Query 030825
Match_columns 171
No_of_seqs 152 out of 529
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fi9_A Outer membrane protein; 100.0 1.6E-42 5.5E-47 265.4 14.9 123 44-167 5-127 (128)
2 2fvt_A Conserved hypothetical 100.0 1.6E-42 5.6E-47 267.9 11.8 117 52-168 11-127 (135)
3 2gm2_A Conserved hypothetical 100.0 1.1E-41 3.7E-46 262.3 13.5 119 48-168 5-124 (132)
4 3cpk_A Uncharacterized protein 100.0 3.7E-40 1.3E-44 258.7 14.3 122 48-169 5-149 (150)
5 2ab1_A Hypothetical protein; H 100.0 3.6E-39 1.2E-43 245.3 13.9 111 54-166 3-120 (122)
6 2cyj_A Hypothetical protein PH 100.0 2.6E-35 8.8E-40 222.9 7.9 106 55-165 1-115 (118)
7 1ihn_A Hypothetical protein MT 100.0 3.2E-33 1.1E-37 210.1 4.8 100 55-165 2-110 (113)
8 3md9_A Hemin-binding periplasm 55.9 19 0.00064 27.9 5.3 35 104-142 55-89 (255)
9 1kjn_A MTH0777; hypotethical p 53.4 8.7 0.0003 29.8 2.8 48 111-158 10-59 (157)
10 3kkj_A Amine oxidase, flavin-c 53.2 8.5 0.00029 27.6 2.6 31 109-143 3-33 (336)
11 1id1_A Putative potassium chan 51.3 20 0.00067 25.7 4.4 46 108-157 3-50 (153)
12 2r7a_A Bacterial heme binding 48.8 53 0.0018 25.3 6.9 34 105-142 56-89 (256)
13 3ahc_A Phosphoketolase, xylulo 46.0 4.8 0.00016 38.7 0.3 54 108-161 659-726 (845)
14 2bib_A CBPE, teichoic acid pho 45.1 21 0.00073 31.3 4.4 41 98-140 237-279 (547)
15 3psh_A Protein HI_1472; substr 44.9 23 0.00078 28.6 4.3 34 105-143 81-114 (326)
16 3nbm_A PTS system, lactose-spe 44.2 11 0.00038 26.9 2.0 37 107-145 52-88 (108)
17 4hn9_A Iron complex transport 44.1 22 0.00076 29.0 4.1 33 105-143 113-145 (335)
18 3zqu_A Probable aromatic acid 42.2 20 0.00068 28.5 3.4 45 110-154 6-50 (209)
19 1r61_A Metal-dependent hydrola 41.2 24 0.00082 27.6 3.7 50 93-144 88-145 (207)
20 1itz_A Transketolase; calvin c 39.1 10 0.00035 35.0 1.4 34 109-143 563-596 (675)
21 2r79_A Periplasmic binding pro 37.9 46 0.0016 26.3 5.0 35 104-142 55-89 (283)
22 1umd_B E1-beta, 2-OXO acid deh 37.9 11 0.00037 31.3 1.2 38 105-143 199-236 (324)
23 2ejb_A Probable aromatic acid 37.8 24 0.00081 27.5 3.2 43 110-152 3-45 (189)
24 3ju3_A Probable 2-oxoacid ferr 37.6 14 0.00048 26.3 1.7 36 107-143 12-47 (118)
25 3sho_A Transcriptional regulat 37.6 27 0.00092 25.7 3.3 49 93-142 23-72 (187)
26 3ipz_A Monothiol glutaredoxin- 36.8 30 0.001 23.8 3.3 51 94-144 3-56 (109)
27 3m49_A Transketolase; alpha-be 36.7 11 0.00039 35.0 1.3 36 108-144 576-611 (690)
28 3rim_A Transketolase, TK; TPP, 35.7 11 0.00039 35.2 1.1 36 108-144 584-619 (700)
29 1n2z_A Vitamin B12 transport p 35.6 40 0.0014 25.9 4.2 34 106-143 55-88 (245)
30 1e2b_A Enzyme IIB-cellobiose; 35.4 15 0.0005 25.9 1.5 31 111-141 7-37 (106)
31 2r8o_A Transketolase 1, TK 1; 35.1 11 0.00038 34.7 1.0 36 108-144 549-584 (669)
32 2yan_A Glutaredoxin-3; oxidore 34.3 36 0.0012 22.8 3.3 38 108-145 16-56 (105)
33 2e6k_A Transketolase; structur 34.3 13 0.00044 34.2 1.2 34 109-143 542-575 (651)
34 1w85_B Pyruvate dehydrogenase 34.0 12 0.00041 31.1 0.9 38 105-143 198-235 (324)
35 3fwz_A Inner membrane protein 33.7 33 0.0011 24.2 3.2 33 108-144 7-39 (140)
36 3l84_A Transketolase; TKT, str 33.6 13 0.00044 34.3 1.1 36 108-144 525-560 (632)
37 2q8p_A Iron-regulated surface 33.5 25 0.00085 27.3 2.6 33 106-143 58-90 (260)
38 1gpu_A Transketolase; transfer 31.5 11 0.00036 35.0 0.2 35 109-144 555-589 (680)
39 1vky_A S-adenosylmethionine:tR 30.3 62 0.0021 28.0 4.8 43 121-163 189-259 (347)
40 1yy3_A S-adenosylmethionine:tR 30.2 61 0.0021 28.0 4.7 43 121-163 186-256 (346)
41 3rht_A (gatase1)-like protein; 30.1 45 0.0015 27.2 3.7 37 109-146 5-41 (259)
42 1wdi_A Hypothetical protein TT 29.9 77 0.0026 27.3 5.3 43 121-163 187-256 (345)
43 4gxw_A Adenosine deaminase; am 29.8 28 0.00097 29.9 2.6 31 114-145 239-269 (380)
44 1iv0_A Hypothetical protein; r 29.8 1.2E+02 0.0041 20.9 5.5 37 106-142 49-92 (98)
45 2obn_A Hypothetical protein; s 29.8 50 0.0017 28.3 4.1 39 97-138 64-106 (349)
46 3uk1_A Transketolase; structur 29.5 13 0.00046 34.7 0.5 34 109-143 598-631 (711)
47 3fxa_A SIS domain protein; str 29.4 21 0.00073 26.8 1.6 53 93-146 28-82 (201)
48 1p3y_1 MRSD protein; flavoprot 28.1 42 0.0014 26.2 3.1 45 109-153 9-53 (194)
49 2nyt_A Probable C->U-editing e 28.0 1.3E+02 0.0045 23.4 6.0 52 107-158 109-163 (190)
50 2bfd_B 2-oxoisovalerate dehydr 27.6 16 0.00056 30.6 0.7 38 105-143 216-254 (342)
51 2l2q_A PTS system, cellobiose- 27.3 25 0.00087 24.4 1.6 38 111-148 8-47 (109)
52 1wik_A Thioredoxin-like protei 26.8 71 0.0024 21.5 3.9 37 108-144 14-53 (109)
53 3lgd_A Adenosine deaminase CEC 26.7 41 0.0014 30.3 3.1 37 108-147 352-388 (508)
54 4g85_A Histidine-tRNA ligase, 26.4 34 0.0012 30.1 2.6 35 108-142 419-453 (517)
55 3mcu_A Dipicolinate synthase, 26.4 46 0.0016 26.3 3.1 42 110-151 7-49 (207)
56 2ozl_B PDHE1-B, pyruvate dehyd 25.9 18 0.00061 30.4 0.6 38 105-143 213-250 (341)
57 4g84_A Histidine--tRNA ligase, 25.7 29 0.00099 29.7 1.9 35 108-142 366-400 (464)
58 1sbz_A Probable aromatic acid 25.2 50 0.0017 25.9 3.1 43 111-153 3-46 (197)
59 2nrt_A Uvrabc system protein C 24.9 30 0.001 27.9 1.8 81 55-143 23-116 (220)
60 2nrr_A Uvrabc system protein C 24.0 26 0.00089 27.0 1.1 83 55-145 18-113 (159)
61 3mos_A Transketolase, TK; thia 23.9 15 0.0005 33.7 -0.4 35 108-143 498-532 (616)
62 3kom_A Transketolase; rossmann 23.1 19 0.00064 33.4 0.2 35 108-143 549-583 (663)
63 3llv_A Exopolyphosphatase-rela 22.4 38 0.0013 23.5 1.7 32 109-144 7-38 (141)
64 3hh1_A Tetrapyrrole methylase 22.3 1.3E+02 0.0046 20.7 4.7 42 101-142 72-115 (117)
65 2d59_A Hypothetical protein PH 22.3 92 0.0032 22.4 3.9 49 93-143 9-57 (144)
66 2we8_A Xanthine dehydrogenase; 22.0 32 0.0011 29.7 1.5 40 103-146 199-238 (386)
67 2lqo_A Putative glutaredoxin R 21.9 1.5E+02 0.0052 19.8 4.8 33 109-143 4-36 (92)
68 3fau_A NEDD4-binding protein 2 21.7 42 0.0015 22.1 1.8 29 112-140 39-71 (82)
69 3zyw_A Glutaredoxin-3; metal b 21.6 60 0.002 22.4 2.6 38 107-144 14-54 (111)
70 3fm8_A Kinesin-like protein KI 21.4 95 0.0033 22.4 3.8 36 51-86 78-113 (124)
71 2eq6_A Pyruvate dehydrogenase 21.2 2.9E+02 0.0098 23.3 7.4 76 61-142 119-199 (464)
72 3qhp_A Type 1 capsular polysac 20.8 53 0.0018 22.9 2.2 30 107-140 31-60 (166)
73 2etv_A Iron(III) ABC transport 20.8 1.5E+02 0.0051 24.1 5.3 32 107-143 95-126 (346)
74 2g1u_A Hypothetical protein TM 20.5 55 0.0019 23.3 2.3 33 107-143 18-50 (155)
75 3on5_A BH1974 protein; structu 20.4 33 0.0011 29.5 1.2 41 103-147 194-234 (362)
76 2r85_A PURP protein PF1517; AT 20.3 74 0.0025 25.1 3.3 32 109-145 3-34 (334)
No 1
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=100.00 E-value=1.6e-42 Score=265.37 Aligned_cols=123 Identities=22% Similarity=0.315 Sum_probs=113.3
Q ss_pred cccccCCCCCcceEEEEcCCeEEECCEEEeecEEEeCCceeecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCC
Q 030825 44 INLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPV 123 (171)
Q Consensus 44 ~~~~~~~~~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l 123 (171)
+.+-++..++.+.|++|++|+|+|||++|.|||+|+|++++.|++++ ++|+++||+.+..+.|+||+||||||.+++++
T Consensus 5 M~l~~~~~~~~~~I~~y~~g~f~i~g~~~~g~i~v~p~~~~~W~~~~-~~l~~~~l~~l~~~~p~pevliiGtG~~~~~l 83 (128)
