BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030827
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5 OS=Dictyostelium discoideum
GN=chmp5 PE=3 SV=1
Length = 215
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 104/144 (72%), Gaps = 2/144 (1%)
Query: 2 RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
RPGPAQ AIK +A+RVL+QK+MYE QRD + + +FN++Q FA+E ++D T++A+K
Sbjct: 52 RPGPAQNAIKQKAIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVSAMKQG 111
Query: 62 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
K++K +K +KI+D+D++QDEM DL+D ++EIQE+LGR+Y PD +DE EL EL ++
Sbjct: 112 AKDMKTQLKHIKIEDVDDMQDEMQDLLDYNNEIQESLGRAYQTPDTLDESELEAELMSMG 171
Query: 122 ADMGMEDEAGVPSYLQPDKEPDLD 145
+ +E EA +PSYL P D
Sbjct: 172 EE--LELEASMPSYLMTPSVPTTD 193
>sp|Q4QQV8|CHMP5_RAT Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5
PE=2 SV=1
Length = 219
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 16/170 (9%)
Query: 1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
MR GPA+ +K +A+RVLKQKRMYE QRD L Q+FN++Q + + +KD + T+ A+K
Sbjct: 52 MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111
Query: 61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
KE+K K VKI I++LQD++ D+M+ ++EIQE LGRSY P ++DED+L ELDAL
Sbjct: 112 GVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDAL 170
Query: 121 ------EADMGMEDEA--------GVPSYLQPDKEPDLDAELNLPTAPSG 156
+ D DEA GVP+ + +K+ L E LP P+
Sbjct: 171 GDELLADEDSSYLDEAASAPAIPEGVPTDTK-NKDGVLVDEFGLPQIPAS 219
>sp|Q9D7S9|CHMP5_MOUSE Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=2
SV=1
Length = 219
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 16/170 (9%)
Query: 1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
MR GPA+ +K +A+RVLKQKRMYE QRD L Q+FN++Q + + +KD + T+ A+K
Sbjct: 52 MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111
Query: 61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
KE+K K VKI I++LQD++ D+M+ ++EIQE LGRSY P ++DED+L ELDAL
Sbjct: 112 GVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDAL 170
Query: 121 ------EADMGMEDEA--------GVPSYLQPDKEPDLDAELNLPTAPSG 156
+ D DEA GVP+ + +K+ L E LP P+
Sbjct: 171 GDELLADEDSSYLDEAASAPAIPEGVPTDTK-NKDGVLVDEFGLPQIPAS 219
>sp|Q9VVI9|CHMP5_DROME Charged multivesicular body protein 5 OS=Drosophila melanogaster
GN=CG6259 PE=1 SV=2
Length = 226
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 23/174 (13%)
Query: 1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
MR GPA+ ++K +A+RVLKQK+ YE Q + L NQ+FN++Q +A++ +KD Q T+ A+K
Sbjct: 52 MREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLKDTQATVAAMKD 111
Query: 61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
K++K K + I I+++QD+M D+ + + E+QE LGR+Y +P ++D+D+L ELDAL
Sbjct: 112 GVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALGRTYGMP-EVDDDDLQAELDAL 170
Query: 121 EADMGMEDEAGVPSYL--------QPDKEPDLDA-----------ELNLPTAPS 155
++ ++D+ SYL P +EP D+ E LP P+
Sbjct: 171 GDEIALDDDT---SYLDDVVKAPEAPSREPGADSIVPGKSTIETDEFGLPKIPT 221
>sp|Q5RBR3|CHMP5_PONAB Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2
SV=1
Length = 219
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 105/170 (61%), Gaps = 16/170 (9%)
Query: 1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
MR GPA+ +K +A+RVLKQKRMYE QRD L Q+FN++Q + + +KD + T+ A+K
Sbjct: 52 MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111
Query: 61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
KE+K K VKI I++LQD++ D+M+ ++EIQE L RSY P ++DED+L ELDAL
Sbjct: 112 GVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDAL 170
