Query 030827
Match_columns 171
No_of_seqs 134 out of 758
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3um3_B Charged multivesicular 99.7 2.1E-16 7.3E-21 115.6 9.4 83 70-162 1-83 (104)
2 2gd5_A Charged multivesicular 99.5 1.7E-15 5.9E-20 119.9 0.6 116 5-126 47-166 (179)
3 2luh_B Vacuolar protein-sortin 99.3 1E-12 3.4E-17 86.3 1.6 54 72-125 1-56 (59)
4 3frt_A Charged multivesicular 99.0 1.1E-10 3.9E-15 95.2 4.2 131 5-135 47-179 (218)
5 2lxm_B Charged multivesicular 98.9 1.9E-10 6.6E-15 75.1 -0.8 47 88-138 1-47 (57)
6 4abm_A Charged multivesicular 98.8 5.8E-09 2E-13 72.6 5.0 39 8-46 41-79 (79)
7 3uly_B Charged multivesicular 98.5 1.4E-07 4.9E-12 63.6 6.0 34 100-137 1-34 (69)
8 2gd5_A Charged multivesicular 86.4 0.15 5.3E-06 39.4 0.3 6 150-155 173-178 (179)
9 1oxz_A ADP-ribosylation factor 73.1 11 0.00036 29.5 6.8 40 79-124 107-147 (186)
10 1naf_A ADP-ribosylation factor 68.1 6.1 0.00021 30.1 4.3 40 79-124 91-131 (158)
11 2inr_A DNA topoisomerase 4 sub 59.2 95 0.0033 27.8 11.0 87 35-126 406-500 (514)
12 3qne_A Seryl-tRNA synthetase, 58.2 1E+02 0.0034 27.4 12.4 46 9-54 13-58 (485)
13 2lch_A Protein OR38; structura 56.1 46 0.0016 22.8 7.6 66 22-87 6-71 (113)
14 3kyj_A CHEA3, putative histidi 55.8 57 0.002 23.8 8.9 65 22-86 11-75 (144)
15 3uly_B Charged multivesicular 54.8 14 0.0005 24.4 3.7 11 146-156 59-69 (69)
16 3um3_B Charged multivesicular 54.2 31 0.0011 24.3 5.7 12 128-139 70-81 (104)
17 1deq_A Fibrinogen (alpha chain 52.5 1.1E+02 0.0039 26.4 9.9 23 76-98 135-157 (390)
18 1wrd_A TOM1, target of MYB pro 51.2 38 0.0013 23.6 5.7 74 37-124 7-82 (103)
19 3frt_A Charged multivesicular 49.5 7.9 0.00027 30.9 2.1 39 22-60 57-95 (218)
20 1tqg_A Chemotaxis protein CHEA 48.6 58 0.002 21.8 7.7 67 22-88 5-71 (105)
21 4adz_A CSOR; transcription, co 46.2 88 0.003 23.2 7.7 61 18-81 48-108 (136)
22 2ld6_A Chemotaxis protein CHEA 45.0 83 0.0028 22.5 7.4 65 23-87 5-69 (139)
23 2nov_A DNA topoisomerase 4 sub 44.1 1.5E+02 0.0052 26.4 9.8 87 35-126 382-476 (496)
24 1o3x_A ADP-ribosylation factor 43.2 11 0.00038 28.0 1.9 86 26-124 33-122 (140)
25 1i5n_A Chemotaxis protein CHEA 41.8 61 0.0021 23.5 5.9 60 22-81 7-66 (146)
26 2lp4_A Chemotaxis protein CHEA 38.1 71 0.0024 24.8 6.1 59 23-81 8-66 (225)
27 3ilw_A DNA gyrase subunit A; D 37.4 2.2E+02 0.0075 25.2 11.4 93 28-125 361-461 (470)
28 3m91_B Prokaryotic ubiquitin-l 36.8 17 0.00058 21.9 1.6 19 73-91 12-30 (44)
29 2xcs_B DNA gyrase subunit B, D 34.6 2.9E+02 0.0098 25.7 10.9 87 34-125 588-682 (692)
30 1ez3_A Syntaxin-1A; three heli 34.1 57 0.0019 22.6 4.5 11 112-122 47-57 (127)
31 3etw_A Adhesin A; antiparallel 33.1 1.2E+02 0.004 21.9 6.0 60 25-84 40-101 (119)
32 2kjg_A Archaeal protein SSO690 31.4 36 0.0012 23.7 2.8 35 64-98 11-45 (99)
33 4abx_A DNA repair protein RECN 31.0 1.6E+02 0.0055 21.8 10.3 82 27-111 36-122 (175)
34 3cra_A Protein MAZG; tandem-re 29.8 2.1E+02 0.0072 23.3 7.7 58 56-121 142-200 (265)
35 1fio_A SSO1 protein; four heli 29.2 75 0.0026 23.7 4.7 10 112-121 46-55 (196)
36 2pih_A Protein YMCA; regulate 25.7 2E+02 0.0067 21.0 7.4 11 88-98 82-92 (151)
37 1wlp_A Cytochrome B-245 light 24.7 22 0.00075 19.1 0.6 15 156-170 7-21 (26)
38 2pih_A Protein YMCA; regulate 23.5 2.2E+02 0.0074 20.8 8.4 32 36-67 7-38 (151)
39 2dq0_A Seryl-tRNA synthetase; 23.5 3.6E+02 0.012 23.3 13.4 44 10-53 10-55 (455)
40 1s94_A S-syntaxin; three helix 22.9 1.1E+02 0.0039 22.6 4.7 47 75-123 43-89 (180)
41 3oiq_B DNA polymerase alpha ca 22.3 54 0.0019 18.6 2.0 13 74-86 13-25 (36)
42 2dq3_A Seryl-tRNA synthetase; 22.2 3.7E+02 0.013 22.9 9.1 41 10-50 10-51 (425)
43 1b04_A Protein (DNA ligase); D 21.6 3.5E+02 0.012 22.4 7.9 42 81-124 10-51 (318)
44 1tu3_F RAB GTPase binding effe 20.7 2E+02 0.0067 19.2 5.2 62 20-83 6-67 (79)
45 1zvu_A Topoisomerase IV subuni 20.5 5.2E+02 0.018 24.1 10.2 53 70-127 397-449 (716)
46 3aai_A Copper homeostasis oper 20.3 1.6E+02 0.0055 20.0 4.6 44 26-72 18-62 (94)
No 1