T 2fi9_A 5 IQIREAHFPGRAPIDAYGNGGFRFADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVELLRL 83 (128)
T ss_dssp ------CBSSCCCEEEEETTEEEETTEEEESEEEEETTEEEEECCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSCCCC
T ss_pred cccCCCCCCCCceEEEEcCCEEEECCEEEEeCEEEeCCCeeccCCCc-CCCCHHHHHHHHhcCCCCCEEEECCCCCCCCC
Confidence 44556677888999999999999999999999999999999999999 99999999988788899999999999999999
Q ss_pred CHHHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeccC
Q 030825 124 NPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPY 167 (171)
Q Consensus 124 ~p~l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip~ 167 (171)
+|+++++|+++||++|+|||++||||||+|++|||+|+|||||+
T Consensus 84 ~p~~~~~l~~~GI~vE~m~T~aAcrtyNiL~~EgR~VaaaLi~~ 127 (128)
T 2fi9_A 84 PEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFAV 127 (128)
T ss_dssp CHHHHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEEec
Confidence 99999999999999999999999999999999999999999995
No 2
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=100.00 E-value=1.6e-42 Score=267.95 Aligned_cols=117 Identities=27% Similarity=0.376 Sum_probs=113.0
Q ss_pred CCcceEEEEcCCeEEECCEEEeecEEEeCCceeecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHHHHHHH
Q 030825 52 EDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFI 131 (171)
Q Consensus 52 ~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~l~~~l 131 (171)
++.+.|++|++|+|+|||++|.|||+|+|++++.|+++++++|++++|+.|..+.|+||+||||||.++.+++|+++++|
T Consensus 11 ~~~~~I~~y~~g~f~ing~~~~gsilv~p~~~~~W~~~~~~~l~~e~l~~l~~~~p~pevliiGTG~~~~~l~p~l~~~l 90 (135)
T 2fvt_A 11 PRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWIAPRQLREAL 90 (135)
T ss_dssp CSCCCCCCEETTEEECSSSEECSEEEECSSCEEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSCCCCCHHHHHHH
T ss_pred CCCceEEEEcCCEEEECCEEEEeCEEEeCCCccccCCCCcccCCHHHHHHHHhcCCCCCEEEEcCCCCCCcCCHHHHHHH
Confidence 56678999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHcCCeEEEeChHHHHHHHHHhhhccceeEEEeccCc
Q 030825 132 RSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 168 (171)
Q Consensus 132 ~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip~~ 168 (171)
+++||+||+|||++||||||+|++|||+|+|||||+.
T Consensus 91 ~~~GI~vE~M~T~aAcrTyNiL~~EgR~VaAaLi~~~ 127 (135)
T 2fvt_A 91 RGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAVP 127 (135)
T ss_dssp HTTTCEEEEECHHHHHHHHHHHHHHTSCEEEEEECCC
T ss_pred HHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 9999999999999999999999999999999999975
No 3
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=100.00 E-value=1.1e-41 Score=262.33 Aligned_cols=119 Identities=24% Similarity=0.381 Sum_probs=111.5
Q ss_pred cCCCCCcceEEEEcCCeEEECCEEEeecEEEeCCce-eecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHH
Q 030825 48 DNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPE 126 (171)
Q Consensus 48 ~~~~~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v-~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~ 126 (171)
++..++.+.|++|++|+|+|||++|.|||+|+|+++ +.|+++++++|++++|+.+ ++++||+||||||.++.+++|+
T Consensus 5 ~~~~~~~~~I~~y~~g~f~i~g~~~~g~ilv~p~~~v~~W~~~~~~~l~~e~l~~l--l~~~pevliiGTG~~~~~l~p~ 82 (132)
T 2gm2_A 5 QEHPDYTYALRAADGRHAKVNEQILQQSFILMPDELVEHWPVPSLGQLQPAHMDAV--LALNPAVILLGTGERQQFPSTD 82 (132)
T ss_dssp CSSCCCCCCEEEECSSCEEETTEEECSEEEECSSCEECCCCCSSGGGCCTTTSHHH--HHHCCSEEEEECTTSCCCCCHH
T ss_pred ccCCCCCceEEEEcCCEEEECCEEEEeCEEEeCCCceeecCCCCcccCCHHHHHHH--HhcCCCEEEECCCCCCCcCCHH
Confidence 455677889999999999999999999999999997 9999999999999999954 4456999999999999999999
Q ss_pred HHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeccCc
Q 030825 127 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 168 (171)
Q Consensus 127 l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip~~ 168 (171)
++++|+++||++|+|||++||||||+|++|||+|+|||+|++
T Consensus 83 ~~~~l~~~GI~vE~m~T~aAcrTyNiL~~EgR~VaAaLi~~~ 124 (132)
T 2gm2_A 83 VLAACLTRGIGLEAMTNAAAARTYNVLASEGRRVALAMIVGG 124 (132)
T ss_dssp HHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEccCC
Confidence 999999999999999999999999999999999999999985
No 4
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=100.00 E-value=3.7e-40 Score=258.68 Aligned_cols=122 Identities=31% Similarity=0.435 Sum_probs=110.9
Q ss_pred cCCCCCcceEEEEcCCeEEECCEEEeecEEEeCCce-eecCCCCCCCCChhhhhhhhhhCC-------------------
Q 030825 48 DNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRP------------------- 107 (171)
Q Consensus 48 ~~~~~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v-~~W~~~~~~~l~~e~L~~l~~l~p------------------- 107 (171)
++...+.+.|++|++|+|+|||++|.||++++|++. ..|+++++++|+.++|+.+..+.+
T Consensus 5 ~~~~~~~~~I~~Y~~g~~~ing~~~~gsv~v~p~g~v~~W~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 84 (150)
T 3cpk_A 5 TDPATALNTVTAYGDGYIEVNQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLDEPEAGAGAR 84 (150)
T ss_dssp --CCCCCCCEEEEETTEEEETTEEECSCEEECSSSCCEECCCSSGGGCCHHHHHHHHTCC--------------------
T ss_pred ccCCCCCceEEEEcCCEEEECCEEEEcCEEEecCCceeecCCCChhhCCHHHHHHHHhcccccccchhhccccccccccc
Confidence 445667788999999999999999999999999876 999999999999999997666644
Q ss_pred ---CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeccCcc
Q 030825 108 ---IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGV 169 (171)
Q Consensus 108 ---~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip~~~ 169 (171)
+||+||||||.++++++|+++++|+++||+||+|+|++||||||+|++|||+|+|||||++-
T Consensus 85 p~~~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T~aA~rTyNiL~~EgRrVaaaLi~~~~ 149 (150)
T 3cpk_A 85 PANAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDGD 149 (150)
T ss_dssp ---CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCCCCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 89999999999999999999999999999999999999999999999999999999999863
No 5
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=100.00 E-value=3.6e-39 Score=245.26 Aligned_cols=111 Identities=14% Similarity=0.218 Sum_probs=106.1
Q ss_pred cceEEEEcCCeEEECCEEEee-cEEEeCCceeecC-----CCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCC-CCHH
Q 030825 54 QLRFQGYTDTGFTVNGVQYEG-SLLCIGNLLLSWT-----PKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEP-VNPE 126 (171)
Q Consensus 54 ~~~I~~y~~g~f~Ing~~y~g-svii~p~~v~~W~-----~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~-l~p~ 126 (171)
++.|++|++|+|+|||++|.| |++|+|+++..|+ .+++++++++||+. +++++||+||||||.+.++ ++|+
T Consensus 3 ~~~I~~y~~g~~~ing~~~~~~siiv~p~~~~~w~w~~~g~~~~~~l~~~~l~~--ll~~~~evliiGtG~~~~~~~~~~ 80 (122)
T 2ab1_A 3 SPEIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKE--VVEKGVQTLVIGRGMSEALKVPSS 80 (122)
T ss_dssp CCCEEEEETTEEEETTCSCEESEEEEETTEEEEECHHHHTCCSSSCCCHHHHHH--HHTTCCSEEEEEECSSCCSCCCHH
T ss_pred CCEEEEEcCCEEEECCEEEeCCCEEEECCccccCcccccCcCChhHCCHHHHHH--HhhCCCCEEEECCCCCCccCCCHH
Confidence 678999999999999999999 9999999999998 88999999999994 5788999999999999997 9999
Q ss_pred HHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEecc
Q 030825 127 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166 (171)
Q Consensus 127 l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip 166 (171)
++++|+++||++|+|+|++||||||+|++|||+|+|||+.
