Query 030827
Match_columns 171
No_of_seqs 134 out of 758
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:10:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00464 SNF-7-like protein; P 100.0 3.1E-34 6.8E-39 235.0 19.6 152 5-163 54-206 (211)
2 KOG1656 Protein involved in gl 100.0 9.9E-33 2.2E-37 222.3 16.8 142 9-161 58-199 (221)
3 KOG2910 Uncharacterized conser 100.0 1.6E-30 3.4E-35 207.8 17.6 150 5-162 49-199 (209)
4 PTZ00446 vacuolar sorting prot 100.0 2.3E-30 5E-35 209.0 16.8 118 6-125 61-178 (191)
5 KOG1655 Protein involved in va 100.0 2.5E-29 5.4E-34 201.7 19.3 162 1-163 52-217 (218)
6 PF03357 Snf7: Snf7; InterPro 99.9 8E-25 1.7E-29 170.6 7.2 124 5-128 34-157 (171)
7 KOG2911 Uncharacterized conser 99.9 4.3E-23 9.3E-28 181.8 16.3 124 4-127 265-389 (439)
8 KOG3230 Vacuolar assembly/sort 98.8 1.2E-07 2.5E-12 77.0 12.7 120 6-127 50-169 (224)
9 KOG3229 Vacuolar sorting prote 98.4 2E-05 4.4E-10 64.5 14.2 131 5-135 51-183 (227)
10 KOG3231 Predicted assembly/vac 98.0 0.00029 6.3E-09 56.3 13.6 129 6-134 49-182 (208)
11 KOG3232 Vacuolar assembly/sort 97.5 0.02 4.2E-07 46.2 17.2 117 5-127 42-166 (203)
12 PF04012 PspA_IM30: PspA/IM30 96.7 0.073 1.6E-06 43.4 13.4 113 5-122 77-203 (221)
13 PRK10698 phage shock protein P 96.6 0.11 2.4E-06 43.0 13.9 121 5-125 78-218 (222)
14 PF03357 Snf7: Snf7; InterPro 96.3 0.0026 5.6E-08 49.2 2.4 132 10-157 27-170 (171)
15 KOG1656 Protein involved in gl 96.1 0.089 1.9E-06 43.4 10.4 103 17-126 73-180 (221)
16 PTZ00464 SNF-7-like protein; P 96.0 0.31 6.8E-06 40.2 13.4 130 24-164 66-199 (211)
17 TIGR02977 phageshock_pspA phag 95.9 0.74 1.6E-05 37.8 15.6 94 5-98 78-185 (219)
18 KOG1655 Protein involved in va 94.1 0.87 1.9E-05 37.5 10.3 110 14-124 57-171 (218)
19 COG5491 VPS24 Conserved protei 93.6 3 6.6E-05 34.4 12.8 106 22-127 38-151 (204)
20 COG1842 PspA Phage shock prote 92.7 5.1 0.00011 33.4 13.8 114 5-122 78-205 (225)
21 KOG2910 Uncharacterized conser 92.5 4.7 0.0001 33.1 12.2 37 33-69 70-106 (209)
22 KOG3230 Vacuolar assembly/sort 88.8 12 0.00027 30.9 12.5 117 10-134 58-183 (224)
23 PF05852 DUF848: Gammaherpesvi 86.7 13 0.00028 29.2 10.0 28 72-99 86-113 (146)
24 PTZ00446 vacuolar sorting prot 85.3 17 0.00036 29.7 10.5 76 27-103 75-154 (191)
25 COG5491 VPS24 Conserved protei 82.0 27 0.0006 28.8 13.5 75 23-97 46-124 (204)
26 PF08651 DASH_Duo1: DASH compl 81.4 10 0.00022 26.5 6.8 65 23-102 2-66 (78)
27 cd00632 Prefoldin_beta Prefold 71.9 34 0.00074 24.6 9.9 95 20-125 7-101 (105)
28 PF03908 Sec20: Sec20; InterP 68.9 38 0.00081 23.8 8.1 62 15-76 8-70 (92)
29 KOG3584 cAMP response element 68.0 14 0.00031 32.2 5.6 30 8-37 297-326 (348)
30 TIGR02338 gimC_beta prefoldin, 63.8 54 0.0012 23.8 9.4 98 17-125 8-105 (110)
31 PF00804 Syntaxin: Syntaxin; 61.4 23 0.00051 24.2 4.9 49 75-125 7-55 (103)
32 PRK05560 DNA gyrase subunit A; 55.6 2.2E+02 0.0047 28.1 12.6 89 33-126 380-476 (805)
33 PF09340 NuA4: Histone acetylt 55.3 27 0.00058 24.4 4.3 31 14-44 4-34 (80)
34 COG3078 Uncharacterized protei 52.7 35 0.00075 27.1 4.9 16 106-121 149-164 (169)
35 TIGR03687 pupylate_cterm ubiqu 51.6 22 0.00047 21.0 2.7 18 75-92 3-20 (33)
36 TIGR01061 parC_Gpos DNA topois 51.0 2.5E+02 0.0054 27.5 12.4 88 34-126 378-473 (738)
37 PF02583 Trns_repr_metal: Meta 50.2 57 0.0012 22.8 5.3 49 21-72 4-52 (85)
38 PRK10869 recombination and rep 47.9 2.4E+02 0.0052 26.4 10.9 44 55-100 243-286 (553)
39 smart00685 DM14 Repeats in fly 47.6 32 0.00069 22.9 3.4 27 5-31 18-44 (59)
40 KOG0972 Huntingtin interacting 46.6 2.1E+02 0.0045 25.4 11.0 28 74-101 307-334 (384)
41 PRK15039 transcriptional repre 45.2 1.1E+02 0.0024 21.9 6.2 49 21-72 8-56 (90)
42 TIGR01063 gyrA DNA gyrase, A s 44.3 3.3E+02 0.0071 26.9 12.4 86 35-125 379-472 (800)
43 PRK14127 cell division protein 43.6 54 0.0012 24.4 4.5 57 61-125 12-68 (109)
44 COG2719 SpoVR Uncharacterized 43.5 1.2E+02 0.0026 28.1 7.5 68 52-123 133-200 (495)
45 PRK04778 septation ring format 42.9 1.5E+02 0.0033 27.7 8.4 107 10-125 149-266 (569)
46 KOG0994 Extracellular matrix g 41.9 1.8E+02 0.004 30.5 9.0 32 72-103 1508-1539(1758)
47 cd04779 HTH_MerR-like_sg4 Heli 40.1 1.6E+02 0.0036 22.3 7.7 53 16-68 78-130 (134)
48 cd00187 TOP4c DNA Topoisomeras 40.1 2.3E+02 0.0051 25.9 9.0 88 16-124 331-421 (445)
49 PRK10807 paraquat-inducible pr 39.1 3E+02 0.0064 25.9 9.7 57 39-100 435-491 (547)
50 PRK13848 conjugal transfer pro 38.3 1.4E+02 0.0031 21.8 5.8 53 75-128 10-64 (98)
51 COG1256 FlgK Flagellar hook-as 38.0 1.8E+02 0.0039 27.5 8.1 69 53-124 142-210 (552)
52 TIGR00634 recN DNA repair prot 37.7 3.4E+02 0.0074 25.2 11.4 43 54-100 249-291 (563)
53 PF10475 DUF2450: Protein of u 37.2 2.6E+02 0.0056 23.7 12.2 88 14-101 52-141 (291)
54 PRK09631 DNA topoisomerase IV 37.1 2.7E+02 0.0059 26.9 9.2 95 24-126 328-447 (635)
55 PF09728 Taxilin: Myosin-like 36.3 2.9E+02 0.0062 24.0 12.0 100 12-122 50-149 (309)
56 COG1937 Uncharacterized protei 36.1 1.6E+02 0.0035 21.1 8.0 59 20-81 7-65 (89)
57 PF08651 DASH_Duo1: DASH compl 36.1 1.5E+02 0.0032 20.6 8.2 27 24-50 17-43 (78)
58 PRK03947 prefoldin subunit alp 35.8 1.8E+02 0.004 21.6 11.0 40 14-53 8-47 (140)
59 PF07820 TraC: TraC-like prote 34.4 1.8E+02 0.0039 21.1 9.1 53 76-129 10-64 (92)
60 KOG3232 Vacuolar assembly/sort 33.9 2.6E+02 0.0057 22.8 8.8 95 10-119 61-161 (203)
61 PRK00977 exodeoxyribonuclease 33.8 77 0.0017 22.1 3.8 42 31-72 12-54 (80)
62 COG0172 SerS Seryl-tRNA synthe 33.8 3.8E+02 0.0082 24.6 12.7 105 10-135 10-116 (429)
63 PF13094 CENP-Q: CENP-Q, a CEN 33.6 2.2E+02 0.0047 21.8 8.2 55 15-69 23-78 (160)
64 COG0576 GrpE Molecular chapero 33.3 1.1E+02 0.0023 24.9 5.1 9 92-100 125-133 (193)
65 PF04912 Dynamitin: Dynamitin 33.0 2.6E+02 0.0057 24.7 8.0 45 74-122 338-382 (388)
66 PRK14069 exodeoxyribonuclease 32.8 80 0.0017 23.0 3.9 42 31-72 10-52 (95)
67 KOG1924 RhoA GTPase effector D 32.8 5.4E+02 0.012 26.1 12.6 15 109-123 489-503 (1102)
68 PF02609 Exonuc_VII_S: Exonucl 32.4 1.3E+02 0.0029 18.9 5.1 40 33-72 3-43 (53)
69 PF04100 Vps53_N: Vps53-like, 32.4 3.6E+02 0.0079 24.0 10.2 42 49-90 131-172 (383)
70 PRK14070 exodeoxyribonuclease 32.1 53 0.0011 22.4 2.7 37 36-72 2-39 (69)
71 PRK14063 exodeoxyribonuclease 32.0 91 0.002 21.5 3.9 42 31-72 7-49 (76)
72 PRK10547 chemotaxis protein Ch 31.6 2.2E+02 0.0048 27.5 7.7 63 22-84 5-67 (670)
73 PRK14163 heat shock protein Gr 31.6 1.3E+02 0.0028 25.0 5.4 13 54-66 112-124 (214)
74 PRK14068 exodeoxyribonuclease 31.1 82 0.0018 21.8 3.6 43 30-72 7-50 (76)
75 KOG4715 SWI/SNF-related matrix 30.8 3.4E+02 0.0074 24.3 8.1 70 20-89 222-296 (410)
76 TIGR02492 flgK_ends flagellar 30.6 2.5E+02 0.0055 24.1 7.4 71 53-126 138-209 (322)
77 KOG0995 Centromere-associated 30.2 5E+02 0.011 24.9 12.2 87 14-100 260-357 (581)
78 TIGR00444 mazG MazG family pro 30.2 2.6E+02 0.0055 23.6 7.1 58 56-121 131-189 (248)
79 PHA03161 hypothetical protein; 29.5 2.8E+02 0.0062 21.8 11.9 16 74-89 88-103 (150)
80 PF02403 Seryl_tRNA_N: Seryl-t 29.1 2.1E+02 0.0046 20.2 10.2 46 10-55 10-55 (108)
81 PRK09562 mazG nucleoside triph 29.1 2.6E+02 0.0057 23.7 7.0 56 56-121 142-198 (262)
82 PF08006 DUF1700: Protein of u 28.7 1.8E+02 0.0038 22.7 5.6 29 64-92 9-37 (181)
83 PRK14162 heat shock protein Gr 28.6 1.1E+02 0.0023 25.0 4.4 7 93-99 128-134 (194)
84 PRK14159 heat shock protein Gr 28.2 2.3E+02 0.0049 22.7 6.1 10 57-66 105-114 (176)
85 PF07996 T4SS: Type IV secreti 28.1 1.3E+02 0.0027 23.6 4.7 53 4-56 104-156 (195)
86 PF04012 PspA_IM30: PspA/IM30 27.7 3.2E+02 0.0069 21.8 9.5 80 17-96 103-189 (221)
87 PRK10807 paraquat-inducible pr 27.5 5.2E+02 0.011 24.3 10.7 23 25-47 435-457 (547)
88 COG5665 NOT5 CCR4-NOT transcri 26.8 2.7E+02 0.0058 25.6 6.8 23 63-85 152-175 (548)
89 PF10112 Halogen_Hydrol: 5-bro 26.7 3.2E+02 0.007 21.6 7.8 60 21-80 70-130 (199)
90 PF05597 Phasin: Poly(hydroxya 26.5 1.9E+02 0.0041 22.1 5.2 32 93-125 95-126 (132)
91 PRK08097 ligB NAD-dependent DN 26.4 3.3E+02 0.0071 25.9 7.7 53 70-124 23-75 (562)
92 KOG2459 GPI transamidase compl 26.3 3.3E+02 0.0072 25.7 7.6 56 16-72 409-464 (536)
93 cd00890 Prefoldin Prefoldin is 26.2 2.5E+02 0.0054 20.1 6.4 40 17-56 4-43 (129)
94 PF03127 GAT: GAT domain; Int 26.2 2.2E+02 0.0048 20.1 5.3 73 37-123 5-79 (100)
95 PRK06647 DNA polymerase III su 26.1 5.6E+02 0.012 24.1 13.3 66 63-128 310-382 (563)
96 PF05103 DivIVA: DivIVA protei 26.0 90 0.002 22.7 3.3 39 61-99 7-45 (131)
97 PRK14146 heat shock protein Gr 26.0 1.2E+02 0.0025 25.2 4.2 7 93-99 143-149 (215)
98 KOG2148 Exocyst protein Sec3 [ 25.4 6.7E+02 0.015 24.8 9.9 95 30-125 190-287 (867)
99 PHA03185 UL14 tegument protein 25.4 4E+02 0.0086 22.1 14.9 29 108-136 136-168 (214)
100 PF01920 Prefoldin_2: Prefoldi 25.3 1.1E+02 0.0025 21.1 3.6 43 74-124 57-99 (106)
101 PHA02698 hypothetical protein; 25.2 2.2E+02 0.0047 20.1 4.8 44 72-123 41-84 (89)
102 PF07870 DUF1657: Protein of u 24.9 1.8E+02 0.0039 18.4 4.1 45 38-84 2-46 (50)
103 PF06160 EzrA: Septation ring 24.7 5.8E+02 0.013 23.9 13.1 113 7-124 142-261 (560)
104 PRK11352 regulator protein Frm 24.7 2.6E+02 0.0057 19.9 7.1 48 22-72 9-56 (91)
105 PF06103 DUF948: Bacterial pro 24.1 2.4E+02 0.0053 19.3 10.0 12 56-67 51-62 (90)
106 TIGR01280 xseB exodeoxyribonuc 23.9 1.8E+02 0.0039 19.4 4.2 41 32-72 4-45 (67)
107 PRK14149 heat shock protein Gr 23.5 1.3E+02 0.0028 24.5 4.0 8 92-99 124-131 (191)
108 KOG4648 Uncharacterized conser 23.4 2.9E+02 0.0062 25.4 6.4 62 11-72 135-208 (536)
109 PRK14064 exodeoxyribonuclease 22.8 2.3E+02 0.0051 19.4 4.6 42 31-72 8-50 (75)
110 PF10475 DUF2450: Protein of u 22.7 4.7E+02 0.01 22.1 10.4 74 17-90 106-179 (291)
111 PF04065 Not3: Not1 N-terminal 22.5 2.7E+02 0.0059 23.4 5.8 27 64-90 185-212 (233)
112 PRK09343 prefoldin subunit bet 22.1 3.3E+02 0.0072 20.1 9.7 97 17-124 12-108 (121)
113 PRK14066 exodeoxyribonuclease 22.0 2.2E+02 0.0048 19.6 4.4 42 31-72 6-48 (75)
114 PF05852 DUF848: Gammaherpesvi 21.8 4E+02 0.0086 20.9 7.4 13 111-123 103-115 (146)
115 PLN02678 seryl-tRNA synthetase 21.7 6.3E+02 0.014 23.2 12.8 45 9-53 13-57 (448)
116 TIGR02894 DNA_bind_RsfA transc 21.7 4.2E+02 0.0091 21.1 9.0 34 36-69 80-113 (161)
117 TIGR01063 gyrA DNA gyrase, A s 21.5 3.8E+02 0.0082 26.5 7.4 44 28-71 362-405 (800)
118 PF10506 MCC-bdg_PDZ: PDZ doma 20.9 2.2E+02 0.0048 19.3 4.1 31 8-38 35-65 (67)
119 PRK14067 exodeoxyribonuclease 20.9 2.3E+02 0.0049 19.8 4.3 42 31-72 9-51 (80)
No 1
>PTZ00464 SNF-7-like protein; Provisional
Probab=100.00 E-value=3.1e-34 Score=234.98 Aligned_cols=152 Identities=45% Similarity=0.741 Sum_probs=132.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (171)
Q Consensus 5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei 84 (171)
+.+++.|++|+.|||+||+||++++++.++++||++++++|+++++|.+||+||+.|+++||.+|++|++|+|+++||+|
T Consensus 54 ~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei 133 (211)
T PTZ00464 54 MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDEL 133 (211)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 66677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCC-CCCCcccccCCCCCCCCCCCCCCC
Q 030827 85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPD-KEPDLDAELNLPTAPSGHASAQHD 163 (171)
Q Consensus 85 ~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~~~-~~~~~~~~~~lp~~p~~~~~~~~~ 163 (171)
+|+++.++||+++|++++++++++||+||++||++|+.++..+. +|+|+... ..| .=.||.+|.....-+.|
T Consensus 134 ~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~e~---~~~~l~~~~~~p----~~~~~~~~~~~~~~~~~ 206 (211)
T PTZ00464 134 ADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEKEA---DASYLADALAVP----GTKLPDVPTDEKQQAEG 206 (211)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccc---cchhhhccccCC----CCCCCCCCCcccccccc
Confidence 99999999999999998876668999999999999999876433 57777332 122 12677777766554444
No 2
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-33 Score=222.27 Aligned_cols=142 Identities=30% Similarity=0.410 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 030827 9 AIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLM 88 (171)
Q Consensus 9 g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~ 88 (171)
++|+.|+.||||||+||++|.++.+.+.+|+.++..||+|..|.+|+++|..|+++||.+|+.||||+|+++||+|.|+.
