~~l----~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHAR--GAKLALVDLEEAELAALAAEL----GGDDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh----cCCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 467888886555 233334443 368999999888776654322 11223333345543321 0 0
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|+|+.++
T Consensus 83 ~g~id~vI~nA 93 (296)
T PRK05872 83 FGGIDVVVANA 93 (296)
T ss_pred cCCCCEEEECC
Confidence 14689988876
No 362
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=50.85 E-value=46 Score=27.93 Aligned_cols=75 Identities=8% Similarity=-0.172 Sum_probs=42.2
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCccce
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERYACR 164 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f~--~~sfDl 164 (171)
...++||-.| |+|.++.++.+.. ...+|++++-++.-........ ..+..+.++.+|..... +. -..+|.
T Consensus 8 ~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (353)
T PLN02896 8 SATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKW----KEGDRLRLFRADLQEEGSFDEAVKGCDG 82 (353)
T ss_pred cCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhh----ccCCeEEEEECCCCCHHHHHHHHcCCCE
Confidence 4567899888 6888877775421 2358988887654333221111 11224566777765432 10 124788
Q ss_pred EEEec
Q 030823 165 FFVLA 169 (171)
Q Consensus 165 V~s~~ 169 (171)
|+.+|
T Consensus 83 Vih~A 87 (353)
T PLN02896 83 VFHVA 87 (353)
T ss_pred EEECC
Confidence 88765
No 363
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=50.68 E-value=90 Score=24.99 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=40.5
Q ss_pred eEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC----CCCCCccceEEE
Q 030823 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL----PLKERYACRFFV 167 (171)
Q Consensus 94 ~vLDlGcGt--G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L----Pf~~~sfDlV~s 167 (171)
+++-+|||. +.+++.|.+ ....|+.+|..++-++.... .......+++|.... ...-..+|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d~~~~~~~~~-------~~~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE--EGHNVVLIDRDEERVEEFLA-------DELDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh--CCCceEEEEcCHHHHHHHhh-------hhcceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 467777775 244455554 33699999999999888432 112344566766543 233467888775
Q ss_pred e
Q 030823 168 L 168 (171)
Q Consensus 168 ~ 168 (171)
.
T Consensus 73 ~ 73 (225)
T COG0569 73 A 73 (225)
T ss_pred e
Confidence 4
No 364
>PRK08251 short chain dehydrogenase; Provisional
Probab=50.55 E-value=1.2e+02 Score=23.60 Aligned_cols=75 Identities=15% Similarity=-0.014 Sum_probs=42.0
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-C---------CCC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-L---------KER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f---------~~~ 160 (171)
.++|-.|+ +|.++..+.+.. ...+|+.++.+++.++...+.... ..++..+.++.+|..... + .-+
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLA-RYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-hCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46788885 555555554311 235899999888777655432210 112345666667765431 0 114
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
..|.|+.++
T Consensus 81 ~id~vi~~a 89 (248)
T PRK08251 81 GLDRVIVNA 89 (248)
T ss_pred CCCEEEECC
Confidence 578888775
No 365
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=50.05 E-value=63 Score=27.57 Aligned_cols=34 Identities=18% Similarity=0.034 Sum_probs=28.6
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCH
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY 125 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~ 125 (171)
.+.+...|+|.-.|.++-.|-++. -.|+++|.-+
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~--m~V~aVDng~ 243 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRN--MRVYAVDNGP 243 (358)
T ss_pred cCCceeeecccCCCccchhhhhcc--eEEEEeccch
Confidence 366889999999999999998744 7999999754
No 366
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=49.80 E-value=38 Score=28.43 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=29.2
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~ 133 (171)
++.++||-+|||+ |.++..+++. ....+|+++|.+++-++.+++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4568999999753 2233333442 234589999999988887753
No 367
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=49.73 E-value=41 Score=28.16 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=31.2
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+..+||-+|||+ |..+..+++... .+|+++|.+++.++.+++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHH
Confidence 3568999999854 555555555433 479999999999888864
No 368
>PRK09242 tropinone reductase; Provisional
Probab=49.70 E-value=1.2e+02 Score=23.71 Aligned_cols=75 Identities=20% Similarity=0.068 Sum_probs=41.8
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~ 158 (171)
..++|-.|++.| .+...|.+. ..+|+.++.+++.++...+.... ..++.++.++.+|..... + .
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGL--GADVLIVARDADALAQARDELAE-EFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHh-hCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 357888887554 233334443 35899999888776655432210 012334556667654321 0 1
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|.|+.++
T Consensus 86 ~g~id~li~~a 96 (257)
T PRK09242 86 WDGLHILVNNA 96 (257)
T ss_pred cCCCCEEEECC
Confidence 14688888775
No 369
>PRK06138 short chain dehydrogenase; Provisional
Probab=49.47 E-value=74 Score=24.74 Aligned_cols=72 Identities=11% Similarity=-0.026 Sum_probs=39.4
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----CC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----ER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~~ 160 (171)
.++|-.||. |.++..+.+.. ...+|++++-+++.+....+.. ..+.++.++.+|..... +. -+
T Consensus 6 k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 6 RVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAI----AAGGRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHH----hcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 578888865 44444443211 2368999988876655443321 12334556666654321 00 13
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
.+|.|+.++
T Consensus 81 ~id~vi~~a 89 (252)
T PRK06138 81 RLDVLVNNA 89 (252)
T ss_pred CCCEEEECC
Confidence 678888765
No 370
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=49.21 E-value=95 Score=24.33 Aligned_cols=74 Identities=12% Similarity=-0.021 Sum_probs=40.2
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CC
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~~ 159 (171)
..++|-.|+++| ++..+.+.. ...+|+.+|.+++-+....+... ..+..+.++.+|..... + .-
T Consensus 9 ~k~~lItGas~g-iG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 9 GKNILITGSAQG-IGFLLATGLAEYGAEIIINDITAERAELAVAKLR---QEGIKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH---hcCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 357888885544 444443211 23689999988766655433221 12333445556654321 1 11
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|.|+.++
T Consensus 85 ~~id~vi~~a 94 (254)
T PRK08085 85 GPIDVLINNA 94 (254)
T ss_pred CCCCEEEECC
Confidence 4688888876
No 371
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=48.75 E-value=91 Score=24.25 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCH
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSY 125 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~ 125 (171)
..++|-.|++.| .+...|.+. ..+|++++.++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~--G~~vi~~~r~~ 39 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEA--GADIVGAGRSE 39 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCch
Confidence 367888887654 233444443 35888888765
No 372
>PRK12939 short chain dehydrogenase; Provisional
Probab=48.54 E-value=1e+02 Score=23.80 Aligned_cols=74 Identities=9% Similarity=-0.104 Sum_probs=40.9
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCC-----
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKE----- 159 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~----- 159 (171)
..++|-.|+ +|.++..+.+.. ...+|++++.+++-+....+... ..+.++.++.+|..... +..
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE---AAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 367887775 555555554311 23588889888776655433221 12234566667665321 110
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|.|+.++
T Consensus 83 ~~id~vi~~a 92 (250)
T PRK12939 83 GGLDGLVNNA 92 (250)
T ss_pred CCCCEEEECC
Confidence 4678887765
No 373
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=48.51 E-value=49 Score=25.71 Aligned_cols=43 Identities=28% Similarity=0.281 Sum_probs=31.6
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+..+||..|+|+ |.....+.... ..+|++++.+++..+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH
Confidence 4568999999986 55555555432 3789999999988877754
No 374
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=48.31 E-value=50 Score=28.35 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=23.5
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCCH
Q 030823 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTSY 125 (171)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~gvD~S~ 125 (171)
.+||-+|||. | .++..|... .+++++.+|...
T Consensus 25 ~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 6899999994 3 445556554 468999999864
No 375
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=48.22 E-value=84 Score=24.45 Aligned_cols=73 Identities=14% Similarity=-0.053 Sum_probs=40.5
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CCC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~~~ 160 (171)
.++|-.| |+|.++..+.+.. ...+|++++.+++-++...+... ..+.++.++.+|....- + ..+
T Consensus 5 ~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 5 KVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQ---KAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4677777 5666666664321 23589999988876665433221 12334555666654221 0 013
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
.+|+|+.++
T Consensus 81 ~~d~vi~~a 89 (258)
T PRK12429 81 GVDILVNNA 89 (258)
T ss_pred CCCEEEECC
Confidence 578887765
No 376
>PLN02253 xanthoxin dehydrogenase
Probab=47.98 E-value=81 Score=25.21 Aligned_cols=72 Identities=17% Similarity=0.080 Sum_probs=38.0
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----CC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----ER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~~ 160 (171)
.++|-.|+ +|.++..+.+.. ...+|+.+|.+++..+...+.. ..+.++.++.+|..... +. -+
T Consensus 19 k~~lItGa-s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 19 KVALVTGG-ATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSL----GGEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred CEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh----cCCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 56788874 444555443211 2368888888776655443321 11223555666654321 00 13
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
..|.|+.++
T Consensus 94 ~id~li~~A 102 (280)
T PLN02253 94 TLDIMVNNA 102 (280)
T ss_pred CCCEEEECC
Confidence 578887765
No 377
>PRK07062 short chain dehydrogenase; Provisional
Probab=47.53 E-value=1.4e+02 Score=23.55 Aligned_cols=75 Identities=13% Similarity=-0.054 Sum_probs=41.4
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-C---------C
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-L---------K 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f---------~ 158 (171)
..++|-.|++.| .+...|.+. ..+|+.++.+++-++...+.... ...+.++.++.+|..... . .
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEA--GASVAICGRDEERLASAEARLRE-KFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHh-hCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 367888886665 233334443 36899999988766655432210 011234445556554321 0 1
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|+++.++
T Consensus 85 ~g~id~li~~A 95 (265)
T PRK07062 85 FGGVDMLVNNA 95 (265)
T ss_pred cCCCCEEEECC
Confidence 14688888876
No 378
>PRK08643 acetoin reductase; Validated
Probab=47.50 E-value=1e+02 Score=24.14 Aligned_cols=73 Identities=15% Similarity=-0.006 Sum_probs=38.2
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CCC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~~~ 160 (171)
.++|-.|+..| ++..+.+.. ...+|+.+|.+++.++....... ..+.++.++.+|..... + .-+
T Consensus 3 k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS---KDGGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 35677774444 444443211 23588888888766655443221 12234455666654331 1 114
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
..|.|+.++
T Consensus 79 ~id~vi~~a 87 (256)
T PRK08643 79 DLNVVVNNA 87 (256)
T ss_pred CCCEEEECC
Confidence 578887765
No 379
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=47.21 E-value=98 Score=27.05 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=46.8
Q ss_pred CCccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeC
Q 030823 45 SSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDT 123 (171)
Q Consensus 45 ~~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~ 123 (171)
.+.+..+|-++++.|..|. ++|+-.+-.+.+ ...-|+-+|||. |.+...+.-+....++-.+|.
T Consensus 42 ~sk~~~ydd~lireqLarN------~aFfGee~m~kl---------~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 42 GSKPRQYDDELIREQLARN------YAFFGEEGMEKL---------TNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred CCCcccccHHHHHHHHHhH------HhhhhhhHHHHh---------cCcEEEEEecCchhHHHHHHHHHhcCceEEEech
Confidence 4456689999998887653 555554444433 235578888874 666655554456789999998
Q ss_pred CHHHHHHH
Q 030823 124 SYDMLKLC 131 (171)
Q Consensus 124 S~~mL~~a 131 (171)
.+-.|...