T Consensus 81 ~~~~l~~~gI~ve~m~T~~A~rtyN~L~~EgR~VaAal~~ 120 (122)
T 2ab1_A 81 TVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHS 120 (122)
T ss_dssp HHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEee
Confidence 9999999999999999999999999999999999999974
No 6
>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii} SCOP: c.103.1.1
Probab=100.00 E-value=2.6e-35 Score=222.95 Aligned_cols=106 Identities=12% Similarity=0.166 Sum_probs=96.0
Q ss_pred ceEEEEcCCeEEECCEEEeecEEEeCCce---eecCCCC-----CCCCChhhhhhhhhhCCCCcEEEEeecCCC-CCCCH
Q 030825 55 LRFQGYTDTGFTVNGVQYEGSLLCIGNLL---LSWTPKK-----FSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNP 125 (171)
Q Consensus 55 ~~I~~y~~g~f~Ing~~y~gsvii~p~~v---~~W~~~~-----~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~-~~l~p 125 (171)
+.|++|++|+|+|||++|.|||+|.|+++ ..|++.. +++|+++|++. +++.+||+||||||.++ .++++
T Consensus 1 ~~I~~yg~G~~~i~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~--ll~~~~evlliGTG~~~~~~~~~ 78 (118)
T 2cyj_A 1 MKIEEVRFGLVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEK--YLVEDFDVLLVGTGIYGMLSLLP 78 (118)
T ss_dssp CCEEEEETTEEEETTEEESSCEEECTTSCEEECCTHHHHHHHSSTTEECHHHHHT--TTTSCCSEEEEEECTTCCCEECH
T ss_pred CceeEecCCEEEECCEEEeeCEEEeCCCcccccccCccccccCCcccCCHHHHHH--HHhcCCCEEEECCCCCccccCCH
Confidence 36999999999999999999999999987 6666543 68899999984 55667999999999995 78999
Q ss_pred HHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEec
Q 030825 126 ELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 165 (171)
Q Consensus 126 ~l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALi 165 (171)
+++++|+++ ++|+|||++||||||+|+ |||+|+|||.
T Consensus 79 ~~~~~l~~~--~ve~M~T~aAcrTYNiL~-EgRrV~aalh 115 (118)
T 2cyj_A 79 ESKKLVEDK--EVIEKPTKEALKLLEELW-GKKRILAIIH 115 (118)
T ss_dssp HHHHHTTTS--EEEEECHHHHHHHHHHHB-TTBCEEEEEE
T ss_pred HHHHHHHHC--CcEEeCHHHHHHHHHHHh-cCCeEEEEEe
Confidence 999999999 999999999999999999 9999999985
No 7
>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1
Probab=99.97 E-value=3.2e-33 Score=210.13 Aligned_cols=100 Identities=19% Similarity=0.155 Sum_probs=87.3
Q ss_pred ceEEEEcCCeEEECCEEEeecEEEeCCce---eecCCCC-----CCCCChhhhhhhhhhCCCCcEEEEeecCCC-CCCCH
Q 030825 55 LRFQGYTDTGFTVNGVQYEGSLLCIGNLL---LSWTPKK-----FSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNP 125 (171)
Q Consensus 55 ~~I~~y~~g~f~Ing~~y~gsvii~p~~v---~~W~~~~-----~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~-~~l~p 125 (171)
..|++|++|+|+|||++|.+||+|.|+++ ..|++.. +++|+++|++. +++.+||+||||||.++ .++++
T Consensus 2 ~~I~~yg~G~~~i~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~--ll~~~~evlliGTG~~~~~~~~~ 79 (113)
T 1ihn_A 2 HMFSDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEE--LLEEKPESIIIGSGVHGALETGF 79 (113)
T ss_dssp CCEEEEETTEEEETTEEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHHH--HHTTCCSEEEEECCTTCCCEESS
T ss_pred CceeEEcCCEEEECCEEEeeCEEEeCCCcccccccCccccccCccccCCHHHHHH--HHhcCCCEEEECCCCCccccCCh
Confidence 56999999999999999999999999887 6666543 67899999984 55567999999999995 45667
Q ss_pred HHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEec
Q 030825 126 ELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 165 (171)
Q Consensus 126 ~l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALi 165 (171)
+++ +|+|+|++||||||+|++|||+|+|||.
T Consensus 80 ~~~---------ve~M~T~aAcrTYNiL~~EgRrV~aalh 110 (113)
T 1ihn_A 80 RSD---------ATVLPTCEAIKRYNEERSAGRRVAAIIH 110 (113)
T ss_dssp CCS---------CEEECHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred hhE---------EEEcChHHHHHHHHHHHhCCCeEEEEEe
Confidence 664 9999999999999999999999999985
No 8
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=55.87 E-value=19 Score=27.93 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=26.5
Q ss_pred hhCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 030825 104 LVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 142 (171)
Q Consensus 104 ~l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMd 142 (171)
++.-+||+||...... +.+..+.|++.||.+-+++
T Consensus 55 i~~l~PDlIi~~~~~~----~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 55 ILAMKPTMLLVSELAQ----PSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp HHTTCCSEEEEETTCS----CHHHHHHHHHTTCEEEEEC
T ss_pred HHccCCCEEEEcCCcC----chhHHHHHHHcCCcEEEeC
Confidence 3455799988765432 4678899999999999886
No 9
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=53.40 E-value=8.7 Score=29.77 Aligned_cols=48 Identities=15% Similarity=0.329 Sum_probs=36.5
Q ss_pred EEEEeecCCCCCCCHH--HHHHHHHcCCeEEEeChHHHHHHHHHhhhccc
Q 030825 111 ILILGCGRYIEPVNPE--LRQFIRSTGMKLEAIDSRNAASTYNILNEEGR 158 (171)
Q Consensus 111 vLIIGTG~~~~~l~p~--l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR 158 (171)
++++||-+...+.|-. +...|+++|..+-+-.|++|++.--+==-||.
T Consensus 10 LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~npAAlkLlevaDPe~~ 59 (157)
T 1kjn_A 10 LMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQVADPEGI 59 (157)
T ss_dssp EEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHSTTCC
T ss_pred eEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCHHHHhheeccCCCcc
Confidence 6889998886655555 45579999999999999999987655434443
No 10
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=53.16 E-value=8.5 Score=27.60 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=25.1
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 109 PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
.||+|||-|..- -.+...|.++|+.|.+.+-
T Consensus 3 ~dV~IIGaGpaG----L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAG----LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHH----HHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHH----HHHHHHHHHCCCCEEEEEC
Confidence 689999999753 2366688999999999974
No 11
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=51.32 E-value=20 Score=25.68 Aligned_cols=46 Identities=7% Similarity=0.075 Sum_probs=31.6
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH--HHHHHHHHhhhcc
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR--NAASTYNILNEEG 157 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~--aAcrTyNiL~sEG 157 (171)
+..++|+|.|. +-..+.+.|.+.|..+-+++.. +.|+.......+|
T Consensus 3 ~~~vlI~G~G~----vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~ 50 (153)
T 1id1_A 3 KDHFIVCGHSI----LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDN 50 (153)
T ss_dssp CSCEEEECCSH----HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTT
T ss_pred CCcEEEECCCH----HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCC
Confidence 45789999886 4467888888899999988763 4455544333333
No 12
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=48.84 E-value=53 Score=25.27 Aligned_cols=34 Identities=9% Similarity=0.064 Sum_probs=25.7
Q ss_pred hCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 030825 105 VRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 142 (171)
Q Consensus 105 l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMd 142 (171)
+.-+||+||...+. .+++..+.|++.||.+-+++
T Consensus 56 ~~l~PDLIi~~~~~----~~~~~~~~L~~~gipvv~~~ 89 (256)
T 2r7a_A 56 LSLRPDSVITWQDA----GPQIVLDQLRAQKVNVVTLP 89 (256)
T ss_dssp HTTCCSEEEEETTC----SCHHHHHHHHHTTCEEEEEC
T ss_pred HccCCCEEEEcCCC----CCHHHHHHHHHcCCcEEEec
Confidence 34569998875431 35789999999999988875
No 13
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=45.96 E-value=4.8 Score=38.72 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=37.6
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH--------------HHHHHHHHhhhccceeE
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR--------------NAASTYNILNEEGRIVA 161 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~--------------aAcrTyNiL~sEGR~Va 161 (171)
.||++||+||..+..-.-+..+.|++.||.+.|.+.. .+.+.|..+....+.+.
T Consensus 659 ~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i 726 (845)
T 3ahc_A 659 EVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVL 726 (845)
T ss_dssp TCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEE
T ss_pred CCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcce
Confidence 4999999999765443456778899999999997321 14556666666555554
No 14
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=45.13 E-value=21 Score=31.30 Aligned_cols=41 Identities=10% Similarity=0.274 Sum_probs=32.0
Q ss_pred hhhhhhhhCCCCcEEEEeecCC--CCCCCHHHHHHHHHcCCeEEE
Q 030825 98 CLSIFQLVRPIPEILILGCGRY--IEPVNPELRQFIRSTGMKLEA 140 (171)
Q Consensus 98 ~L~~l~~l~p~PEvLIIGTG~~--~~~l~p~l~~~l~~~GI~vEv 140 (171)
+.++++.+. |++.||-+|.. ...|++++.+.|++.||.+-.
T Consensus 237 s~~fl~~v~--P~~aiiS~g~~n~~~hP~~evl~~l~~~g~~v~~ 279 (547)
T 2bib_A 237 TKDFIKNLS--PSLIVQTSDSLPWKNGVDSEYVNWLKERGIERIN 279 (547)
T ss_dssp CHHHHHHHC--CSEEEESBSSCSBSSSBCHHHHHHHHTTTCEEEE
T ss_pred hHHHHHhcC--CcEEEEcCCcccccCCCCHHHHHHHHhCCceEEE
Confidence 344556665 88999999986 346899999999999988755
No 15
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=44.85 E-value=23 Score=28.60 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=26.3
Q ss_pred hCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 105 VRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 105 l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
+.-+||+||.+.. .+++..+.|++.||.+-+++.
T Consensus 81 ~~l~PDlIi~~~~-----~~~~~~~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 81 LALKPDVVFVTNY-----APSEMIKQISDVNIPVVAISL 114 (326)
T ss_dssp HHTCCSEEEEETT-----CCHHHHHHHHTTTCCEEEECS
T ss_pred HccCCCEEEEeCC-----CChHHHHHHHHcCCCEEEEec
Confidence 3446999887642 257889999999999999864
No 16
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=44.23 E-value=11 Score=26.85 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=30.1
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHH
Q 030825 107 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRN 145 (171)
Q Consensus 107 p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~a 145 (171)
++.|++++|. +..+.-+++.+...++||.|++++...