T Consensus 58 kNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQq 137 (221)
T KOG1656|consen 58 KNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQ 137 (221)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 030827 89 DVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQ 161 (171)
Q Consensus 89 e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~~~~~~~~~~~~~lp~~p~~~~~~~ 161 (171)
+.++||+++||.+++++.++|||||.+||++|+.+......-.++. | + +.||+||+..++..
T Consensus 138 e~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~-------p--~--v~LP~vPs~~lPa~ 199 (221)
T KOG1656|consen 138 EVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRA-------P--P--VPLPDVPSIALPAK 199 (221)
T ss_pred HHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCC-------C--C--CCCCCCCccccCcc
Confidence 9999999999999998778999999999999998766544322221 1 1 26777777666544
No 3
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=207.79 Aligned_cols=150 Identities=30% Similarity=0.438 Sum_probs=137.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (171)
Q Consensus 5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei 84 (171)
-+|.|.|.+|+.+||+|+++|..|.++++++.||++++..||++...+.|+++|+.||.+||++++.|++|+|+++|||.
T Consensus 49 lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt 128 (209)
T KOG2910|consen 49 LIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDT 128 (209)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc-cCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 030827 85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME-DEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQH 162 (171)
Q Consensus 85 ~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e-~~~~~p~~~~~~~~~~~~~~~~lp~~p~~~~~~~~ 162 (171)
+|.+++++||+++|++.++. .|+++|++||++|+.+...+ ..|.||+.. |.+|....+|++|+.+.++.+
T Consensus 129 ~ea~~YQ~Ein~~L~~~ls~---~dEddi~~EldaLese~~~e~e~PevPs~e-----p~lPek~~~~~~~~k~~~~~~ 199 (209)
T KOG2910|consen 129 QEAIEYQDEINAILSGSLSA---EDEDDILAELDALESELEVEAELPEVPSTE-----PELPEKEDLEDVPEKEPAASE 199 (209)
T ss_pred HHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHHHHHHhhhhhhcCCCCCCC-----CCcccccccccccccccchhh
Confidence 99999999999999998874 79999999999999998874 559999754 334457789999998877664
No 4
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=99.97 E-value=2.3e-30 Score=209.00 Aligned_cols=118 Identities=22% Similarity=0.361 Sum_probs=111.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 030827 6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM 85 (171)
Q Consensus 6 ~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~ 85 (171)
.++|+|++|+.||||||+||++|+++.++++||++++++||+|++|.+||.||+.|+++||.+|+.|++|+||++||+|+
T Consensus 61 ~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~ 140 (191)
T PTZ00446 61 VEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQ 140 (191)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030827 86 DLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMG 125 (171)
Q Consensus 86 E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~ 125 (171)
|+++.++||+++|++++. +++||+||++||++|+.+-.
T Consensus 141 E~~e~~~EIseaLs~~~~--~~~DEdELe~ELe~Le~e~l 178 (191)
T PTZ00446 141 ENKDIQEEINQALSFNLL--NNVDDDEIDKELDLLKEQTM 178 (191)
T ss_pred HHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHH
Confidence 999999999999998643 46999999999999998643
No 5
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.5e-29 Score=201.67 Aligned_cols=162 Identities=51% Similarity=0.751 Sum_probs=143.6
Q ss_pred CCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 030827 1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNL 80 (171)
Q Consensus 1 ~~~g~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~l 80 (171)
||+|+.++--|++|+++||+||+||.+.+.+.+|.||+++..+++++.+.+..+|.|||.|++.||..++.|+||+|+++
T Consensus 52 ~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~Iedl 131 (218)
T KOG1655|consen 52 TRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDL 131 (218)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc--c-CCCCCCCCCCCCCCCcc-cccCCCCCCCC
Q 030827 81 QDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME--D-EAGVPSYLQPDKEPDLD-AELNLPTAPSG 156 (171)
Q Consensus 81 mdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e--~-~~~~p~~~~~~~~~~~~-~~~~lp~~p~~ 156 (171)
.|+|.|.++..+||+++|+++++.+ ++|+++|++||++|..|..-- . ....|||+.|+..|..+ .+...|..|.+
T Consensus 132 QDem~Dlmd~a~EiQE~Lgr~y~~p-eide~dL~aELdaL~~E~d~~~~~~~~~~psyl~p~~~~~~~~de~~~~~~~~~ 210 (218)
T KOG1655|consen 132 QDEMEDLMDQADEIQEVLGRNYNTP-DIDEADLDAELDALGQELDMLEEDENYLMPSYLAPANEPPAFIDEENAEGAEVD 210 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCC-CcCHHHHHHHHHHHHhHhhcccccccccchhhhCCCCCCCCCcccccCCCcccc
Confidence 9999999999999999999999987 599999999999997664422 2 25689999999876554 35566666666
Q ss_pred CCCCCCC
Q 030827 157 HASAQHD 163 (171)
Q Consensus 157 ~~~~~~~ 163 (171)
+--.|++
T Consensus 211 ~~g~p~~ 217 (218)
T KOG1655|consen 211 EFGLPSG 217 (218)
T ss_pred ccCCCCC
Confidence 5544443
No 6
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.91 E-value=8e-25 Score=170.63 Aligned_cols=124 Identities=34% Similarity=0.479 Sum_probs=99.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (171)
Q Consensus 5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei 84 (171)
+.++|+|..|+.|||++|.++++++++.+++.+|++++.+|+++..+..|+.+|+.|+++|+++++.|++++|+++|++|
T Consensus 34 ~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~ 113 (171)
T PF03357_consen 34 AIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALKKINKQINLDKVEKLMDDF 113 (171)
T ss_dssp HHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHHHHHHSTTSCCHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhcccc
Q 030827 85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMED 128 (171)
Q Consensus 85 ~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~ 128 (171)
++.++.+++|+++|++.++..+++||+||++||++|+.|...+.
T Consensus 114 ~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~ 157 (171)
T PF03357_consen 114 QEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEE 157 (171)
T ss_dssp HHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS
T ss_pred HHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999997743246899999999999999988654
No 7
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=4.3e-23 Score=181.82 Aligned_cols=124 Identities=21% Similarity=0.311 Sum_probs=116.8
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChhHHHHHHH
Q 030827 4 GPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK-TVKIQDIDNLQD 82 (171)
Q Consensus 4 g~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~-~~~id~Ve~lmd 82 (171)
.+.|.|.|+.|+.|||+||++||.++++..++.||++++++|.+|++|+.|+.||++|+.|||.+++ ..+.|+||++||
T Consensus 265 ~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ld 344 (439)
T KOG2911|consen 265 QALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLD 344 (439)
T ss_pred HHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999999998 458999999999
Q ss_pred HHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030827 83 EMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME 127 (171)
Q Consensus 83 ei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e 127 (171)
++.|.++.++||+++|+.+...+.+++|++||+||+.|+.+..+.
T Consensus 345 ev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~~k~ 389 (439)
T KOG2911|consen 345 EVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEADEKKN 389 (439)
T ss_pred HHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccC
Confidence 999999999999999999875557899999999999999988764
No 8
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.2e-07 Score=77.02 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=100.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 030827 6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM 85 (171)
Q Consensus 6 ~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~ 85 (171)
.++|+-..++..-|.--+...++.+..++..+|+.+...|...+++..+..+|+.++++|..+|+.|++-.+.++|.+++
T Consensus 50 AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFe 129 (224)
T KOG3230|consen 50 AKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFE 129 (224)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 45666555555555555666778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030827 86 DLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME 127 (171)
Q Consensus 86 E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e 127 (171)
.+.+.++...++|+...+ +.++++|=|+|-++|.+.+.+|
T Consensus 130 kQse~Mdm~~Emm~daID--dal~~~edEEEtd~lvnqVLDE 169 (224)
T KOG3230|consen 130 KQSEIMDMKEEMMDDAID--DALGDDEDEEETDDLVNQVLDE 169 (224)
T ss_pred HHHHHHHHHHHHHHHHHH--HhhcccchhHHHHHHHHHHHHH
Confidence 999999999999988654 2345555678888888776665
No 9
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=2e-05 Score=64.53 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=114.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (171)
Q Consensus 5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei 84 (171)
++++|++..++.+-|.--...+...+++.....|-.+.+.+..+-....+...|..+..+||.+++-+.+=.+-.+|-++
T Consensus 51 aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrel 130 (227)
T KOG3229|consen 51 AAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMREL 130 (227)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 57888999999888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhccCCC-CC-CCCCHHHHHHHHHHHHHhhccccCCCCCCC
Q 030827 85 MDLMDVSHEIQETLGRSYN-VP-DDIDEDELMGELDALEADMGMEDEAGVPSY 135 (171)
Q Consensus 85 ~E~~e~~~EI~eaLs~~~~-~~-~~~DedELe~EL~~Le~E~~~e~~~~~p~~ 135 (171)
.-.+.+.--|.+++...+. +. .+..+++.+.|.+.+..++..+..+++|..