T Consensus 107 dqVSlsSL 114 (430)
T KOG2018|consen 107 DQVSLSSL 114 (430)
T ss_pred hhccHhhh
Confidence 66555443
No 380
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=47.16 E-value=1.5e+02 Score=23.78 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHHHHHHHhcccC--CCeEEEEcCCCcHH-------HHHHhhcC
Q 030823 68 RPNDSFVDAVAENLLDRLEDCRKT--FPTALCLGGSLEAV-------RRLLRGRG 113 (171)
Q Consensus 68 ~~~~~l~~~va~~l~~rL~~i~~~--~~~vLDlGcGtG~l-------~~~L~~~~ 113 (171)
-.-..|.+..+..+.+.+...-.. ..+|+-+ ||+|+. +++|...+
T Consensus 23 ~~~~~LMEnAG~aVa~~i~~~~~~~~~~~v~vl-cG~GnNGGDG~VaAR~L~~~G 76 (203)
T COG0062 23 LPLDILMENAGLAVARAILREYPLGRARRVLVL-CGPGNNGGDGLVAARHLKAAG 76 (203)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCcccCCEEEEE-ECCCCccHHHHHHHHHHHhCC
Confidence 335667777777666655542222 3446655 888865 35665544
No 381
>PRK08328 hypothetical protein; Provisional
Probab=46.68 E-value=69 Score=25.76 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=22.4
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030823 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~gvD~S 124 (171)
.+|+-+|||. | .++..|... .+++++.+|..
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D 60 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQ 60 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 6899999993 4 445555553 57899999953
No 382
>PRK07774 short chain dehydrogenase; Provisional
Probab=46.67 E-value=95 Score=24.11 Aligned_cols=73 Identities=10% Similarity=-0.107 Sum_probs=40.7
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC----------CCC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL----------KER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf----------~~~ 160 (171)
.++|-.| |+|.++..+.+.. ...+|+.++-+++-+....+... ..+.+..++.+|.....- .-+
T Consensus 7 k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 7 KVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIV---ADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 5688888 5555665554311 23689999988765544332211 122234556676654320 013
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
.+|+|+.++
T Consensus 83 ~id~vi~~a 91 (250)
T PRK07774 83 GIDYLVNNA 91 (250)
T ss_pred CCCEEEECC
Confidence 589998876
No 383
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.66 E-value=45 Score=27.64 Aligned_cols=73 Identities=12% Similarity=-0.048 Sum_probs=43.8
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCC-HHHHHHHHHhhhhhccCCCce-eEEEccC--------CCCCC
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTS-YDMLKLCKDAQQDAHNDNIET-CFVVGDE--------EFLPL 157 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S-~~mL~~a~~~~~~~~~~~~~~-~~~~~D~--------e~LPf 157 (171)
.....||-.||..|.++..|+..+ ..-.|+++--+ +.|-+.+.+ .++.+ ..-+.+. |...+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-------~gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-------FGLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-------hCCeeEEeccCChHHHHHHHHHHhhC
Confidence 456789999999998888876422 23477776654 345555533 22211 1111222 22346
Q ss_pred CCCccceEEEec
Q 030823 158 KERYACRFFVLA 169 (171)
Q Consensus 158 ~~~sfDlV~s~~ 169 (171)
++++.|+.+.||
T Consensus 78 ~~Gkld~L~NNA 89 (289)
T KOG1209|consen 78 PDGKLDLLYNNA 89 (289)
T ss_pred CCCceEEEEcCC
Confidence 789999998876
No 384
>PRK05993 short chain dehydrogenase; Provisional
Probab=46.60 E-value=1e+02 Score=24.73 Aligned_cols=67 Identities=7% Similarity=-0.125 Sum_probs=38.4
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC------C
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK------E 159 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~------~ 159 (171)
.++|-.|++ |.++..+.+.. ...+|++++.+++-++...+ .+ +.++.+|..... +. .
T Consensus 5 k~vlItGas-ggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~-------~~--~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 5 RSILITGCS-SGIGAYCARALQSDGWRVFATCRKEEDVAALEA-------EG--LEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------CC--ceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 468888865 44544443211 33689999998877765432 12 344555554321 11 1
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|+|+.++
T Consensus 75 g~id~li~~A 84 (277)
T PRK05993 75 GRLDALFNNG 84 (277)
T ss_pred CCccEEEECC
Confidence 4678888875
No 385
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=46.06 E-value=53 Score=27.59 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=30.4
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+.++||-.|||. |..+..+++.....+|+++|.+++-++.+++
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4568899888743 3444455554444469999999998888864
No 386
>PRK07904 short chain dehydrogenase; Provisional
Probab=45.86 E-value=1.1e+02 Score=24.43 Aligned_cols=76 Identities=13% Similarity=-0.005 Sum_probs=41.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC--C-CcEEEEEeCCHHH-HHHHHHhhhhhccCCCceeEEEccCCCCC-----C----
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG--G-IEKLIMMDTSYDM-LKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L---- 157 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~--~-~~~v~gvD~S~~m-L~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f---- 157 (171)
...+||-.|++.| ++..+.+.. . ..+|+.++.+++- ++...+.... ....++.++.+|..... +
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~--~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA--AGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh--cCCCceEEEEecCCChHHHHHHHHHHH
Confidence 3467999997555 554444321 2 2588888887653 4443322210 11224666777754322 1
Q ss_pred CCCccceEEEec
Q 030823 158 KERYACRFFVLA 169 (171)
Q Consensus 158 ~~~sfDlV~s~~ 169 (171)
..+..|+++.++
T Consensus 84 ~~g~id~li~~a 95 (253)
T PRK07904 84 AGGDVDVAIVAF 95 (253)
T ss_pred hcCCCCEEEEee
Confidence 115788887654
No 387
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=45.48 E-value=2.7e+02 Score=27.27 Aligned_cols=97 Identities=7% Similarity=0.093 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHH------HHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc---
Q 030823 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAV------RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--- 140 (171)
Q Consensus 70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l------~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~--- 140 (171)
..|.+..++.++++.+.. .+...+|-...|||-. ...|.+.+..++|.-+=-=...+++|.+.......
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~--g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSK--GQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred chHHHHHHHHHHHHHHhc--CCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 467777777888776653 2334677889999933 33344444455555443335677777644221100
Q ss_pred -------CCCce--eEEE-----------c-cCCCCCCCCCccceEEEe
Q 030823 141 -------DNIET--CFVV-----------G-DEEFLPLKERYACRFFVL 168 (171)
Q Consensus 141 -------~~~~~--~~~~-----------~-D~e~LPf~~~sfDlV~s~ 168 (171)
..... ...+ + +.+..+|.++.||+|++.
T Consensus 244 ~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvID 292 (875)
T COG4096 244 KMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVID 292 (875)
T ss_pred ceeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEec
Confidence 00101 0011 1 245668999999999974
No 388
>PRK06949 short chain dehydrogenase; Provisional
Probab=45.46 E-value=1.2e+02 Score=23.75 Aligned_cols=74 Identities=11% Similarity=-0.019 Sum_probs=41.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-C---------CC
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-L---------KE 159 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f---------~~ 159 (171)
..++|-.| |+|.++..+.+.. ...+|++++.+++.++....... ....++.++.+|..... + .-
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIE---AEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 46788888 5555655554321 23589999998877765543211 12224555666654321 0 11
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|+|+.++
T Consensus 85 ~~~d~li~~a 94 (258)
T PRK06949 85 GTIDILVNNS 94 (258)
T ss_pred CCCCEEEECC
Confidence 3578888765
No 389
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=45.31 E-value=59 Score=27.31 Aligned_cols=75 Identities=13% Similarity=-0.026 Sum_probs=41.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHH----HHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCcc
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDM----LKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERYA 162 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~m----L~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f~--~~sf 162 (171)
..+||-.| |+|.++.+|.+.. ...+|+++|....- +........ ......+.++.+|..... +. -..+
T Consensus 15 ~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 15 PKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVS--EEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred CCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccc--cccCCceEEEEccCCCHHHHHHHhhCC
Confidence 36899998 8998887775422 23589999974321 111110000 001123667888876532 10 1247
Q ss_pred ceEEEec
Q 030823 163 CRFFVLA 169 (171)
Q Consensus 163 DlV~s~~ 169 (171)
|.|+..|
T Consensus 92 d~ViHlA 98 (348)
T PRK15181 92 DYVLHQA 98 (348)
T ss_pred CEEEECc
Confidence 8888776
No 390
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=45.18 E-value=55 Score=27.39 Aligned_cols=72 Identities=14% Similarity=-0.146 Sum_probs=37.7
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCccceE
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERYACRF 165 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~sfDlV 165 (171)
.+||-.| |+|.++..+.+.. ...+|+++|.++.......... ....++.++.+|..... +....+|.|
T Consensus 5 k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 79 (349)
T TIGR02622 5 KKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELL----NLAKKIEDHFGDIRDAAKLRKAIAEFKPEIV 79 (349)
T ss_pred CEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHH----hhcCCceEEEccCCCHHHHHHHHhhcCCCEE
Confidence 5788888 7777666665421 2358999887654322111100 01113445666654322 222346888
Q ss_pred EEec
Q 030823 166 FVLA 169 (171)
Q Consensus 166 ~s~~ 169 (171)
+.++
T Consensus 80 ih~A 83 (349)
T TIGR02622 80 FHLA 83 (349)
T ss_pred EECC
Confidence 7665
No 391
>PF05059 Orbi_VP4: Orbivirus VP4 core protein; InterPro: IPR007753 Orbivirus are double stranded RNA retroviruses of which the Bluetongue virus (BTV) is a member. The core of BTV is a multienzyme complex composed of two major proteins (VP7 and VP3) and three minor proteins (VP1, VP4 and VP6) in addition to the viral genome. VP4 has been shown to perform all RNA capping activities and has both methyltransferase type 1 and type 2 activities associated with it [].; GO: 0019028 viral capsid; PDB: 2JHP_A 2JHA_A 2JH9_A 2JH8_A 2JHC_A.
Probab=44.93 E-value=34 Score=31.78 Aligned_cols=45 Identities=13% Similarity=0.022 Sum_probs=30.1
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeC
Q 030823 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDT 123 (171)
Q Consensus 79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~ 123 (171)
+-|+..|..+.-..+.|.-+|||.|.....+++ ++.-.+.+++|+
T Consensus 178 EKLVSMLDY~vysad~V~YVGsGDlRTL~~F~krdp~RF~rv~W~~~DP 226 (644)
T PF05059_consen 178 EKLVSMLDYAVYSADEVHYVGSGDLRTLMQFAKRDPKRFNRVQWHCIDP 226 (644)
T ss_dssp -HHHHHHHHH-SS-SEEEEES-TTSHHHHHHHHHSHHHHHTSEEEEE-T
T ss_pred hhHHHHHHhhhccccEEEEeccCCcHHHHHHHhhChhhhhceEEEEECC
Confidence 445555666666778999999999999999975 233457888887
No 392
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=44.64 E-value=57 Score=27.67 Aligned_cols=44 Identities=14% Similarity=0.016 Sum_probs=30.6
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
++.++||-+|||. |.++..+++.....+|+++|.+++-++.+++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3568899998753 3444555554334489999999998888864
No 393
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=44.37 E-value=99 Score=23.98 Aligned_cols=73 Identities=12% Similarity=-0.058 Sum_probs=39.5
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----CC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----ER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~~ 160 (171)
.++|-.|+ +|.++..+.+.. ...+|+.++.+++-.....+... ..+.++.++.+|..... +. -+
T Consensus 4 ~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 4 KTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIR---AKGGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56888885 455555543211 23589999988876655433211 12234555666654321 00 13
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
..|+|+.++
T Consensus 80 ~~d~vi~~a 88 (250)
T TIGR03206 80 PVDVLVNNA 88 (250)
T ss_pred CCCEEEECC
Confidence 578777765
No 394
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=44.11 E-value=61 Score=30.00 Aligned_cols=65 Identities=11% Similarity=0.161 Sum_probs=40.1
Q ss_pred CeEEEEcCCCcHHHHHHhhc--CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEE
Q 030823 93 PTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERYACRFF 166 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~--~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~~~sfDlV~ 166 (171)
++|+-+|+| .+++.+.+. ....+++.+|.+++.++.+++ .+ ...+.||..... ..-+..|+|+
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-------~g--~~v~~GDat~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK-------YG--YKVYYGDATQLELLRAAGAEKAEAIV 469 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-------CC--CeEEEeeCCCHHHHHhcCCccCCEEE
Confidence 567666554 455555431 123589999999999998864 33 334678776542 2234667666
Q ss_pred Ee
Q 030823 167 VL 168 (171)
Q Consensus 167 s~ 168 (171)
+.