T Consensus 52 ~~~DvvLLgP--QV~y~~~~ik~~~~~~~ipV~vI~~~~ 88 (108)
T 3nbm_A 52 GVYDLIILAP--QVRSYYREMKVDAERLGIQIVATRGME 88 (108)
T ss_dssp GGCSEEEECG--GGGGGHHHHHHHHTTTTCEEEECCHHH
T ss_pred cCCCEEEECh--HHHHHHHHHHHHhhhcCCcEEEeCHHH
Confidence 4689999965 556666889888888999999999754
No 17
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=44.09 E-value=22 Score=29.02 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=26.0
Q ss_pred hCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 105 VRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 105 l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
+.-+||+||...+ .++..+.|++.||.+-+++.
T Consensus 113 ~al~PDLIi~~~~------~~~~~~~L~~~gipvv~~~~ 145 (335)
T 4hn9_A 113 VAATPDVVFLPMK------LKKTADTLESLGIKAVVVNP 145 (335)
T ss_dssp HHTCCSEEEEEGG------GHHHHHHHHHTTCCEEEECC
T ss_pred HhcCCCEEEEeCc------chhHHHHHHHcCCCEEEEcC
Confidence 3456999887653 46789999999999999863
No 18
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=42.21 E-value=20 Score=28.50 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=37.6
Q ss_pred cEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHhh
Q 030825 110 EILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILN 154 (171)
Q Consensus 110 EvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~aAcrTyNiL~ 154 (171)
-++|-=||.--..-..++.+.|++.|..|.++=|++|++..+-+.
T Consensus 6 ~IllgvTGaiaa~k~~~ll~~L~~~g~eV~vv~T~~A~~fi~~et 50 (209)
T 3zqu_A 6 RITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATET 50 (209)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHC
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECccHHHHHHHHh
Confidence 466666788766668889999999999999999999999987654
No 19
>1r61_A Metal-dependent hydrolase; zinc-dependent hydrolase, structural genomics, cyclase, PSI, protein structure initiative; 2.50A {Geobacillus stearothermophilus} SCOP: c.8.8.1 PDB: 3krv_A
Probab=41.22 E-value=24 Score=27.61 Aligned_cols=50 Identities=10% Similarity=0.199 Sum_probs=37.4
Q ss_pred CCChhhhhhhhhhCCCCcEEEEeecCC--------CCCCCHHHHHHHHHcCCeEEEeChH
Q 030825 93 EITPNCLSIFQLVRPIPEILILGCGRY--------IEPVNPELRQFIRSTGMKLEAIDSR 144 (171)
Q Consensus 93 ~l~~e~L~~l~~l~p~PEvLIIGTG~~--------~~~l~p~l~~~l~~~GI~vEvMdT~ 144 (171)
.|+.++++..+ +. +-|+|+|=||-. .--++++..++|.++||..--.||.
T Consensus 88 ~It~~dl~~~~-i~-~gd~vlirTg~~~~~~y~~~~pgls~eaa~~L~~~~v~~vG~D~~ 145 (207)
T 1r61_A 88 RITKDDIAHLD-IQ-EGDFVLFKTKNSFEDAFHFEFIFVAEDAARYLADKQIRGVGIDAL 145 (207)
T ss_dssp EECHHHHTTSC-CC-TTCEEEEECGGGGCCSCCTTCCEECHHHHHHHHHHTCSEEECSSS
T ss_pred ccCHHHHHhcc-CC-CCcEEEEECCCCCchhhcCCCcccCHHHHHHHHHCCCCEEEEcCC
Confidence 68999887543 33 349999999931 2246899999999999988877763
No 20
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=39.14 E-value=10 Score=35.02 Aligned_cols=34 Identities=15% Similarity=0.484 Sum_probs=27.6
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 109 PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
+|++||++|... ...-+..+.|++.||.+++.|.
T Consensus 563 ~dv~iva~G~~v-~~al~Aa~~L~~~Gi~v~Vv~~ 596 (675)
T 1itz_A 563 PDLIVMGTGSEL-EIAAKAADELRKEGKTVRVVSF 596 (675)
T ss_dssp CSEEEEECGGGH-HHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECHHH-HHHHHHHHHHHhcCCcEEEEEe
Confidence 899999999864 3445567788999999999874
No 21
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=37.89 E-value=46 Score=26.26 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=26.1
Q ss_pred hhCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 030825 104 LVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 142 (171)
Q Consensus 104 ~l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMd 142 (171)
++.-+||+||..... -+++..+.|++.||.+-+++
T Consensus 55 i~~l~PDLIi~~~~~----~~~~~~~~L~~~gipvv~~~ 89 (283)
T 2r79_A 55 VLALRPDILIGTEEM----GPPPVLKQLEGAGVRVETLS 89 (283)
T ss_dssp HHTTCCSEEEECTTC----CCHHHHHHHHHTTCCEEECC
T ss_pred HHhcCCCEEEEeCcc----CcHHHHHHHHHcCCcEEEec
Confidence 334569998875421 35788999999999998874
No 22
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=37.87 E-value=11 Score=31.33 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=28.4
Q ss_pred hCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 105 VRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 105 l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
+....|++||++|.... .--+..+.|++.||.+++.+-
T Consensus 199 ~~~g~dv~iva~G~~~~-~a~~Aa~~L~~~Gi~v~vi~~ 236 (324)
T 1umd_B 199 RREGKDLTLICYGTVMP-EVLQAAAELAKAGVSAEVLDL 236 (324)
T ss_dssp EECCSSEEEEECGGGHH-HHHHHHHHHHHTTCCEEEEEC
T ss_pred EecCCCEEEEEecHHHH-HHHHHHHHHHhcCCCEEEEEe
Confidence 34568999999998642 334566778889999998853
No 23
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=37.76 E-value=24 Score=27.47 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=35.4
Q ss_pred cEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHH
Q 030825 110 EILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNI 152 (171)
Q Consensus 110 EvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~aAcrTyNi 152 (171)
-+++-=||..-..-.+++.+.|++.|+.|.++=|++|++...-
T Consensus 3 ~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~T~~A~~~i~~ 45 (189)
T 2ejb_A 3 KIALCITGASGVIYGIKLLQVLEELDFSVDLVISRNAKVVLKE 45 (189)
T ss_dssp EEEEEECSSTTHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHhhH
Confidence 3666677876555567888999999999999999999998876
No 24
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=37.61 E-value=14 Score=26.31 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=26.0
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 107 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 107 p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
...|++||++|..... -.+..+.|++.|+.+.+++-
T Consensus 12 ~g~dv~iv~~Gs~~~~-a~eA~~~L~~~Gi~v~vi~~ 47 (118)
T 3ju3_A 12 KEADITFVTWGSQKGP-ILDVIEDLKEEGISANLLYL 47 (118)
T ss_dssp SSCSEEEEEEGGGHHH-HHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCEEEEEECccHHH-HHHHHHHHHHCCCceEEEEE
Confidence 4679999999976432 23455678888998888753
No 25
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=37.58 E-value=27 Score=25.70 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=35.8
Q ss_pred CCChhhhh-hhhhhCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 030825 93 EITPNCLS-IFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 142 (171)
Q Consensus 93 ~l~~e~L~-~l~~l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMd 142 (171)
.++.+.++ +.+.+...-.+.++|+|.. ..+...+...|...|+.+.+.+
T Consensus 23 ~l~~~~l~~~~~~i~~a~~I~i~G~G~S-~~~a~~~~~~l~~~g~~~~~~~ 72 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRADHVIVVGMGFS-AAVAVFLGHGLNSLGIRTTVLT 72 (187)
T ss_dssp TCCHHHHHHHHHHHHHCSEEEEECCGGG-HHHHHHHHHHHHHTTCCEEEEC
T ss_pred hCCHHHHHHHHHHHHhCCEEEEEecCch-HHHHHHHHHHHHhcCCCEEEec
Confidence 45556664 4445555568999999985 3455667778889999999998
No 26
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=36.79 E-value=30 Score=23.79 Aligned_cols=51 Identities=10% Similarity=0.210 Sum_probs=35.0
Q ss_pred CChhhhhhhhhhCCCCcEEEEeecCC---CCCCCHHHHHHHHHcCCeEEEeChH
Q 030825 94 ITPNCLSIFQLVRPIPEILILGCGRY---IEPVNPELRQFIRSTGMKLEAIDSR 144 (171)
Q Consensus 94 l~~e~L~~l~~l~p~PEvLIIGTG~~---~~~l~p~l~~~l~~~GI~vEvMdT~ 144 (171)
++++.-+.++.+-....|+|++.+.. .-.....++++|.++||.++..+..
T Consensus 3 ~s~~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~ 56 (109)
T 3ipz_A 3 LTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNIL 56 (109)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGG
T ss_pred CCHHHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECC
Confidence 34443333333434567999998854 3456678999999999999987653
No 27
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=36.73 E-value=11 Score=35.03 Aligned_cols=36 Identities=11% Similarity=0.327 Sum_probs=27.9
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 144 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~ 144 (171)
++|+.||++|.... ..-+..+.|++.||.+++.|..
T Consensus 576 ~~dvtiia~G~~v~-~Al~Aa~~L~~~GI~~~Vid~~ 611 (690)
T 3m49_A 576 TADVILLATGSEVS-LAVEAQKALAVDGVDASVVSMP 611 (690)
T ss_dssp SCSEEEEECTTHHH-HHHHHHHHHHHTTCCEEEEECS
T ss_pred CCCEEEEEechHHH-HHHHHHHHHHhcCCCeEEEecc
Confidence 36999999997532 3345667899999999998765
No 28
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=35.69 E-value=11 Score=35.18 Aligned_cols=36 Identities=6% Similarity=0.298 Sum_probs=27.9
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 144 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~ 144 (171)
++|+.||++|... ...-+..+.|++.||.+++.|..
T Consensus 584 ~~dvtiia~G~~v-~~al~Aa~~L~~~Gi~~~VVd~~ 619 (700)
T 3rim_A 584 EPDVILIATGSEV-QLAVAAQTLLADNDILARVVSMP 619 (700)
T ss_dssp CCSEEEEECGGGH-HHHHHHHHHHHTTTCCEEEEECS
T ss_pred CCCEEEEEechHH-HHHHHHHHHHHhcCCCeEEEEec
Confidence 3699999999754 23345667899999999998765
No 29
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=35.57 E-value=40 Score=25.88 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.2
Q ss_pred CCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 106 RPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 106 ~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
.-+||++|.... ..+++..+.|++.||.+-+++.