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=115.60 Aligned_cols=83 Identities=25% Similarity=0.482 Sum_probs=66.9
Q ss_pred ccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcccccC
Q 030827 70 KTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELN 149 (171)
Q Consensus 70 ~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~~~~~~~~~~~~~ 149 (171)
++|+||+|+++||+++|++++++||+++|+++++++.++|++||++||++|+.+...+....++. +. .+.
T Consensus 1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~---~~-------~~~ 70 (104)
T 3um3_B 1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISG---PE-------TVP 70 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCC---CC-------CCC
Confidence 36899999999999999999999999999999876678999999999999999876554433331 11 236
Q ss_pred CCCCCCCCCCCCC
Q 030827 150 LPTAPSGHASAQH 162 (171)
Q Consensus 150 lp~~p~~~~~~~~ 162 (171)
||+||++.++..+
T Consensus 71 LP~vP~~~lp~~p 83 (104)
T 3um3_B 71 LPNVPSIALPSKP 83 (104)
T ss_pred CCCCCCCcCCCCc
Confidence 8888888766443
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=99.51 E-value=1.7e-15 Score=119.90 Aligned_cols=116 Identities=18% Similarity=0.238 Sum_probs=83.5
Q ss_pred hhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 030827 5 PAQEAIKA----RAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNL 80 (171)
Q Consensus 5 ~~~~g~K~----~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~l 80 (171)
+.++|++. .|+.++|.||+ ..++..+..+|+.+.++++++.++..|..+|+.++++|+.+|+.|++++|..+
T Consensus 47 a~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~ 122 (179)
T 2gd5_A 47 AAKKGQKDVCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQAT 122 (179)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34555544 68888888875 67778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 030827 81 QDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM 126 (171)
Q Consensus 81 mdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~ 126 (171)
|+++.++++++++|+++|+.+++. ..|+++.++|.+++...+..
T Consensus 123 M~e~~~e~~~~~~~~E~m~d~~~~--~~~~~~~eee~d~~v~kVl~ 166 (179)
T 2gd5_A 123 MRELSKEMMKAGIIEEMLEDTFES--MDDQEEMEEEAEMEIDRILF 166 (179)
T ss_dssp HHHHHHHHHHHTSCC---------------------CTTHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--cccCCCcHHHHHHHHHHHHH
Confidence 999999999999999999988753 12334444555555544443
No 3
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=1e-12 Score=86.33 Aligned_cols=54 Identities=41% Similarity=0.617 Sum_probs=50.3
Q ss_pred CChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCC--CCCCHHHHHHHHHHHHHhhc
Q 030827 72 VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVP--DDIDEDELMGELDALEADMG 125 (171)
Q Consensus 72 ~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~--~~~DedELe~EL~~Le~E~~ 125 (171)
|+||+|++++|+|.+.++.++||+++|++++++| +++|++||++||++|..|-+
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~~ 56 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQEDF 56 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcccc
Confidence 5799999999999999999999999999999887 47999999999999998754
No 4
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=95.20 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=92.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827 5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM 84 (171)
Q Consensus 5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei 84 (171)
++++|++..|+.|-|---...++..+++....+|..+.+++.++.++..|..+|+.++++|+.+|+.|++.+|..+|++|
T Consensus 47 aakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~ef 126 (218)
T 3frt_A 47 AAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMREL 126 (218)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56788888888888877777888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhccCCCC--CCCCCHHHHHHHHHHHHHhhccccCCCCCCC
Q 030827 85 MDLMDVSHEIQETLGRSYNV--PDDIDEDELMGELDALEADMGMEDEAGVPSY 135 (171)
Q Consensus 85 ~E~~e~~~EI~eaLs~~~~~--~~~~DedELe~EL~~Le~E~~~e~~~~~p~~ 135 (171)
..++++.+-+.++|...++. .++.+++|.+.|.+....|+.....+.+|+.