T Consensus 470 ~~ 471 (601)
T PRK03659 470 IT 471 (601)
T ss_pred EE
Confidence 54
No 395
>PRK06500 short chain dehydrogenase; Provisional
Probab=44.00 E-value=1.1e+02 Score=23.61 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=35.8
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------C--CCC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------L--KER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--------f--~~~ 160 (171)
.++|-.|++ |.++..+.+.. ...+|++++.+++-+....+. .+.++.++.+|..... . ..+
T Consensus 7 k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 7 KTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAE------LGESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH------hCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 467777754 44444443211 235788888877655544321 1223445555543321 0 013
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
.+|.|+.++
T Consensus 80 ~id~vi~~a 88 (249)
T PRK06500 80 RLDAVFINA 88 (249)
T ss_pred CCCEEEECC
Confidence 578777665
No 396
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=43.81 E-value=57 Score=25.91 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=30.0
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+..++|-.|||. |..+..+++.....+|++++.+++.++.+++
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 4567888888754 4445555554333349999999998887764
No 397
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=43.61 E-value=49 Score=30.09 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=39.9
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEE
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERYACRFF 166 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~~~sfDlV~ 166 (171)
++++-+|||. +++.+.+.. ...+++.+|.+++.++.+++ .+ ...+.+|..+.. ..-+..|.|+
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-------~g--~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRE-------RG--IRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-------CC--CeEEEcCCCCHHHHHhcCccccCEEE
Confidence 5677776655 555554321 23589999999999988864 23 344777766431 2235777555
Q ss_pred E
Q 030823 167 V 167 (171)
Q Consensus 167 s 167 (171)
.
T Consensus 487 v 487 (558)
T PRK10669 487 L 487 (558)
T ss_pred E
Confidence 4
No 398
>PRK06196 oxidoreductase; Provisional
Probab=43.46 E-value=1.3e+02 Score=24.82 Aligned_cols=70 Identities=17% Similarity=-0.026 Sum_probs=40.2
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CC
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~~ 159 (171)
..+||-.|++.| ++..+.+.. ...+|++++-+++-++...+.. . .+.++.+|..... + ..
T Consensus 26 ~k~vlITGasgg-IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l-----~--~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 26 GKTAIVTGGYSG-LGLETTRALAQAGAHVIVPARRPDVAREALAGI-----D--GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----h--hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 367888886544 554443211 2358999998887665543211 1 2445666665432 0 12
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|+|+.++
T Consensus 98 ~~iD~li~nA 107 (315)
T PRK06196 98 RRIDILINNA 107 (315)
T ss_pred CCCCEEEECC
Confidence 5688888876
No 399
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=43.27 E-value=1e+02 Score=25.36 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=34.3
Q ss_pred eEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCH----HHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCcc
Q 030823 94 TALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSY----DMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERYA 162 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~----~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~sf 162 (171)
+||-.| |+|.++..+.+.. ...+|++++... ..+....+ ..+.+..++.+|..... +....+
T Consensus 2 ~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (338)
T PRK10675 2 RVLVTG-GSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIER------LGGKHPTFVEGDIRNEALLTEILHDHAI 74 (338)
T ss_pred eEEEEC-CCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHH------hcCCCceEEEccCCCHHHHHHHHhcCCC
Confidence 467776 6676666664321 235788887421 11111111 11223445666654332 333468
Q ss_pred ceEEEec
Q 030823 163 CRFFVLA 169 (171)
Q Consensus 163 DlV~s~~ 169 (171)
|.|+.++
T Consensus 75 d~vvh~a 81 (338)
T PRK10675 75 DTVIHFA 81 (338)
T ss_pred CEEEECC
Confidence 8888765
No 400
>PRK06197 short chain dehydrogenase; Provisional
Probab=43.10 E-value=1.8e+02 Score=23.65 Aligned_cols=76 Identities=9% Similarity=-0.094 Sum_probs=40.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CC
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~~ 159 (171)
..+||-.|+. |.++..+.+.. ...+|+.++.+++....+.+.... ...+.++.++.+|..... + .-
T Consensus 16 ~k~vlItGas-~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 16 GRVAVVTGAN-TGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITA-ATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 3578877754 44554443211 235888888877665544332210 012234566677765442 0 11
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|+|+.+|
T Consensus 94 ~~iD~li~nA 103 (306)
T PRK06197 94 PRIDLLINNA 103 (306)
T ss_pred CCCCEEEECC
Confidence 4688888876
No 401
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=42.96 E-value=31 Score=32.53 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=23.9
Q ss_pred CCeEEEEcCCC-cH-HHHHHhhcCCCcEEEEEeC
Q 030823 92 FPTALCLGGSL-EA-VRRLLRGRGGIEKLIMMDT 123 (171)
Q Consensus 92 ~~~vLDlGcGt-G~-l~~~L~~~~~~~~v~gvD~ 123 (171)
..+||-+|||+ |. +++.|.. .++++++.+|.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~-~GVg~ItlVD~ 370 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIG-WGVRHITFVDN 370 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHH-cCCCeEEEEcC
Confidence 47899999997 64 5666665 36789999995
No 402
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=42.89 E-value=79 Score=27.06 Aligned_cols=68 Identities=19% Similarity=0.062 Sum_probs=38.6
Q ss_pred EEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCccceEEE
Q 030823 95 ALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERYACRFFV 167 (171)
Q Consensus 95 vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f~--~~sfDlV~s 167 (171)
|+-+|| |.++... .+..+..+|+..|.+.+-++...+.. ...++.++..|..... +. =...|+|++
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~l~~~~~~~dvVin 73 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-----LGDRVEAVQVDVNDPESLAELLRGCDVVIN 73 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-----cccceeEEEEecCCHHHHHHHHhcCCEEEE
Confidence 567887 6665444 44444448999999998887765321 3345777777766543 11 134499998
Q ss_pred ec
Q 030823 168 LA 169 (171)
Q Consensus 168 ~~ 169 (171)
++
T Consensus 74 ~~ 75 (386)
T PF03435_consen 74 CA 75 (386)
T ss_dssp -S
T ss_pred CC
Confidence 75
No 403
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=42.70 E-value=1.1e+02 Score=24.23 Aligned_cols=71 Identities=10% Similarity=-0.112 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CC---CCccc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LK---ERYAC 163 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~---~~sfD 163 (171)
+.++||-+|+ +|.++..+.+.. ...+|+++.-+++-+.... ..+..+.++.+|....+ +. ...+|
T Consensus 16 ~~~~ilItGa-sG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-------~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d 87 (251)
T PLN00141 16 KTKTVFVAGA-TGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL-------PQDPSLQIVRADVTEGSDKLVEAIGDDSD 87 (251)
T ss_pred cCCeEEEECC-CcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc-------ccCCceEEEEeeCCCCHHHHHHHhhcCCC
Confidence 3478999984 555555553211 2357888766655432211 11224666777765421 11 13588
Q ss_pred eEEEec
Q 030823 164 RFFVLA 169 (171)
Q Consensus 164 lV~s~~ 169 (171)
+|++++
T Consensus 88 ~vi~~~ 93 (251)
T PLN00141 88 AVICAT 93 (251)
T ss_pred EEEECC
Confidence 888764
No 404
>PRK06482 short chain dehydrogenase; Provisional
Probab=42.47 E-value=1.2e+02 Score=24.17 Aligned_cols=70 Identities=13% Similarity=-0.106 Sum_probs=39.4
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----CC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----ER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~~ 160 (171)
.++|-.|+ +|.++..+.+.. ...+|+.++-+++.++...+. ...++.++.+|..... +. -+
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR------YGDRLWVLQLDVTDSAAVRAVVDRAFAALG 75 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh------ccCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35777775 555555554311 235899999888766654431 1123555666665431 00 13
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
.+|.|+.++
T Consensus 76 ~id~vi~~a 84 (276)
T PRK06482 76 RIDVVVSNA 84 (276)
T ss_pred CCCEEEECC
Confidence 568888765
No 405
>PRK07576 short chain dehydrogenase; Provisional
Probab=42.33 E-value=1.3e+02 Score=23.93 Aligned_cols=74 Identities=11% Similarity=-0.048 Sum_probs=39.7
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CC
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~~ 159 (171)
..++|-.|. +|.++..+.+.. ...+|+.+|.+++-+....+... ..+.++.++.+|..... + .-
T Consensus 9 ~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 9 GKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQ---QAGPEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---HhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 357888884 554554443211 23689999998776654432211 12223445566654321 1 01
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|+|+.++
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 3578888765
No 406
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=42.32 E-value=1.4e+02 Score=23.20 Aligned_cols=72 Identities=11% Similarity=-0.038 Sum_probs=39.8
Q ss_pred eEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------C--CCCc
Q 030823 94 TALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------L--KERY 161 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--------f--~~~s 161 (171)
++|-.| |+|.++..+.+.. ...+|++++.+++..+...+... ..+.++.++.+|..... . ..+.
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVAT---DAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 567777 5566666554321 23589999998776655443221 12234555666654321 0 1235
Q ss_pred cceEEEec
Q 030823 162 ACRFFVLA 169 (171)
Q Consensus 162 fDlV~s~~ 169 (171)
.|.|+.++
T Consensus 79 ~d~vi~~a 86 (255)
T TIGR01963 79 LDILVNNA 86 (255)
T ss_pred CCEEEECC
Confidence 78887765
No 407
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=42.13 E-value=43 Score=26.40 Aligned_cols=31 Identities=32% Similarity=0.258 Sum_probs=22.9
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030823 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~gvD~S 124 (171)
.+|+-+|||. | .++..|... .+++++.+|.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 6899999984 3 345555553 56799999998
No 408
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=42.11 E-value=1.2e+02 Score=25.17 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHH
Q 030823 92 FPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYD 126 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~ 126 (171)
..++|-+|+| | .++.+ ... ...+|+.++.+++
T Consensus 126 ~k~vlI~GAG-G-agrAia~~La~~-G~~~V~I~~R~~~ 161 (289)
T PRK12548 126 GKKLTVIGAG-G-AATAIQVQCALD-GAKEITIFNIKDD 161 (289)
T ss_pred CCEEEEECCc-H-HHHHHHHHHHHC-CCCEEEEEeCCch
Confidence 3578999986 5 33333 332 3457999998863
No 409
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=41.87 E-value=61 Score=28.07 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a 131 (171)
..-+|.-+|+|..++...|.+ ...+|.++|+.+.-+..-
T Consensus 63 ~ghrivtigSGGcn~L~ylsr--~Pa~id~VDlN~ahiAln 101 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSR--APARIDVVDLNPAHIALN 101 (414)
T ss_pred CCcEEEEecCCcchHHHHhhc--CCceeEEEeCCHHHHHHH
Confidence 446899999999999998987 348999999999877654
No 410
>PRK05855 short chain dehydrogenase; Validated
Probab=41.68 E-value=1.3e+02 Score=26.57 Aligned_cols=74 Identities=7% Similarity=-0.172 Sum_probs=42.9
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CC
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~~ 159 (171)
..++|-+|+ +|.++..+.+.. ...+|+.++.+++-++...+... ..+.++.++.+|..... + ..
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIR---AAGAVAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 367888885 454555443211 23589999999876665433221 12345566667665432 1 12
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|+++.+|
T Consensus 391 g~id~lv~~A 400 (582)
T PRK05855 391 GVPDIVVNNA 400 (582)
T ss_pred CCCcEEEECC
Confidence 4689998886
No 411
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=41.64 E-value=36 Score=29.64 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCc----HHHHHHhhcCCCcEEEEEeCCHHHHHH
Q 030823 92 FPTALCLGGSLE----AVRRLLRGRGGIEKLIMMDTSYDMLKL 130 (171)
Q Consensus 92 ~~~vLDlGcGtG----~l~~~L~~~~~~~~v~gvD~S~~mL~~ 130 (171)
...++-.|.||| .+++.|.+.++.-+|+++|+.+..+-.