Query: 121 ------EADMGMEDEA--------GVPSYLQPDKEPDLDAELNLPTAPSG 156
+ D DEA GVP+ + +K+ L E LP P+
Sbjct: 171 GDELLADEDSSYLDEAASAPAIPEGVPTDTK-NKDGVLVDEFGLPQIPAS 219
>sp|Q9NZZ3|CHMP5_HUMAN Charged multivesicular body protein 5 OS=Homo sapiens GN=CHMP5 PE=1
SV=1
Length = 219
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 105/170 (61%), Gaps = 16/170 (9%)
Query: 1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
MR GPA+ +K +A+RVLKQKRMYE QRD L Q+FN++Q + + +KD + T+ A+K
Sbjct: 52 MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111
Query: 61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
KE+K K VKI I++LQD++ D+M+ ++EIQE L RSY P ++DED+L ELDAL
Sbjct: 112 GVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDAL 170
Query: 121 ------EADMGMEDEA--------GVPSYLQPDKEPDLDAELNLPTAPSG 156
+ D DEA GVP+ + +K+ L E LP P+
Sbjct: 171 GDELLADEDSSYLDEAASAPAIPEGVPTDTK-NKDGVLVDEFGLPQIPAS 219
>sp|Q7T339|CHMP5_DANRE Charged multivesicular body protein 5 OS=Danio rerio GN=chmp5 PE=2
SV=1
Length = 220
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Query: 1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
MR GP++ +K +AMRVLKQKRMYEGQRD L Q+FN++Q + + +KD + T+ A+K
Sbjct: 52 MRDGPSKNMVKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKI 111
Query: 61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGE 116
KE+K K VKI I++LQD++ D+M+ ++E+QE L RSY P +IDED+L E
Sbjct: 112 GAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYGTP-EIDEDDLEAE 166
>sp|Q5FW29|CHMP5_XENTR Charged multivesicular body protein 5 OS=Xenopus tropicalis
GN=chmp5 PE=2 SV=1
Length = 219
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Query: 1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
MR GP++ +K +A+RVLKQKRMYE QRD L Q+FN++Q +A + +KD + T+ A+K
Sbjct: 52 MREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKV 111
Query: 61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGE 116
KE+K K VKI I++LQD++ D+M+ ++EIQE L RSY P +IDED+L E
Sbjct: 112 GAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTP-EIDEDDLEAE 166
>sp|Q6DD52|CHMP5_XENLA Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5
PE=2 SV=1
Length = 219
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 82/116 (70%), Gaps = 1/116 (0%)
Query: 1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
MR GP++ +K +A+RVLKQKRMYE QRD L Q+FN++Q + + +KD + T+ A+K
Sbjct: 52 MREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKV 111
Query: 61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGE 116
KE+K K VKI I++LQD++ D+M+ ++EIQE L RSY P +IDED+L E
Sbjct: 112 GAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTP-EIDEDDLEAE 166
>sp|O74422|YQ56_SCHPO Uncharacterized protein C162.06c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC162.06c PE=3 SV=1
Length = 210
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 2 RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
RPGP Q A+K RAM VL+QK++YE Q L Q+FN++Q A +E +K+ T+ ++
Sbjct: 53 RPGPGQTALKQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQET 112
Query: 62 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL- 120
++LK K V I+ I+ LQDE+ D MD + E+ E LG++ DI+ DE + +
Sbjct: 113 ARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEVLGQNMT---DINVDEEELDAELEA 169
Query: 121 ----EADMGMEDEAGVPSYLQPDKE 141
+ +G + A PSYL P E
Sbjct: 170 LQQESSWLGDQSTAEKPSYLMPSNE 194
>sp|Q8IL52|YSNF1_PLAF7 Uncharacterized protein PF14_0397 OS=Plasmodium falciparum (isolate
3D7) GN=PF14_0397 PE=3 SV=2
Length = 229