T Consensus 127 ekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~~l~~~p~~ 179 (218)
T 3frt_A 127 SKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSK 179 (218)
T ss_dssp HHHHHHHSCC----------------CTTSTTTHHHHHHHTC-----------
T ss_pred HHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHhHhhcCCCC
Confidence 99999988888888876542 1223456777888888888876666666643
No 5
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=98.85 E-value=1.9e-10 Score=75.11 Aligned_cols=47 Identities=45% Similarity=0.720 Sum_probs=26.5
Q ss_pred HHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 030827 88 MDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQP 138 (171)
Q Consensus 88 ~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~~ 138 (171)
++..+||+++|+++++++ ++||+||++||++|+.|...+ ..|||+..
T Consensus 1 ~e~a~EIqealsr~~g~~-diDEdEL~aELe~LeqE~~~~---~~~syL~~ 47 (57)
T 2lxm_B 1 MEDANEINEALSRSYGTP-ELDEDDLEAELDALGDELLAD---EDSSYLDE 47 (57)
T ss_dssp ---------------CCC-CCCHHHHHHHHHHHHHHHHHC---SCCHHHHH
T ss_pred CchHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHHHHHhhc---ccchHHHH
Confidence 467899999999999887 799999999999999987643 57888743
No 6
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=98.79 E-value=5.8e-09 Score=72.57 Aligned_cols=39 Identities=26% Similarity=0.220 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 8 EAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASE 46 (171)
Q Consensus 8 ~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE 46 (171)
.++|.+|+.||||||+||++|++++++++||++++++||
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456889999999999999999999999999999999985
No 7
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=98.54 E-value=1.4e-07 Score=63.63 Aligned_cols=34 Identities=47% Similarity=0.806 Sum_probs=26.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 030827 100 RSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQ 137 (171)
Q Consensus 100 ~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~ 137 (171)
++++++ ++||+||++||++|..|+..+. +|||+.
T Consensus 1 rsy~~p-diDE~eL~aELdaL~~e~~~~~---~pSyL~ 34 (69)
T 3uly_B 1 RSYGTP-ELDEDDLEAELDALGDELLADE---DSSYLD 34 (69)
T ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHhccc---Ccchhh
Confidence 356776 6999999999999999987543 466663
No 8
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=86.42 E-value=0.15 Score=39.39 Aligned_cols=6 Identities=67% Similarity=0.816 Sum_probs=0.0
Q ss_pred CCCCCC
Q 030827 150 LPTAPS 155 (171)
Q Consensus 150 lp~~p~ 155 (171)
||++|+
T Consensus 173 l~~~P~ 178 (179)
T 2gd5_A 173 LGKAPS 178 (179)
T ss_dssp ------
T ss_pred cccCCC
Confidence 455554
No 9
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=73.15 E-value=11 Score=29.53 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhHH-HHHHHhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 030827 79 NLQDEMMDLMDVSH-EIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (171)
Q Consensus 79 ~lmdei~E~~e~~~-EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~ 124 (171)
+++.++-+....++ -|..+++.. .|++++..||=.+-.++
T Consensus 107 Ell~eL~~~Ck~~qp~i~~Li~e~------~ddee~L~elL~~ND~L 147 (186)
T 1oxz_A 107 DLMKELYQRCERMRPTLFRLASDT------EDNDEALAEILQANDNL 147 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHHHHHHHhhHHH
Confidence 57777766655544 455555542 35566666665555443
No 10
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=68.13 E-value=6.1 Score=30.12 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhHH-HHHHHhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 030827 79 NLQDEMMDLMDVSH-EIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (171)
Q Consensus 79 ~lmdei~E~~e~~~-EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~ 124 (171)
+++.++-+....+. -|..+++.. .|++++..||=.+-.++
T Consensus 91 Ell~eL~~~Ck~~qp~i~~Li~e~------~ddee~L~elL~~ND~L 131 (158)
T 1naf_A 91 DLMKELYQRCERMRPTLFRLASDT------EDNDEALAEILQANDNL 131 (158)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHHC------CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHHHHHHHhhHHH
Confidence 56666666555544 455555542 35556666665555443
No 11
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=59.23 E-value=95 Score=27.83 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCC
Q 030827 35 TFNLDQVAFASEGIKDAQQTMTALKS--------ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPD 106 (171)
Q Consensus 35 l~nLe~~~~~IE~a~~n~~v~~alk~--------g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~ 106 (171)
+.++..++.-|.++....++...|.. +...|.--...+.-.+++++..+..+.....+++..+|+....