T Consensus 55 ~l~PDLIi~~~~----~~~~~~~~~L~~~gipvv~~~~ 88 (245)
T 1n2z_A 55 ALKPDLVIAWRG----GNAERQVDQLASLGIKVMWVDA 88 (245)
T ss_dssp HTCCSEEEECTT----TSCHHHHHHHHHHTCCEEECCC
T ss_pred ccCCCEEEEeCC----CCcHHHHHHHHHCCCcEEEeCC
Confidence 346999887421 2357889999999999988763
No 30
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=35.42 E-value=15 Score=25.87 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=24.2
Q ss_pred EEEEeecCCCCCCCHHHHHHHHHcCCeEEEe
Q 030825 111 ILILGCGRYIEPVNPELRQFIRSTGMKLEAI 141 (171)
Q Consensus 111 vLIIGTG~~~~~l~p~l~~~l~~~GI~vEvM 141 (171)
+++-|+|-..-.+-..+.+.++++||.+|+-
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~ 37 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPVIIE 37 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSEEEE
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCeEEE
Confidence 4566777776577779999999999987765
No 31
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=35.12 E-value=11 Score=34.71 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=28.3
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 144 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~ 144 (171)
++|++||++|... ...-+..+.|++.||.+++.|..
T Consensus 549 ~~dv~iva~G~~v-~~al~Aa~~L~~~Gi~~~Vv~~~ 584 (669)
T 2r8o_A 549 QPELIFIATGSEV-ELAVAAYEKLTAEGVKARVVSMP 584 (669)
T ss_dssp SCSEEEEECGGGH-HHHHHHHHHHHHHTCCEEEEECS
T ss_pred CCCEEEEEECHHH-HHHHHHHHHHHhcCCCeEEEEec
Confidence 3899999999864 34455677889999999998643
No 32
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=34.33 E-value=36 Score=22.83 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCcEEEEeecCC---CCCCCHHHHHHHHHcCCeEEEeChHH
Q 030825 108 IPEILILGCGRY---IEPVNPELRQFIRSTGMKLEAIDSRN 145 (171)
Q Consensus 108 ~PEvLIIGTG~~---~~~l~p~l~~~l~~~GI~vEvMdT~a 145 (171)
...++|+.+|.. .......++++|.++||.++..|...
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~ 56 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE 56 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGG
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCC
Confidence 346899988763 44677889999999999998887654
No 33
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=34.32 E-value=13 Score=34.19 Aligned_cols=34 Identities=12% Similarity=0.404 Sum_probs=27.6
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 109 PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
+|++||++|... ...-+..+.|++.||.+++.+.
T Consensus 542 ~dv~iva~G~~v-~~al~Aa~~L~~~Gi~~~Vv~~ 575 (651)
T 2e6k_A 542 PQGVLVATGSEV-HLALRAQALLREKGVRVRVVSL 575 (651)
T ss_dssp CSEEEEECTTHH-HHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECHHH-HHHHHHHHHHHhcCCcEEEEec
Confidence 899999999864 3345567788999999999974
No 34
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=34.02 E-value=12 Score=31.08 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=28.4
Q ss_pred hCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 105 VRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 105 l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
+....|++||++|.... .--+..+.|++.||.+++.+.
T Consensus 198 ~~~g~dv~iva~G~~~~-~a~~Aa~~L~~~Gi~v~vi~~ 235 (324)
T 1w85_B 198 KREGKDITIIAYGAMVH-ESLKAAAELEKEGISAEVVDL 235 (324)
T ss_dssp EECCSSEEEEECTTHHH-HHHHHHHHHHHTTCCEEEEEC
T ss_pred EecCCCEEEEEecHHHH-HHHHHHHHHHhcCCCEEEEEe
Confidence 34568999999998643 334566778889999988853
No 35
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=33.71 E-value=33 Score=24.22 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=24.5
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 144 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~ 144 (171)
+.-++|+|.|. +-..+.+.|.+.|..+-+.+..
T Consensus 7 ~~~viIiG~G~----~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 7 CNHALLVGYGR----VGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CSCEEEECCSH----HHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEECcCH----HHHHHHHHHHHCCCCEEEEECC
Confidence 35689999987 3456777888888888887653
No 36
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=33.63 E-value=13 Score=34.31 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=27.9
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 144 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~ 144 (171)
..|+.||++|... ...-+..+.|++.||.+++.|..
T Consensus 525 g~dvtiia~G~~v-~~al~Aa~~L~~~Gi~~~Vi~~~ 560 (632)
T 3l84_A 525 EAKFTLLASGSEV-WLCLESANELEKQGFACNVVSMP 560 (632)
T ss_dssp TCSEEEEECGGGH-HHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCCEEEEEechHH-HHHHHHHHHHHhcCCCeEEEecC
Confidence 6899999999743 23445667899999999998653
No 37
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=33.46 E-value=25 Score=27.25 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=24.5
Q ss_pred CCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 106 RPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 106 ~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
.-+||++|...+ .++++.+.|++.||.+-+++.
T Consensus 58 ~l~PDLIi~~~~-----~~~~~~~~L~~~gipvv~~~~ 90 (260)
T 2q8p_A 58 KLKPTHVLSVST-----IKDEMQPFYKQLNMKGYFYDF 90 (260)
T ss_dssp HTCCSEEEEEGG-----GHHHHHHHHHHHTSCCEEECC
T ss_pred hcCCCEEEecCc-----cCHHHHHHHHHcCCcEEEecC
Confidence 346999887643 246788999999999877753
No 38
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=31.55 E-value=11 Score=34.96 Aligned_cols=35 Identities=14% Similarity=0.385 Sum_probs=27.9
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 030825 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 144 (171)
Q Consensus 109 PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~ 144 (171)
+|++||++|... ...-+..+.|++.||.+++.|..
T Consensus 555 ~dvtiva~G~~v-~~al~Aa~~L~~~Gi~~~Vvd~~ 589 (680)
T 1gpu_A 555 PDIILVATGSEV-SLSVEAAKTLAAKNIKARVVSLP 589 (680)
T ss_dssp CSEEEEECTHHH-HHHHHHHHHHHTTTCCEEEEECS
T ss_pred CCEEEEEEcHHH-HHHHHHHHHHHhcCCCEEEEEcC
Confidence 899999999854 34455677889999999999743
No 39
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase-ISOM; TM0574, struct genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1
Probab=30.25 E-value=62 Score=27.96 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHcCCeEEEeC----------------------------hHHHHHHHHHhhhccceeEEE
Q 030825 121 EPVNPELRQFIRSTGMKLEAID----------------------------SRNAASTYNILNEEGRIVAAA 163 (171)
Q Consensus 121 ~~l~p~l~~~l~~~GI~vEvMd----------------------------T~aAcrTyNiL~sEGR~VaAA 163 (171)
...++++.+.|+++||.+.... ++++|+.-|--.++|++|+|.
T Consensus 189 LHFt~eLL~~L~~kGv~~a~vTLHVG~GTF~PV~~edi~~H~MHsE~~~V~~eta~~in~aka~G~RViAV 259 (347)
T 1vky_A 189 LHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKMHEEFYQVPKETVRKLRETRERGNRIVAV 259 (347)
T ss_dssp GGCCHHHHHHHHHHTCEEEEEEEEC------------------CCCEEEECHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCHHHHHHHHHCCCcEEEEEEeecCCCCCCccccccccCCcccEEEEECHHHHHHHHHHHHcCCeEEEE
Confidence 4678999999999999887653 267888889888899999874
No 40
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=30.23 E-value=61 Score=27.96 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHcCCeEEEeC----------------------------hHHHHHHHHHhhhccceeEEE
Q 030825 121 EPVNPELRQFIRSTGMKLEAID----------------------------SRNAASTYNILNEEGRIVAAA 163 (171)
Q Consensus 121 ~~l~p~l~~~l~~~GI~vEvMd----------------------------T~aAcrTyNiL~sEGR~VaAA 163 (171)
...++++.+.|+++||.+.... ++++|+.-|--.++|++|+|.
T Consensus 186 LHFt~eLl~~L~~kGv~~a~vTLHVG~GTF~PV~~e~i~~H~MHsE~~~V~~~ta~~in~aka~G~RViAV 256 (346)
T 1yy3_A 186 LHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNMHAEFYQMSEETAAALNKVRENGGRIISV 256 (346)
T ss_dssp TCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------CCCEEEEECHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHCCCeEEEEEEeecCCCCCCccccccccCCcccEEEEECHHHHHHHHHHHHcCCeEEEE
Confidence 4678999999999999887653 378899999999999999874
No 41
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=30.14 E-value=45 Score=27.21 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=27.3
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHH
Q 030825 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNA 146 (171)
Q Consensus 109 PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~aA 146 (171)
+.+||+| |.+...-...+.+.|++.|+.|+++++...
T Consensus 5 ~~vLiV~-g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~ 41 (259)
T 3rht_A 5 TRVLYCG-DTSLETAAGYLAGLMTSWQWEFDYIPSHVG 41 (259)
T ss_dssp -CEEEEE-SSCTTTTHHHHHHHHHHTTCCCEEECTTSC
T ss_pred ceEEEEC-CCCchhHHHHHHHHHHhCCceEEEeccccc
Confidence 5788886 555444556688899999999999986543
No 42
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=29.93 E-value=77 Score=27.31 Aligned_cols=43 Identities=30% Similarity=0.412 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHcCCeEEEeC---------------------------hHHHHHHHHHhhhccceeEEE
Q 030825 121 EPVNPELRQFIRSTGMKLEAID---------------------------SRNAASTYNILNEEGRIVAAA 163 (171)
Q Consensus 121 ~~l~p~l~~~l~~~GI~vEvMd---------------------------T~aAcrTyNiL~sEGR~VaAA 163 (171)
...++++.+.|+++||.+.... ++++|+.-|--.++|++|+|.