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Query: 9 AIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGM 68
+++ +A ++++K++YE ++ FN+DQ+ +A++ ++ + T ALK+ +K LK
Sbjct: 60 SLRNKAANIIQKKKVYENNKESTMGIQFNIDQIKYANDNVQLSIDTYKALKNTSKVLKKN 119
Query: 69 MKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMED 128
+K V I I+ LQD++ D ++ + EI L SY++P ++DE E+ EL +E + E+
Sbjct: 120 IKKVNINKIEKLQDDLFDYIEDTKEIGNILSSSYDIPLNLDEQEIDAELALIEDSILDEN 179
Query: 129 --EAGVPSYLQPDK 140
+ + SY++ DK
Sbjct: 180 VEQDNIASYIEDDK 193
>sp|Q03390|VPS60_YEAST Vacuolar protein-sorting-associated protein 60 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS60 PE=1
SV=2
Length = 229
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 16/162 (9%)
Query: 2 RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
R Q +++ +A+++L +++ E +D L +Q++++ Q ++ +++ T+ ALK
Sbjct: 58 RSNNKQPSLRKQALKILNKRKQLENMKDSLDSQSWSMTQAQLTNDNLQNTMITINALKQT 117
Query: 62 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVP--DDIDEDELMGELDA 119
N +K + I + ++QDEM+DL++ E+QE L + N DDI + EL ELDA
Sbjct: 118 NNAMKAQYGKINIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDA 177
Query: 120 L-EADMGM---EDEAG--VPSYL----QP----DKEPDLDAE 147
L + D + E+ G +PSYL P D+EP+LD E
Sbjct: 178 LAQEDFTLPTSENSLGNDMPSYLLGANAPPAFIDEEPNLDTE 219
>sp|Q9SZE4|VP322_ARATH Vacuolar protein sorting-associated protein 32 homolog 2
OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1
Length = 219
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
K A++ LK+KR+YEGQ + L N + EG K +T+ AL+S +K M K
Sbjct: 56 KRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQK 115
Query: 71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDEL 113
I D+D DE+ + + +IQE L D DEDEL
Sbjct: 116 ATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDEL 158
>sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1
OS=Arabidopsis thaliana GN=VPS32.1 PE=1 SV=1
Length = 213
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
K A++ LK+KR+YE Q + L N + EG K +T+ AL++ +K M K
Sbjct: 57 KRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQK 116
Query: 71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPD 106
I D+D DE+ + + +IQE L + D
Sbjct: 117 ATNIDDVDKTMDEINEQTENMKQIQEALSAPFGAND 152
>sp|Q04272|VPS20_YEAST Vacuolar protein sorting-associated protein 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS20 PE=1
SV=3
Length = 221
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
+R P + +LK+ E +Q NL+ + E +Q + LK+
Sbjct: 49 IRKNPENYKSNMKVRFLLKRIHYQEHLLQQASDQLINLENMVSTLEFKMVEKQFINGLKN 108
Query: 61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSY----NVPDDIDEDELMGE 116
N+ LK + K + ++D L D++ D + +EI ETL RS N DD+D+ E
Sbjct: 109 GNEILKKLNK--EFSNVDELMDDVQDQIAYQNEINETLSRSLVGTSNYEDDLDK-----E 161
Query: 117 LDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQ 166
LDALE+++ P + K ++ + LP+ P G + Q +R +
Sbjct: 162 LDALESELN-------PEKMNNAKVANMPSTEGLPSLPQGEQTEQKEREE 204
>sp|Q5ZJB7|CHMP7_CHICK Charged multivesicular body protein 7 OS=Gallus gallus GN=CHMP7
PE=2 SV=1
Length = 448
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 30/160 (18%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKD---AQQT----MTALKSANK 63
K A+R LK KR E + + L+++ LD V +GI D A QT A ++
Sbjct: 276 KQLALRCLKSKRRTERRIEELHSK---LDAV----QGILDRIYASQTDQMVFNAYQAGVG 328
Query: 64 ELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEAD 123
LK MK V ++ +NL D++ +L D E+ +TL + ++D +EL ELD+L
Sbjct: 329 ALKLSMKDVTVEKAENLVDQIQELCDTQDEVAQTLAGAGVNGLEMDSEELEKELDSL--- 385