T Consensus 131 SkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~~p~a 183 (227)
T KOG3229|consen 131 SKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGEAPLA 183 (227)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccccccCCcc
Confidence 9999999999998886542 11 223567788888888889888887777753
No 10
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00029 Score=56.29 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=101.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 030827 6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM 85 (171)
Q Consensus 6 ~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~ 85 (171)
...|++..|+.+-|+--.+.+|-.++++....+..+-.+-....++..+-.||-...+.|+.+|+.|+++++-..|-+++
T Consensus 49 Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ 128 (208)
T KOG3231|consen 49 AAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQ 128 (208)
T ss_pred HHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhccCCCC--CCCCCHHHHHHHHHHHHHhhcccc---CCCCCC
Q 030827 86 DLMDVSHEIQETLGRSYNV--PDDIDEDELMGELDALEADMGMED---EAGVPS 134 (171)
Q Consensus 86 E~~e~~~EI~eaLs~~~~~--~~~~DedELe~EL~~Le~E~~~e~---~~~~p~ 134 (171)
-...+++--.+++...++. ...-|++|-.+=.++...|+.-|. ..++|+
T Consensus 129 ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKma~~P~ 182 (208)
T KOG3231|consen 129 KANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKMAKAPS 182 (208)
T ss_pred HHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchhccCCc
Confidence 8887776555555543210 012355555555555555555443 267775
No 11
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.02 Score=46.20 Aligned_cols=117 Identities=14% Similarity=0.197 Sum_probs=83.3
Q ss_pred hhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 030827 5 PAQEAIKARAMR----VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNL 80 (171)
Q Consensus 5 ~~~~g~K~~Al~----~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~l 80 (171)
++++|+.+.|.. +.|+|. +--++......+..+...+++|.+...|-..|....+.|....+.||+++|-.+
T Consensus 42 Ai~kgN~dvArIyAeNAIRkkn----e~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~ 117 (203)
T KOG3232|consen 42 AIQKGNMDVARIYAENAIRKKN----EAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQL 117 (203)
T ss_pred HHHhcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 566677666654 344443 333455667788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHh----ccCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030827 81 QDEMMDLMDVSHEIQETL----GRSYNVPDDIDEDELMGELDALEADMGME 127 (171)
Q Consensus 81 mdei~E~~e~~~EI~eaL----s~~~~~~~~~DedELe~EL~~Le~E~~~e 127 (171)
||.+.-+-++.+--...+ +++... ..+.++++.=+.+...|...|
T Consensus 118 MDkFE~qFedldvqt~~me~~m~~st~l--~tpq~~Vd~Lmq~vADeaGlE 166 (203)
T KOG3232|consen 118 MDKFEKQFEDLDVQTEVMEKAMSGSTAL--STPQGDVDSLMQQVADEAGLE 166 (203)
T ss_pred HHHHHHHhhhhhhHHHHHHHhccCcccc--cCChhHHHHHHHHHHHHhchh
Confidence 999999888877655555 443322 245555444444444444433
No 12
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=96.72 E-value=0.073 Score=43.35 Aligned_cols=113 Identities=18% Similarity=0.194 Sum_probs=82.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---
Q 030827 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLD-----------QVAFASEGIKDAQQTMTALKSANKELKGMMK--- 70 (171)
Q Consensus 5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe-----------~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~--- 70 (171)
++++|+-..|+.+|.+|+.++.++..+..++..+. .+-.+|...+.....+.+-....++.++++.
T Consensus 77 Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~ 156 (221)
T PF04012_consen 77 ALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALA 156 (221)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999999998888777765444 4555667778888888888888888888875
Q ss_pred cCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHH
Q 030827 71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEA 122 (171)
Q Consensus 71 ~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~ 122 (171)
.++++.....++.|.+.++..+--.++...... +...++.+|+++..
T Consensus 157 ~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~-----~~~~~e~~l~~~~~ 203 (221)
T PF04012_consen 157 SFSVSSAMDSFERMEEKIEEMEARAEASAELAD-----SDQDLEAELEELER 203 (221)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc-----CcccHHHHHHHhcC
Confidence 456677777777777777776666666654321 12237777777654
No 13
>PRK10698 phage shock protein PspA; Provisional
Probab=96.60 E-value=0.11 Score=42.97 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=80.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-
Q 030827 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNL-----------DQVAFASEGIKDAQQTMTALKSANKELKGMMKTV- 72 (171)
Q Consensus 5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nL-----------e~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~- 72 (171)
++.+|+-.-|+.+|.+|+.++..+..+..++... ..+..+|+.++.-..++.+=..+..+.++++..+
T Consensus 78 Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~ 157 (222)
T PRK10698 78 ALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD 157 (222)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999998877776665544 4455668888999999999999999999988654
Q ss_pred --ChhHHHHHHHHHHHHHHhHHHHHHHhccCC--CCCCCC----CHHHHHHHHHHHHHhhc
Q 030827 73 --KIQDIDNLQDEMMDLMDVSHEIQETLGRSY--NVPDDI----DEDELMGELDALEADMG 125 (171)
Q Consensus 73 --~id~Ve~lmdei~E~~e~~~EI~eaLs~~~--~~~~~~----DedELe~EL~~Le~E~~ 125 (171)
+.+.--.-++.|.+-++..+--.+++.-.. ++.+.+ .++++++||+.|-..+.
T Consensus 158 ~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve~ELa~LK~~~~ 218 (222)
T PRK10698 158 SGKLDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEISEQLAALKAKMK 218 (222)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 443333444445555555554444542210 110000 12357788888877654
No 14
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=96.32 E-value=0.0026 Score=49.17 Aligned_cols=132 Identities=22% Similarity=0.233 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH--
Q 030827 10 IKARAMRVLKQK-----RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQD-- 82 (171)
Q Consensus 10 ~K~~Al~~LkrK-----K~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmd-- 82 (171)
.+..|+.++|+. +.|=+.+-.+..++.++..+..+++......+.......-..+|+...+.|. ++..-++
T Consensus 27 ~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk--~~~~~i~~~ 104 (171)
T PF03357_consen 27 LEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALK--KINKQINLD 104 (171)
T ss_dssp CHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHH--HHHHSTTSC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhh
Confidence 355666666643 3455667777888888888888888888888888888888888887766552 3332222
Q ss_pred HHHHHHHhHHHHHH---HhccCCCCCCCCC--HHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 030827 83 EMMDLMDVSHEIQE---TLGRSYNVPDDID--EDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGH 157 (171)
Q Consensus 83 ei~E~~e~~~EI~e---aLs~~~~~~~~~D--edELe~EL~~Le~E~~~e~~~~~p~~~~~~~~~~~~~~~~lp~~p~~~ 157 (171)
++.+.++...+..+ .++..++. .++ ++.-++||++..+++..+...... + ...||++|+++
T Consensus 105 ~v~~~~d~~~e~~e~~~ei~~~l~~--~~~~~~~~dd~ele~eL~~l~~e~~~~~~--------~----~~~lp~~P~~~ 170 (171)
T PF03357_consen 105 KVEKLMDDFQEEMEDQDEISEALSD--SMDQVDDVDDEELEEELEQLEDEIEEEEE--------E----KQQLPSVPSTE 170 (171)
T ss_dssp CHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS--------------SS-SS---HH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc--cccCCCCCCHHHHHHHHHHHHHHHhhhhh--------c----cccCCcCCCCC
Confidence 33344433333333 33343432 232 566778888887777766543222 1 33789999875
No 15
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.089 Score=43.36 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccC-ChhHHHHHHHHHHHHHHhHHH
Q 030827 17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKG--MMKTV-KIQDIDNLQDEMMDLMDVSHE 93 (171)
Q Consensus 17 ~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~--~~~~~-~id~Ve~lmdei~E~~e~~~E 93 (171)
|=+.--.+...++++.-|+..|+..-.+.|....-..--+|||.....|-- +..-| +|.+-.+++.+ .++-
T Consensus 73 ~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~e------IseA 146 (221)
T KOG1656|consen 73 YEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEE------ISEA 146 (221)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH------HHHH
Confidence 334445566777888888888888888888777777777788877666532 32333 23333334443 4456
Q ss_pred HHHHhccCCCCCCCCCHHHHHHHHH--HHHHhhcc
Q 030827 94 IQETLGRSYNVPDDIDEDELMGELD--ALEADMGM 126 (171)
Q Consensus 94 I~eaLs~~~~~~~~~DedELe~EL~--~Le~E~~~ 126 (171)
|+.=++-+..+ |+.+-..=.+||+ +|..++..
T Consensus 147 iS~Pvg~~a~~-DEDEL~~ELdeLeqeeld~~ll~ 180 (221)
T KOG1656|consen 147 ISAPVGFGADF-DEDELMAELDELEQEELDKELLD 180 (221)
T ss_pred HhCcccccccc-CHHHHHHHHHHHHHHHHHHHHhc
Confidence 67766643333 2333222245555 45555554
No 16
>PTZ00464 SNF-7-like protein; Provisional
Probab=96.03 E-value=0.31 Score=40.23 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hh---HHHHHHHHHHHHHHhHHHHHHHhc
Q 030827 24 YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK-IQ---DIDNLQDEMMDLMDVSHEIQETLG 99 (171)
Q Consensus 24 ~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~-id---~Ve~lmdei~E~~e~~~EI~eaLs 99 (171)
+-+..-.+..++.++...+++++...+..+....=.....+|+.-++.|. +. +|++ ++++.+.+.++-+.++=|+
T Consensus 66 ~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~-Vd~l~Dei~E~~e~~~EI~ 144 (211)
T PTZ00464 66 LLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDK-VEDLQDELADLYEDTQEIQ 144 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 33445556777888888888888888888877777777777877766552 11 1333 2445555555555566666
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCC
Q 030827 100 RSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDR 164 (171)
Q Consensus 100 ~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~~~~~~~~~~~~~lp~~p~~~~~~~~~~ 164 (171)
..++.+-.+.++.=+.||++=..++..+.. -...|+- --..|.||++.++..++.
T Consensus 145 e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~----~e~~~~~------l~~~~~~p~~~~~~~~~~ 199 (211)
T PTZ00464 145 EIMGRAYDVPDDIDEDEMLGELDALDFDME----KEADASY------LADALAVPGTKLPDVPTD 199 (211)
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHHHHh----ccccchh------hhccccCCCCCCCCCCCc
Confidence 666543222233224444444444443321 1112222 225788888887766654
No 17
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.95 E-value=0.74 Score=37.77 Aligned_cols=94 Identities=9% Similarity=0.038 Sum_probs=60.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 030827 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQ-----------VAFASEGIKDAQQTMTALKSANKELKGMMKT-- 71 (171)
Q Consensus 5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~-----------~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~-- 71 (171)
++++|+-..|+.+|.+|+.++.++..+..++..+.. +-..|+.++.....+.+=.....+.+.++..
T Consensus 78 Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~ 157 (219)
T TIGR02977 78 ALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLD 157 (219)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999998777766665544 4444555666666665555566666666543
Q ss_pred -CChhHHHHHHHHHHHHHHhHHHHHHHh
Q 030827 72 -VKIQDIDNLQDEMMDLMDVSHEIQETL 98 (171)
Q Consensus 72 -~~id~Ve~lmdei~E~~e~~~EI~eaL 98 (171)
++.+.--..++.|.+-++..+--.++.
T Consensus 158 ~~~~~~a~~~fer~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 158 SGRSDEAMARFEQYERRVDELEAQAESY 185 (219)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 455544455555554444444333333
No 18
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.07 E-value=0.87 Score=37.47 Aligned_cols=110 Identities=20% Similarity=0.204 Sum_probs=80.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----ChhHHHHHHHHHHHHH
Q 030827 14 AMRVLKQKRM-YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV----KIQDIDNLQDEMMDLM 88 (171)
Q Consensus 14 Al~~LkrKK~-~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~----~id~Ve~lmdei~E~~ 88 (171)
|+..||+|.+ .-++.-.+.++..+|.++-+..+.|....+-++--.....|||.-++.| .-=+|++| ++++|.|
T Consensus 57 aq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~I-edlQDem 135 (218)
T KOG1655|consen 57 AQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKI-EDLQDEM 135 (218)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH-HHHHHHH
Confidence 5666776654 3466777899999999999999999999999998888899999888765 44456654 6777777
Q ss_pred HhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 030827 89 DVSHEIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (171)
Q Consensus 89 e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~ 124 (171)
++.=+..+=|...++-..+.-|.+..+.+++|....
T Consensus 136 ~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~ 171 (218)
T KOG1655|consen 136 EDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALG 171 (218)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHH
Confidence 777777777777676544555655444444554433
No 19
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=93.64 E-value=3 Score=34.38 Aligned_cols=106 Identities=11% Similarity=0.103 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHhHHH-------
Q 030827 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK-IQDIDNLQDEMMDLMDVSHE------- 93 (171)
Q Consensus 22 K~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~-id~Ve~lmdei~E~~e~~~E------- 93 (171)
+.+-+.+-++..+...|...+..+.+.......--+|.....-+......|+ +..|.++++.+.-+....+-
T Consensus 38 ~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~ 117 (204)
T COG5491 38 RRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLET 117 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666666666666655544444445555555555545554 56666666655444433333
Q ss_pred HHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030827 94 IQETLGRSYNVPDDIDEDELMGELDALEADMGME 127 (171)
Q Consensus 94 I~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e 127 (171)
+.+.+.-..+.+...+.+++++++..+..|...+
T Consensus 118 m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~le 151 (204)
T COG5491 118 MDELMDVVVGDPVLEDLEELDELVNKVLPEIGLE 151 (204)
T ss_pred HHHHhccCccchhhhhHHHHHHHHHhhchhhhhh
Confidence 3333333222111234555555555555555444
No 20
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=92.75 E-value=5.1 Score=33.40 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=77.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 030827 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQV-----------AFASEGIKDAQQTMTALKSANKELKGMMKT-- 71 (171)
Q Consensus 5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~-----------~~~IE~a~~n~~v~~alk~g~~aLK~~~~~-- 71 (171)
++.+|+-.-|..+|-+++.|++++..+..++..+... -.+|......+.++.+=....++-+++++.
T Consensus 78 Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~ 157 (225)
T COG1842 78 ALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLG 157 (225)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888999999999999999888777666554443 345666777888888888888888777753
Q ss_pred -CChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHH
Q 030827 72 -VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEA 122 (171)
Q Consensus 72 -~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~ 122 (171)
++.+.-...++.|.+-++....-.++.+.-. . ...++|+.||+.+..