T Consensus 406 ~~~id~vI~iIr~s~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~--- 482 (514)
T 2inr_A 406 LSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDA--- 482 (514)
T ss_dssp HHSHHHHHHHHHHCCSHHHHHHHHHTTSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---
Confidence 44566666666655555555444432 2223332234577788999999999999999999999986311
Q ss_pred CCCHHHHHHHHHHHHHhhcc
Q 030827 107 DIDEDELMGELDALEADMGM 126 (171)
Q Consensus 107 ~~DedELe~EL~~Le~E~~~ 126 (171)
=.+=+-+||.++......
T Consensus 483 --~~~~i~~el~~i~~~yg~ 500 (514)
T 2inr_A 483 --LLNVIKEELNEIKKKFKS 500 (514)
T ss_dssp --HHHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHHHcCC
Confidence 124567888888877654
No 12
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.20 E-value=1e+02 Score=27.37 Aligned_cols=46 Identities=7% Similarity=-0.067 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 9 AIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQT 54 (171)
Q Consensus 9 g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v 54 (171)
|+...-...|++|..-...++++...-..-.+++..++..+.....
T Consensus 13 ~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~ 58 (485)
T 3qne_A 13 GDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNS 58 (485)
T ss_dssp CCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777888887643233555555555555556666655555543
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=56.10 E-value=46 Score=22.81 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 030827 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDL 87 (171)
Q Consensus 22 K~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~ 87 (171)
.+++.-++.....+..|++.+..++..-.+...++++..+...||-.-..+++..+.++--.+.+.
T Consensus 6 el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~ 71 (113)
T 2lch_A 6 EYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNL 71 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHH
Confidence 456667778888889999999999887778888888888899999887778888888876666444
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=55.80 E-value=57 Score=23.82 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 030827 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMD 86 (171)
Q Consensus 22 K~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E 86 (171)
.+++--++.....+..|+..+..++..-.+.+.++++--+...||---.-++++.|.++--.+.+
T Consensus 11 ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ 75 (144)
T 3kyj_A 11 EIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCED 75 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHH
Confidence 45667788888899999999999998777888888888888888877666666655554444433
No 15
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=54.79 E-value=14 Score=24.38 Aligned_cols=11 Identities=36% Similarity=0.776 Sum_probs=9.4
Q ss_pred cccCCCCCCCC
Q 030827 146 AELNLPTAPSG 156 (171)
Q Consensus 146 ~~~~lp~~p~~ 156 (171)
.+||||+||++
T Consensus 59 DEfGLP~iPa~ 69 (69)
T 3uly_B 59 DEFGLPQIPAS 69 (69)
T ss_pred CccCcccCCCC
Confidence 39999999974
No 16
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=54.18 E-value=31 Score=24.34 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=7.7
Q ss_pred cCCCCCCCCCCC
Q 030827 128 DEAGVPSYLQPD 139 (171)
Q Consensus 128 ~~~~~p~~~~~~ 139 (171)
.+|+||+...|+
T Consensus 70 ~LP~vP~~~lp~ 81 (104)
T 3um3_B 70 PLPNVPSIALPS 81 (104)
T ss_pred CCCCCCCCcCCC
Confidence 358888765554
No 17
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.48 E-value=1.1e+02 Score=26.42 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHh
Q 030827 76 DIDNLQDEMMDLMDVSHEIQETL 98 (171)
Q Consensus 76 ~Ve~lmdei~E~~e~~~EI~eaL 98 (171)
++.-|...|+++.-++.-+.-.+
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555554444
No 18
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=51.24 E-value=38 Score=23.60 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChhHHHHHHHHHHHHHHhH-HHHHHHhccCCCCCCCCCHHHHH
Q 030827 37 NLDQVAFASEGIKDAQQTMTALKSANKELKGMMKT-VKIQDIDNLQDEMMDLMDVS-HEIQETLGRSYNVPDDIDEDELM 114 (171)
Q Consensus 37 nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~-~~id~Ve~lmdei~E~~e~~-~EI~eaLs~~~~~~~~~DedELe 114 (171)
.+.+....|+.++.+..++.-|=. ....+ -+..+ .+++.++-+....+ .-|..+++. .+++++.
T Consensus 7 q~~k~~~el~~v~~n~~lL~EML~------~~~p~~~~~~~-~el~~eL~~~c~~~qp~i~~li~~-------~~dee~l 72 (103)
T 1wrd_A 7 QIGKLRSELEMVSGNVRVMSEMLT------ELVPTQAEPAD-LELLQELNRTCRAMQQRVLELIPQ-------IANEQLT 72 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH------HSCTTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH-------CCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hcCCCCCCccc-HHHHHHHHHHHHHHHHHHHHHHhc-------cCCHHHH
Confidence 345566667766666666654422 22221 11122 35666666655544 345666653 2455666
Q ss_pred HHHHHHHHhh
Q 030827 115 GELDALEADM 124 (171)
Q Consensus 115 ~EL~~Le~E~ 124 (171)
.+|=.+-.++
T Consensus 73 ~~lL~~ND~L 82 (103)
T 1wrd_A 73 EELLIVNDNL 82 (103)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhHHH
Confidence 6665555443
No 19
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=49.45 E-value=7.9 Score=30.94 Aligned_cols=39 Identities=5% Similarity=-0.144 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60 (171)
Q Consensus 22 K~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~ 60 (171)
|.|=++|-+...+..++-.+..+|++.........++..