T Consensus 212 ~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~ 254 (362)
T KOG1252|consen 212 KVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLS 254 (362)
T ss_pred CCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceecc
Confidence 356899999999 567888888888899999998765543
No 412
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=41.39 E-value=1.5e+02 Score=25.68 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=40.4
Q ss_pred eEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEEE
Q 030823 94 TALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERYACRFFV 167 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~~~sfDlV~s 167 (171)
+|+-+|| |.++..+.+.. ....|+.+|.+++-++..++. ..+.++.+|..... ..-+.+|.|++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR--------LDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------cCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 4666766 67777775421 235899999999988776531 12445667765321 12356787776
Q ss_pred e
Q 030823 168 L 168 (171)
Q Consensus 168 ~ 168 (171)
.
T Consensus 72 ~ 72 (453)
T PRK09496 72 V 72 (453)
T ss_pred e
Confidence 5
No 413
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=41.34 E-value=82 Score=28.87 Aligned_cols=42 Identities=10% Similarity=0.001 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCCc-HHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 91 TFPTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 91 ~~~~vLDlGcGtG-~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
+..+++-+|||.= ..+..++.. ....|+.+|.+++-++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~-lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANS-LGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHH
Confidence 4589999999875 444444442 23579999999998888764
No 414
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=41.32 E-value=84 Score=26.97 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=23.2
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030823 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~gvD~S 124 (171)
.+||-+|||. | .++..|... .+++++.+|..
T Consensus 25 ~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D 57 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRD 57 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 7899999983 3 445666554 57899999986
No 415
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=41.23 E-value=47 Score=26.45 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
...+++|+=||+|.++..+.. ....|+..|+.+......+.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWKA 60 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHHH
Confidence 678999999999999988865 45799999999987777653
No 416
>PRK06153 hypothetical protein; Provisional
Probab=41.15 E-value=58 Score=28.84 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=23.0
Q ss_pred CeEEEEcCC-CcH-HHHHHhhcCCCcEEEEEeCC
Q 030823 93 PTALCLGGS-LEA-VRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 93 ~~vLDlGcG-tG~-l~~~L~~~~~~~~v~gvD~S 124 (171)
.+|+-+||| +|. ++..|++ .++++++.+|..
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR-~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAK-TPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHH-cCCCEEEEECCC
Confidence 789999997 454 4555555 467899999965
No 417
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=41.13 E-value=66 Score=22.17 Aligned_cols=14 Identities=0% Similarity=-0.007 Sum_probs=8.8
Q ss_pred EEEEcCCCcHHHHHH
Q 030823 95 ALCLGGSLEAVRRLL 109 (171)
Q Consensus 95 vLDlGcGtG~l~~~L 109 (171)
|| +-||+|.-+..+
T Consensus 5 IL-vvCgsG~~TS~m 18 (94)
T PRK10310 5 II-VACGGAVATSTM 18 (94)
T ss_pred EE-EECCCchhHHHH
Confidence 44 448999755555
No 418
>PLN02740 Alcohol dehydrogenase-like
Probab=41.13 E-value=63 Score=27.51 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=29.5
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+.++||-+|||. |.++..+++.....+|+++|.+++-++.+++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3567899998642 2233334444344479999999999888864
No 419
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=40.64 E-value=1e+02 Score=24.29 Aligned_cols=72 Identities=14% Similarity=0.023 Sum_probs=36.8
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~----- 158 (171)
..++|-.|++.| .+.+.|.+. ..+|+.++.+++ ++.+.+... ..+.++.++.+|..... +.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKA--GADIIITTHGTN-WDETRRLIE---KEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCcH-HHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467888887655 233334443 357888877632 333222111 12234555666655432 00
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|.++.++
T Consensus 89 ~g~id~li~~a 99 (258)
T PRK06935 89 FGKIDILVNNA 99 (258)
T ss_pred cCCCCEEEECC
Confidence 13578888765
No 420
>PRK06914 short chain dehydrogenase; Provisional
Probab=40.19 E-value=1.7e+02 Score=23.19 Aligned_cols=73 Identities=11% Similarity=-0.124 Sum_probs=38.3
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CC-----C
Q 030823 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LK-----E 159 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~-----~ 159 (171)
.++|-.|+. |.++..+ .+. ..+|++++-+++-++...+.... ...+..+.++.+|..... +. -
T Consensus 4 k~~lItGas-g~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 79 (280)
T PRK06914 4 KIAIVTGAS-SGFGLLTTLELAKK--GYLVIATMRNPEKQENLLSQATQ-LNLQQNIKVQQLDVTDQNSIHNFQLVLKEI 79 (280)
T ss_pred CEEEEECCC-chHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHHHHh-cCCCCceeEEecCCCCHHHHHHHHHHHHhc
Confidence 467888854 4445444 343 36888888877655444322110 011224556666665421 10 1
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|.|+.++
T Consensus 80 ~~id~vv~~a 89 (280)
T PRK06914 80 GRIDLLVNNA 89 (280)
T ss_pred CCeeEEEECC
Confidence 3568887765
No 421
>PRK10458 DNA cytosine methylase; Provisional
Probab=40.19 E-value=1.4e+02 Score=26.90 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=31.8
Q ss_pred CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
.+++|+=||.|-+...|...+ ...|.++|+.+...+.-+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~ 127 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYK 127 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHH
Confidence 489999999999999997653 467889999987766644
No 422
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=39.78 E-value=1.7e+02 Score=24.48 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHH
Q 030823 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML 128 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL 128 (171)
.+-|.+||.|.|.+++.+.+.+ ..++..++.....+
T Consensus 51 ~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFi 86 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFI 86 (326)
T ss_pred cceeEEecCCCCchhHHHHhcc-hhheeeeeeccccC
Confidence 3568999999999999998743 35666666655433
No 423
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=39.67 E-value=74 Score=27.82 Aligned_cols=67 Identities=9% Similarity=-0.121 Sum_probs=42.4
Q ss_pred CCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHH-HHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccc
Q 030823 92 FPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYD-MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYAC 163 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~S~~-mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfD 163 (171)
..++|-+| |+|.++++|.+ ++...++..+|..+. +...+.... .....+.++.+|....+.-.+.|+
T Consensus 4 ~~~vlVtG-G~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~----~~~~~v~~~~~D~~~~~~i~~a~~ 75 (361)
T KOG1430|consen 4 KLSVLVTG-GSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTG----FRSGRVTVILGDLLDANSISNAFQ 75 (361)
T ss_pred CCEEEEEC-CccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhc----ccCCceeEEecchhhhhhhhhhcc
Confidence 46788888 89999888853 344579999999886 444443210 012346667787776665444444
No 424
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=39.65 E-value=1.1e+02 Score=26.57 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=36.9
Q ss_pred CCCeEEEEcCCCc----HHHHHHhhcC---CCcEEEEEeC----CHHHHHHHHHhhh-hhccCCCceeEEE
Q 030823 91 TFPTALCLGGSLE----AVRRLLRGRG---GIEKLIMMDT----SYDMLKLCKDAQQ-DAHNDNIETCFVV 149 (171)
Q Consensus 91 ~~~~vLDlGcGtG----~l~~~L~~~~---~~~~v~gvD~----S~~mL~~a~~~~~-~~~~~~~~~~~~~ 149 (171)
+.-+|+|+|.|.| .+.+.|+.+. |.-+|++++. +..-++...+... .+..-++...|..
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~ 180 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHP 180 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEe
Confidence 4578999999999 3455555432 3349999999 7777776655432 1223455555543
No 425
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.65 E-value=68 Score=24.42 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhcc--cCCCeEEEEcCCCcHHH-------HHHhhcCCCcEEEEEe
Q 030823 74 VDAVAENLLDRLEDCR--KTFPTALCLGGSLEAVR-------RLLRGRGGIEKLIMMD 122 (171)
Q Consensus 74 ~~~va~~l~~rL~~i~--~~~~~vLDlGcGtG~l~-------~~L~~~~~~~~v~gvD 122 (171)
.+..+..+.+.+...- .+..+|+-+ ||.|+.+ ++|...+..-.|+.+.
T Consensus 5 ME~Ag~~~a~~i~~~~~~~~~~~v~il-~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~ 61 (169)
T PF03853_consen 5 MENAGRAIAELIRKLFGSPKGPRVLIL-CGPGNNGGDGLVAARHLANRGYNVTVYLVG 61 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCCTT-EEEEE-E-SSHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEE-ECCCCChHHHHHHHHHHHHCCCeEEEEEEe
Confidence 3444444444333322 445677777 7888653 6665544222333353
No 426
>PRK06953 short chain dehydrogenase; Provisional
Probab=39.51 E-value=1.7e+02 Score=22.37 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=21.0
Q ss_pred eEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030823 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (171)
Q Consensus 94 ~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a 131 (171)
++|-.|+..| .+++.|.+. ..+|+.++.+++-++..
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~--G~~v~~~~r~~~~~~~~ 41 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRAD--GWRVIATARDAAALAAL 41 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhC--CCEEEEEECCHHHHHHH
Confidence 4676775543 233444442 35888888887665543
No 427
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=39.36 E-value=78 Score=26.03 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=27.7
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+|.-||+|. +.++..++..+ .+|+.+|.+++.++.+.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~ 44 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAME 44 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHH
Confidence 5688888873 34455555533 589999999999987644
No 428
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=38.89 E-value=28 Score=31.41 Aligned_cols=50 Identities=12% Similarity=-0.025 Sum_probs=41.0
Q ss_pred HHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823 83 DRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (171)
Q Consensus 83 ~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~ 134 (171)
+|+...-.++..|-|+-||-|-+...+... .-.|++.|+.++|++..+..
T Consensus 241 erlsg~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~n 290 (495)
T KOG2078|consen 241 ERLSGLFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKAN 290 (495)
T ss_pred HHHhhccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHh
Confidence 556666677889999999999998877763 37999999999999998653
No 429
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=38.80 E-value=75 Score=26.85 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=29.7
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
++.++||-.|+|. |.++..+++.....+|+++|.+++-++.+++
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 3457888888643 3344445554334479999999998888864
No 430
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=38.79 E-value=1.9e+02 Score=22.58 Aligned_cols=75 Identities=8% Similarity=-0.104 Sum_probs=41.0
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----C
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~ 158 (171)
+..++|-.|++ |.++..+.+.. ...+|+.++.+++-++...+... ..+.++.++.+|..... + .
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR---AAGGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 45778888854 44554443211 23689999998876655433221 12334555666654321 0 0
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|.|+.++
T Consensus 86 ~~~id~vi~~a 96 (256)
T PRK06124 86 HGRLDILVNNV 96 (256)
T ss_pred cCCCCEEEECC
Confidence 13567777664
No 431
>PRK06182 short chain dehydrogenase; Validated
Probab=38.36 E-value=88 Score=24.93 Aligned_cols=67 Identities=13% Similarity=-0.094 Sum_probs=36.7
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----CC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----ER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~~ 160 (171)
.++|-.|++.| ++..+.+.. ...+|++++-+++-++...+ .+ +.++.+|..... +. .+
T Consensus 4 k~vlItGasgg-iG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-------~~--~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 4 KVALVTGASSG-IGKATARRLAAQGYTVYGAARRVDKMEDLAS-------LG--VHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-------CC--CeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 56888885444 555553311 23588888888765543321 12 444556654321 10 13
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
.+|+|+.++
T Consensus 74 ~id~li~~a 82 (273)
T PRK06182 74 RIDVLVNNA 82 (273)
T ss_pred CCCEEEECC
Confidence 678888775
No 432
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=38.04 E-value=1.3e+02 Score=25.33 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=26.5
Q ss_pred cCCCeEEEEcCCC-cHH-HHHHhhcCCCcEEEEEeCCHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAV-RRLLRGRGGIEKLIMMDTSYDMLKL 130 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l-~~~L~~~~~~~~v~gvD~S~~mL~~ 130 (171)
+...+|.-+|+|. |.. +..|...+-..++..+|+.++.+..