T Consensus 158 ~~s~~sa~~~fer~e~kiee~ea~a~~~~el~-~---~~~~dl~~e~a~~~~ 205 (225)
T COG1842 158 GGSSSSAMAAFERMEEKIEEREARAEAAAELA-E---GSGDDLDKEFAQAGA 205 (225)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh-c---cCcccHHHHHHHhcc
Confidence 4555566666666666666665555555310 0 233456666666654
No 21
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=92.53 E-value=4.7 Score=33.11 Aligned_cols=37 Identities=14% Similarity=-0.018 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030827 33 NQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMM 69 (171)
Q Consensus 33 ~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~ 69 (171)
.-+.+....+.+||+..++.+.-..-+..-..||.=|
T Consensus 70 ~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN 106 (209)
T KOG2910|consen 70 ELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGN 106 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666555555554444444444433
No 22
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=12 Score=30.90 Aligned_cols=117 Identities=16% Similarity=0.325 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcc-CChhHHHHHHHH
Q 030827 10 IKARAMRVLKQKRMYEGQ---RDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKG--MMKT-VKIQDIDNLQDE 83 (171)
Q Consensus 10 ~K~~Al~~LkrKK~~Ek~---L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~--~~~~-~~id~Ve~lmde 83 (171)
-|-.|+-+.|-|.+..+. ..++.+....++++.++-..++.-+-+-+||..-|+-|.- +.+- +.+++--++||-
T Consensus 58 ~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm 137 (224)
T KOG3230|consen 58 VKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDM 137 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHH
Confidence 467888999988887765 4566777788899999999999999999999998887653 3332 378888888888
Q ss_pred HHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc---cCCCCCC
Q 030827 84 MMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME---DEAGVPS 134 (171)
Q Consensus 84 i~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e---~~~~~p~ 134 (171)
-+|.+. +-|+++|+. +.||+|-++=-++...|+.-. .+.+.|+
T Consensus 138 ~~Emm~--daIDdal~~------~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~ 183 (224)
T KOG3230|consen 138 KEEMMD--DAIDDALGD------DEDEEETDDLVNQVLDEIGVDLASQLSSLPS 183 (224)
T ss_pred HHHHHH--HHHHHhhcc------cchhHHHHHHHHHHHHHHcccHHHHhccCcc
Confidence 777765 457777764 356777776667777666543 2356666
No 23
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=86.66 E-value=13 Score=29.20 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=20.1
Q ss_pred CChhHHHHHHHHHHHHHHhHHHHHHHhc
Q 030827 72 VKIQDIDNLQDEMMDLMDVSHEIQETLG 99 (171)
Q Consensus 72 ~~id~Ve~lmdei~E~~e~~~EI~eaLs 99 (171)
..++.+|++.|.+.|..++.+..-+.+.
T Consensus 86 ~kv~~~E~L~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 86 KKVEDLEKLTDRVEELKEELEFELERLQ 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888777766665555554
No 24
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=85.29 E-value=17 Score=29.70 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-h---hHHHHHHHHHHHHHHhHHHHHHHhccCC
Q 030827 27 QRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK-I---QDIDNLQDEMMDLMDVSHEIQETLGRSY 102 (171)
Q Consensus 27 ~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~-i---d~Ve~lmdei~E~~e~~~EI~eaLs~~~ 102 (171)
.--.+..++.++..++++++......+....=.....+|+.-++.|. + =+||+ +|++.|.++++-+.++=++..+
T Consensus 75 rKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idk-Vd~lmDei~E~~e~~~EIseaL 153 (191)
T PTZ00446 75 RKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQK-VEKIIDTIQENKDIQEEINQAL 153 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666655555555555555554431 1 11222 2444444445555555555554
Q ss_pred C
Q 030827 103 N 103 (171)
Q Consensus 103 ~ 103 (171)
+
T Consensus 154 s 154 (191)
T PTZ00446 154 S 154 (191)
T ss_pred c
Confidence 3
No 25
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=82.02 E-value=27 Score=28.78 Aligned_cols=75 Identities=8% Similarity=-0.037 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-C-ChhHHHHHHHHHHHHHHhHHHHHHH
Q 030827 23 MYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK--T-V-KIQDIDNLQDEMMDLMDVSHEIQET 97 (171)
Q Consensus 23 ~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~--~-~-~id~Ve~lmdei~E~~e~~~EI~ea 97 (171)
.+.++.++++.....|+.+-..+........|...|..++..+..+.. . + -++.+...|+-.+.-++...+..+.
T Consensus 46 ~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v 124 (204)
T COG5491 46 KLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDV 124 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456677788888888888888888888888888877777777774432 1 1 2344444444444333444443333
No 26
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=81.38 E-value=10 Score=26.49 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCC
Q 030827 23 MYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSY 102 (171)
Q Consensus 23 ~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~ 102 (171)
.+++.|+.+...-..++.+...|+.+..+...|.. .++.-..++|..-.-+..++.++++|..+.
T Consensus 2 aL~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~---------------~~~~t~~LLd~w~~IlSQte~~~~Ll~dp~ 66 (78)
T PF08651_consen 2 ALEKELEQLRKINPVIEGLIETLRSAKSNMNRVQE---------------TVESTNTLLDKWIRILSQTEHTQRLLLDPE 66 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 35677777777777777777777777766554431 133555566666666777788888887653
No 27
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=71.93 E-value=34 Score=24.58 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhc
Q 030827 20 QKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLG 99 (171)
Q Consensus 20 rKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs 99 (171)
.-..+.+++..+..++..|+..+.-.+.+... +..+..+..+.+.+-..+=--.++++...+.+.++..+.--..+.
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~E---L~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~ 83 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEE---LEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666665555544444333 333335667777665554334566677777666666555555554
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030827 100 RSYNVPDDIDEDELMGELDALEADMG 125 (171)
Q Consensus 100 ~~~~~~~~~DedELe~EL~~Le~E~~ 125 (171)
. .-++++.++.++..++.
T Consensus 84 ~--------~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 84 R--------QEEDLQEKLKELQEKIQ 101 (105)
T ss_pred H--------HHHHHHHHHHHHHHHHH
Confidence 4 34677888888876653
No 28
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=68.87 E-value=38 Score=23.83 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCChhH
Q 030827 15 MRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMT-ALKSANKELKGMMKTVKIQD 76 (171)
Q Consensus 15 l~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~-alk~g~~aLK~~~~~~~id~ 76 (171)
-.+.|-++++..++++-...+..|.+.-..+........-+. .++.|.+.++++.+.--.|+
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~ 70 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDR 70 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 356778889999999999999999999888888877666555 78889999998876543333
No 29
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=68.03 E-value=14 Score=32.24 Aligned_cols=30 Identities=13% Similarity=-0.018 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 8 EAIKARAMRVLKQKRMYEGQRDMLYNQTFN 37 (171)
Q Consensus 8 ~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~n 37 (171)
-++|..|+.|=|+||.|-|=|+++-..|.|
T Consensus 297 mKNREAARECRRKKKEYVKCLENRVAVLEN 326 (348)
T KOG3584|consen 297 MKNREAARECRRKKKEYVKCLENRVAVLEN 326 (348)
T ss_pred HhhHHHHHHHHHhHhHHHHHHHhHHHHHhc
Confidence 368999999999999999999999888776
No 30
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.81 E-value=54 Score=23.81 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHH
Q 030827 17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQE 96 (171)
Q Consensus 17 ~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~e 96 (171)
.+.+-..+.+++..+..++..|+..+. ........++.+..+..+.+.+-+-+=.-+++++..++.+.++..+.--.
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~---E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~ 84 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLK---EAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544433 33444556666777888888887665445688888888888887766655
Q ss_pred HhccCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030827 97 TLGRSYNVPDDIDEDELMGELDALEADMG 125 (171)
Q Consensus 97 aLs~~~~~~~~~DedELe~EL~~Le~E~~ 125 (171)
.+.. -.+.|...+.+++..+.
T Consensus 85 ~lek--------~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 85 TLQR--------QEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHH
Confidence 5554 23566677777666543
No 31
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=61.37 E-value=23 Score=24.24 Aligned_cols=49 Identities=16% Similarity=0.399 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030827 75 QDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMG 125 (171)
Q Consensus 75 d~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~ 125 (171)
+.|+++-.+|.......++|...-......+ .++.++..|++.|..++.
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~--~~d~~~~~el~~l~~~i~ 55 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSP--DQDSELKRELDELTDEIK 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcchhHHHHHHHHHHHHH
Confidence 4555555555555666666666555443322 233578888888886643
No 32
>PRK05560 DNA gyrase subunit A; Validated
Probab=55.57 E-value=2.2e+02 Score=28.12 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCC
Q 030827 33 NQTFNLDQVAFASEGIKDAQQTMTALKS--------ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNV 104 (171)
Q Consensus 33 ~~l~nLe~~~~~IE~a~~n~~v~~alk~--------g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~ 104 (171)
....++..++.-|..+....++...|.. +...|.--...++-.+++++..++.+.....+++..+|+....
T Consensus 380 ~~~~~~d~vI~iir~s~~~~~~~~~L~~~f~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~- 458 (805)
T PRK05560 380 IALDNIDEVIALIRASPTPAEAKEGLMERFGLSEIQAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPER- 458 (805)
T ss_pred HHHHhhHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-
Confidence 3345666666666666666666665554 2222232234677788999999999999999999999977421
Q ss_pred CCCCCHHHHHHHHHHHHHhhcc
Q 030827 105 PDDIDEDELMGELDALEADMGM 126 (171)
Q Consensus 105 ~~~~DedELe~EL~~Le~E~~~ 126 (171)
=..-+-.||.++......
T Consensus 459 ----l~~~i~~EL~~ikkkfg~ 476 (805)
T PRK05560 459 ----LLEIIKEELLEIKEKFGD 476 (805)
T ss_pred ----HHHHHHHHHHHHHHHhCC
Confidence 124677888888876553
No 33
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=55.31 E-value=27 Score=24.40 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 14 AMRVLKQKRMYEGQRDMLYNQTFNLDQVAFA 44 (171)
Q Consensus 14 Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~ 44 (171)
-..++.+|+.+++.|..+..+...+|+--..
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999888888888887776665
No 34
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.69 E-value=35 Score=27.08 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=11.5
Q ss_pred CCCCHHHHHHHHHHHH
Q 030827 106 DDIDEDELMGELDALE 121 (171)
Q Consensus 106 ~~~DedELe~EL~~Le 121 (171)
++.|||+|+.++.++.
T Consensus 149 ~dddEdDl~~~~~q~D 164 (169)
T COG3078 149 YDDDEDDLERDEKQED 164 (169)
T ss_pred cCCchHHHHHHHHHHH
Confidence 3567888888887654
No 35
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=51.64 E-value=22 Score=20.97 Aligned_cols=18 Identities=22% Similarity=0.529 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHhHH
Q 030827 75 QDIDNLQDEMMDLMDVSH 92 (171)
Q Consensus 75 d~Ve~lmdei~E~~e~~~ 92 (171)
+.+++++|+|.+.++..-
T Consensus 3 ~~~D~lLDeId~vLe~NA 20 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNA 20 (33)
T ss_pred chHHHHHHHHHHHHHHhH
Confidence 578888888888777654
No 36
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=50.96 E-value=2.5e+02 Score=27.48 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCC
Q 030827 34 QTFNLDQVAFASEGIKDAQQTMTALKS--------ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVP 105 (171)
Q Consensus 34 ~l~nLe~~~~~IE~a~~n~~v~~alk~--------g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~ 105 (171)
.+.++..++.-|..+....++...|.. +...|.--...++-.+++++..++.+.....+++..+|+....
T Consensus 378 ~~~~id~~i~iir~~~~~~~~~~~l~~~f~~~~~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~-- 455 (738)
T TIGR01061 378 AISIIDEIIKLIRSSEDKSDAKENLIDNFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEKA-- 455 (738)
T ss_pred HHHhhhhHhHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--
Confidence 344455555555555544445444433 2233332235677788999999999999999999999987432
Q ss_pred CCCCHHHHHHHHHHHHHhhcc
Q 030827 106 DDIDEDELMGELDALEADMGM 126 (171)
Q Consensus 106 ~~~DedELe~EL~~Le~E~~~ 126 (171)
=..-+-+||.++......
T Consensus 456 ---~~~~i~~el~~ik~kfg~ 473 (738)
T TIGR01061 456 ---RNKLLKKQLEEYKKQFAQ 473 (738)
T ss_pred ---HHHHHHHHHHHHHHHhCC
Confidence 235677888888876654
No 37
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=50.15 E-value=57 Score=22.79 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 030827 21 KRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 21 KK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~ 72 (171)
|+.+-+.|.+..+|+.-|+.|+ +.-..-.+|+..+.+...||.++...+
T Consensus 4 k~~ll~RL~rIeGQv~gI~~Mi---ee~~~C~dIl~Qi~Av~~Al~~~~~~v 52 (85)
T PF02583_consen 4 KKDLLNRLKRIEGQVRGIERMI---EEDRDCEDILQQIAAVRSALDKVGKLV 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HTTE-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666677666655554 667788889999999999988775543
No 38
>PRK10869 recombination and repair protein; Provisional
Probab=47.87 E-value=2.4e+02 Score=26.40 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhcc
Q 030827 55 MTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGR 100 (171)
Q Consensus 55 ~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~ 100 (171)
+..+..+...|..+ ..++ +.+..+.+.+.+.....+++..-|..
T Consensus 243 ~~~l~~~~~~l~~~-~~~d-~~~~~~~~~l~~~~~~l~~~~~~l~~ 286 (553)
T PRK10869 243 LSQLYSAKQLLSEL-IGMD-SKLSGVLDMLEEALIQIQEASDELRH 286 (553)
T ss_pred HHHHHHHHHHHHHH-hhhC-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444 2233 34556666666666666666666654
No 39
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=47.60 E-value=32 Score=22.89 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=20.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 030827 5 PAQEAIKARAMRVLKQKRMYEGQRDML 31 (171)
Q Consensus 5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~ 31 (171)
+.++|+-..|+.++|--|.|+..|...
T Consensus 18 AK~~gd~~kAr~~~R~~K~~~~~I~~~ 44 (59)
T smart00685 18 AKRAGDEEKARRHLRIAKQFDDAIKAA 44 (59)
T ss_pred HHHcCCHHHHHHHHHHHhhHHHHHHHH
Confidence 446788888888888888888877654
No 40
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=46.65 E-value=2.1e+02 Score=25.36 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHhccC
Q 030827 74 IQDIDNLQDEMMDLMDVSHEIQETLGRS 101 (171)
Q Consensus 74 id~Ve~lmdei~E~~e~~~EI~eaLs~~ 101 (171)
...++++|+++.-..+.++|-...++.+
T Consensus 307 T~~L~eVm~e~E~~KqemEe~G~~msDG 334 (384)
T KOG0972|consen 307 TETLDEVMDEIEQLKQEMEEQGAKMSDG 334 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 5567778888877777777777777654
No 41
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=45.22 E-value=1.1e+02 Score=21.89 Aligned_cols=49 Identities=12% Similarity=0.301 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 030827 21 KRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 21 KK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~ 72 (171)
|+.+-+.|.+..+|+.-|+.| ||.-..=.+|+..+.+...||..+...+
T Consensus 8 k~~ll~RL~RIeGQv~gI~~M---iee~~~C~dIl~Ql~Avr~Al~~~~~~v 56 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKM---LDEPHECAAVLQQIAAIRGAVNGLMREV 56 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566677766655555 4566677888888888888888775544
No 42
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=44.27 E-value=3.3e+02 Score=26.90 Aligned_cols=86 Identities=16% Similarity=0.265 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-HHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCC
Q 030827 35 TFNLDQVAFASEGIKDAQQTMTALKSA-------NK-ELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPD 106 (171)
Q Consensus 35 l~nLe~~~~~IE~a~~n~~v~~alk~g-------~~-aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~ 106 (171)
..++..++.-|..+....++...|... .. .|.--...++-.+++++..++.+..+..+++..+|+....