T Consensus 57 rilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~ 95 (218)
T 3frt_A 57 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLR 95 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544444443333
No 20
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=48.57 E-value=58 Score=21.80 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 030827 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLM 88 (171)
Q Consensus 22 K~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~ 88 (171)
.+++.-++.....+..|+..+..++....+...+.++......||-.-..++...+.++--.+.+..
T Consensus 5 ~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l 71 (105)
T 1tqg_A 5 EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENIL 71 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHH
Confidence 4566677778888888888888888776678888888888888888877788888887776665443
No 21
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=46.18 E-value=88 Score=23.17 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 030827 18 LKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQ 81 (171)
Q Consensus 18 LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lm 81 (171)
-+.|+.+-+.|.+..+|+.-| ..+||.-..=.+|+..+.+...+|..+...+=-+.+...+
T Consensus 48 ~~~Kk~ll~RLkRIeGQvrGI---~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ILe~Hl~~CV 108 (136)
T 4adz_A 48 HKQKAEHLKRLRRIEGQIRGL---QRMVDEDVYCIDILTQVSASTKALQSFALQLLEEHLRHCV 108 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666655444 4445677788889999999999999887765334555444
No 22
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=45.00 E-value=83 Score=22.51 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 030827 23 MYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDL 87 (171)
Q Consensus 23 ~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~ 87 (171)
+++.-++.....+..|+..+..++....+...++++..+...||-.-..+++..|-++--.+.+.
T Consensus 5 ll~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~ 69 (139)
T 2ld6_A 5 YLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENI 69 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHH
Confidence 45566777778888888888888876667777788888888888877777877777766655443
No 23
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=44.12 E-value=1.5e+02 Score=26.36 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCC
Q 030827 35 TFNLDQVAFASEGIKDAQQTMTALK--------SANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPD 106 (171)
Q Consensus 35 l~nLe~~~~~IE~a~~n~~v~~alk--------~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~ 106 (171)
+.++..++.-|.++....++...|. ++...|.--...+.-.+++++..+..+.....+++..+|+....
T Consensus 382 ~~~id~vI~iIr~s~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLt~~e~~kl~~E~~~l~~~i~~l~~iL~~~~~--- 458 (496)
T 2nov_A 382 ISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERT--- 458 (496)
T ss_dssp HHSHHHHHHHHTTSSSHHHHHSSCCC-CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTH---
T ss_pred HHHHhhHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---
Confidence 4455555555555554444432221 23333333334677789999999999999999999999987421
Q ss_pred CCCHHHHHHHHHHHHHhhcc
Q 030827 107 DIDEDELMGELDALEADMGM 126 (171)
Q Consensus 107 ~~DedELe~EL~~Le~E~~~ 126 (171)
=-+=+-+||.++......
T Consensus 459 --~~~~i~~el~~i~~~y~~ 476 (496)
T 2nov_A 459 --MYNLMKKELREVKKKFAT 476 (496)
T ss_dssp --HHHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHHHhCC
Confidence 135678899999887654
No 24
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=43.15 E-value=11 Score=28.00 Aligned_cols=86 Identities=10% Similarity=0.128 Sum_probs=41.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChh-HHHHHHHHHHHHHHhHH-HHHHHhccC
Q 030827 26 GQRDMLYNQ-TFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKT-VKIQ-DIDNLQDEMMDLMDVSH-EIQETLGRS 101 (171)
Q Consensus 26 k~L~k~~~~-l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~-~~id-~Ve~lmdei~E~~e~~~-EI~eaLs~~ 101 (171)
|.+-..... ...+.+....|+..+.+..+++-| |.....+ -..+ + .+++.++-+....+. -|..+++..