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g 46 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEG 46 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHH
Confidence 4457999999955 332 2223333344589999998876644
No 433
>PLN02650 dihydroflavonol-4-reductase
Probab=37.99 E-value=1.2e+02 Score=25.40 Aligned_cols=75 Identities=13% Similarity=-0.088 Sum_probs=41.1
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCC-C--CCccc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPL-K--ERYAC 163 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf-~--~~sfD 163 (171)
...+||-.| |+|.++.+|.+.. ...+|++++.++..+....... ...+ ..+.++.+|...... . -..+|
T Consensus 4 ~~k~iLVTG-atGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d 79 (351)
T PLN02650 4 QKETVCVTG-ASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLL---DLPGATTRLTLWKADLAVEGSFDDAIRGCT 79 (351)
T ss_pred CCCEEEEeC-CcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHH---hccCCCCceEEEEecCCChhhHHHHHhCCC
Confidence 346788777 7888887775422 2358888877654443322110 0111 235667777654321 0 12468
Q ss_pred eEEEec
Q 030823 164 RFFVLA 169 (171)
Q Consensus 164 lV~s~~ 169 (171)
.|+.+|
T Consensus 80 ~ViH~A 85 (351)
T PLN02650 80 GVFHVA 85 (351)
T ss_pred EEEEeC
Confidence 888765
No 434
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=37.70 E-value=78 Score=25.94 Aligned_cols=38 Identities=11% Similarity=-0.040 Sum_probs=27.3
Q ss_pred eEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 94 ~vLDlGcGt--G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
+|.-||+|. |.++..|.+. ..+|+++|.+++.++.+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 466777764 4566666553 2589999999998888754
No 435
>PRK08507 prephenate dehydrogenase; Validated
Probab=37.37 E-value=88 Score=25.48 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=26.5
Q ss_pred eEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 94 ~vLDlGcGt--G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
+|.-||+|. |.++..|.+.+...+|+++|.+++-++.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~ 43 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE 43 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence 466777664 4455555554333479999999988777653
No 436
>PRK06181 short chain dehydrogenase; Provisional
Probab=37.02 E-value=1.5e+02 Score=23.26 Aligned_cols=73 Identities=15% Similarity=0.032 Sum_probs=38.2
Q ss_pred CeEEEEcCCCcHHHHHHhhc--CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----CC
Q 030823 93 PTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----ER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~--~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~~ 160 (171)
.++|-.|+ +|.++..+.+. ....+|+.++.+++-++...+... ..+..+.++.+|..... +. -+
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELA---DHGGEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35777774 45455544321 023589999988765544332211 12234555666654431 00 13
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
..|.|+.++
T Consensus 78 ~id~vi~~a 86 (263)
T PRK06181 78 GIDILVNNA 86 (263)
T ss_pred CCCEEEECC
Confidence 578888775
No 437
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=36.99 E-value=2.1e+02 Score=22.57 Aligned_cols=74 Identities=9% Similarity=-0.111 Sum_probs=37.2
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEe-CCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----------C
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMD-TSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD-~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----------f 157 (171)
..++|-.|++.| .++..|.+. ..+|+.+. .+++-++...+... ...+.++.++.+|..... -
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQS--GVNIAFTYNSNVEEANKIAEDLE--QKYGIKAKAYPLNILEPETYKELFKKIDE 83 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHH--HhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 357888886665 234444443 35777664 34444433222111 012334556666655421 0
Q ss_pred CCCccceEEEec
Q 030823 158 KERYACRFFVLA 169 (171)
Q Consensus 158 ~~~sfDlV~s~~ 169 (171)
.-+.+|+++.++
T Consensus 84 ~~g~id~lv~nA 95 (260)
T PRK08416 84 DFDRVDFFISNA 95 (260)
T ss_pred hcCCccEEEECc
Confidence 114678888776
No 438
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=36.79 E-value=92 Score=27.28 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=29.9
Q ss_pred cCCCeEEEEcCCCcHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSLEAVR-RLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~-~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
++..+|.-+|||.=-++ ..=+......+|+++|+.++-++.|++
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 45567777877753232 222333356799999999999999975
No 439
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=36.58 E-value=1.7e+02 Score=27.33 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=49.2
Q ss_pred CeEEEEcCCCcHHHHHHhh---cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC-----CCCCCccce
Q 030823 93 PTALCLGGSLEAVRRLLRG---RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-----PLKERYACR 164 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~---~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-----Pf~~~sfDl 164 (171)
.+||-=| |+|+++..+.+ ....++++.+|.+|.-+..-...... ..+..+..++.||.... .+.+-..|+
T Consensus 251 K~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~-~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 251 KTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELRE-KFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHh-hCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence 4666665 88988887754 23568999999999777665443211 11235667778877654 355567888
Q ss_pred EEEec
Q 030823 165 FFVLA 169 (171)
Q Consensus 165 V~s~~ 169 (171)
|+..|
T Consensus 329 VfHAA 333 (588)
T COG1086 329 VFHAA 333 (588)
T ss_pred EEEhh
Confidence 87654
No 440
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.13 E-value=54 Score=22.74 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=11.1
Q ss_pred CeEEEEcCCCcHHHHHHh
Q 030823 93 PTALCLGGSLEAVRRLLR 110 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~ 110 (171)
.+|| +-||+|.-+..+.
T Consensus 4 ~~IL-l~C~~G~sSS~l~ 20 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLV 20 (95)
T ss_pred cEEE-EECCCchhHHHHH
Confidence 3555 5699996666554
No 441
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.00 E-value=2.4e+02 Score=23.08 Aligned_cols=73 Identities=14% Similarity=-0.088 Sum_probs=38.2
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCC-HHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC----
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTS-YDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S-~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~---- 158 (171)
..++|-.|++.| .++..|.+. ..+|+.+|.+ ++-++...+.. ...+.++.++.+|..... ++
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~--Ga~Vv~~~~~~~~~~~~~~~~i---~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARL--GATVVVNDVASALDASDVLDEI---RAAGAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEecCCchhHHHHHHHHH---HhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 367888887765 233444443 3588888864 23333322211 112334555666654320 00
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|+++.++
T Consensus 87 ~g~iD~li~nA 97 (306)
T PRK07792 87 LGGLDIVVNNA 97 (306)
T ss_pred hCCCCEEEECC
Confidence 15688888775
No 442
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=35.96 E-value=1.9e+02 Score=22.58 Aligned_cols=75 Identities=9% Similarity=-0.090 Sum_probs=38.7
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----CCC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-----~~~ 160 (171)
.++|-.|+ +|.++..+.+.. ...+|+.+|.+++-++...+.... .....++.++.+|..... + .-+
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINA-EYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-hcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46788884 455554443211 235899999887665544322110 001123555666654321 0 014
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
..|.|+.++
T Consensus 81 ~id~vv~~a 89 (259)
T PRK12384 81 RVDLLVYNA 89 (259)
T ss_pred CCCEEEECC
Confidence 678887765
No 443
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=35.90 E-value=72 Score=26.30 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
+.+++|-+|||. |.++..+++......|+++|..++.++.+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence 456789888753 445555665444556888999988887764
No 444
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=35.67 E-value=1.2e+02 Score=20.31 Aligned_cols=10 Identities=0% Similarity=-0.207 Sum_probs=6.5
Q ss_pred CCCcHHHHHH
Q 030823 100 GSLEAVRRLL 109 (171)
Q Consensus 100 cGtG~l~~~L 109 (171)
||+|.-+..+
T Consensus 7 Cg~G~gtS~m 16 (87)
T cd05567 7 CDAGMGSSAM 16 (87)
T ss_pred CCCCccHHHH
Confidence 7777665555
No 445
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=35.64 E-value=21 Score=31.32 Aligned_cols=76 Identities=11% Similarity=-0.050 Sum_probs=51.3
Q ss_pred cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh----ccCCC---ceeEEEccCCCCCCC-CCc
Q 030823 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA----HNDNI---ETCFVVGDEEFLPLK-ERY 161 (171)
Q Consensus 90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~----~~~~~---~~~~~~~D~e~LPf~-~~s 161 (171)
++.+.|.|-=-|||.+...-+.-+ +-|+|.|+.-.|+...+....+. ..-+. -+..+.+|...-|+- .-.
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred CCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 567889999999999887666633 79999999999998543211100 01111 123466888887764 458
Q ss_pred cceEEE
Q 030823 162 ACRFFV 167 (171)
Q Consensus 162 fDlV~s 167 (171)
||.|++
T Consensus 285 fDaIvc 290 (421)
T KOG2671|consen 285 FDAIVC 290 (421)
T ss_pred eeEEEe
Confidence 999987
No 446
>PRK08628 short chain dehydrogenase; Provisional
Probab=35.51 E-value=1.6e+02 Score=23.02 Aligned_cols=71 Identities=10% Similarity=-0.027 Sum_probs=37.8
Q ss_pred CCeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC----
Q 030823 92 FPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~---- 158 (171)
..++|-.|++ |.++..+ .+. ..+++.++.+++-++...+.. ..+.++.++.+|..... +.
T Consensus 7 ~~~ilItGas-ggiG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 7 DKVVIVTGGA-SGIGAAISLRLAEE--GAIPVIFGRSAPDDEFAEELR----ALQPRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHc--CCcEEEEcCChhhHHHHHHHH----hcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3577888754 4454444 443 357787887776553322211 12334556666654321 11
Q ss_pred -CCccceEEEec
Q 030823 159 -ERYACRFFVLA 169 (171)
Q Consensus 159 -~~sfDlV~s~~ 169 (171)
-+.+|.|+.++
T Consensus 80 ~~~~id~vi~~a 91 (258)
T PRK08628 80 KFGRIDGLVNNA 91 (258)
T ss_pred hcCCCCEEEECC
Confidence 14678888775
No 447
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=35.49 E-value=54 Score=23.13 Aligned_cols=50 Identities=10% Similarity=-0.152 Sum_probs=28.2
Q ss_pred EcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823 98 LGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL 168 (171)
Q Consensus 98 lGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~ 168 (171)
+-||+|..+..+.+ .|-+.+++ .++++.........++-.-+.+|+|+..
T Consensus 5 l~C~~GaSSs~la~--------------km~~~a~~-------~gi~~~i~a~~~~e~~~~~~~~Dvill~ 54 (99)
T cd05565 5 VLCAGGGTSGLLAN--------------ALNKGAKE-------RGVPLEAAAGAYGSHYDMIPDYDLVILA 54 (99)
T ss_pred EECCCCCCHHHHHH--------------HHHHHHHH-------CCCcEEEEEeeHHHHHHhccCCCEEEEc
Confidence 56899955555543 33344433 4555555555555555445567877653
No 448
>PRK06484 short chain dehydrogenase; Validated
Probab=35.25 E-value=1.5e+02 Score=26.25 Aligned_cols=70 Identities=10% Similarity=-0.040 Sum_probs=38.4
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~----- 158 (171)
..++|-.|++.| .+++.|.+. ..+|+.++.+++-++...+. .+.++.++.+|..... +.
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARA--GDQVVVADRNVERARERADS------LGPDHHALAMDVSDEAQIREGFEQLHRE 76 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHH------hCCceeEEEeccCCHHHHHHHHHHHHHH
Confidence 457788887766 334444443 36888888877766554331 1223444555543221 00
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|+++.++
T Consensus 77 ~g~iD~li~na 87 (520)
T PRK06484 77 FGRIDVLVNNA 87 (520)
T ss_pred hCCCCEEEECC
Confidence 14678887765
No 449
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=35.24 E-value=2.1e+02 Score=22.17 Aligned_cols=40 Identities=13% Similarity=0.045 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHH
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLC 131 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a 131 (171)
+..++|-.|+ +|.++..+.+.. ...+|+++|.+++-+...
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~ 52 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAV 52 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Confidence 3468898985 555555443211 235899999987655444
No 450
>PRK06701 short chain dehydrogenase; Provisional
Probab=35.09 E-value=1.4e+02 Score=24.35 Aligned_cols=72 Identities=13% Similarity=0.051 Sum_probs=36.9
Q ss_pred CCeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHH-HHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC---
Q 030823 92 FPTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYD-MLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK--- 158 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~----L~~~~~~~~v~gvD~S~~-mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~--- 158 (171)
..++|-.|++.| ++.. |.+. ..+|+.++.+++ .++...+... ..+.++.++.+|..... +.