T Consensus 379 ~~~~d~vi~~ir~~~~~~~~~~~L~~~~~~~~~qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~~~~--- 455 (800)
T TIGR01063 379 LDNIDEVIALIRASQNTEEAKTRLVERFSLSEIQAQAILDMRLQRLTGLEREKLQEEYKELLELIADLEDILASEER--- 455 (800)
T ss_pred HHhhhHHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---
Confidence 344455555555555555555555432 12 2222224567778999999999999999999999977321
Q ss_pred CCCHHHHHHHHHHHHHhhc
Q 030827 107 DIDEDELMGELDALEADMG 125 (171)
Q Consensus 107 ~~DedELe~EL~~Le~E~~ 125 (171)
=..-|-+||.++.....
T Consensus 456 --l~~vi~~EL~eikkkfg 472 (800)
T TIGR01063 456 --VLEIIREELEEIKEQFG 472 (800)
T ss_pred --HHHHHHHHHHHHHHHhC
Confidence 12457788888887655
No 43
>PRK14127 cell division protein GpsB; Provisional
Probab=43.62 E-value=54 Score=24.39 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=33.6
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030827 61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMG 125 (171)
Q Consensus 61 g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~ 125 (171)
-++.++.-..+.+.+.|+..+|++.+..+....-...|.. .-..|+.+|+++...+.
T Consensus 12 ~~KeF~~~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~--------e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 12 LEKEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQ--------ENARLKAQVDELTKQVS 68 (109)
T ss_pred hhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhc
Confidence 3444555556889999999999997765554332222222 12355555555555443
No 44
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=43.46 E-value=1.2e+02 Score=28.11 Aligned_cols=68 Identities=9% Similarity=0.094 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHh
Q 030827 52 QQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEAD 123 (171)
Q Consensus 52 ~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E 123 (171)
..+++-|.-+..-+...-....++.||+++|.. .+.++-+..-+.++... ...++++..+|..++..-
T Consensus 133 s~iv~~l~~aa~~I~~~e~~~G~~~VE~~LDs~---hai~~~~~~R~~rp~~~-s~~e~~~~~ee~~e~~~s 200 (495)
T COG2719 133 SDIVDYLEFAADYIAECEERHGVEEVERFLDSC---HAIMEYGVDRYKRPKKI-SSEEERARQEEREEYLQS 200 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH---HHHHHhCchhhcCCccc-ccccchhhHHHHHHHhhc
Confidence 466777777877777777778999999999987 55566666777766543 236777777777777654
No 45
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=42.92 E-value=1.5e+02 Score=27.70 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhccCChhHHHHHHHH
Q 030827 10 IKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTM------TALKSANKELKGMMKTVKIQDIDNLQDE 83 (171)
Q Consensus 10 ~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~------~alk~g~~aLK~~~~~~~id~Ve~lmde 83 (171)
.+..-+.+|-.+..|-..+..+..++.+++......+....+-+.+ ..++.....|+.+ +++|=.+..+
T Consensus 149 y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~-----~~~iP~l~~~ 223 (569)
T PRK04778 149 YRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQI-----MEEIPELLKE 223 (569)
T ss_pred HHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3333444444555555556666677777777766666665544433 3333444444433 2333333333
Q ss_pred HHHHH-HhHHHH----HHHhccCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030827 84 MMDLM-DVSHEI----QETLGRSYNVPDDIDEDELMGELDALEADMG 125 (171)
Q Consensus 84 i~E~~-e~~~EI----~eaLs~~~~~~~~~DedELe~EL~~Le~E~~ 125 (171)
++... +..+++ .++...++. ++..+++.++..|...+.
T Consensus 224 ~~~~~P~ql~el~~gy~~m~~~gy~----~~~~~i~~~i~~l~~~i~ 266 (569)
T PRK04778 224 LQTELPDQLQELKAGYRELVEEGYH----LDHLDIEKEIQDLKEQID 266 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHcCCC----CCCCChHHHHHHHHHHHH
Confidence 33322 222333 334445554 466677888888776554
No 46
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.92 E-value=1.8e+02 Score=30.48 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHHHHhHHHHHHHhccCCC
Q 030827 72 VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYN 103 (171)
Q Consensus 72 ~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~ 103 (171)
++.+.|..++++|++..+....|..+|++..+
T Consensus 1508 ~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~ 1539 (1758)
T KOG0994|consen 1508 LTPEQIQQLTGEIQERVASLPNVDAILSRTKG 1539 (1758)
T ss_pred CCHHHHHHHHHHHHHHHHhcccHHHHHHhhhh
Confidence 47889999999999999999999999998653
No 47
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=40.13 E-value=1.6e+02 Score=22.27 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030827 16 RVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGM 68 (171)
Q Consensus 16 ~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~ 68 (171)
.+.++...+.+++..+...+..|..+...++.+.-+....+..-.|..++.++
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 130 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTKELSQQVLTLIQSL 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHhHHHHHHH
Confidence 35566777888888888888889899999988888888888777777766654
No 48
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=40.08 E-value=2.3e+02 Score=25.95 Aligned_cols=88 Identities=16% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---ChhHHHHHHHHHHHHHHhHH
Q 030827 16 RVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV---KIQDIDNLQDEMMDLMDVSH 92 (171)
Q Consensus 16 ~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~---~id~Ve~lmdei~E~~e~~~ 92 (171)
.+-||+.+.-+.++.....+.++...+..|. .|++..+.+..+-+.+.+.+ ++++. ..+
T Consensus 331 ~~~rR~~~~l~k~~~rl~il~g~~~~i~~id------~vi~~ir~s~~ak~~L~~~l~~~~~~~~------------qa~ 392 (445)
T cd00187 331 VYTRRKEYELGKAEARLHILEGLLKAILNID------EVINLIRSSDEAKKALIEELEKLGFSEI------------QAD 392 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHhccHHHHHHHHHHHHhcCCCHH------------HHH
Q ss_pred HHHHHhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 030827 93 EIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (171)
Q Consensus 93 EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~ 124 (171)
.|-++==..+.. .+-+.|.+|+++|..++
T Consensus 393 ~IL~m~L~~LT~---~e~~kL~~E~~~l~~ei 421 (445)
T cd00187 393 AILDMRLRRLTK---LEREKLLKELKELEAEI 421 (445)
T ss_pred HHHHhHHHHhhh---hHHHHHHHHHHHHHHHH
No 49
>PRK10807 paraquat-inducible protein B; Provisional
Probab=39.06 E-value=3e+02 Score=25.88 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhcc
Q 030827 39 DQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGR 100 (171)
Q Consensus 39 e~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~ 100 (171)
+.++..++.+-.+.. .+++..+.++..+++-+..+.+..+..+++. ...+++.+|..
T Consensus 435 e~i~~~l~~tL~~~~--~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~---TL~~l~~~l~~ 491 (547)
T PRK10807 435 NPMIEQATSTLSESQ--RTMRELQTTLDSLNKITSSQSMQQLPADMQK---TLRELNRSMQG 491 (547)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHH---HHHHHHHHHhh
Confidence 444444443333322 4555666666655555555666666666644 44555666654
No 50
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=38.25 E-value=1.4e+02 Score=21.79 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHhHHH-HHH-HhccCCCCCCCCCHHHHHHHHHHHHHhhcccc
Q 030827 75 QDIDNLQDEMMDLMDVSHE-IQE-TLGRSYNVPDDIDEDELMGELDALEADMGMED 128 (171)
Q Consensus 75 d~Ve~lmdei~E~~e~~~E-I~e-aLs~~~~~~~~~DedELe~EL~~Le~E~~~e~ 128 (171)
+.|+.+.+.+........| |.. +|-..+.. -+++|+||..++++|..-+....
T Consensus 10 ~eI~kLqe~lk~~e~keAERigRiAlKAGLge-ieI~d~eL~~aFeeiAaRFR~g~ 64 (98)
T PRK13848 10 EEIAKLQEQLKQAETREAERIGRIALKAGLGE-IEIEEAELQAAFEELAKRFRGGK 64 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-cccCHHHHHHHHHHHHHHHhcCC
Confidence 4566666666655544433 333 33333432 47899999999999998877544
No 51
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=38.03 E-value=1.8e+02 Score=27.47 Aligned_cols=69 Identities=14% Similarity=0.318 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 030827 53 QTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (171)
Q Consensus 53 ~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~ 124 (171)
.++++++.....|+.+.+.++ .+|....+++........+++..+......+ -+=.+|++.=+.|..++
T Consensus 142 ~l~~~in~~~~~L~~l~~~i~-~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~g--~~~NdLlDqRD~Lv~eL 210 (552)
T COG1256 142 TLVNQINNTYEQLTDLRKDIN-AEIAATVDEVNSLLKQIADLNKQIRKVKAAG--NDPNDLLDQRDQLVDEL 210 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHHHH
Confidence 445556666666666665554 4566666666666666666776665543222 22234444444444443
No 52
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=37.66 E-value=3.4e+02 Score=25.24 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhcc
Q 030827 54 TMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGR 100 (171)
Q Consensus 54 v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~ 100 (171)
++..+..+...|..+ ++ +.+..+.+.+.+.....+++..-|..
T Consensus 249 ~~~~l~~~~~~l~~~---~d-~~~~~~~~~l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 249 LLEGLGEAQLALASV---ID-GSLRELAEQVGNALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHHHHHh---hh-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443 21 23444444444444444544444443
No 53
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=37.25 E-value=2.6e+02 Score=23.68 Aligned_cols=88 Identities=9% Similarity=0.128 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHhhccCChhHHHHHHHHHHHHHHhH
Q 030827 14 AMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMT-ALK-SANKELKGMMKTVKIQDIDNLQDEMMDLMDVS 91 (171)
Q Consensus 14 Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~-alk-~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~ 91 (171)
+..++++-..+-+.+.+.......|......+.+.+.+...++ .+. .|-.+++...+.-++.++.+.+..|....+..
T Consensus 52 ~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~ 131 (291)
T PF10475_consen 52 SREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQ 131 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666666666555554 222 35666666666667788888888888888888
Q ss_pred HHHHHHhccC
Q 030827 92 HEIQETLGRS 101 (171)
Q Consensus 92 ~EI~eaLs~~ 101 (171)
..|+.+|+.+
T Consensus 132 ~~l~~ll~~~ 141 (291)
T PF10475_consen 132 SRLQELLEEG 141 (291)
T ss_pred HHHHHHHhcC
Confidence 8888888763
No 54
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=37.08 E-value=2.7e+02 Score=26.87 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-----------------HHhhccCChhHHH
Q 030827 24 YEGQRDMLYNQTF--NLDQVAFA------SEGIKDAQQTMTALKSANKEL-----------------KGMMKTVKIQDID 78 (171)
Q Consensus 24 ~Ek~L~k~~~~l~--nLe~~~~~------IE~a~~n~~v~~alk~g~~aL-----------------K~~~~~~~id~Ve 78 (171)
++-.|.++...++ .|+.+... |+.......|+.+...+.... .--...++--+++
T Consensus 328 ~~~~l~k~~~r~h~~~legl~i~~~i~~~i~~~~~~~~v~~~i~~~~~~~~~~l~~~~t~~qa~ail~mrl~rlt~~e~~ 407 (635)
T PRK09631 328 LELERAKLLEKIFAKTLEQIFIEERIYKRIETISSEEDVISIVLSELKPFKEELSRDVTEEDIENLLKIPIRRISLFDID 407 (635)
T ss_pred HHHHHHHHHHHhhHHHhhhHHhhhhHHHHHHhhcCHHHHHHHHHhccchhhHhhhcCCCHHHHHHHHHhHHHHHhhhhHH
Confidence 3444666666666 56666654 555555566666666443222 1112334444566
Q ss_pred HHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 030827 79 NLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM 126 (171)
Q Consensus 79 ~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~ 126 (171)
++..++.+......++...|+. . -+=+-.||.+|......
T Consensus 408 k~~~e~~~l~~~i~~~~~~L~~-~-------~~~~~~el~~l~~kyg~ 447 (635)
T PRK09631 408 KNQKEIRILNKELKSVEKNLKS-I-------KGYAINFIDKLLAKYSK 447 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHhCC
Confidence 6666777777777777777766 1 13566778887766654
No 55
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=36.30 E-value=2.9e+02 Score=23.98 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhH
Q 030827 12 ARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVS 91 (171)
Q Consensus 12 ~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~ 91 (171)
.++..+.+.+..+...+.++......|+.+-..+. ..|+.+.+-...-...-..-...+ .+++...+.+|+..++..
T Consensus 50 Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQ--k~Nk~lkeE~~~~~~eee~kR~el-~~kFq~~L~dIq~~~ee~ 126 (309)
T PF09728_consen 50 KKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQ--KQNKKLKEESKRRAREEEEKRKEL-SEKFQATLKDIQAQMEEQ 126 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 34445555566666667777777777776655555 445555555555555555555555 467778888887777776
Q ss_pred HHHHHHhccCCCCCCCCCHHHHHHHHHHHHH
Q 030827 92 HEIQETLGRSYNVPDDIDEDELMGELDALEA 122 (171)
Q Consensus 92 ~EI~eaLs~~~~~~~~~DedELe~EL~~Le~ 122 (171)
++-+..+.. ++.+|-.-|..|..