Query: 124 MGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHD 163
++D A P +L P +P SG A A D
Sbjct: 386 --LQDSAKEPVHLHP-----------VPQKDSGFAGAISD 412
>sp|Q9P7F7|SNF7_SCHPO Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=snf7 PE=3 SV=1
Length = 222
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
K A+ LK+K+M+E + + N++Q F+ + +T+ A++ + +K + +
Sbjct: 57 KRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQR 116
Query: 71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
+ +D + D++ D +S EI + + +IDEDEL ELD L+
Sbjct: 117 GMDADKVDQIMDKIRDQQTISEEISTMISTPVGLNAEIDEDELANELDELQ 167
>sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2
OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1
Length = 216
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 7 QEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELK 66
+E K RA+ LK+KR E + N++Q E + +LK N +K
Sbjct: 51 REKRKDRALLALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIK 110
Query: 67 GMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM 126
+ V + D+ L D+ + E+ LG + DE+E++ E D LE+ + +
Sbjct: 111 AIQSEVNLDDVQKLMDDTAEAKAYQDELSAILGEKLSAE---DEEEILAEFDNLESLLIV 167
Query: 127 EDEAGVPSY-LQPDKEPDLDAELNLPTAPSGHASAQHD 163
ED VP+ L P+ EP+ +++LP P+ A ++
Sbjct: 168 EDMPEVPTTELMPE-EPE---KMDLPDVPTKAPVASNE 201
>sp|Q6FW96|SNF7_CANGA Vacuolar-sorting protein SNF7 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SNF7
PE=3 SV=1
Length = 228
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
K A LK+K++YEGQ L +Q +L+Q F+ E +TM A+K K +K +
Sbjct: 58 KTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHS 117
Query: 71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGR 100
+ I +D DE+ + +++ EI + + R
Sbjct: 118 GLDIDRVDETMDEIREQVELGEEISDAISR 147
>sp|Q54KZ4|CHMP6_DICDI Charged multivesicular body protein 6 OS=Dictyostelium discoideum
GN=chmp6 PE=3 SV=2
Length = 218
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
K +A+ LK+K+ E D + N++++ E + + +LK N+ LK + K
Sbjct: 57 KNQALLALKKKKYQEKMLDESFANLQNIEELIANVEQAEIQVRIFESLKQGNESLKEIQK 116
Query: 71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEA 130
+ ++D++NL +E + + ++I E L ++ +ED+L+ ELD +E + +
Sbjct: 117 EMSLEDVENLMEETAEAIQYQNDISEALSGKFSKE---EEDDLLNELDEMEKQLNAQQYP 173
Query: 131 GVP 133
VP
Sbjct: 174 KVP 176
>sp|Q8GXN6|VP201_ARATH Vacuolar protein sorting-associated protein 20 homolog 1
OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1
Length = 219
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 7 QEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELK 66
+E K RA+ L++KR E + N++Q E + +LK N +K
Sbjct: 51 REKRKDRALLALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIK 110
Query: 67 GMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM 126
+ + + D+ L D+ D E+ LG + DE++++ E D LE+ + +
Sbjct: 111 AIQSELDLDDVQKLMDDTADAKAYQDELNAILGEKLSAE---DEEDILAEFDNLESQLIV 167
Query: 127 EDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQH 162
++ VP+ KE + +L+LP P+ A +
Sbjct: 168 DEMPEVPT-----KESEESEKLDLPDVPTKTPVASN 198
>sp|Q6BSH2|SNF7_DEBHA Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SNF7 PE=3 SV=2
Length = 226
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
KA A LK+K+ YE + NQ +L+ + EG +TM A+K + +K +
Sbjct: 57 KALAKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHG 116
Query: 71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
+ ++N D++ + ++++ EI E + R + +DEDEL EL L+
Sbjct: 117 EYDVDKVENTMDDIREQVELADEISEAISRPVGT-EFVDEDELDEELAMLQ 166
>sp|Q5ZL55|CHMP6_CHICK Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6