T Consensus 46 ~k~iLItGasgg-IG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 46 GKVALITGGDSG-IGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVE---KEGVKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHH---hcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 357888886554 4444 4443 367888877642 2222222111 12334556667654321 11
Q ss_pred --CCccceEEEec
Q 030823 159 --ERYACRFFVLA 169 (171)
Q Consensus 159 --~~sfDlV~s~~ 169 (171)
-+.+|+|+.++
T Consensus 120 ~~~~~iD~lI~~A 132 (290)
T PRK06701 120 RELGRLDILVNNA 132 (290)
T ss_pred HHcCCCCEEEECC
Confidence 13578888765
No 451
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=34.64 E-value=1.3e+02 Score=27.96 Aligned_cols=72 Identities=17% Similarity=0.063 Sum_probs=42.8
Q ss_pred CCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCH--HHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCC
Q 030823 92 FPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSY--DMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKER 160 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~S~--~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~ 160 (171)
..+||-.| |||.++.+|.+ .+...+|+++|..+ .-+...... ....++.++.+|..... +...
T Consensus 6 ~~~VLVTG-atGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~-----~~~~~v~~~~~Dl~d~~~~~~~~~~~ 79 (668)
T PLN02260 6 PKNILITG-AAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPS-----KSSPNFKFVKGDIASADLVNYLLITE 79 (668)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhc-----ccCCCeEEEECCCCChHHHHHHHhhc
Confidence 46889888 88988887754 22345899998642 111111100 11234677888876532 2335
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
.+|+|+.+|
T Consensus 80 ~~D~ViHlA 88 (668)
T PLN02260 80 GIDTIMHFA 88 (668)
T ss_pred CCCEEEECC
Confidence 789998765
No 452
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=34.43 E-value=1.5e+02 Score=25.58 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
+..+++++.+-+|+.+...+.--++-+.-|+|.....|...+ -.|+|+|=+-+|.+.-+
T Consensus 231 PYl~~I~~~Vk~rl~~~~~~~vPmi~fakG~g~~Le~l~~tG--~DVvgLDWTvdp~ear~ 289 (359)
T KOG2872|consen 231 PYLRQIAEAVKKRLPELGLAPVPMILFAKGSGGALEELAQTG--YDVVGLDWTVDPAEARR 289 (359)
T ss_pred HHHHHHHHHHHHhhhhhcCCCCceEEEEcCcchHHHHHHhcC--CcEEeecccccHHHHHH
Confidence 445678888888888764433334556689999999999854 69999999888877654
No 453
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=34.39 E-value=1.3e+02 Score=24.74 Aligned_cols=76 Identities=7% Similarity=-0.237 Sum_probs=39.8
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-C--CCccceEE
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-K--ERYACRFF 166 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf-~--~~sfDlV~ 166 (171)
..+||-.| |+|.++..+.+.. ...+|++++.+++........... .....++.++.+|...... . -..+|.|+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLAL-DGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhc-cCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 36788888 6777776665421 235787776655433322111100 0011246667777654321 0 12478888
Q ss_pred Eec
Q 030823 167 VLA 169 (171)
Q Consensus 167 s~~ 169 (171)
.+|
T Consensus 83 h~A 85 (325)
T PLN02989 83 HTA 85 (325)
T ss_pred EeC
Confidence 876
No 454
>PRK05693 short chain dehydrogenase; Provisional
Probab=33.64 E-value=1.5e+02 Score=23.54 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=20.6
Q ss_pred eEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHH
Q 030823 94 TALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLC 131 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a 131 (171)
++|-.|++ |.++..+.+.. ...+|++++.+++-++..
T Consensus 3 ~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (274)
T PRK05693 3 VVLITGCS-SGIGRALADAFKAAGYEVWATARKAEDVEAL 41 (274)
T ss_pred EEEEecCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56777754 44444443211 235788888877655443
No 455
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=33.58 E-value=1.9e+02 Score=24.05 Aligned_cols=71 Identities=14% Similarity=-0.007 Sum_probs=39.5
Q ss_pred CeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCccceE
Q 030823 93 PTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERYACRF 165 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f~--~~sfDlV 165 (171)
.+||-.| |+|.++..+.+ .+...+|+++|.++.-.....+. ....++.++.+|..... +. -..+|.|
T Consensus 5 k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~-----~~~~~~~~v~~Dl~d~~~l~~~~~~iD~V 78 (324)
T TIGR03589 5 KSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK-----FPAPCLRFFIGDVRDKERLTRALRGVDYV 78 (324)
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHH-----hCCCcEEEEEccCCCHHHHHHHHhcCCEE
Confidence 5788887 57877776654 22235788888765433222111 11224566777765432 10 1247888
Q ss_pred EEec
Q 030823 166 FVLA 169 (171)
Q Consensus 166 ~s~~ 169 (171)
+.++
T Consensus 79 ih~A 82 (324)
T TIGR03589 79 VHAA 82 (324)
T ss_pred EECc
Confidence 8765
No 456
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=33.18 E-value=65 Score=27.92 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=25.8
Q ss_pred CCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823 91 TFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 91 ~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
+..+|+-+|+| .|..+...+.... .+|+.+|.+++-++.+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLD 207 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHH
Confidence 44679999887 2333333333222 47999999987766654
No 457
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.02 E-value=2.9e+02 Score=23.04 Aligned_cols=74 Identities=24% Similarity=0.143 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------CCC-
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKE- 159 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--------f~~- 159 (171)
..++|--|.-+| .+++.|+++ ..+++.+--+++-|....+.... ..++++..+..|..... +..
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~--g~~liLvaR~~~kL~~la~~l~~--~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARR--GYNLILVARREDKLEALAKELED--KTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCcHHHHHHHHHHHHH--hhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 367888887777 345555653 47999999999988887655431 23456666777765442 112
Q ss_pred -CccceEEEec
Q 030823 160 -RYACRFFVLA 169 (171)
Q Consensus 160 -~sfDlV~s~~ 169 (171)
..+|+.+.||
T Consensus 82 ~~~IdvLVNNA 92 (265)
T COG0300 82 GGPIDVLVNNA 92 (265)
T ss_pred CCcccEEEECC
Confidence 3789988886
No 458
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=33.00 E-value=1.1e+02 Score=24.81 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=21.7
Q ss_pred CeEEEEcCC-Cc-HHHHHHhhcCCCcEEEEEeCC
Q 030823 93 PTALCLGGS-LE-AVRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 93 ~~vLDlGcG-tG-~l~~~L~~~~~~~~v~gvD~S 124 (171)
.+|+-+||| .| .++..|... .+++++.+|..
T Consensus 33 ~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D 65 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFD 65 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 789999997 34 345555543 57899998864
No 459
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=32.88 E-value=79 Score=25.11 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=23.3
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030823 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~gvD~S 124 (171)
.+|+-+|||. | .++..|... .+++++.+|..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 6899999984 4 455666554 56899999987
No 460
>PRK06101 short chain dehydrogenase; Provisional
Probab=32.82 E-value=2.4e+02 Score=21.95 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=18.7
Q ss_pred eEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHH
Q 030823 94 TALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLC 131 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a 131 (171)
++|-.|+ +|.++..+.+.. ...+|+.++.+++.++..
T Consensus 3 ~vlItGa-s~giG~~la~~L~~~G~~V~~~~r~~~~~~~~ 41 (240)
T PRK06101 3 AVLITGA-TSGIGKQLALDYAKQGWQVIACGRNQSVLDEL 41 (240)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 4565664 344444433211 235677777776655443
No 461
>PLN02827 Alcohol dehydrogenase-like
Probab=32.82 E-value=1.1e+02 Score=26.16 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=28.7
Q ss_pred cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
.+..+||-.|+|+ |.++..+++......|+++|.+++-++.+++
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 3568899888642 2333334443344579999999988888754
No 462
>PRK08303 short chain dehydrogenase; Provisional
Probab=32.67 E-value=1.8e+02 Score=24.04 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCC
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S 124 (171)
..++|-.|++.| .+++.|.+. ..+|+.++.+
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~--G~~Vv~~~r~ 41 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAA--GATVYVTGRS 41 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEecc
Confidence 357888887666 223344442 3578887765
No 463
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=32.32 E-value=2.4e+02 Score=21.95 Aligned_cols=69 Identities=17% Similarity=-0.001 Sum_probs=35.2
Q ss_pred eEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----CCc
Q 030823 94 TALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----ERY 161 (171)
Q Consensus 94 ~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~~s 161 (171)
++|-.|+ +|.++..+.+.. ...+|++++.+++-++...+. .+.++.++.+|..... +. -+.
T Consensus 2 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 74 (248)
T PRK10538 2 IVLVTGA-TAGFGECITRRFIQQGHKVIATGRRQERLQELKDE------LGDNLYIAQLDVRNRAAIEEMLASLPAEWRN 74 (248)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH------hccceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4666764 444444443211 235888888887766554321 1223445556554321 00 135
Q ss_pred cceEEEec
Q 030823 162 ACRFFVLA 169 (171)
Q Consensus 162 fDlV~s~~ 169 (171)
.|.|+.++
T Consensus 75 id~vi~~a 82 (248)
T PRK10538 75 IDVLVNNA 82 (248)
T ss_pred CCEEEECC
Confidence 77777664
No 464
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.17 E-value=1.3e+02 Score=24.95 Aligned_cols=40 Identities=10% Similarity=0.228 Sum_probs=28.2
Q ss_pred CCeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 92 FPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 92 ~~~vLDlGcGt--G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
..+|.-||+|. +.++..|... ..+|+++|.+++-++.+.+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARG 45 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 46788888874 3445555553 2589999999988887754
No 465
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.04 E-value=67 Score=22.15 Aligned_cols=14 Identities=21% Similarity=0.015 Sum_probs=9.3
Q ss_pred EcCCCcHHHHHHhh
Q 030823 98 LGGSLEAVRRLLRG 111 (171)
Q Consensus 98 lGcGtG~l~~~L~~ 111 (171)
+-||+|.-+..+.+
T Consensus 4 ~~Cg~G~sTS~~~~ 17 (96)
T cd05564 4 LVCSAGMSTSILVK 17 (96)
T ss_pred EEcCCCchHHHHHH
Confidence 45888877665543
No 466
>PRK07791 short chain dehydrogenase; Provisional
Probab=31.84 E-value=2.6e+02 Score=22.67 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCH
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSY 125 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~ 125 (171)
..++|-.|++.| .+...|.+. ..+|+.+|...
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~--G~~vii~~~~~ 40 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAE--GARVVVNDIGV 40 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEeeCCc
Confidence 357888887666 233344443 35777777653
No 467
>PRK06179 short chain dehydrogenase; Provisional
Probab=31.83 E-value=1.1e+02 Score=24.23 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=20.5
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHH
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDM 127 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~m 127 (171)
.++|-.|+ +|.++..+.+.. ...+|+.++.+++-
T Consensus 5 ~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~ 40 (270)
T PRK06179 5 KVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPAR 40 (270)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 46788884 555665554311 23578888877543
No 468
>PRK06484 short chain dehydrogenase; Validated
Probab=31.73 E-value=1.9e+02 Score=25.60 Aligned_cols=69 Identities=17% Similarity=0.027 Sum_probs=39.6
Q ss_pred CeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----C
Q 030823 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----E 159 (171)
Q Consensus 93 ~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~ 159 (171)
.++|-.|++.| .+.+.|.+. ..+|+.++.+++-++...+. .+.+...+.+|..... +. -
T Consensus 270 k~~lItGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 341 (520)
T PRK06484 270 RVVAITGGARGIGRAVADRFAAA--GDRLLIIDRDAEGAKKLAEA------LGDEHLSVQADITDEAAVESAFAQIQARW 341 (520)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHH------hCCceeEEEccCCCHHHHHHHHHHHHHHc
Confidence 46787886665 333444443 36899999988776665432 1223334555543321 11 1
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|+++.|+
T Consensus 342 g~id~li~nA 351 (520)
T PRK06484 342 GRLDVLVNNA 351 (520)
T ss_pred CCCCEEEECC
Confidence 5689988875
No 469
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=31.70 E-value=62 Score=22.58 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=25.6
Q ss_pred CCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 101 SLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 101 GtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
|.|.++..+++... .+|+++|.+++-++.+++
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh
Confidence 35777777776544 899999999999988875
No 470
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=31.69 E-value=70 Score=29.27 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=42.4
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCH----HHHHHHHHhhhhhccCCCceeEEEcc-CCCCCCCCCccceE
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY----DMLKLCKDAQQDAHNDNIETCFVVGD-EEFLPLKERYACRF 165 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~----~mL~~a~~~~~~~~~~~~~~~~~~~D-~e~LPf~~~sfDlV 165 (171)
....|+|...|.|.++..|... .|+.+-.-+ .-|..--+ +|. .-+..| .|.++.-+.++|||
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~----~VWVMNVVP~~~~ntL~vIyd-------RGL--IG~yhDWCE~fsTYPRTYDLl 431 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD----PVWVMNVVPVSGPNTLPVIYD-------RGL--IGVYHDWCEAFSTYPRTYDLL 431 (506)
T ss_pred ceeeeeeecccccHHHHHhccC----CceEEEecccCCCCcchhhhh-------ccc--chhccchhhccCCCCcchhhe
Confidence 4578999999999999999863 244444433 22222211 221 012234 47888889999999
Q ss_pred EEecc
Q 030823 166 FVLAL 170 (171)
Q Consensus 166 ~s~~~ 170 (171)
-++.|
T Consensus 432 HA~~l 436 (506)
T PF03141_consen 432 HADGL 436 (506)
T ss_pred ehhhh
Confidence 87754
No 471
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=31.64 E-value=68 Score=26.51 Aligned_cols=34 Identities=15% Similarity=-0.015 Sum_probs=25.8
Q ss_pred CeEEEEcCCCc-HHHHHHhhcCCCcEEEEEeCCHH
Q 030823 93 PTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYD 126 (171)
Q Consensus 93 ~~vLDlGcGtG-~l~~~L~~~~~~~~v~gvD~S~~ 126 (171)
.+||-+|+|++ .+.+.|.+.+..-+|+++|.++.