T Consensus 127 ~~~~~k~~~--------eN~~L~eKlK~l~e 149 (309)
T PF09728_consen 127 SERNIKLRE--------ENEELREKLKSLIE 149 (309)
T ss_pred cchhHHHHH--------HHHHHHHHHHHHHH
Confidence 655554322 34455555555543
No 56
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.14 E-value=1.6e+02 Score=21.05 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 030827 20 QKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQ 81 (171)
Q Consensus 20 rKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lm 81 (171)
.||.+-..|.+..+|+. .+..+||+-..=.+|+..+.+...+|+.+...+=-+.+...+
T Consensus 7 ~kkkl~~RlrRi~GQv~---gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~vl~~hl~~cv 65 (89)
T COG1937 7 EKKKLLNRLRRIEGQVR---GIERMLEEDRDCIDVLQQIAAVRGALNGLMREVLEEHLKECV 65 (89)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666544 445556777888899999999999999887665334444444
No 57
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=36.09 E-value=1.5e+02 Score=20.59 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 24 YEGQRDMLYNQTFNLDQVAFASEGIKD 50 (171)
Q Consensus 24 ~Ek~L~k~~~~l~nLe~~~~~IE~a~~ 50 (171)
++..++.+.+...++..+...++++..
T Consensus 17 ie~~~~~L~~a~~~~~~v~~~~~~t~~ 43 (78)
T PF08651_consen 17 IEGLIETLRSAKSNMNRVQETVESTNT 43 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 58
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=35.78 E-value=1.8e+02 Score=21.61 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 14 AMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQ 53 (171)
Q Consensus 14 Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~ 53 (171)
.-.+......|..+++.+..++..|...+..+..+.....
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777777777777776665553333
No 59
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=34.41 E-value=1.8e+02 Score=21.08 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhH-HHHHHH-hccCCCCCCCCCHHHHHHHHHHHHHhhccccC
Q 030827 76 DIDNLQDEMMDLMDVS-HEIQET-LGRSYNVPDDIDEDELMGELDALEADMGMEDE 129 (171)
Q Consensus 76 ~Ve~lmdei~E~~e~~-~EI~ea-Ls~~~~~~~~~DedELe~EL~~Le~E~~~e~~ 129 (171)
+|+.+.+.+....... +-|..+ |-..+. .-+++|+||..+++++...+.....
T Consensus 10 eIekLqe~lk~~e~keaERigr~AlKaGL~-eieI~d~eL~~~FeeIa~RFrk~~~ 64 (92)
T PF07820_consen 10 EIEKLQEQLKQAETKEAERIGRIALKAGLG-EIEISDAELQAAFEEIAARFRKGKK 64 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cccCCHHHHHHHHHHHHHHHhcccc
Confidence 4455555554443332 334432 223332 2468999999999999998886643
No 60
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.87 E-value=2.6e+02 Score=22.81 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccC--ChhHHHHHHHHHHH
Q 030827 10 IKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMM-KTV--KIQDIDNLQDEMMD 86 (171)
Q Consensus 10 ~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~-~~~--~id~Ve~lmdei~E 86 (171)
+|+.|.+|||--- +++..-..|++..-.-.-..+-..|+++|..+-+ .+| .+| -.|++|.-.+++.-
T Consensus 61 kkne~~n~Lrlss-------RvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alk---tmNLekis~~MDkFE~qFedldv 130 (203)
T KOG3232|consen 61 KKNEAVNYLRLSS-------RVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALK---TMNLEKISQLMDKFEKQFEDLDV 130 (203)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhhhhhh
Confidence 4677888887544 4444455555555555555666677777765543 333 122 35677777777665
Q ss_pred HHHhHHHH---HHHhccCCCCCCCCCHHHHHHHHHH
Q 030827 87 LMDVSHEI---QETLGRSYNVPDDIDEDELMGELDA 119 (171)
Q Consensus 87 ~~e~~~EI---~eaLs~~~~~~~~~DedELe~EL~~ 119 (171)
+...++.. +.+++.+-+ +=|.|.++.+.
T Consensus 131 qt~~me~~m~~st~l~tpq~-----~Vd~Lmq~vAD 161 (203)
T KOG3232|consen 131 QTEVMEKAMSGSTALSTPQG-----DVDSLMQQVAD 161 (203)
T ss_pred HHHHHHHhccCcccccCChh-----HHHHHHHHHHH
Confidence 55554433 335554432 33455555543
No 61
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=33.84 E-value=77 Score=22.07 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030827 31 LYNQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 31 ~~~~l~nLe~~~~~IE~a~~n~-~v~~alk~g~~aLK~~~~~~ 72 (171)
+...+..|++++..+++-.... +.+..|+.|...++..++.+
T Consensus 12 fEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L 54 (80)
T PRK00977 12 FEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKL 54 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777665544 46778888888888876554
No 62
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.75 E-value=3.8e+02 Score=24.63 Aligned_cols=105 Identities=20% Similarity=0.188 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ChhHHHHHHHHHHHH
Q 030827 10 IKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV--KIQDIDNLQDEMMDL 87 (171)
Q Consensus 10 ~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~--~id~Ve~lmdei~E~ 87 (171)
+.+.-+..|+.|+.....++++...-.....++..++..+.-...+. |.+-+.+ +.+++..++.++
T Consensus 10 n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~s---------k~ig~~~~~~~~~~~~l~~e~--- 77 (429)
T COG0172 10 NPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELS---------KEIGRALKRGEDDAEELIAEV--- 77 (429)
T ss_pred CHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhhccchhHHHHHHHH---
Confidence 44444455555554444455555555555555555554443332211 1121111 122344444444
Q ss_pred HHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCC
Q 030827 88 MDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSY 135 (171)
Q Consensus 88 ~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~ 135 (171)
+.|.+-|... +...++++.|++.+..-+-+...++||..
T Consensus 78 ----~~l~~~l~~~-----e~~~~~~~~~l~~~ll~ipNi~~~~VPvg 116 (429)
T COG0172 78 ----KELKEKLKEL-----EAALDELEAELDTLLLTIPNIPHESVPVG 116 (429)
T ss_pred ----HHHHHHHHhc-----cHHHHHHHHHHHHHHHhCCCCCccccCcC
Confidence 5555555442 24667888888888877755555555543
No 63
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=33.57 E-value=2.2e+02 Score=21.80 Aligned_cols=55 Identities=20% Similarity=0.137 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 030827 15 MRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGI-KDAQQTMTALKSANKELKGMM 69 (171)
Q Consensus 15 l~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a-~~n~~v~~alk~g~~aLK~~~ 69 (171)
-.++++++.+|.+|.-...++.-|+.-+..++.+ ......+..|+...+++..-.
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~ 78 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERER 78 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999998888888888888877744 555666666666666666544
No 64
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=33.35 E-value=1.1e+02 Score=24.86 Aligned_cols=9 Identities=11% Similarity=0.464 Sum_probs=4.2
Q ss_pred HHHHHHhcc
Q 030827 92 HEIQETLGR 100 (171)
Q Consensus 92 ~EI~eaLs~ 100 (171)
+.+.++|..
T Consensus 125 ~~l~~~L~k 133 (193)
T COG0576 125 DQLLDALEK 133 (193)
T ss_pred HHHHHHHHH
Confidence 444445543
No 65
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=33.04 E-value=2.6e+02 Score=24.72 Aligned_cols=45 Identities=9% Similarity=0.292 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHH
Q 030827 74 IQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEA 122 (171)
Q Consensus 74 id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~ 122 (171)
+..++..+.+|...+...++.-.-+...+. -+..-+..-+..|+.
T Consensus 338 l~~le~~q~~l~~~l~~~~~~L~~ve~~~~----~N~~~i~~n~~~le~ 382 (388)
T PF04912_consen 338 LSELESQQSDLQSQLKKWEELLNKVEEKFK----ENMETIEKNVKKLEE 382 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 555666666666555555544444433321 133344444555544
No 66
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.79 E-value=80 Score=22.97 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030827 31 LYNQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 31 ~~~~l~nLe~~~~~IE~a~~n~-~v~~alk~g~~aLK~~~~~~ 72 (171)
+...+..|++++..||+-.... +.+..|+.|...++..++.+
T Consensus 10 FEeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L 52 (95)
T PRK14069 10 FEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGIL 52 (95)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777665554 46778889998888876654
No 67
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=32.75 E-value=5.4e+02 Score=26.06 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHHh
Q 030827 109 DEDELMGELDALEAD 123 (171)
Q Consensus 109 DedELe~EL~~Le~E 123 (171)
+=.|..+||..++..
T Consensus 489 a~qe~qael~k~e~K 503 (1102)
T KOG1924|consen 489 ARQEAQAELQKHEEK 503 (1102)
T ss_pred HHHHHHHHHHHhhhh
Confidence 456778888888853
No 68
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=32.39 E-value=1.3e+02 Score=18.90 Aligned_cols=40 Identities=8% Similarity=0.058 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030827 33 NQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 33 ~~l~nLe~~~~~IE~a~~n~-~v~~alk~g~~aLK~~~~~~ 72 (171)
..+..|++++.++++-.... +.+.-|+.|...++..++.+
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L 43 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERL 43 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777665554 35667788888887775543
No 69
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=32.39 E-value=3.6e+02 Score=24.00 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 030827 49 KDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDV 90 (171)
Q Consensus 49 ~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~ 90 (171)
+.-.++...|......+....+..++++|-.+...+......
T Consensus 131 r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~ 172 (383)
T PF04100_consen 131 RQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNE 172 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHH
Confidence 445677777777777775555667899998888888765443
No 70
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.15 E-value=53 Score=22.44 Aligned_cols=37 Identities=5% Similarity=0.056 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030827 36 FNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 36 ~nLe~~~~~IE~a~~n~-~v~~alk~g~~aLK~~~~~~ 72 (171)
..|++++..+|+..... +.+..|+.|.+.+|..++.+
T Consensus 2 ~~LEeIV~~LE~gel~Leesl~lyeeG~~L~k~C~~~L 39 (69)
T PRK14070 2 KELEEIVNRLENEDLPLEESIKLFERGVELYRKCKEIL 39 (69)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888776554 46788999999999887765
No 71
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.01 E-value=91 Score=21.53 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030827 31 LYNQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 31 ~~~~l~nLe~~~~~IE~a~~n~-~v~~alk~g~~aLK~~~~~~ 72 (171)
+...+..|++++..+++..... +.+..|+.|...++..++.+
T Consensus 7 fEeal~~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C~~~L 49 (76)
T PRK14063 7 FEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKL 49 (76)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777665554 46778999999998887665
No 72
>PRK10547 chemotaxis protein CheA; Provisional
Probab=31.59 E-value=2.2e+02 Score=27.54 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (171)
Q Consensus 22 K~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei 84 (171)
.+++-.++.....+..|+..+..+|..-.+.+.++.+=-+...||-.-.-|.++.+..+.-.+
T Consensus 5 ~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~ 67 (670)
T PRK10547 5 DFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLM 67 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHH
Confidence 456677888889999999999999988889999999999999999887777777544443333
No 73
>PRK14163 heat shock protein GrpE; Provisional
Probab=31.56 E-value=1.3e+02 Score=24.98 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 030827 54 TMTALKSANKELK 66 (171)
Q Consensus 54 v~~alk~g~~aLK 66 (171)
++..++...+.|.
T Consensus 112 l~~Gv~mi~k~l~ 124 (214)
T PRK14163 112 LVGGFKSVAESLE 124 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 74
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.10 E-value=82 Score=21.83 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030827 30 MLYNQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 30 k~~~~l~nLe~~~~~IE~a~~n~-~v~~alk~g~~aLK~~~~~~ 72 (171)
.+...+..|+.++..+++-.... +.+..|+.|...++..++.+
T Consensus 7 sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~~L 50 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTL 50 (76)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777765554 46788999999988886654
No 75
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=30.82 E-value=3.4e+02 Score=24.25 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhc---cCChhHHHHHHHHHHHHHH
Q 030827 20 QKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQ--TMTALKSANKELKGMMK---TVKIQDIDNLQDEMMDLMD 89 (171)
Q Consensus 20 rKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~--v~~alk~g~~aLK~~~~---~~~id~Ve~lmdei~E~~e 89 (171)
|...+..|...+......|+.-+..||..+.++. +++.-.+-+.-||.+-+ .++.+++...|.+..++..
T Consensus 222 RMqvlkrQv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~c~~kvevd~eK~~~~i~q~eeq~r 296 (410)
T KOG4715|consen 222 RMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKMAAEIAQAEEQAR 296 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHH
Confidence 4566777888899999999999999999987654 44444455556666644 2466665555555544443
No 76
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=30.63 E-value=2.5e+02 Score=24.11 Aligned_cols=71 Identities=14% Similarity=0.277 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCC-CCCCCCHHHHHHHHHHHHHhhcc
Q 030827 53 QTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYN-VPDDIDEDELMGELDALEADMGM 126 (171)
Q Consensus 53 ~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~-~~~~~DedELe~EL~~Le~E~~~ 126 (171)
.+...+......|..+...++ ++|...++++........+|+.-|..... .+ -+-.+|.++-+.|..++..
T Consensus 138 ~l~~~~n~~~~~L~~~~~~~~-~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g--~~~n~L~DqRD~ll~~LS~ 209 (322)
T TIGR02492 138 ALANSFNQTSNELQDLRKGIN-AEIKSAVTEINSLLKQIASLNKEIQQVEAKSG--QDANDLLDQRDLLLKELSQ 209 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCchHhHHHHHHHHHHHHh
Confidence 344555556666666655543 56666666666666666666665543211 11 2334566666666665543
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.21 E-value=5e+02 Score=24.88 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=56.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHHHHHhh--ccCChhHHHHHHH
Q 030827 14 AMRVLKQKRM-YEGQRDMLYNQTFNLDQVAFASEGI----KDAQQ----TMTALKSANKELKGMM--KTVKIQDIDNLQD 82 (171)
Q Consensus 14 Al~~LkrKK~-~Ek~L~k~~~~l~nLe~~~~~IE~a----~~n~~----v~~alk~g~~aLK~~~--~~~~id~Ve~lmd 82 (171)
+...||.++. ++.-+.++.+...++.+-....+.. +.+.+ =++.++.-++-||++- +++++.+|+.+--
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~ 339 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNL 339 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3455666665 6666666666666655444333322 11111 1346677777787763 5799999999999
Q ss_pred HHHHHHHhHHHHHHHhcc
Q 030827 83 EMMDLMDVSHEIQETLGR 100 (171)
Q Consensus 83 ei~E~~e~~~EI~eaLs~ 100 (171)
+-.+.....+.|+-.+.+
T Consensus 340 Er~~l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELDR 357 (581)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888766543
No 78
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=30.18 E-value=2.6e+02 Score=23.63 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhc-cCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHH
Q 030827 56 TALKSANKELKGMMK-TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121 (171)
Q Consensus 56 ~alk~g~~aLK~~~~-~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le 121 (171)
-||..+.++.++..+ +++..++..+++.+.+.+ .|+.+++.... .+.+.+++||-.|.