T Consensus 187 LHFt~~Ll~~L~~kGv~~a~vTLHVG~GTF~PV~e~i~~H~MHsE~~~V~~~ta~~in~aka~G~RViAV 256 (345)
T 1wdi_A 187 LHFTPELLERLREMGVELRFLTLHVGPGTFRPVKGDPEKHEMHAEPYAIPEEVAEAVNRAKAEGRRVVAV 256 (345)
T ss_dssp GGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC---------CCCEEEEECHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHCCCeEEEEEEeecCCCCcccccchhcCCccceEEEECHHHHHHHHHHHHcCCeEEEE
Confidence 3567788888888888766442 368889999999999999874
No 43
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=29.81 E-value=28 Score=29.89 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=25.6
Q ss_pred EeecCCCCCCCHHHHHHHHHcCCeEEEeChHH
Q 030825 114 LGCGRYIEPVNPELRQFIRSTGMKLEAIDSRN 145 (171)
Q Consensus 114 IGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~a 145 (171)
||-|-.. .-+|++.+.++++||.+|+.+|.|
T Consensus 239 IgHG~~~-~~d~~L~~~l~~~~I~lEvCP~SN 269 (380)
T 4gxw_A 239 VDHGYTI-VDNPELCARYAERGIVFTVVPTNS 269 (380)
T ss_dssp EEECGGG-GGCHHHHHHHHHHTCEEEECTTCH
T ss_pred cccceee-ccChHHHHHHHHhCceeEECCcch
Confidence 4666554 347999999999999999999987
No 44
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=29.81 E-value=1.2e+02 Score=20.90 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=26.5
Q ss_pred CCCCcEEEEe-----ecCC--CCCCCHHHHHHHHHcCCeEEEeC
Q 030825 106 RPIPEILILG-----CGRY--IEPVNPELRQFIRSTGMKLEAID 142 (171)
Q Consensus 106 ~p~PEvLIIG-----TG~~--~~~l~p~l~~~l~~~GI~vEvMd 142 (171)
+.+++.+|+| -|.. +..-..+..+.|+++++.|+..|
T Consensus 49 e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~D 92 (98)
T 1iv0_A 49 REGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWD 92 (98)
T ss_dssp HHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEEC
T ss_pred HcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3479999999 4544 34556677777877688888776
No 45
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=29.77 E-value=50 Score=28.28 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=24.1
Q ss_pred hhhhhhhhhCCCCcEEEEeecCCCCCCC----HHHHHHHHHcCCeE
Q 030825 97 NCLSIFQLVRPIPEILILGCGRYIEPVN----PELRQFIRSTGMKL 138 (171)
Q Consensus 97 e~L~~l~~l~p~PEvLIIGTG~~~~~l~----p~l~~~l~~~GI~v 138 (171)
.|++ +.++.+||+||+|+-..--+++ +.+.+++ ++|+.|
T Consensus 64 ~~l~--~al~~~~d~lvig~a~~gG~l~~~~~~~i~~Al-~~G~~V 106 (349)
T 2obn_A 64 KSVE--AALEYKPQVLVIGIAPKGGGIPDDYWIELKTAL-QAGMSL 106 (349)
T ss_dssp SSHH--HHGGGCCSEEEECCCCCCC-SCGGGHHHHHHHH-HTTCEE
T ss_pred CCHH--HHHhCCCCEEEEEecCCCCCCCHHHHHHHHHHH-HcCCcE
Confidence 5565 3445579999999933333444 4444444 488888
No 46
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=29.51 E-value=13 Score=34.74 Aligned_cols=34 Identities=12% Similarity=0.302 Sum_probs=26.6
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 109 PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
+|+.||++|.... ..-+..+.|++.||.+++.|.
T Consensus 598 ~dvtiia~G~~v~-~al~Aa~~L~~~GI~~~Vid~ 631 (711)
T 3uk1_A 598 RKIILIATGSEVE-LAMKAVEPLAQQGIAARVVSM 631 (711)
T ss_dssp EEEEEEECTTHHH-HHHHHHHHHHHTTEEEEEEEC
T ss_pred CCEEEEEecHHHH-HHHHHHHHHHHcCCCeEEEec
Confidence 8999999997532 334566788999999999864
No 47
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=29.40 E-value=21 Score=26.77 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=37.0
Q ss_pred CCChhhhh-hhhhhCCCC-cEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHH
Q 030825 93 EITPNCLS-IFQLVRPIP-EILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNA 146 (171)
Q Consensus 93 ~l~~e~L~-~l~~l~p~P-EvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~aA 146 (171)
.++.+.++ +.+.+.... .+.++|+|.. ..+...+...|.+.|+.+.+.+....
T Consensus 28 ~l~~~~i~~~~~~i~~a~~~I~i~G~G~S-~~~A~~~~~~l~~~g~~~~~~~~~~~ 82 (201)
T 3fxa_A 28 VTSEEALVKTVEKIAECTGKIVVAGCGTS-GVAAKKLVHSFNCIERPAVFLTPSDA 82 (201)
T ss_dssp HSCHHHHHHHHHHHHHCSSCEEEECCTHH-HHHHHHHHHHHHHTTCCEEECCHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCcEEEEEecHH-HHHHHHHHHHHHhcCCcEEEeCchHH
Confidence 45556664 445555454 7999999987 33455677778889999999876543
No 48
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=28.13 E-value=42 Score=26.18 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=36.8
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHh
Q 030825 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNIL 153 (171)
Q Consensus 109 PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~aAcrTyNiL 153 (171)
.-+++.=||.--..-.+++.+.|++.|+.|.+.=|++|.+...-+
T Consensus 9 k~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~ 53 (194)
T 1p3y_1 9 KKLLIGICGSISSVGISSYLLYFKSFFKEIRVVMTKTAEDLIPAH 53 (194)
T ss_dssp CEEEEEECSCGGGGGTHHHHHHHTTTSSEEEEEECHHHHHHSCHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEchhHHHHHHHH
Confidence 457777788885556789999999999999999999999775443
No 49
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=28.02 E-value=1.3e+02 Score=23.36 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=34.5
Q ss_pred CCCcEEEEeecCCCC--CCCHHHHHHHHHcCCeEEEeChHHHHHHHHHhhh-ccc
Q 030825 107 PIPEILILGCGRYIE--PVNPELRQFIRSTGMKLEAIDSRNAASTYNILNE-EGR 158 (171)
Q Consensus 107 p~PEvLIIGTG~~~~--~l~p~l~~~l~~~GI~vEvMdT~aAcrTyNiL~s-EGR 158 (171)
+++.-+|+|+-.... ..-.+-.+.|++.||.|++|+-..-..-|+.-+. .+|
T Consensus 109 ~gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI~V~~~~~~e~~~~w~~fv~~~~~ 163 (190)
T 2nyt_A 109 KNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEG 163 (190)
T ss_pred CCccEEEEEeecCCcCChHHHHHHHHHHHCCCEEEEecHHHHHHHHHHHHHccCC
Confidence 478889998754421 1112566789999999999988764445554455 454
No 50
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=27.61 E-value=16 Score=30.63 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=27.7
Q ss_pred hCCCCcEEEEeecCCCCCCCHHHHHHHHHc-CCeEEEeCh
Q 030825 105 VRPIPEILILGCGRYIEPVNPELRQFIRST-GMKLEAIDS 143 (171)
Q Consensus 105 l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~-GI~vEvMdT 143 (171)
+....|++||++|.... .--+..+.|++. ||.+++++.
T Consensus 216 ~~~g~dv~iia~G~~~~-~a~~Aa~~L~~~~Gi~v~vi~~ 254 (342)
T 2bfd_B 216 IQEGSDVTLVAWGTQVH-VIREVASMAKEKLGVSCEVIDL 254 (342)
T ss_dssp EECCSSEEEEECTTHHH-HHHHHHHHHHHHHCCCEEEEEC
T ss_pred eccCCCEEEEEECHHHH-HHHHHHHHHHhhcCCCEEEEee
Confidence 34568999999998642 334556677777 999998863
No 51
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=27.31 E-value=25 Score=24.44 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=27.1
Q ss_pred EEEEeecCCCCCCCHHHHHHHHHcCCe--EEEeChHHHHH
Q 030825 111 ILILGCGRYIEPVNPELRQFIRSTGMK--LEAIDSRNAAS 148 (171)
Q Consensus 111 vLIIGTG~~~~~l~p~l~~~l~~~GI~--vEvMdT~aAcr 148 (171)
+++-|+|-..-.+-..+++.+.++||. ++..+...+-.
T Consensus 8 lvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~ 47 (109)
T 2l2q_A 8 LLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSE 47 (109)
T ss_dssp EEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHH
T ss_pred EEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHh
Confidence 556677777557778899999999986 45555555443
No 52
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=26.79 E-value=71 Score=21.53 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=29.9
Q ss_pred CCcEEEEeecCC---CCCCCHHHHHHHHHcCCeEEEeChH
Q 030825 108 IPEILILGCGRY---IEPVNPELRQFIRSTGMKLEAIDSR 144 (171)
Q Consensus 108 ~PEvLIIGTG~~---~~~l~p~l~~~l~~~GI~vEvMdT~ 144 (171)
...++|+.+|.. .......++++|.++||.++..|..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~ 53 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDIL 53 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESS
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECC
Confidence 356999988763 4567889999999999999988664
No 53
>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*
Probab=26.69 E-value=41 Score=30.28 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=29.7
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAA 147 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~aAc 147 (171)
.++- ||-|-.... +|++.+.++++||.+|+.+|.|-.
T Consensus 352 ga~R--IgHGv~l~~-dp~l~~~l~~~~I~levCP~SN~~ 388 (508)
T 3lgd_A 352 NTTR--IGHGFALSK-HPAVRTYSWKKDIPIEVCPISNQV 388 (508)
T ss_dssp TCSS--EEECTTGGG-CHHHHHHHHHTTCCEEECHHHHHH
T ss_pred CCce--eeeeEecCc-cHHHHHHHHhcCCeEEECcchHHH
Confidence 4554 588877543 799999999999999999988753
No 54
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=26.42 E-value=34 Score=30.08 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=29.4
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 142 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMd 142 (171)
.++|+|+..+.....-.-++.+.|++.||.+|++.