T Consensus 2 ~~vLv~g~~~~~~~~~~l~~~~~g~~vi~~d~~~~ 36 (326)
T PRK12767 2 MNILVTSAGRRVQLVKALKKSLLKGRVIGADISEL 36 (326)
T ss_pred ceEEEecCCccHHHHHHHHHhccCCEEEEECCCCc
Confidence 47999999999 46777776543468999998753
No 472
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=31.44 E-value=95 Score=28.88 Aligned_cols=70 Identities=17% Similarity=0.100 Sum_probs=42.6
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC---CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CC--CCccc
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LK--ERYAC 163 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~---~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~--~~sfD 163 (171)
+.++||-.| |+|.++.+|.+.. ...+|+++|..+...... ....++.++.+|..... +. -..+|
T Consensus 314 ~~~~VLVTG-atGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~--------~~~~~~~~~~gDl~d~~~~l~~~l~~~D 384 (660)
T PRK08125 314 RRTRVLILG-VNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRF--------LGHPRFHFVEGDISIHSEWIEYHIKKCD 384 (660)
T ss_pred cCCEEEEEC-CCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhh--------cCCCceEEEeccccCcHHHHHHHhcCCC
Confidence 346899888 8999988886532 125999999866433221 01124667778875321 11 13578
Q ss_pred eEEEec
Q 030823 164 RFFVLA 169 (171)
Q Consensus 164 lV~s~~ 169 (171)
.|+.+|
T Consensus 385 ~ViHlA 390 (660)
T PRK08125 385 VVLPLV 390 (660)
T ss_pred EEEECc
Confidence 888654
No 473
>PRK08177 short chain dehydrogenase; Provisional
Probab=31.22 E-value=2e+02 Score=22.03 Aligned_cols=34 Identities=21% Similarity=0.034 Sum_probs=17.8
Q ss_pred eEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHH
Q 030823 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLK 129 (171)
Q Consensus 94 ~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~ 129 (171)
++|-.|+..| .+++.|.+. ..+|+.++.+++-+.
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~ 39 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLER--GWQVTATVRGPQQDT 39 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhC--CCEEEEEeCCCcchH
Confidence 4666665333 133334443 247777777654443
No 474
>PRK08226 short chain dehydrogenase; Provisional
Probab=30.97 E-value=2.6e+02 Score=21.87 Aligned_cols=73 Identities=22% Similarity=0.096 Sum_probs=38.2
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----C
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----E 159 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~ 159 (171)
..++|-.|+. |.++..+.+.. ...+|+.++.+++..+...+.. ..+.++.++.+|..... +. -
T Consensus 6 ~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 6 GKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADELC----GRGHRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH----HhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3577888754 44544443211 2357888888876443333211 12334555666654321 00 1
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+..|+|+.++
T Consensus 81 ~~id~vi~~a 90 (263)
T PRK08226 81 GRIDILVNNA 90 (263)
T ss_pred CCCCEEEECC
Confidence 3578887765
No 475
>PRK07201 short chain dehydrogenase; Provisional
Probab=30.94 E-value=2e+02 Score=26.28 Aligned_cols=73 Identities=11% Similarity=-0.038 Sum_probs=41.9
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----CC
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----ER 160 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~~ 160 (171)
.++|-.|++ |.++..+.+.. ...+|+.++.+++-++...+... ..+.++.++.+|..... +. -+
T Consensus 372 k~vlItGas-~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 372 KVVLITGAS-SGIGRATAIKVAEAGATVFLVARNGEALDELVAEIR---AKGGTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 568888754 44555554311 23689999998877665543221 12334556666655331 10 13
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
..|+++.++
T Consensus 448 ~id~li~~A 456 (657)
T PRK07201 448 HVDYLVNNA 456 (657)
T ss_pred CCCEEEECC
Confidence 588888876
No 476
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.94 E-value=1.4e+02 Score=22.95 Aligned_cols=73 Identities=11% Similarity=0.009 Sum_probs=38.6
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEE-eCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----C
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMM-DTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----E 159 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gv-D~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-----~ 159 (171)
.++|-.| |+|.++..+.+.. ...+++.+ +.+++-+....+... ..+.++.++.+|..... +. -
T Consensus 6 ~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 6 KVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIK---EEGGDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4677777 5666666554321 23577777 877665544332211 12234556666665431 10 1
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
+.+|+|+.++
T Consensus 82 ~~id~vi~~a 91 (247)
T PRK05565 82 GKIDILVNNA 91 (247)
T ss_pred CCCCEEEECC
Confidence 2578888765
No 477
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=30.62 E-value=1.9e+02 Score=26.96 Aligned_cols=77 Identities=10% Similarity=-0.155 Sum_probs=42.1
Q ss_pred CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhc--cCC----CceeEEEccCCCCC-CC--CC
Q 030823 92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAH--NDN----IETCFVVGDEEFLP-LK--ER 160 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~--~~~----~~~~~~~~D~e~LP-f~--~~ 160 (171)
..+||-.| |+|.++..+.+.. ...+|++++.+++-+....+...... ..+ .++.++.+|..... +. -+
T Consensus 80 gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg 158 (576)
T PLN03209 80 EDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG 158 (576)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence 45678777 4566666654321 23689999988776554322110000 001 23567778876532 11 14
Q ss_pred ccceEEEec
Q 030823 161 YACRFFVLA 169 (171)
Q Consensus 161 sfDlV~s~~ 169 (171)
.+|+||+++
T Consensus 159 giDiVVn~A 167 (576)
T PLN03209 159 NASVVICCI 167 (576)
T ss_pred CCCEEEEcc
Confidence 689888774
No 478
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=30.39 E-value=2.4e+02 Score=22.84 Aligned_cols=75 Identities=7% Similarity=-0.190 Sum_probs=39.4
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CC--CCccceEEE
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK--ERYACRFFV 167 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f~--~~sfDlV~s 167 (171)
.+||-.| |+|.++.+|.+.. ...+|++++.++............ .....++.++.+|..... +. -..+|.|+.
T Consensus 5 ~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 5 KVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLAL-DGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhc-cCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 5788887 6888877775421 235788877654322211110000 001124667778765432 10 124788887
Q ss_pred ec
Q 030823 168 LA 169 (171)
Q Consensus 168 ~~ 169 (171)
+|
T Consensus 83 ~A 84 (322)
T PLN02662 83 TA 84 (322)
T ss_pred eC
Confidence 75
No 479
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=30.33 E-value=88 Score=24.90 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=22.5
Q ss_pred CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030823 93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~gvD~S 124 (171)
.+|+-+|||. | .++..|... .+++++.+|..
T Consensus 22 ~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D 54 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDD 54 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 6899999984 3 456666654 57899888754
No 480
>PRK06172 short chain dehydrogenase; Provisional
Probab=30.30 E-value=2.6e+02 Score=21.70 Aligned_cols=72 Identities=18% Similarity=0.040 Sum_probs=40.3
Q ss_pred CCeEEEEcCCCcHHHHH----HhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC----
Q 030823 92 FPTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~----L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~---- 158 (171)
..++|-.|++.| ++.. |.+. ..+|+.++-+++-++...+... ..+.++.++.+|..... +.
T Consensus 7 ~k~ilItGas~~-iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 7 GKVALVTGGAAG-IGRATALAFARE--GAKVVVADRDAAGGEETVALIR---EAGGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 367888886544 4444 4443 3589999988776555433221 12334556666664321 00
Q ss_pred -CCccceEEEec
Q 030823 159 -ERYACRFFVLA 169 (171)
Q Consensus 159 -~~sfDlV~s~~ 169 (171)
-+.+|.|+.++
T Consensus 81 ~~g~id~li~~a 92 (253)
T PRK06172 81 AYGRLDYAFNNA 92 (253)
T ss_pred HhCCCCEEEECC
Confidence 13578888765
No 481
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=30.24 E-value=2.6e+02 Score=24.35 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=45.4
Q ss_pred CeEEEEcCCCcHHH----HHHhhcCCCcEEEEEeC----CHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCC
Q 030823 93 PTALCLGGSLEAVR----RLLRGRGGIEKLIMMDT----SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKE 159 (171)
Q Consensus 93 ~~vLDlGcGtG~l~----~~L~~~~~~~~v~gvD~----S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~ 159 (171)
.+||-.| |.|.++ .+|.++ .-.|+++|. ..+.+.+.++.. ..+-.+.|..+|....+ |..
T Consensus 3 ~~VLVtG-gaGyiGsht~l~L~~~--gy~v~~vDNl~n~~~~sl~r~~~l~----~~~~~v~f~~~Dl~D~~~L~kvF~~ 75 (343)
T KOG1371|consen 3 KHVLVTG-GAGYIGSHTVLALLKR--GYGVVIVDNLNNSYLESLKRVRQLL----GEGKSVFFVEGDLNDAEALEKLFSE 75 (343)
T ss_pred cEEEEec-CCcceehHHHHHHHhC--CCcEEEEecccccchhHHHHHHHhc----CCCCceEEEEeccCCHHHHHHHHhh
Confidence 4677777 777543 445553 368999984 456666666532 23346778888776554 677
Q ss_pred CccceEEEec
Q 030823 160 RYACRFFVLA 169 (171)
Q Consensus 160 ~sfDlV~s~~ 169 (171)
..||.|+..|
T Consensus 76 ~~fd~V~Hfa 85 (343)
T KOG1371|consen 76 VKFDAVMHFA 85 (343)
T ss_pred cCCceEEeeh
Confidence 7899888765
No 482
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=30.22 E-value=2.7e+02 Score=21.77 Aligned_cols=73 Identities=12% Similarity=-0.078 Sum_probs=40.6
Q ss_pred CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----------CC
Q 030823 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (171)
Q Consensus 92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----------f~ 158 (171)
..++|-.|+++| .+.+.|.+. ..+++.++.+++.++...+... ..+.++.++.+|..... -.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~--G~~vv~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQ---QLGGQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 468899996655 223334443 3688888888777665433221 12234445556654321 01
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+.+|.|+.++
T Consensus 86 ~~~~d~li~~a 96 (255)
T PRK06113 86 LGKVDILVNNA 96 (255)
T ss_pred cCCCCEEEECC
Confidence 14678888765
No 483
>PRK06180 short chain dehydrogenase; Provisional
Probab=30.10 E-value=2.9e+02 Score=22.06 Aligned_cols=38 Identities=18% Similarity=-0.039 Sum_probs=23.8
Q ss_pred CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHH
Q 030823 93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLC 131 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a 131 (171)
.++|-.|++.| ++..+.+.. ...+|++++.+++.+...