T Consensus 131 PaL~~A~ki~~raa~~Gfdw~~~~~~~~k~~EE~---~El~~a~~~~~-----~~~~~ieeElGDlL 189 (248)
T TIGR00444 131 PALMRAAKIQKRCAKVGFDWEDVSPVWDKVYEEL---DEVMYEARQAV-----VEQNKLEEEMGDLL 189 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH---HHHHHHHhccc-----cchHHHHHHHHHHH
Confidence 356666677777654 678888888888875544 55566664421 24456666766665
No 79
>PHA03161 hypothetical protein; Provisional
Probab=29.46 E-value=2.8e+02 Score=21.83 Aligned_cols=16 Identities=25% Similarity=0.681 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 030827 74 IQDIDNLQDEMMDLMD 89 (171)
Q Consensus 74 id~Ve~lmdei~E~~e 89 (171)
++.+|++.|.+.|..+
T Consensus 88 l~~~E~L~drv~eLke 103 (150)
T PHA03161 88 LSAAEDLQDKILELKE 103 (150)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544443
No 80
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=29.11 E-value=2.1e+02 Score=20.22 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 10 IKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTM 55 (171)
Q Consensus 10 ~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~ 55 (171)
+.......|++|......++.+...-....++...++..+.....+
T Consensus 10 n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~ 55 (108)
T PF02403_consen 10 NPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNEL 55 (108)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4445555566665555566666666666666666666666555433
No 81
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=29.06 E-value=2.6e+02 Score=23.69 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhc-cCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHH
Q 030827 56 TALKSANKELKGMMK-TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121 (171)
Q Consensus 56 ~alk~g~~aLK~~~~-~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le 121 (171)
-||..+.++.++..+ +++.++++.++..+.| ...|+.+++.. .|.+.+++||-.|.
T Consensus 142 PaL~~a~KiqkrAa~~Gf~w~~~~~~~~kl~E---E~~El~~Ai~~-------~~~~~l~eElGDlL 198 (262)
T PRK09562 142 PALMRAYKIQKKAARVGFDWESLEPVLDKVEE---EIDELKEALAQ-------GDQAKIEEEFGDLL 198 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH---HHHHHHHHHHc-------cChhhHHHHHHHHH
Confidence 456777777777764 6788888877776644 44556666644 24456666766665
No 82
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=28.67 E-value=1.8e+02 Score=22.71 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=21.9
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHHhHH
Q 030827 64 ELKGMMKTVKIQDIDNLQDEMMDLMDVSH 92 (171)
Q Consensus 64 aLK~~~~~~~id~Ve~lmdei~E~~e~~~ 92 (171)
.|++..+.++.++.++++++-+|..++..
T Consensus 9 ~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~ 37 (181)
T PF08006_consen 9 ELEKYLKKLPEEEREEILEYYEEYFDDAG 37 (181)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 44555567899999999999888776543
No 83
>PRK14162 heat shock protein GrpE; Provisional
Probab=28.56 E-value=1.1e+02 Score=25.03 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.9
Q ss_pred HHHHHhc
Q 030827 93 EIQETLG 99 (171)
Q Consensus 93 EI~eaLs 99 (171)
.+..+|.
T Consensus 128 ~l~~vL~ 134 (194)
T PRK14162 128 HLVKALK 134 (194)
T ss_pred HHHHHHH
Confidence 3344443
No 84
>PRK14159 heat shock protein GrpE; Provisional
Probab=28.21 E-value=2.3e+02 Score=22.75 Aligned_cols=10 Identities=0% Similarity=-0.001 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 030827 57 ALKSANKELK 66 (171)
Q Consensus 57 alk~g~~aLK 66 (171)
+++...+.|.
T Consensus 105 Gv~mi~k~l~ 114 (176)
T PRK14159 105 GVQNTLDLFL 114 (176)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 85
>PF07996 T4SS: Type IV secretion system proteins; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation []. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC [] as well as the P-type protein TrbJ and the F-type protein TraE [].; PDB: 1R8I_A.
Probab=28.14 E-value=1.3e+02 Score=23.64 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=40.0
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 4 GPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMT 56 (171)
Q Consensus 4 g~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~ 56 (171)
+..+...+......+..+...++........+.+|+.++..|..+.+-+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~i~~L~~~i~~a~d~K~~~D 156 (195)
T PF07996_consen 104 DSRNQICQRQQNSAAQDKAFAEQAYKQAEQRLEQIQQLMQQINSAKDPKEIAD 156 (195)
T ss_dssp TTHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHTTS--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 34455566667777778888899999999999999999999999887777665
No 86
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=27.75 E-value=3.2e+02 Score=21.85 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--C-ChhHHHHHHHHHHHHHH
Q 030827 17 VLKQKRMYEGQRDMLYNQT----FNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKT--V-KIQDIDNLQDEMMDLMD 89 (171)
Q Consensus 17 ~LkrKK~~Ek~L~k~~~~l----~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~--~-~id~Ve~lmdei~E~~e 89 (171)
+-.....+..+++++...+ ..|..+....+.......+.++-+..+.++..+... + .++.+++=++.+....+
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~ 182 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAE 182 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433 344445555555666666777777777777766532 2 56666666666666666
Q ss_pred hHHHHHH
Q 030827 90 VSHEIQE 96 (171)
Q Consensus 90 ~~~EI~e 96 (171)
-..++.+
T Consensus 183 a~~el~~ 189 (221)
T PF04012_consen 183 ASAELAD 189 (221)
T ss_pred HHHHhcc
Confidence 6666653
No 87
>PRK10807 paraquat-inducible protein B; Provisional
Probab=27.49 E-value=5.2e+02 Score=24.26 Aligned_cols=23 Identities=0% Similarity=-0.184 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030827 25 EGQRDMLYNQTFNLDQVAFASEG 47 (171)
Q Consensus 25 Ek~L~k~~~~l~nLe~~~~~IE~ 47 (171)
++.+.++...+.++...+.+++.
T Consensus 435 e~i~~~l~~tL~~~~~tl~~l~~ 457 (547)
T PRK10807 435 NPMIEQATSTLSESQRTMRELQT 457 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555444444443
No 88
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=26.79 E-value=2.7e+02 Score=25.64 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=17.5
Q ss_pred HHHHHh-hccCChhHHHHHHHHHH
Q 030827 63 KELKGM-MKTVKIQDIDNLQDEMM 85 (171)
Q Consensus 63 ~aLK~~-~~~~~id~Ve~lmdei~ 85 (171)
.+|+++ |.+|+.+-|+++.+||.
T Consensus 152 ~i~~~l~n~~~~pe~v~~~q~di~ 175 (548)
T COG5665 152 NILKKLQNNEMDPEPVEEFQDDIK 175 (548)
T ss_pred HHHHHHhccCCChhhHHHHHHHHH
Confidence 356666 45799999999998884
No 89
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=26.67 E-value=3.2e+02 Score=21.58 Aligned_cols=60 Identities=7% Similarity=0.019 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHH
Q 030827 21 KRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV-KIQDIDNL 80 (171)
Q Consensus 21 KK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~-~id~Ve~l 80 (171)
.++..+.++.....+..|++...+|.+.+....+.+-.+.+...++.+-+.= .+..+++.
T Consensus 70 ~~~~~~~l~ea~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~F 130 (199)
T PF10112_consen 70 YEYIREILEEAKEKIRRIEKAIKRIRDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKF 130 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHH
Confidence 3467888999999999999999999999999999999999988888876541 33444443
No 90
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=26.55 E-value=1.9e+02 Score=22.11 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=23.4
Q ss_pred HHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030827 93 EIQETLGRSYNVPDDIDEDELMGELDALEADMG 125 (171)
Q Consensus 93 EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~ 125 (171)
-+..+|++ +++|.--|=++|...+++|..++.
T Consensus 95 rV~~aL~r-LgvPs~~dv~~L~~rId~L~~~v~ 126 (132)
T PF05597_consen 95 RVARALNR-LGVPSRKDVEALSARIDQLTAQVE 126 (132)
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46777776 556655677888888888887654
No 91
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=26.40 E-value=3.3e+02 Score=25.88 Aligned_cols=53 Identities=13% Similarity=0.021 Sum_probs=32.9
Q ss_pred ccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 030827 70 KTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (171)
Q Consensus 70 ~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~ 124 (171)
..++.+.+.+-++++.+.+...+.-==..+.+.- .|.+-|-|.+||.+|+.+.
T Consensus 23 ~~~~~~~~~~~i~~L~~~l~~~~~~YY~~~~p~I--sD~eYD~L~~eL~~LE~~~ 75 (562)
T PRK08097 23 PDWSPARAQEEIAALQQQLAQWDDAYWRQGKSEV--DDEVYDQLRARLTQWQRCF 75 (562)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHHHhC
Confidence 3466677766666666666665543333344432 3566778888888887664
No 92
>KOG2459 consensus GPI transamidase complex, GPI17/PIG-S component, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=26.26 E-value=3.3e+02 Score=25.75 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 030827 16 RVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 16 ~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~ 72 (171)
-.|+|+...+. +.+....+.+|-++..+|.+..++.+|-..-+.+-.++....+.+
T Consensus 409 drllr~~~v~n-l~~AssTL~SL~kL~~qis~mvI~dEV~~~V~~al~~~~~a~~~l 464 (536)
T KOG2459|consen 409 DRLLRRRIVEN-LMTASSTLQSLAKLVQQISNMVIPDEVADRVTRALAALLQAIDAL 464 (536)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555554 777888888888888888888777777666666655555544333
No 93
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.18 E-value=2.5e+02 Score=20.12 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMT 56 (171)
Q Consensus 17 ~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~ 56 (171)
+......|+.++..+..++..|...+..++.+......+.
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567778889999999999999999888888776666554
No 94
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=26.17 E-value=2.2e+02 Score=20.06 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChhHHHHHHHHHHH-HHHhHHHHHHHhccCCCCCCCCCHHHHH
Q 030827 37 NLDQVAFASEGIKDAQQTMTALKSANKELKGMMKT-VKIQDIDNLQDEMMD-LMDVSHEIQETLGRSYNVPDDIDEDELM 114 (171)
Q Consensus 37 nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~-~~id~Ve~lmdei~E-~~e~~~EI~eaLs~~~~~~~~~DedELe 114 (171)
........|+.++.+..++.-|= ...... ...++- +++.++.+ ......-|...+... .|++ +.
T Consensus 5 ~~~k~~~~l~~v~~~~~lL~emL------~~~~~~~~~~~~~-el~~eL~~~ck~~r~~i~~li~~~------~dee-~l 70 (100)
T PF03127_consen 5 QVSKRRSELEKVKNNAKLLNEML------DNYDPGEESSSDN-ELIQELYESCKSMRPRIQRLIEEV------EDEE-LL 70 (100)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH------HHTTTTTSTHHHH-HHHHHHHHHHHHHHHHHHHHHHTS------TTCH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HhcCCCCCCccch-HHHHHHHHHHHHHHHHHHHHHhhc------CcHH-HH
Confidence 34556666777777666665443 222222 222222 35555544 445556667777552 2333 66
Q ss_pred HHHHHHHHh
Q 030827 115 GELDALEAD 123 (171)
Q Consensus 115 ~EL~~Le~E 123 (171)
.+|=.+-.+
T Consensus 71 ~~lL~~ND~ 79 (100)
T PF03127_consen 71 GELLQANDE 79 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555444
No 95
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=26.15 E-value=5.6e+02 Score=24.14 Aligned_cols=66 Identities=11% Similarity=0.237 Sum_probs=42.7
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHhHHH-------HHHHhccCCCCCCCCCHHHHHHHHHHHHHhhcccc
Q 030827 63 KELKGMMKTVKIQDIDNLQDEMMDLMDVSHE-------IQETLGRSYNVPDDIDEDELMGELDALEADMGMED 128 (171)
Q Consensus 63 ~aLK~~~~~~~id~Ve~lmdei~E~~e~~~E-------I~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~ 128 (171)
..+++..+.++.+++..++..+.+.....+- +.-++-+-.......+-++|..-++.|+..+....
T Consensus 310 e~l~k~~~~~s~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~~~~~~~~~~~~~~~~~e~~~~~~~ 382 (563)
T PRK06647 310 ERLPEKLREFDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRLKDYVPNHELIKQIQDLESKLLEHA 382 (563)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcCC
Confidence 4455555568999999999999888764432 11122111111234688999999999998877544
No 96
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=25.99 E-value=90 Score=22.70 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=26.2
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhc
Q 030827 61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLG 99 (171)
Q Consensus 61 g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs 99 (171)
-++.++....+.+.+.|++.++.+.+.++....-...|.
T Consensus 7 ~~~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~ 45 (131)
T PF05103_consen 7 RNKEFKKSMRGYDPDEVDDFLDELAEELERLQRENAELK 45 (131)
T ss_dssp HH----EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555688999999999999988887755544443
No 97
>PRK14146 heat shock protein GrpE; Provisional
Probab=25.95 E-value=1.2e+02 Score=25.19 Aligned_cols=7 Identities=29% Similarity=0.301 Sum_probs=2.8
Q ss_pred HHHHHhc
Q 030827 93 EIQETLG 99 (171)
Q Consensus 93 EI~eaLs 99 (171)
.+..+|.