T Consensus 33 K~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EM------L~~~~p~~~~~~~d-~Ell~eL~~~ck~~qp~i~~li~e~ 105 (140)
T 1o3x_A 33 KEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEM------VMSHSQGGAAAGSS-EDLMKELYQRCERMRPTLFRLASDT 105 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTTTSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHhcCCCCCCcccc-HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444443322 244455555566666555555544 3333222 1111 1 257777766655544 355555441
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhh
Q 030827 102 YNVPDDIDEDELMGELDALEADM 124 (171)
Q Consensus 102 ~~~~~~~DedELe~EL~~Le~E~ 124 (171)
.|++++..|+=.+-.++
T Consensus 106 ------~ddee~l~elL~~ND~l 122 (140)
T 1o3x_A 106 ------EDNDEALAEILQANDNL 122 (140)
T ss_dssp ------TTCHHHHHHHHHHHHHH
T ss_pred ------cCCHHHHHHHHHhhHHH
Confidence 35566666665555443
No 25
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=41.79 E-value=61 Score=23.48 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 030827 22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQ 81 (171)
Q Consensus 22 K~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lm 81 (171)
.+++--++.....+..|+..+..++....+...++.+..+...||-.-..+++..+.++-
T Consensus 7 ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~la 66 (146)
T 1i5n_A 7 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETT 66 (146)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHH
Confidence 455666777777788888888777655555666666666666666665555555554444
No 26
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=38.05 E-value=71 Score=24.79 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 030827 23 MYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQ 81 (171)
Q Consensus 23 ~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lm 81 (171)
+++--++.....+.+|++.+..++..-.+.+.++++--+...||---.-++++.|.++-
T Consensus 8 ~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~la 66 (225)
T 2lp4_A 8 FYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETT 66 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHH
Confidence 56667788888889999999998887777888888887777887766555655544433
No 27
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=37.42 E-value=2.2e+02 Score=25.21 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhc
Q 030827 28 RDMLYNQTFNLDQVAFASEGIKDAQQTMTALK--------SANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLG 99 (171)
Q Consensus 28 L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk--------~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs 99 (171)
|+-+.-.+.++..++.-|..+.+..+....|- ++...|.--...+.-.+++++.++..+..+...++.++|+
T Consensus 361 legl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~ 440 (470)
T 3ilw_A 361 LRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILA 440 (470)
T ss_dssp HHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444445666777666766654444443332 2222222223456777788888888888888899999987
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030827 100 RSYNVPDDIDEDELMGELDALEADMG 125 (171)
Q Consensus 100 ~~~~~~~~~DedELe~EL~~Le~E~~ 125 (171)
.... =-.-+-+||.++.....
T Consensus 441 ~~~~-----~~~~i~~el~~i~~~yg 461 (470)
T 3ilw_A 441 KPER-----QRGIVRDELAEIVDRHG 461 (470)
T ss_dssp CHHH-----HHHHHHHHHHHHHHHHC
T ss_pred CHHH-----HHHHHHHHHHHHHHHhC
Confidence 6321 12456778888776654
No 28
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=36.79 E-value=17 Score=21.92 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=13.9
Q ss_pred ChhHHHHHHHHHHHHHHhH
Q 030827 73 KIQDIDNLQDEMMDLMDVS 91 (171)
Q Consensus 73 ~id~Ve~lmdei~E~~e~~ 91 (171)
..+.+++++|+|.+.++..
T Consensus 12 ~~~~~D~lLDeId~vLE~N 30 (44)
T 3m91_B 12 LTEETDDLLDEIDDVLEEN 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 3568888888887776654
No 29
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=34.57 E-value=2.9e+02 Score=25.72 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCC
Q 030827 34 QTFNLDQVAFASEGIKDAQQTMTALKS--------ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVP 105 (171)
Q Consensus 34 ~l~nLe~~~~~IE~a~~n~~v~~alk~--------g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~ 105 (171)
.+.++..++.-|..+..-.++...|.. +...|.--...+.-.+++++..+..+......++..+|+.....
T Consensus 588 a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~lse~Qa~aIL~m~L~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~- 666 (692)
T 2xcs_B 588 ALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVL- 666 (692)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-
T ss_pred HHHhHHHHHHHHHhCCCHHHHHHHHhhccCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-
Confidence 345666666666666555444444433 22222222245666778888888888888888888888763211
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q 030827 106 DDIDEDELMGELDALEADMG 125 (171)
Q Consensus 106 ~~~DedELe~EL~~Le~E~~ 125 (171)
-.-+-+||.++.....
T Consensus 667 ----~~~i~~el~~i~~~yg 682 (692)
T 2xcs_B 667 ----LQLVRDELTEIRDRFG 682 (692)
T ss_dssp ----HHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHHcC
Confidence 1346677877776654
No 30
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=34.14 E-value=57 Score=22.63 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 030827 112 ELMGELDALEA 122 (171)
Q Consensus 112 ELe~EL~~Le~ 122 (171)
.+..+|+.|..
T Consensus 47 ~~~~~l~~l~~ 57 (127)
T 1ez3_A 47 KTKEELEELMS 57 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 31
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=33.08 E-value=1.2e+02 Score=21.94 Aligned_cols=60 Identities=7% Similarity=0.033 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ChhHHHHHHHHH
Q 030827 25 EGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV--KIQDIDNLQDEM 84 (171)
Q Consensus 25 Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~--~id~Ve~lmdei 84 (171)
+..|.+...+..++..-+..|.....++-.=+.|..-.+-++++.+.+ .|-.-+.++|.+
T Consensus 40 ~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 40 RQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777665443332233333333333333322 233444455544
No 32
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=31.40 E-value=36 Score=23.66 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.5
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHh
Q 030827 64 ELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETL 98 (171)
Q Consensus 64 aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaL 98 (171)
-|++..+++|.+.|+.+++++.+..-+.+-|-..+
T Consensus 11 eLrkfKgkvd~~~v~~IL~eiE~~~rksnni~tS~ 45 (99)
T 2kjg_A 11 KLRQFKGKVNFNLVMQILDEIELDLRGSDNIKTSI 45 (99)
T ss_dssp HHHHHTCCSCHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 36677778999999999999999988877666544
No 33
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=30.97 E-value=1.6e+02 Score=21.77 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccC
Q 030827 27 QRDMLYNQTFNLDQVAFASEGIKDAQ-----QTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRS 101 (171)
Q Consensus 27 ~L~k~~~~l~nLe~~~~~IE~a~~n~-----~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~ 101 (171)
.|+.-...+.|.+.+...+..+..-. .++..+..+...|..+. .++. .+..+.+.+.+.....+++..-|+..