T Consensus 5 ~~vlVtGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~l 44 (277)
T PRK06180 5 KTWLITGVSSG-FGRALAQAALAAGHRVVGTVRSEAARADF 44 (277)
T ss_pred CEEEEecCCCh-HHHHHHHHHHhCcCEEEEEeCCHHHHHHH
Confidence 56888886554 444443211 236899999988766554
No 484
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=29.95 E-value=36 Score=29.37 Aligned_cols=43 Identities=7% Similarity=-0.036 Sum_probs=34.8
Q ss_pred CCCeEEEEcCCCcHHHH-HHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823 91 TFPTALCLGGSLEAVRR-LLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~-~L~~~~~~~~v~gvD~S~~mL~~a~~~ 134 (171)
....|.|+=+|-|.++. .|.. .....|+++|..|..++..++.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~-agAk~V~A~EwNp~svEaLrR~ 237 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVT-AGAKTVFACEWNPWSVEALRRN 237 (351)
T ss_pred ccchhhhhhcccceEEeehhhc-cCccEEEEEecCHHHHHHHHHH
Confidence 44789999999999998 4444 3457999999999999887753
No 485
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=29.92 E-value=2.9e+02 Score=22.98 Aligned_cols=38 Identities=16% Similarity=0.012 Sum_probs=27.1
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (171)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~ 132 (171)
++|+-+|+|. |.++-.|.+.+ ..|+.++-+++.++.-+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~ 42 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQ 42 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHh
Confidence 5789999885 45566666633 58999999877666554
No 486
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=29.91 E-value=2.3e+02 Score=26.34 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=41.8
Q ss_pred CCeEEEEcCCCc-H-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceE
Q 030823 92 FPTALCLGGSLE-A-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERYACRF 165 (171)
Q Consensus 92 ~~~vLDlGcGtG-~-l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~~~sfDlV 165 (171)
.++|+-+|||.= . +.+.|.+ ..-+++.+|.+++.++.+++ .+. ..+.||..... ..-+..|+|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~-------~g~--~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRK-------FGM--KVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh-------cCC--eEEEEeCCCHHHHHhcCCCcCCEE
Confidence 367888887752 2 2333443 23589999999999998864 333 34678776553 223477777
Q ss_pred EEe
Q 030823 166 FVL 168 (171)
Q Consensus 166 ~s~ 168 (171)
++.
T Consensus 469 vv~ 471 (621)
T PRK03562 469 INA 471 (621)
T ss_pred EEE
Confidence 764
No 487
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=29.89 E-value=2.7e+02 Score=21.72 Aligned_cols=41 Identities=20% Similarity=0.055 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHH
Q 030823 91 TFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 91 ~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~ 133 (171)
...+++-+|.| .++..+.+.. ...+|+++|.+++.+....+
T Consensus 27 ~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 27 EGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 44789999987 5665554311 34699999999987776644
No 488
>PRK08862 short chain dehydrogenase; Provisional
Probab=29.23 E-value=2.8e+02 Score=21.69 Aligned_cols=73 Identities=8% Similarity=-0.112 Sum_probs=41.6
Q ss_pred CCeEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC---CC--C----CC
Q 030823 92 FPTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---LP--L----KE 159 (171)
Q Consensus 92 ~~~vLDlGcGtG~---l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~---LP--f----~~ 159 (171)
..++|-.|++.|. +...|.+. ..+|+.++.+++.++...+... ..+.++..+..|... +. + +.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~i~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARL--GATLILCDQDQSALKDTYEQCS---ALTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHH---hcCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 3578888888873 44555553 3688888888887766544321 122333344444332 21 1 01
Q ss_pred -C-ccceEEEec
Q 030823 160 -R-YACRFFVLA 169 (171)
Q Consensus 160 -~-sfDlV~s~~ 169 (171)
+ .+|+++.++
T Consensus 80 ~g~~iD~li~na 91 (227)
T PRK08862 80 FNRAPDVLVNNW 91 (227)
T ss_pred hCCCCCEEEECC
Confidence 3 688888775
No 489
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=29.09 E-value=1.5e+02 Score=24.89 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
+..+||-.|+|. |.++..+++......++++|.+++.+..+++
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 457888887643 4445555554445579999999988887754
No 490
>PRK07060 short chain dehydrogenase; Provisional
Probab=28.91 E-value=2.2e+02 Score=21.85 Aligned_cols=67 Identities=13% Similarity=-0.043 Sum_probs=36.7
Q ss_pred CCeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-CCc
Q 030823 92 FPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-ERY 161 (171)
Q Consensus 92 ~~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~-~~s 161 (171)
..++|-.|++ |.++..+ .+. ..+|+.++.+++.++...+. . ...++.+|..... +. .+.
T Consensus 9 ~~~~lItGa~-g~iG~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~------~--~~~~~~~D~~~~~~v~~~~~~~~~ 77 (245)
T PRK07060 9 GKSVLVTGAS-SGIGRACAVALAQR--GARVVAAARNAAALDRLAGE------T--GCEPLRLDVGDDAAIRAALAAAGA 77 (245)
T ss_pred CCEEEEeCCc-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHH------h--CCeEEEecCCCHHHHHHHHHHhCC
Confidence 3578878754 3344443 333 35899999988766543221 1 1334555554321 11 145
Q ss_pred cceEEEec
Q 030823 162 ACRFFVLA 169 (171)
Q Consensus 162 fDlV~s~~ 169 (171)
+|+|+.++
T Consensus 78 ~d~vi~~a 85 (245)
T PRK07060 78 FDGLVNCA 85 (245)
T ss_pred CCEEEECC
Confidence 78888775
No 491
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=28.81 E-value=2.9e+02 Score=21.72 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=22.5
Q ss_pred CeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030823 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (171)
Q Consensus 93 ~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a 131 (171)
.++|-.|++.| .+.+.|.+. ..+|+.+|.+++.++..
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~l 45 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAE--GARVAVLDKSAAGLQEL 45 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHH
Confidence 56777886544 233344443 36888888887665554
No 492
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=28.46 E-value=2.1e+02 Score=22.90 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=16.7
Q ss_pred EEEEcCCCcHHHHHHhh----cCCCcEEEEEeC
Q 030823 95 ALCLGGSLEAVRRLLRG----RGGIEKLIMMDT 123 (171)
Q Consensus 95 vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~ 123 (171)
||-.| |||.++..+.+ .++..+|+++|.
T Consensus 2 ilItG-atG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 2 ILVTG-GAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred EEEEc-CCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 45555 77777766654 222247888874
No 493
>PRK06720 hypothetical protein; Provisional
Probab=28.35 E-value=2.6e+02 Score=21.11 Aligned_cols=73 Identities=23% Similarity=0.114 Sum_probs=37.7
Q ss_pred CCeEEEEcCCCcH---HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC---------C-C
Q 030823 92 FPTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------L-K 158 (171)
Q Consensus 92 ~~~vLDlGcGtG~---l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP---------f-~ 158 (171)
...+|-.|.+.|. +...|.+. ..+|+.+|.+++-+....+... ..+....++..|..... . .
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~--G~~V~l~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQ--GAKVIVTDIDQESGQATVEEIT---NLGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3567777765542 33444443 3688888888766554432211 12223444555543221 0 1
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+..|.++.|+
T Consensus 91 ~G~iDilVnnA 101 (169)
T PRK06720 91 FSRIDMLFQNA 101 (169)
T ss_pred cCCCCEEEECC
Confidence 14578887765
No 494
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=28.26 E-value=4.3e+02 Score=23.53 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=20.0
Q ss_pred CeEEEEcCCCcHHHHHHhh---cCCCcEEEEEeCC
Q 030823 93 PTALCLGGSLEAVRRLLRG---RGGIEKLIMMDTS 124 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L~~---~~~~~~v~gvD~S 124 (171)
.+||=+|||. ++-.+.+ ..+++.++.+|.+
T Consensus 21 s~VlliG~gg--lGsEilKNLvL~GIg~~tIvD~~ 53 (425)
T cd01493 21 AHVCLLNATA--TGTEILKNLVLPGIGSFTIVDGS 53 (425)
T ss_pred CeEEEEcCcH--HHHHHHHHHHHcCCCeEEEECCC
Confidence 7899999984 3333222 2367899999865
No 495
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.08 E-value=1.6e+02 Score=24.20 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=27.8
Q ss_pred CeEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (171)
Q Consensus 93 ~~vLDlGcGt--G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~ 134 (171)
.+|.-||+|+ +.++..++.. ..+|+.+|.+++-++.+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKER 45 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHH
Confidence 4688888874 2344445543 35899999999988887643
No 496
>PRK07831 short chain dehydrogenase; Provisional
Probab=28.07 E-value=3e+02 Score=21.61 Aligned_cols=75 Identities=15% Similarity=-0.024 Sum_probs=40.2
Q ss_pred CCeEEEEcCC-Cc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-----
Q 030823 92 FPTALCLGGS-LE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (171)
Q Consensus 92 ~~~vLDlGcG-tG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f----- 157 (171)
..++|-.|+. .| .+...|...+ .+|+.+|.+++-++...+.... .....++.++.+|..... +
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEG--ARVVISDIHERRLGETADELAA-ELGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHH-hcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 3678888853 33 2334444433 5788899887766655432210 001123555666754321 0
Q ss_pred CCCccceEEEec
Q 030823 158 KERYACRFFVLA 169 (171)
Q Consensus 158 ~~~sfDlV~s~~ 169 (171)
.-+.+|+++.++
T Consensus 94 ~~g~id~li~~a 105 (262)
T PRK07831 94 RLGRLDVLVNNA 105 (262)
T ss_pred HcCCCCEEEECC
Confidence 014678888776
No 497
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=27.96 E-value=1.6e+02 Score=24.40 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=29.7
Q ss_pred cCCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 90 ~~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
++..+||-.|+| .|..+..+++......++++|.+++.++.+++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 345788888764 23444445554445579999999988887764
No 498
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.89 E-value=1.3e+02 Score=24.62 Aligned_cols=38 Identities=8% Similarity=0.168 Sum_probs=26.7
Q ss_pred eEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (171)
Q Consensus 94 ~vLDlGcGt--G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~ 133 (171)
+|.-||+|. +.++..|... ..+|+.+|.+++.++.+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~ 42 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQ 42 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHH
Confidence 577788762 3344555553 3589999999999988754
No 499
>PRK08265 short chain dehydrogenase; Provisional
Probab=27.88 E-value=3e+02 Score=21.67 Aligned_cols=68 Identities=13% Similarity=0.036 Sum_probs=38.0
Q ss_pred CeEEEEcCCCcHHHHHH----hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CC-----
Q 030823 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----- 158 (171)
Q Consensus 93 ~~vLDlGcGtG~l~~~L----~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~----- 158 (171)
.++|-.|+..| ++..+ .+. ..+|+.+|.+++-++...+. .+.++.++.+|..... +.
T Consensus 7 k~vlItGas~g-IG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 7 KVAIVTGGATL-IGAAVARALVAA--GARVAIVDIDADNGAAVAAS------LGERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CEEEEECCCCh-HHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHH------hCCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 57888885544 44444 443 35899999887655444321 1223555666654331 10
Q ss_pred CCccceEEEec
Q 030823 159 ERYACRFFVLA 169 (171)
Q Consensus 159 ~~sfDlV~s~~ 169 (171)
-+..|.++.++
T Consensus 78 ~g~id~lv~~a 88 (261)
T PRK08265 78 FGRVDILVNLA 88 (261)
T ss_pred hCCCCEEEECC
Confidence 13578888765
No 500
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=27.86 E-value=1.2e+02 Score=25.19 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=23.1
Q ss_pred CCeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCC
Q 030823 92 FPTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTS 124 (171)
Q Consensus 92 ~~~vLDlGcGt-G-~l~~~L~~~~~~~~v~gvD~S 124 (171)
..+|+-+|||. | ..+..|+.. .+++++.+|..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALART-GIGAITLIDMD 63 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 36899999993 4 445566553 57899999975
Done!