T Consensus 143 ~l~~~L~ 149 (215)
T PRK14146 143 EFYSVLE 149 (215)
T ss_pred HHHHHHH
Confidence 3334443
No 98
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.44 E-value=6.7e+02 Score=24.83 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHhHHHHHHHhccCCCC--CC
Q 030827 30 MLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV-KIQDIDNLQDEMMDLMDVSHEIQETLGRSYNV--PD 106 (171)
Q Consensus 30 k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~-~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~--~~ 106 (171)
........|..-+..++.|+++. |+..=...+..|+.+-..+ .+|++|.-+|-..+...-..|-=+.++..... -.
T Consensus 190 eaeaFaE~L~reLq~LdgANiqs-ilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~ 268 (867)
T KOG2148|consen 190 EAEAFAERLKRELQALDAANIQS-ILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQ 268 (867)
T ss_pred hHHHHHHHHHHHHHhhhcccHHH-HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 33445555666666677666654 3344445555555554444 35666666666655555555555555443221 03
Q ss_pred CCCHHHHHHHHHHHHHhhc
Q 030827 107 DIDEDELMGELDALEADMG 125 (171)
Q Consensus 107 ~~DedELe~EL~~Le~E~~ 125 (171)
..+.--|.+||+.+.+.+.
T Consensus 269 n~Nn~kL~eEl~kvin~L~ 287 (867)
T KOG2148|consen 269 NVNNKKLIEELDKVINRLD 287 (867)
T ss_pred ccchHHHHHHHHHHHHhcc
Confidence 4678899999999998775
No 99
>PHA03185 UL14 tegument protein; Provisional
Probab=25.36 E-value=4e+02 Score=22.14 Aligned_cols=29 Identities=14% Similarity=-0.104 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHhhccccC----CCCCCCC
Q 030827 108 IDEDELMGELDALEADMGMEDE----AGVPSYL 136 (171)
Q Consensus 108 ~DedELe~EL~~Le~E~~~e~~----~~~p~~~ 136 (171)
.+++++..+=++|...-..+.- |++||.+
T Consensus 136 ~~~~wl~e~DEaLLt~W~Le~aP~v~~~~~s~~ 168 (214)
T PHA03185 136 PADGWMSPEDSDLLIMWQLGSAPAVRPGDLSGP 168 (214)
T ss_pred cccccccccHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 4566666666667665443332 4445444
No 100
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.31 E-value=1.1e+02 Score=21.13 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 030827 74 IQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (171)
Q Consensus 74 id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~ 124 (171)
...+++++..+.+.++..+.--+.|... -..++.++.++...+
T Consensus 57 ~~~~~~~~~~L~~~~~~~~~~i~~l~~~--------~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 57 KQDKEEAIEELEERIEKLEKEIKKLEKQ--------LKYLEKKLKELKKKL 99 (106)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 3467788888877777776655555442 256667777766554
No 101
>PHA02698 hypothetical protein; Provisional
Probab=25.23 E-value=2.2e+02 Score=20.13 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=31.9
Q ss_pred CChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHh
Q 030827 72 VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEAD 123 (171)
Q Consensus 72 ~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E 123 (171)
-+.++.-+++|.+-|.+....|.+ .|++ ..-+||..||+.|..-
T Consensus 41 CsPEdMs~mLD~FLediq~ksElq-LLsq-------EEMdELl~EledlarL 84 (89)
T PHA02698 41 CSPEDMSDMLDNFLEDIQYKSELQ-LLSQ-------EEMDELLVELEDLARL 84 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HhhH-------HHHHHHHHHHHHHHHH
Confidence 367777888888888888877764 4444 3557899998888653
No 102
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=24.86 E-value=1.8e+02 Score=18.37 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827 38 LDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (171)
Q Consensus 38 Le~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei 84 (171)
+.+.+..+..++.+.+.| |+..-+..-|+++... ..+++.+++++
T Consensus 2 vkq~lAslK~~qA~Le~f-al~T~d~~AK~~y~~~-a~~l~~ii~~L 46 (50)
T PF07870_consen 2 VKQTLASLKKAQADLETF-ALQTQDQEAKQMYEQA-AQQLEEIIQDL 46 (50)
T ss_pred HHHHHHHHHHHHhhHHHH-HhhcCCHHHHHHHHHH-HHHHHHHHHHh
Confidence 445566666666666655 3444455555554433 24455555544
No 103
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.70 E-value=5.8e+02 Score=23.87 Aligned_cols=113 Identities=18% Similarity=0.270 Sum_probs=60.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 030827 7 QEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDA------QQTMTALKSANKELKGMMKTVKIQDIDNL 80 (171)
Q Consensus 7 ~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n------~~v~~alk~g~~aLK~~~~~~~id~Ve~l 80 (171)
+...+..-+.+|-.+..|-..+..+..++.+++......+....+ .+++..++.....|+.+...+ +.=+.++
T Consensus 142 ~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~I-P~l~~~l 220 (560)
T PF06160_consen 142 KEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDI-PKLYKEL 220 (560)
T ss_pred HHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHH
Confidence 334444445566666666666777777777777777776666555 344555555555555553333 1223333
Q ss_pred HHHHHHHHHhHH-HHHHHhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 030827 81 QDEMMDLMDVSH-EIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (171)
Q Consensus 81 mdei~E~~e~~~-EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~ 124 (171)
-.++-++++... -+.++...++. ++..+++.++..+...+
T Consensus 221 ~~~~P~ql~eL~~gy~~m~~~gy~----l~~~~i~~~i~~i~~~l 261 (560)
T PF06160_consen 221 QKEFPDQLEELKEGYREMEEEGYY----LEHLDIEEEIEQIEEQL 261 (560)
T ss_pred HHHhHHHHHHHHHHHHHHHHCCCC----CCCCCHHHHHHHHHHHH
Confidence 333333333322 23334445554 34556667777766543
No 104
>PRK11352 regulator protein FrmR; Provisional
Probab=24.67 E-value=2.6e+02 Score=19.86 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 030827 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 22 K~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~ 72 (171)
+.+-+.|.+..+|+.-| ...||.-..=.+|+..+.+...||..+...+
T Consensus 9 ~~ll~RL~Ri~GQv~gi---~~Mie~~~~C~dil~Ql~Avr~Al~~~~~~i 56 (91)
T PRK11352 9 KKVLTRVRRIRGQIDAL---ERSLEGDAECRAILQQIAAVRGAANGLMAEV 56 (91)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555554444 4445666677888999999999988775544
No 105
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=24.06 E-value=2.4e+02 Score=19.28 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 030827 56 TALKSANKELKG 67 (171)
Q Consensus 56 ~alk~g~~aLK~ 67 (171)
..+...+..+..
T Consensus 51 ~ll~~~n~l~~d 62 (90)
T PF06103_consen 51 DLLHNTNELLED 62 (90)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 106
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=23.92 E-value=1.8e+02 Score=19.45 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030827 32 YNQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 32 ~~~l~nLe~~~~~IE~a~~n~-~v~~alk~g~~aLK~~~~~~ 72 (171)
...+..|++++.++|+-.... +.+..|+.|...+|..++.+
T Consensus 4 Ee~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L 45 (67)
T TIGR01280 4 EEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKL 45 (67)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777665554 46778888888888886655
No 107
>PRK14149 heat shock protein GrpE; Provisional
Probab=23.50 E-value=1.3e+02 Score=24.49 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=3.3
Q ss_pred HHHHHHhc
Q 030827 92 HEIQETLG 99 (171)
Q Consensus 92 ~EI~eaLs 99 (171)
+.+..+|.
T Consensus 124 k~l~~vL~ 131 (191)
T PRK14149 124 EKLHEVLA 131 (191)
T ss_pred HHHHHHHH
Confidence 33344444
No 108
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=23.45 E-value=2.9e+02 Score=25.37 Aligned_cols=62 Identities=24% Similarity=0.227 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 030827 11 KARAMRVLKQKRMYEG------------QRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 11 K~~Al~~LkrKK~~Ek------------~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~ 72 (171)
-++|+.|||.|++... ..-+.++.+..-..-+..++.|+-+.+.+=+|.--+.-||++...+
T Consensus 135 ~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 135 INRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 4688999999987533 3334556666667778888899999998888888888888887665
No 109
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.75 E-value=2.3e+02 Score=19.43 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030827 31 LYNQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 31 ~~~~l~nLe~~~~~IE~a~~n~-~v~~alk~g~~aLK~~~~~~ 72 (171)
+...+..|++++..+|+..... +.+..|+.|...++..++.+
T Consensus 8 fEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L 50 (75)
T PRK14064 8 FEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKL 50 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777765544 46788999999988886655
No 110
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.65 E-value=4.7e+02 Score=22.05 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 030827 17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDV 90 (171)
Q Consensus 17 ~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~ 90 (171)
.++|||..-+.+......+..+.+...+|+..-...+...|+..-....+.+..-..+.=|..+-..+++....
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~ 179 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLEL 179 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHH
Confidence 34444444445666667777888888888888888888888877776666654322444455555555444433
No 111
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.49 E-value=2.7e+02 Score=23.36 Aligned_cols=27 Identities=4% Similarity=0.257 Sum_probs=19.8
Q ss_pred HHHHhh-ccCChhHHHHHHHHHHHHHHh
Q 030827 64 ELKGMM-KTVKIQDIDNLQDEMMDLMDV 90 (171)
Q Consensus 64 aLK~~~-~~~~id~Ve~lmdei~E~~e~ 90 (171)
+|+.+. ..++.+.|++|-++|.--++.
T Consensus 185 lLR~L~N~~l~~e~V~~ikedieyYve~ 212 (233)
T PF04065_consen 185 LLRLLDNDELDPEQVEDIKEDIEYYVES 212 (233)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHc
Confidence 445553 458999999999988766664
No 112
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.11 E-value=3.3e+02 Score=20.12 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHH
Q 030827 17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQE 96 (171)
Q Consensus 17 ~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~e 96 (171)
.+.+-..+.+++.....+...|+..+..++.+. .=++.+...+.+.|.+-.-+=.-+.+++..++.+.++..+.--.
T Consensus 12 ~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~---~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik 88 (121)
T PRK09343 12 QLAQLQQLQQQLERLLQQKSQIDLELREINKAL---EELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSR 88 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666655555544333 33445556666666665544334666777777666666653333
Q ss_pred HhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 030827 97 TLGRSYNVPDDIDEDELMGELDALEADM 124 (171)
Q Consensus 97 aLs~~~~~~~~~DedELe~EL~~Le~E~ 124 (171)
.|.. -.+.|...+.+++..+
T Consensus 89 ~lek--------q~~~l~~~l~e~q~~l 108 (121)
T PRK09343 89 TLEK--------QEKKLREKLKELQAKI 108 (121)
T ss_pred HHHH--------HHHHHHHHHHHHHHHH
Confidence 3322 2345555555555443
No 113
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.04 E-value=2.2e+02 Score=19.56 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030827 31 LYNQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 31 ~~~~l~nLe~~~~~IE~a~~n~-~v~~alk~g~~aLK~~~~~~ 72 (171)
+...+..|++++.++|+-.... +.+..|+.|.+.++..++.+
T Consensus 6 fEeal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~~L 48 (75)
T PRK14066 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKL 48 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888887765554 46788999999998887665
No 114
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=21.79 E-value=4e+02 Score=20.87 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHh
Q 030827 111 DELMGELDALEAD 123 (171)
Q Consensus 111 dELe~EL~~Le~E 123 (171)
+||+.||+.|...
T Consensus 103 eel~~el~~l~~~ 115 (146)
T PF05852_consen 103 EELEFELERLQSA 115 (146)
T ss_pred HHHHHHHHHHhcc
Confidence 4666777777655
No 115
>PLN02678 seryl-tRNA synthetase
Probab=21.70 E-value=6.3e+02 Score=23.19 Aligned_cols=45 Identities=7% Similarity=-0.034 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 9 AIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQ 53 (171)
Q Consensus 9 g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~ 53 (171)
.+...-+..|++|..-...++.+...-....+++..++..+....
T Consensus 13 ~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN 57 (448)
T PLN02678 13 GDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFN 57 (448)
T ss_pred cCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666653222356666665666666666666655554
No 116
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.65 E-value=4.2e+02 Score=21.11 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030827 36 FNLDQVAFASEGIKDAQQTMTALKSANKELKGMM 69 (171)
Q Consensus 36 ~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~ 69 (171)
.+|..++.-++.-+........+..-++.|+.-+
T Consensus 80 ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~ 113 (161)
T TIGR02894 80 LTLQDVISFLQNLKTTNPSDQALQKENERLKNQN 113 (161)
T ss_pred CCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 4455555555555544444444445555554443
No 117
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=21.53 E-value=3.8e+02 Score=26.47 Aligned_cols=44 Identities=9% Similarity=0.131 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030827 28 RDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKT 71 (171)
Q Consensus 28 L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~ 71 (171)
|.++...+.-|+.++..+.....-..++..-+.-..+.+.+...
T Consensus 362 l~~~~~~~~~~~g~~~~~~~~d~vi~~ir~~~~~~~~~~~L~~~ 405 (800)
T TIGR01063 362 LRKAEERAHILEGLLIALDNIDEVIALIRASQNTEEAKTRLVER 405 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHh
Confidence 44555555555555554444333333444444444555555554
No 118
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=20.88 E-value=2.2e+02 Score=19.28 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 8 EAIKARAMRVLKQKRMYEGQRDMLYNQTFNL 38 (171)
Q Consensus 8 ~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nL 38 (171)
-|+.+.+...||-++.|.......++++..|
T Consensus 35 lgk~es~~~alrlal~ys~r~~e~~~~llal 65 (67)
T PF10506_consen 35 LGKYESNATALRLALKYSERCKEAYEVLLAL 65 (67)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777778888888888888887777665
No 119
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.85 E-value=2.3e+02 Score=19.80 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 030827 31 LYNQTFNLDQVAFASEGIKDAQ-QTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 31 ~~~~l~nLe~~~~~IE~a~~n~-~v~~alk~g~~aLK~~~~~~ 72 (171)
+...+..|++++.++++-.... +.+..|+.|...++..++.+
T Consensus 9 fEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L 51 (80)
T PRK14067 9 FEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQL 51 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777665544 46788999999998886654
Done!