T Consensus 36 eLe~e~~rL~nae~l~~~~~~a~~~L~~~e~~~~~~L~~a~~~L~~l~-~~d~-~l~~~~e~l~~a~~~l~d~~~~L~~y 113 (175)
T 4abx_A 36 GLNTELSRLSNLHTIAQAAAGGVELLSDGDLNAAGLIGEAVRALNAGA-KYDE-TVMQLQNELRAALESVQAIAGELRDV 113 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH-TTCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHH-HhCh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666554322 35566666666666542 3332 47777777777777777777777653
Q ss_pred CCCCCCCCHH
Q 030827 102 YNVPDDIDED 111 (171)
Q Consensus 102 ~~~~~~~Ded 111 (171)
... -++|..
T Consensus 114 ~~~-le~DP~ 122 (175)
T 4abx_A 114 AEG-SAADPE 122 (175)
T ss_dssp HHT-CCCCHH
T ss_pred HHc-CCCCHH
Confidence 321 235654
No 34
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=29.84 E-value=2.1e+02 Score=23.30 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhc-cCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHH
Q 030827 56 TALKSANKELKGMMK-TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121 (171)
Q Consensus 56 ~alk~g~~aLK~~~~-~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le 121 (171)
-||-.+.++.++..+ +++-+++..+++.+.|.+ .|+.+++.... .|.+.+++||-.|.
T Consensus 142 PaL~~A~kiq~raa~vGfdw~~~~~v~~Kl~EEl---~El~eal~~~~-----~~~~~ieeElGDlL 200 (265)
T 3cra_A 142 PALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEI---DEVMYEARQAV-----VDQAKLEEEMGDLL 200 (265)
T ss_dssp CHHHHHHHHHHHHHTTTCSCSSHHHHHHHHHHHH---HHHHHHHHSSS-----CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH---HHHHHHHHhcc-----CCHHHHHHHHHHHH
Confidence 356667777777655 688888888888886655 44555554321 24556666666554
No 35
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=29.23 E-value=75 Score=23.68 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 030827 112 ELMGELDALE 121 (171)
Q Consensus 112 ELe~EL~~Le 121 (171)
++..+++.|.
T Consensus 46 ~~~~~i~~l~ 55 (196)
T 1fio_A 46 HLRHSLDNFV 55 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 36
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=25.72 E-value=2e+02 Score=21.03 Aligned_cols=11 Identities=27% Similarity=0.145 Sum_probs=4.0
Q ss_pred HHhHHHHHHHh
Q 030827 88 MDVSHEIQETL 98 (171)
Q Consensus 88 ~e~~~EI~eaL 98 (171)
+.....|.+.+
T Consensus 82 l~~np~V~~y~ 92 (151)
T 2pih_A 82 LEEIPVIQEFR 92 (151)
T ss_dssp HHHSHHHHHHH
T ss_pred HHcCHHHHHHH
Confidence 33333333333
No 37
>1wlp_A Cytochrome B-245 light chain; SH3 domain, polyproline, oxidoreductase/signaling protein complex; NMR {Homo sapiens}
Probab=24.69 E-value=22 Score=19.05 Aligned_cols=15 Identities=33% Similarity=0.373 Sum_probs=10.5
Q ss_pred CCCCCCCCCCccccc
Q 030827 156 GHASAQHDRPQASIR 170 (171)
Q Consensus 156 ~~~~~~~~~~~~~~~ 170 (171)
++++.|++||.++.|
T Consensus 7 qpP~nPPPRpPae~r 21 (26)
T 1wlp_A 7 QPPSNPPPRPPAEAR 21 (26)
T ss_dssp CCCSSCCCCCCHHHH
T ss_pred CCCCCcCCCCchHHc
Confidence 356678888877654
No 38
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=23.53 E-value=2.2e+02 Score=20.77 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 36 FNLDQVAFASEGIKDAQQTMTALKSANKELKG 67 (171)
Q Consensus 36 ~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~ 67 (171)
.++......+..+-.+.+.|.+|+.+-.+++.
T Consensus 7 ~~I~d~A~eL~~aI~eseeyk~yk~A~~~i~~ 38 (151)
T 2pih_A 7 KDIVQQARNLAKMISETEEVDFFKRAEAQINE 38 (151)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHC
Confidence 45555556666666666777777777766664
No 39
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.47 E-value=3.6e+02 Score=23.30 Aligned_cols=44 Identities=5% Similarity=-0.106 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 10 IKARAMRVLKQKRM-Y-EGQRDMLYNQTFNLDQVAFASEGIKDAQQ 53 (171)
Q Consensus 10 ~K~~Al~~LkrKK~-~-Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~ 53 (171)
+.......|++|.. - ...++.+...-..-.+++..++..+....