PE=2 SV=3
Length = 200
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 7 QEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELK 66
+E K +AM +LK+KR E D NQ NL+++ E + + + LK N+ L
Sbjct: 53 KEGKKEKAMLLLKKKRYQEQLLDKTDNQISNLERMVQDIEFTQIEMKVIEGLKIGNECLN 112
Query: 67 GMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
M + + I++++ + E D ++ +I E L S + DED ++ EL+A+
Sbjct: 113 KMHQVMSIEEVERIIGETQDAVEYQRQIDEILAGSLT---EEDEDAILEELNAI 163
>sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=Mus musculus GN=Chmp7 PE=1
SV=1
Length = 451
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKD---AQQT----MTALKSANK 63
K A+R LK K+ E + + L+ + LD V +GI D A QT A ++
Sbjct: 278 KQLALRSLKAKQRTEKRIEALHAK---LDTV----QGILDRIYASQTDQMVFNAYQAGVG 330
Query: 64 ELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEAD 123
LK MK V ++ ++L D++ +L D E+ +TL D D +EL ELD L D
Sbjct: 331 ALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILLQD 390
Query: 124 MGME 127
E
Sbjct: 391 TTTE 394
>sp|P0CR54|SNF7_CRYNJ Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SNF7 PE=3 SV=1
Length = 220
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%)
Query: 14 AMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK 73
AM L+QK+ +E + D + L+ A E +TM A+K LKG+ +
Sbjct: 61 AMAALRQKKAHENELDRIAGTRLTLETQVNAIESANLNAETMVAMKKGADALKGIHSNLT 120
Query: 74 IQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELM 114
+ +D D++ + MD++++I + + + +DED+L
Sbjct: 121 AEGVDATMDKIREQMDLTNDISDAISNPVGMGIVLDEDDLK 161
>sp|P0CR55|SNF7_CRYNB Vacuolar-sorting protein SNF7 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SNF7 PE=3 SV=1
Length = 220
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%)
Query: 14 AMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK 73
AM L+QK+ +E + D + L+ A E +TM A+K LKG+ +
Sbjct: 61 AMAALRQKKAHENELDRIAGTRLTLETQVNAIESANLNAETMVAMKKGADALKGIHSNLT 120
Query: 74 IQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELM 114
+ +D D++ + MD++++I + + + +DED+L
Sbjct: 121 AEGVDATMDKIREQMDLTNDISDAISNPVGMGIVLDEDDLK 161
>sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7 OS=Pongo abelii GN=CHMP7 PE=2
SV=1
Length = 453
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKD---AQQT----MTALKSANK 63
K A+R LK K+ E + + L+ + LD V +GI D A QT A ++
Sbjct: 278 KQLALRSLKAKQRTEKRIEALHAK---LDTV----QGILDRIYASQTDQMVFNAYQAGVG 330
Query: 64 ELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEAD 123
LK MK V ++ ++L D++ +L D E+ +TL D D +EL ELD L D
Sbjct: 331 ALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILLQD 390
Query: 124 MGME 127
E
Sbjct: 391 TTKE 394
>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo sapiens GN=CHMP7 PE=1
SV=1
Length = 453
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKD---AQQT----MTALKSANK 63
K A+R LK K+ E + + L+ + LD V +GI D A QT A ++
Sbjct: 278 KQLALRSLKAKQRTEKRIEALHAK---LDTV----QGILDRIYASQTDQMVFNAYQAGVG 330
Query: 64 ELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEAD 123
LK MK V ++ ++L D++ +L D E+ +TL D D +EL ELD L D
Sbjct: 331 ALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILLQD 390
Query: 124 MGME 127
E
Sbjct: 391 TTKE 394
>sp|Q86K93|CHMP7_DICDI Charged multivesicular body protein 7 OS=Dictyostelium discoideum
GN=chmp7 PE=3 SV=1
Length = 477
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 37 NLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQE 96
N+ ++ F+ E K QQ + +L + LK + + + + +D++ D+ D + EI +
Sbjct: 313 NIHEILFSIESAKSNQQIIESLCTGVSTLKKVNQEISVDQVDSILDDYQDAITNQREIDD 372