T Consensus 419 ~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~ 453 (517)
T 4g85_A 419 ETQVLVASAQKKLLEERLKLVSELWDAGIKAELLY 453 (517)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 46899999988876556678999999999999974
No 55
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=26.39 E-value=46 Score=26.32 Aligned_cols=42 Identities=14% Similarity=-0.046 Sum_probs=27.8
Q ss_pred cEEEEeecCCCCCC-CHHHHHHHHHcCCeEEEeChHHHHHHHH
Q 030825 110 EILILGCGRYIEPV-NPELRQFIRSTGMKLEAIDSRNAASTYN 151 (171)
Q Consensus 110 EvLIIGTG~~~~~l-~p~l~~~l~~~GI~vEvMdT~aAcrTyN 151 (171)
-+++-=||.-...- ..++.+.|++.|..|.++=|++|+++.+
T Consensus 7 ~IllgiTGsiaayk~~~~ll~~L~~~g~eV~vv~T~~A~~vl~ 49 (207)
T 3mcu_A 7 RIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYTVQSTNT 49 (207)
T ss_dssp EEEEEECSCGGGGTTSHHHHHHHHHTTCEEEEEECC-------
T ss_pred EEEEEEEChHHHHHHHHHHHHHHHhCCCEEEEEEehHHHHHHH
Confidence 46666677644343 7899999999999999999999995543
No 56
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=25.89 E-value=18 Score=30.45 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=27.9
Q ss_pred hCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 105 VRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 105 l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
+....|++||++|.... .--+..+.|++.||.+++.+.
T Consensus 213 ~~~g~dv~iia~Gs~~~-~a~~Aa~~L~~~Gi~v~vv~~ 250 (341)
T 2ozl_B 213 ERQGTHITVVSHSRPVG-HCLEAAAVLSKEGVECEVINM 250 (341)
T ss_dssp EECCSSEEEEECSTHHH-HHHHHHHHHHTTTCCEEEEEC
T ss_pred eccCCCEEEEEeCHHHH-HHHHHHHHHHhcCCCeEEEee
Confidence 44568999999998643 234566778889998888753
No 57
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=25.68 E-value=29 Score=29.71 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=29.1
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeC
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 142 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMd 142 (171)
.++++|+..+.....-.-++.+.|++.||.+|++.
T Consensus 366 ~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~ 400 (464)
T 4g84_A 366 ETQVLVASAQKKLLEERLKLVSELWDAGIKAELLY 400 (464)
T ss_dssp CCCEEEECSSSSCHHHHHHHHHHHHHTTCCEECCS
T ss_pred cceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 56899999888766555678999999999999874
No 58
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=25.22 E-value=50 Score=25.86 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=34.8
Q ss_pred EEEEeecCCCCCCCHHHHHHHHHc-CCeEEEeChHHHHHHHHHh
Q 030825 111 ILILGCGRYIEPVNPELRQFIRST-GMKLEAIDSRNAASTYNIL 153 (171)
Q Consensus 111 vLIIGTG~~~~~l~p~l~~~l~~~-GI~vEvMdT~aAcrTyNiL 153 (171)
+++-=||.--..-..++.+.|++. |..|.++=|++|++...-+
T Consensus 3 IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~T~~A~~fi~~~ 46 (197)
T 1sbz_A 3 LIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELE 46 (197)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHH
T ss_pred EEEEEeChHHHHHHHHHHHHHHhccCCEEEEEECchHHHHhHHH
Confidence 455557776555578889999998 9999999999999998865
No 59
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=24.88 E-value=30 Score=27.88 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=51.5
Q ss_pred ceEEEEcCCeEEECCEEEeecEEEeCCceee------cCCCCCCCCChhhhh-hhhhhC------CCCcEEEEeecCCCC
Q 030825 55 LRFQGYTDTGFTVNGVQYEGSLLCIGNLLLS------WTPKKFSEITPNCLS-IFQLVR------PIPEILILGCGRYIE 121 (171)
Q Consensus 55 ~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~------W~~~~~~~l~~e~L~-~l~~l~------p~PEvLIIGTG~~~~ 121 (171)
.+|++|+... +.|....+|++++.++-.. ++.++ . ..||.+ +-+.+. +-||+++|==|..+.
T Consensus 23 ~rIE~fDiSh--~~G~~~V~smVvf~~g~p~k~~YRrf~i~~-~--g~DDya~m~Evl~RR~~r~~~PDLiliDGGkgQl 97 (220)
T 2nrt_A 23 YRIEGIDISH--LQGKYTVASLVVFEDGFPKKGDYRRYKIEQ-D--HPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQV 97 (220)
T ss_dssp CEEEEEEEEE--ETTTEEEEEEEEEETTEECGGGCEEEEEEC-S--SCCHHHHHHHHHHHHHTTSCCCSEEEESSSHHHH
T ss_pred CEEEEEECCc--cCCccceEEEEEEeCCccChhhCceeeCCC-C--CCCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHH
Confidence 4788888765 5788888999999666432 23333 1 235554 222221 459999998888765
Q ss_pred CCCHHHHHHHHHcCCeEEEeCh
Q 030825 122 PVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 122 ~l~p~l~~~l~~~GI~vEvMdT 143 (171)
. ...+.|.+.|+.+.+...
T Consensus 98 ~---~a~~vl~~lg~~i~v~gl 116 (220)
T 2nrt_A 98 N---AAIEALKEIGKDCPVVGL 116 (220)
T ss_dssp H---HHHHHHHHTTCCCCEEEE
T ss_pred H---HHHHHHHHcCCCCeEEEE
Confidence 3 456667788876555433
No 60
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=23.95 E-value=26 Score=27.02 Aligned_cols=83 Identities=14% Similarity=0.243 Sum_probs=48.0
Q ss_pred ceEEEEcCCeEEECCEEEeecEEEeCCceee------cCCCCCCCCChhhhhh-hhhhC------CCCcEEEEeecCCCC
Q 030825 55 LRFQGYTDTGFTVNGVQYEGSLLCIGNLLLS------WTPKKFSEITPNCLSI-FQLVR------PIPEILILGCGRYIE 121 (171)
Q Consensus 55 ~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~------W~~~~~~~l~~e~L~~-l~~l~------p~PEvLIIGTG~~~~ 121 (171)
.+|++|+... +.|..-.+|++++.++-.. ++.++ . ..||.+. -+.+. +-||+++|==|..+.
T Consensus 18 ~RIE~fDiSh--~~G~~~VasmVVf~~g~p~K~~YRrf~I~~-~--g~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl 92 (159)
T 2nrr_A 18 YRIEGIDISH--LQGKYTVASLVVFEDGFPKKGDYRRYKIEQ-D--HPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQV 92 (159)
T ss_dssp CEEEEEEEEC--C---CCEEEEEEEETTEECGGGCEEEEC--------CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHH
T ss_pred CEEEEEECCc--cCCccceEEEEEEeCCccChhhCceeecCC-C--CCCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHH
Confidence 4788887665 4677777999998665432 33443 1 3355542 22221 459999998888765
Q ss_pred CCCHHHHHHHHHcCCeEEEeChHH
Q 030825 122 PVNPELRQFIRSTGMKLEAIDSRN 145 (171)
Q Consensus 122 ~l~p~l~~~l~~~GI~vEvMdT~a 145 (171)
....+.|.+.|+.+.+...++
T Consensus 93 ---~aA~~vl~elg~~i~v~glAK 113 (159)
T 2nrr_A 93 ---NAAIEALKEIGKDCPVVGLAK 113 (159)
T ss_dssp ---HHHHHHHHHTTCCCCEEEEC-
T ss_pred ---HHHHHHHHHcCCCccEEEEEc
Confidence 346667778887665554444
No 61
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=23.92 E-value=15 Score=33.67 Aligned_cols=35 Identities=9% Similarity=0.313 Sum_probs=26.1
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
++|++||++|... ..--+..+.|++.||.+++.|.
T Consensus 498 d~dv~iva~G~~v-~~al~Aa~~L~~~Gi~v~Vidl 532 (616)
T 3mos_A 498 DDQVTVIGAGVTL-HEALAAAELLKKEKINIRVLDP 532 (616)
T ss_dssp SEEEEEECCTHHH-HHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCEEEEEeCHHH-HHHHHHHHHHHhcCCCEEEEEe
Confidence 3669999999643 2334566788899999999854
No 62
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=23.10 E-value=19 Score=33.37 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 108 ~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
.+|+.||++|... ...-+..+.|++.||.+++.|.
T Consensus 549 g~dvtiia~G~~v-~~al~Aa~~L~~~Gi~~~Vi~~ 583 (663)
T 3kom_A 549 DAKLTIVATGSEV-ELAVKVANEFEKKGIKLNVASI 583 (663)
T ss_dssp TCSCEEEECTTHH-HHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCEEEEEecHHH-HHHHHHHHHHHhcCCCeEEEEc
Confidence 6899999999863 2334566789999999999864
No 63
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=22.42 E-value=38 Score=23.52 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=24.4
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH
Q 030825 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR 144 (171)
Q Consensus 109 PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~ 144 (171)
..++|+|.|. +-..+.+.|.+.|..|-+.|..
T Consensus 7 ~~v~I~G~G~----iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 7 YEYIVIGSEA----AGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CSEEEECCSH----HHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCCH----HHHHHHHHHHHCCCeEEEEECC
Confidence 4688999876 4567788888888888887653
No 64
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=22.31 E-value=1.3e+02 Score=20.68 Aligned_cols=42 Identities=7% Similarity=0.188 Sum_probs=32.0
Q ss_pred hhhhhCCCCcEEEEe-ecCCCC-CCCHHHHHHHHHcCCeEEEeC
Q 030825 101 IFQLVRPIPEILILG-CGRYIE-PVNPELRQFIRSTGMKLEAID 142 (171)
Q Consensus 101 ~l~~l~p~PEvLIIG-TG~~~~-~l~p~l~~~l~~~GI~vEvMd 142 (171)
+++.+...=+++++- .|.... -..-++.+.+++.||.+|+.+
T Consensus 72 i~~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viP 115 (117)
T 3hh1_A 72 VIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPVP 115 (117)
T ss_dssp HHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeC
Confidence 334444456788888 798854 577889999999999999875
No 65
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=22.29 E-value=92 Score=22.41 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=34.7
Q ss_pred CCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 93 EITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 93 ~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
..+.+.|+. ++...--+.|||.+.+.-.+...+.++|.+.|..+--.+.