T Consensus 10 n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n 55 (455)
T 2dq0_A 10 NPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERN 55 (455)
T ss_dssp CHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777664 1 12345555555555555555655555444
No 40
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=22.95 E-value=1.1e+02 Score=22.60 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHh
Q 030827 75 QDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEAD 123 (171)
Q Consensus 75 d~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E 123 (171)
+.|+.+-.+|.......++|...-...++.+ -++..+..+|+.|..+
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~--~~~~~~k~~le~l~~~ 89 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAVKKKHSDILSAP--QTDDQMKEELEELMTD 89 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHH
Confidence 3444444444444444455554433333221 2344566666666644
No 41
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=22.28 E-value=54 Score=18.63 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHH
Q 030827 74 IQDIDNLQDEMMD 86 (171)
Q Consensus 74 id~Ve~lmdei~E 86 (171)
.++|+++|||++.
T Consensus 13 ~nDvq~Ll~DVEN 25 (36)
T 3oiq_B 13 ANDVQDLLDDVEN 25 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhhc
Confidence 4678888888753
No 42
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=22.18 E-value=3.7e+02 Score=22.93 Aligned_cols=41 Identities=7% Similarity=-0.029 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827 10 IKARAMRVLKQKRMY-EGQRDMLYNQTFNLDQVAFASEGIKD 50 (171)
Q Consensus 10 ~K~~Al~~LkrKK~~-Ek~L~k~~~~l~nLe~~~~~IE~a~~ 50 (171)
+.......|++|..- ...++.+...-..-.+++..++..+.
T Consensus 10 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~ 51 (425)
T 2dq3_A 10 KPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRS 51 (425)
T ss_dssp CHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556665542 12234443333334444444444333
No 43
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=21.59 E-value=3.5e+02 Score=22.44 Aligned_cols=42 Identities=31% Similarity=0.322 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 030827 81 QDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADM 124 (171)
Q Consensus 81 mdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~ 124 (171)
+.++.+.+...+.-==.+..+. + .|.+-|.|.+||.+|+.+-
T Consensus 10 ~~~L~~~l~~~~~~YY~~d~p~-I-sD~eYD~L~~eL~~lE~~~ 51 (318)
T 1b04_A 10 AAELRELLNRYGYEYYVLDRPS-V-PDAEYDRLMQELIAIEEQY 51 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCC-S-SCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCCC-C-CHHHHHHHHHHHHHHHHhC
Confidence 3444444444443222234443 2 3566788999999999764
No 44
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=20.69 E-value=2e+02 Score=19.22 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHH
Q 030827 20 QKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDE 83 (171)
Q Consensus 20 rKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmde 83 (171)
.|..+++++..+.+....|++-+.+-|. .+++.++--.+----|.+|...=+.+.|..++++
T Consensus 6 ~k~~Le~~~~e~k~kv~~LQ~eLdtsE~--VQrDFVkLSQsLQvqLE~IRqadt~~qvr~Il~e 67 (79)
T 1tu3_F 6 AKATVEQLMFEEKNKAQRLQTELDVSEQ--VQRDFVKLSQTLQVQLERIRQADSLERIRAILND 67 (79)
T ss_dssp ---------------CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHcc
Confidence 4566677777777776777766666663 3444544333333346666666667777777765
No 45
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=20.45 E-value=5.2e+02 Score=24.05 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=38.8
Q ss_pred ccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030827 70 KTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME 127 (171)
Q Consensus 70 ~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e 127 (171)
..+.--+++++..+..+..+...+..++|+.... =-.-+-+||.++......+
T Consensus 397 ~rLt~le~~kl~~E~~eL~~~i~~l~~iL~~~~~-----l~~~i~~EL~~i~~kygd~ 449 (716)
T 1zvu_A 397 RHLAKLEEMKIRGEQSELEKERDQLQGILASERK-----MNNLLKKELQADAQAYGDD 449 (716)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHHHHCCC
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHHHHHHhCCC
Confidence 4455567888888999999999999999987421 1245778888888776643
No 46
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=20.31 E-value=1.6e+02 Score=20.03 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccC
Q 030827 26 GQRDMLYNQTFNLDQVAFASEGIK-DAQQTMTALKSANKELKGMMKTV 72 (171)
Q Consensus 26 k~L~k~~~~l~nLe~~~~~IE~a~-~n~~v~~alk~g~~aLK~~~~~~ 72 (171)
+.|.+..+|+ ..+...||.-. .=.+|+..+.+...||..+...+
T Consensus 18 ~RLkRieGQv---~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~~i 62 (94)
T 3aai_A 18 RRLLSAKGHL---EGILRMLEDEKVYCVDVLKQLKAVEGALDRVGEMV 62 (94)
T ss_dssp HHHHHHHHHH---HHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 34444556666 77889999999999998876554
Done!