Query: 97 TLGRSYNVPD-----DIDEDELMGELDALEAD 123
+ +N + DIDED+L ELD + D
Sbjct: 373 AMKSGFNSVESLSSADIDEDQLEKELDQMLQD 404
>sp|Q6PBQ2|CHMP7_DANRE Charged multivesicular body protein 7 OS=Danio rerio GN=chmp7 PE=2
SV=1
Length = 457
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 7 QEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQ---TMTALKSANK 63
+E K++A+R L+ + E + D L+ Q L+ V + I ++Q M A ++
Sbjct: 265 KEGKKSQALRCLRGSKRVEKKADRLFAQ---LETVKGILDRIANSQTDRLVMQAYQAGVA 321
Query: 64 ELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLG 99
L+ +K V ++ +NL D++ +L D E+ +TL
Sbjct: 322 ALRISLKGVTVERAENLVDQIQELCDTQDEVNQTLA 357
>sp|Q96CF2|CHM4C_HUMAN Charged multivesicular body protein 4c OS=Homo sapiens GN=CHMP4C
PE=1 SV=1
Length = 233
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS---ANKELKG 67
K A++ LK+K+ +E Q L L + F E ++++ L++ A K +K
Sbjct: 62 KRAALQALKRKKRFEKQ---LTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKS 118
Query: 68 MMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDED 111
+ + + + ID+L E+ + D++ EI E + DD DED
Sbjct: 119 VHENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDED 162
>sp|Q503V0|CHMP6_DANRE Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2
SV=3
Length = 206
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 33 NQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSH 92
NQ NL+++ E + + + LK N LK M + + I++++ + DE D ++
Sbjct: 79 NQISNLERMVQDIEFAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDETHDAIEYQK 138
Query: 93 EIQETLGRSYNVPDDIDEDELMGELDAL---EADMGMEDEAGVPSYLQPDKEP 142
+I E L S DE+ ++ EL+A+ EAD+ + + G P++EP
Sbjct: 139 QIDEMLAGSLTQE---DEEAVLAELEAITQGEADLELPEVPGEELPEVPEQEP 188
>sp|Q753W3|SNF7_ASHGO Vacuolar-sorting protein SNF7 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SNF7 PE=3
SV=1
Length = 237
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
K A LK+K+++E Q + Q +L+Q ++ E +TM A+K +K + +
Sbjct: 59 KNMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHE 118
Query: 71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGR 100
+ ++ +D DE+ + +++ EI E + R
Sbjct: 119 GLDVERVDETMDEIREQVELGEEISEAISR 148
>sp|O94318|VPS20_SCHPO Vacuolar protein sorting-associated protein 20
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps20 PE=3 SV=1
Length = 226
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSAN---KELKG 67
K A+R LK K++Y G Y Q N++Q+ E + M L+ ++L+
Sbjct: 52 KRGALRALKAKKLYSGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQA 111
Query: 68 MMKTVKIQDIDNLQDEMMDLMD-VSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM 126
M ++ I N +DE M +D V+ +Q + R EDE+ ELD+L +
Sbjct: 112 DMPLERVGRICNDRDEAMSYVDEVNDMLQGRMSRD-------QEDEIQEELDSLIRE--Q 162
Query: 127 EDEAGVPSYLQPDKEPDLDAELNLPTAPSGHA 158
EDE V +P P ++ LP+ P +A
Sbjct: 163 EDEK-VKDLEKPGFTPSTGVDV-LPSVPLKNA 192
>sp|A2VDY3|CHM4A_BOVIN Charged multivesicular body protein 4a OS=Bos taurus GN=CHMP4A PE=2
SV=1
Length = 222
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
K A++ L++K+ E Q L L + F E I++A L++ +G+ K
Sbjct: 59 KRAALQALRRKKRLEQQ---LAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQGLKK 115
Query: 71 TVKIQDIDNLQDEMMDLMD---VSHEIQETLGRSYNVPDDIDED 111
+ DID + + M D+ + V+ +I + + R DD+DED
Sbjct: 116 AYQDMDIDKVDELMADITEQQEVAQQISDAISRPVGFGDDVDED 159
>sp|Q5XGW6|CHM4B_XENLA Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b
PE=2 SV=1
Length = 222
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS---ANKELKG 67
K A++ LK+K+ YE Q L L + F E +++A LK+ A K +K