T Consensus 9 ~m~~~~l~~--ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp 57 (144)
T 2d59_A 9 GLTDEDIRE--ILTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNP 57 (144)
T ss_dssp CCCHHHHHH--HHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCHHHHHH--HHcCCCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECC
Confidence 356677773 3331246999999988777777888899999987555544
No 66
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A
Probab=22.02 E-value=32 Score=29.66 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=33.6
Q ss_pred hhhCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHH
Q 030825 103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNA 146 (171)
Q Consensus 103 ~~l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~aA 146 (171)
+.+.|+|.++|+|-|. +...+.+.++..|..|.++|.+.+
T Consensus 199 e~~~P~~rL~IfGAGh----va~ala~~a~~lg~~V~v~D~R~~ 238 (386)
T 2we8_A 199 SSYAPRPRMLVFGAID----FAAAVAQQGAFLGYRVTVCDARPV 238 (386)
T ss_dssp EEECCCCEEEEECCST----HHHHHHHHHHHTTCEEEEEESCTT
T ss_pred EEcCCCCEEEEECCCH----HHHHHHHHHHhCCCEEEEECCchh
Confidence 4456899999999997 456788899999999999998654
No 67
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=21.85 E-value=1.5e+02 Score=19.79 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=26.3
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 109 PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
+.|.|.++ ..-+....++++|.++||.++..|.
T Consensus 4 a~I~vYs~--~~Cp~C~~aK~~L~~~gi~y~~idi 36 (92)
T 2lqo_A 4 AALTIYTT--SWCGYCLRLKTALTANRIAYDEVDI 36 (92)
T ss_dssp SCEEEEEC--TTCSSHHHHHHHHHHTTCCCEEEET
T ss_pred CcEEEEcC--CCCHhHHHHHHHHHhcCCceEEEEc
Confidence 45677765 4567788999999999999998765
No 68
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=21.68 E-value=42 Score=22.08 Aligned_cols=29 Identities=17% Similarity=0.489 Sum_probs=18.9
Q ss_pred EEEeecCC----CCCCCHHHHHHHHHcCCeEEE
Q 030825 112 LILGCGRY----IEPVNPELRQFIRSTGMKLEA 140 (171)
Q Consensus 112 LIIGTG~~----~~~l~p~l~~~l~~~GI~vEv 140 (171)
||-|.|.+ ...+-+.+.++|++.++.++.
T Consensus 39 II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e 71 (82)
T 3fau_A 39 VITGRGNHSQGGVARIKPAVIKYLISHSFRFSE 71 (82)
T ss_dssp EECCC---------CHHHHHHHHHHHTTCCEEE
T ss_pred EEECCCCCCCCCcchHHHHHHHHHHhCCCceee
Confidence 55566663 234778899999999998854
No 69
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=21.56 E-value=60 Score=22.43 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=29.8
Q ss_pred CCCcEEEEeecCCCC---CCCHHHHHHHHHcCCeEEEeChH
Q 030825 107 PIPEILILGCGRYIE---PVNPELRQFIRSTGMKLEAIDSR 144 (171)
Q Consensus 107 p~PEvLIIGTG~~~~---~l~p~l~~~l~~~GI~vEvMdT~ 144 (171)
....|+|+..|.... .....++++|.++||.++..|..
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~ 54 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIF 54 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGG
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECc
Confidence 356799998877643 56677999999999999988654
No 70
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=21.43 E-value=95 Score=22.36 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=23.4
Q ss_pred CCCcceEEEEcCCeEEECCEEEeecEEEeCCceeec
Q 030825 51 PEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSW 86 (171)
Q Consensus 51 ~~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W 86 (171)
.++...|+..+..+..|||+.+.++..+.++-.+.|
T Consensus 78 ~~g~~~l~dl~~ngt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 78 SEGQVMLTPQKNTRTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp TTSCEEEEECTTCCEEETTEECCSCEEECTTCEEEE
T ss_pred CCCeEEEEECCCCCEEECCEEcCCcEECCCCCEEEE
Confidence 355567777777788888888776666654433333
No 71
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=21.24 E-value=2.9e+02 Score=23.27 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=40.0
Q ss_pred cCCeEEECCEEEeecEEEeCCceeecCCCCC----CCCChhhhhhhhhhC-CCCcEEEEeecCCCCCCCHHHHHHHHHcC
Q 030825 61 TDTGFTVNGVQYEGSLLCIGNLLLSWTPKKF----SEITPNCLSIFQLVR-PIPEILILGCGRYIEPVNPELRQFIRSTG 135 (171)
Q Consensus 61 ~~g~f~Ing~~y~gsvii~p~~v~~W~~~~~----~~l~~e~L~~l~~l~-p~PEvLIIGTG~~~~~l~p~l~~~l~~~G 135 (171)
+...+.++|..+..+-+|.-.+..+..+... .-++.+++. ..-+ ..-.++|||.|.- .-++...|++.|
T Consensus 119 ~~~~v~v~g~~~~~d~lViATGs~p~~p~gi~~~~~v~~~~~~~--~l~~~~~~~vvViGgG~~----g~e~A~~l~~~g 192 (464)
T 2eq6_A 119 GPKEVEVGGERYGAKSLILATGSEPLELKGFPFGEDVWDSTRAL--KVEEGLPKRLLVIGGGAV----GLELGQVYRRLG 192 (464)
T ss_dssp ETTEEEETTEEEEEEEEEECCCEEECCBTTBCCSSSEECHHHHT--CGGGCCCSEEEEECCSHH----HHHHHHHHHHTT
T ss_pred cCCEEEEccEEEEeCEEEEcCCCCCCCCCCCCCCCcEEcHHHHH--hhhhhcCCEEEEECCCHH----HHHHHHHHHHCC
Confidence 4567777777777665655444433322111 123334332 2212 2347999998852 334555666666
Q ss_pred CeEEEeC
Q 030825 136 MKLEAID 142 (171)
Q Consensus 136 I~vEvMd 142 (171)
..|.+..
T Consensus 193 ~~Vtlv~ 199 (464)
T 2eq6_A 193 AEVTLIE 199 (464)
T ss_dssp CEEEEEC
T ss_pred CeEEEEE
Confidence 6666553
No 72
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=20.79 E-value=53 Score=22.88 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEE
Q 030825 107 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEA 140 (171)
Q Consensus 107 p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEv 140 (171)
++..++|+|.|.. ..++.+.+++.|+.+.+
T Consensus 31 ~~~~l~i~G~g~~----~~~~~~~~~~~~~~v~~ 60 (166)
T 3qhp_A 31 QDIVLLLKGKGPD----EKKIKLLAQKLGVKAEF 60 (166)
T ss_dssp GGEEEEEECCSTT----HHHHHHHHHHHTCEEEC
T ss_pred CCeEEEEEeCCcc----HHHHHHHHHHcCCeEEE
Confidence 4667999998864 36677788888876665
No 73
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=20.77 E-value=1.5e+02 Score=24.14 Aligned_cols=32 Identities=9% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 107 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 107 p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
-+||+||.... -.....+.+++.||.+-+++.
T Consensus 95 l~PDLIi~~~~-----~~~~~~~~~~~~GiPvv~~~~ 126 (346)
T 2etv_A 95 LQPDVVFITYV-----DRXTAXDIQEXTGIPVVVLSY 126 (346)
T ss_dssp HCCSEEEEESC-----CHHHHHHHHHHHTSCEEEECC
T ss_pred CCCCEEEEeCC-----ccchHHHHHHhcCCcEEEEec
Confidence 35999887542 134566778889999999863
No 74
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=20.54 E-value=55 Score=23.31 Aligned_cols=33 Identities=27% Similarity=0.568 Sum_probs=25.1
Q ss_pred CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 030825 107 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS 143 (171)
Q Consensus 107 p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT 143 (171)
+...++|+|.|. +-..+.+.|.+.|..|-+.+.
T Consensus 18 ~~~~v~IiG~G~----iG~~la~~L~~~g~~V~vid~ 50 (155)
T 2g1u_A 18 KSKYIVIFGCGR----LGSLIANLASSSGHSVVVVDK 50 (155)
T ss_dssp CCCEEEEECCSH----HHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEECCCH----HHHHHHHHHHhCCCeEEEEEC
Confidence 456799999986 334577788889988888764
No 75
>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}
Probab=20.36 E-value=33 Score=29.54 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=34.5
Q ss_pred hhhCCCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Q 030825 103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAA 147 (171)
Q Consensus 103 ~~l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~aAc 147 (171)
+.+.|+|.++|+|-|. +...+.+.++..|..|.++|.+.+-
T Consensus 194 e~~~p~~~L~I~GaGh----va~aLa~la~~lgf~V~v~D~R~~~ 234 (362)
T 3on5_A 194 HIYSPKERLIIFGAGP----DVPPLVTFASNVGFYTVVTDWRPNQ 234 (362)
T ss_dssp EEECCCEEEEEECCST----THHHHHHHHHHHTEEEEEEESCGGG
T ss_pred EecCCCCEEEEECCCH----HHHHHHHHHHHCCCeEEEECCCccc
Confidence 4567899999999997 5567889999999999999987653
No 76
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=20.31 E-value=74 Score=25.13 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=26.4
Q ss_pred CcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHH
Q 030825 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRN 145 (171)
Q Consensus 109 PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~a 145 (171)
.-++|+|.| ....+.+.++++|+.+.+.+...
T Consensus 3 m~Ililg~g-----~~~~l~~a~~~~G~~v~~~~~~~ 34 (334)
T 2r85_A 3 VRIATYASH-----SALQILKGAKDEGFETIAFGSSK 34 (334)
T ss_dssp SEEEEESST-----THHHHHHHHHHTTCCEEEESCGG
T ss_pred eEEEEECCh-----hHHHHHHHHHhCCCEEEEEECCC
Confidence 358899998 45678899999999999988764
Done!