Sbjct: 60 KRAALQALKRKKRYEKQ---LAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKA 116
Query: 68 MMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDE 112
+ I+ +D L ++ D +++ EI + + + +D DEDE
Sbjct: 117 AHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDE 161
>sp|Q569C1|CHM4C_RAT Charged multivesicular body protein 4c OS=Rattus norvegicus
GN=Chmp4c PE=2 SV=1
Length = 232
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS---ANKELKG 67
K A++ LK+K+ +E Q L L + F E ++++ L++ A K +K
Sbjct: 62 KRAALQALKRKKRFEKQ---LTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKA 118
Query: 68 MMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDID 109
+ + + + ID+L ++ + D++ EI E + D D
Sbjct: 119 VHENMDLNKIDDLMQDITEQQDIAQEISEAFSQRVQFADGFD 160
>sp|Q6GL11|CHM4B_XENTR Charged multivesicular body protein 4b OS=Xenopus tropicalis
GN=chmp4b PE=2 SV=1
Length = 222
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS---ANKELKG 67
K A++ LK+K+ YE Q L L + F E +++A LK+ A K +K
Sbjct: 60 KRAALQALKRKKRYEKQ---LAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKA 116
Query: 68 MMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDE 112
+ I+ +D L ++ D +++ EI + + + +D DEDE
Sbjct: 117 AHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDE 161
>sp|Q5ABD0|SNF7_CANAL Vacuolar-sorting protein SNF7 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=SNF7 PE=3 SV=1
Length = 226
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 14 AMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK 73
A LK+K+ YE + NQ L+ + EG +TM A+K K +K +
Sbjct: 61 AKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYD 120
Query: 74 IQDIDNLQDEMMDLMDVSHEIQETLGR 100
+ +++ DE+ + ++++ EI E + R
Sbjct: 121 VDKVEDTMDEIREQVELADEISEAISR 147
>sp|Q9D7F7|CHM4C_MOUSE Charged multivesicular body protein 4c OS=Mus musculus GN=Chmp4c
PE=2 SV=1
Length = 232
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS---ANKELKG 67
K A++ LK+K+ +E Q L L + F E ++++ L++ A K +K
Sbjct: 62 KRAALQALKRKKRFEKQ---LTQVDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKA 118
Query: 68 MMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDID 109
+ + + ID+L ++ + D++ EI E + D D
Sbjct: 119 VHDNMDLNKIDDLMQDITEQQDIAQEISEAFSQRVQFADGFD 160
>sp|Q6CJL0|SNF7_KLULA Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=SNF7 PE=3 SV=1
Length = 232
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%)
Query: 25 EGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84
E Q D L +Q +LDQ ++ E +T+ A+K +K + K + + +D+ DE+
Sbjct: 71 ESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEI 130
Query: 85 MDLMDVSHEIQETLGR 100
+ ++++ EI E + +
Sbjct: 131 REQVELNQEISEAISK 146
>sp|Q6IQ73|CHM4C_DANRE Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c
PE=2 SV=1
Length = 224
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
K A++ LK+K+ YE Q L L + F E +++A LK+ K M
Sbjct: 60 KRAALQALKRKKRYEKQ---LAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKT 116
Query: 71 TVKIQDIDNLQDEMMDLM---DVSHEIQETLGRSYNVPDDID 109
+ DID + D M D+ +++ EI + + R ++ D
Sbjct: 117 AHENMDIDKVDDLMQDITEQQELAQEISDAISRPVGFGEEFD 158
>sp|Q8CJ40|CROCC_MOUSE Rootletin OS=Mus musculus GN=Crocc PE=1 SV=2
Length = 2009
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 17 VLKQKRMYEGQRDMLYNQTFNL-DQVAFASEGIKDAQQTMTALKSANKEL---KGMMKTV 72
V KQ EG+R L Q L DQ A +++ +DAQ+ L+SAN+ L KG + T
Sbjct: 553 VRKQLSDSEGERRGLEEQLQRLRDQTAASAQAQEDAQREAQRLRSANELLSREKGNL-TH 611
Query: 73 KIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDED 111
+Q E+ ++ QE L R +N +D ED
Sbjct: 612 SLQVTQQQAKELRQELEKLQAAQEELKRQHNQLEDAQED 650
>sp|B8HPC6|RNPH_CYAP4 Ribonuclease PH OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=rph PE=3 SV=1
Length = 239
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 83 EMMDLMDVSHEIQETLGRSYNVPDDID---EDELMGELDALEADMGMEDEAGVPSYL 136
EM+ L + EIQ +GRS D D E L+ + D L+AD G A S++
Sbjct: 80 EMLKLSGRTQEIQRLIGRSLRAALDFDLLGERTLVVDADVLQADAGTRTTAITGSFV 136
>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B
PE=1 SV=1
Length = 224
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS---ANKELKG 67
K A++ LK+K+ YE Q L L + F E +++A LK+ A K +K
Sbjct: 62 KRAALQALKRKKRYEKQ---LAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKA 118
Query: 68 MMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDID 109
+ I +D L ++ D +++ EI + + ++ D
Sbjct: 119 AHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFD 160
>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b
PE=2 SV=2
Length = 224
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS---ANKELKG 67
K A++ LK+K+ YE Q L L + F E +++A LK+ A K +K
Sbjct: 62 KRAALQALKRKKRYEKQ---LAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKA 118
Query: 68 MMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDID 109
+ I +D L ++ D +++ EI + + ++ D
Sbjct: 119 AHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFD 160
>sp|C5B8V3|FOLD_EDWI9 Bifunctional protein FolD OS=Edwardsiella ictaluri (strain 93-146)
GN=folD PE=3 SV=1
Length = 285
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 98 LGRSYNVPDDIDEDELMGELDALEADMGME------------DEAGVPSYLQPDKEPD 143
L RSY +PD DE +L+ +D L AD ++ D + V + PDK+ D
Sbjct: 64 LSRSYALPDSTDEAQLLALIDTLNADAAIDGILVQLPLPAGIDNSRVLERIHPDKDVD 121
>sp|Q9RHF4|SSB2_SALTI Single-stranded DNA-binding protein 2 OS=Salmonella typhi GN=ssb2
PE=3 SV=1
Length = 178
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 128 DEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQH 162
+G+P P EP +D + ++P AP GH+ A+H
Sbjct: 138 SHSGMPPQQHPANEPPMDFDDDIPFAPFGHSVARH 172
>sp|Q9BY43|CHM4A_HUMAN Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A
PE=1 SV=3
Length = 222
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 11 KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
K A++ L++K+ +E Q L L + F E I++A L++ + M K
Sbjct: 59 KRAALQALRRKKRFEQQ---LAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKK 115
Query: 71 TVKIQDIDNLQDEMMDLMD---VSHEIQETLGRSYNVPDDIDED 111
+ DID + + M D+ + V+ +I + + R DD+DED
Sbjct: 116 AYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMGFGDDVDED 159
>sp|P0C149|SNF7_MAGO7 Vacuolar-sorting protein SNF7 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=SNF7 PE=3 SV=1
Length = 226
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Query: 24 YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDE 83
+E D +Q L+Q A E +T+ A+K A K ++ + + ++ +D D+
Sbjct: 73 HEHSLDQTLSQIGTLEQQINAIESANINMETLEAMKKAGKAMEDIHGKLTVEKVDETMDK 132
Query: 84 MMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPD 143
+ + +S EI + + + ID+ +L EL+A ME E L+ P
Sbjct: 133 LREQNALSEEIVNAITNNQLGNEAIDDADLEDELEA------MEQEQLDEKILKTGTGPV 186
Query: 144 LDAELNLPTAPSGH-----ASAQHDRPQASIR 170
DA LP A +G + + D +A +R
Sbjct: 187 SDAIQRLPAAANGELKGKATTVEEDDEEAELR 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,762,461
Number of Sequences: 539616
Number of extensions: 2603683
Number of successful extensions: 7821
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 7697
Number of HSP's gapped (non-prelim): 218
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)