BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030828
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 207 bits (526), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 144/172 (83%), Gaps = 3/172 (1%)
Query: 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
MQAQKEAP D+QCKDKFLLQ V + G T KD+ EMF+KEAGH VEE KLRV+YV+PP+
Sbjct: 70 MQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPPR 129
Query: 61 PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
PPSPV EGSEEGSSPR SVSDNG N+++F AA R +R++ QD S+EARAL++KL +E
Sbjct: 130 PPSPVREGSEEGSSPRASVSDNG--NASDFTAAPRFSADRVDAQDNSSEARALVTKLTEE 187
Query: 121 KNNAVQQNNKLRQDLELLRREGKKNR-GGVSFIFVILVGLVGIVLGYVMKKS 171
KN+AVQ NN+L+Q+L+ LRRE K+++ GG+ F++V+LVGL+G++LGY+MK++
Sbjct: 188 KNSAVQLNNRLQQELDQLRRESKRSKSGGIPFMYVLLVGLIGLILGYIMKRT 239
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/172 (61%), Positives = 138/172 (80%), Gaps = 3/172 (1%)
Query: 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
MQAQKEAP DMQCKDKFLLQ V + G TAK++ EMF+KEAGH VEE KLRV YV+PP+
Sbjct: 87 MQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPR 146
Query: 61 PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
PPSPV EGSEEGSSPR SVSDNGH +EF+ + HQ+ ++EARALI+KL +E
Sbjct: 147 PPSPVHEGSEEGSSPRASVSDNGH--GSEFSFERFIVDNKAGHQENTSEARALITKLTEE 204
Query: 121 KNNAVQQNNKLRQDLELLRREGKKNR-GGVSFIFVILVGLVGIVLGYVMKKS 171
K +A+Q NN+L+++L+ LRRE KK++ GG+ F++V+LVGL+G++LGY+MK++
Sbjct: 205 KQSAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLILGYIMKRT 256
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/171 (56%), Positives = 130/171 (76%), Gaps = 5/171 (2%)
Query: 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
MQAQKEAP DMQCKDKFL+Q+V +DGTT+K++ AEMFNKEAG V+E+ KLRV+Y+ P
Sbjct: 72 MQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYI-PAN 130
Query: 61 PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
PPSPVPEGSEEG+SP S++D +++ F +R F E E KS+EA ++ISKL +E
Sbjct: 131 PPSPVPEGSEEGNSPMASLNDIASQSASLFDDVSRTFEETSE---KSSEAWSMISKLTEE 187
Query: 121 KNNAVQQNNKLRQDLELLRRE-GKKNRGGVSFIFVILVGLVGIVLGYVMKK 170
K +A QQ+ KLR +LE+LR+E KK GG S + ++LVGL+G V+GY++ +
Sbjct: 188 KTSATQQSQKLRLELEMLRKETSKKQSGGHSLLLMLLVGLLGCVIGYLLNR 238
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 69/88 (78%)
Query: 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
MQA KEAP DMQC+DK L Q TTAKD+ +EMF+KEAGH EE +L+V+YV+PPQ
Sbjct: 241 MQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMYVTPPQ 300
Query: 61 PPSPVPEGSEEGSSPRGSVSDNGHVNSA 88
PPSPV EG+EEGSSPR SVSDNG+ + A
Sbjct: 301 PPSPVQEGTEEGSSPRASVSDNGNASEA 328
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
MQA KEAP D QCKDK L Q GT K++ +EMF+KEAGH VEE ++IYV+PPQ
Sbjct: 71 MQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYVAPPQ 130
Query: 61 PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDK 106
P SPV EG E+GSSP SVSD G+ S F + + I D+
Sbjct: 131 PQSPVQEGLEDGSSPSASVSDKGNA-SEVFVGPSVGIVDLIRMSDE 175
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 33/171 (19%)
Query: 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
+QAQ+E PPDMQCKDKFLLQS T ++ + F K++G + ECKL+V Y++P
Sbjct: 74 LQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITP-- 131
Query: 61 PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
+ + SS G+ + +G +S+E + I +LK+E
Sbjct: 132 -------STTQRSSESGATNGDG----------------------QSSETISTIQRLKEE 162
Query: 121 KNNAVQQNNKLRQDLELL-RREGKKNRG-GVSFIFVILVGLVGIVLGYVMK 169
++ AV+Q +L+ +LE + RR ++N G G+S +VGL+G+++G+++K
Sbjct: 163 RDAAVKQTQQLQHELETVRRRRNQRNSGNGLSLKLAAMVGLIGLIIGFILK 213
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 44/57 (77%)
Query: 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 57
MQAQKE P DMQ +KF++QSV + G TAK++ EMF+KE+GHVVEE KLRV YV
Sbjct: 71 MQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRVTYVC 127
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
MQA KE PPDM CKDKFL+QS + TT +DI A MF+K G +EE KLRV V
Sbjct: 70 MQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLV---- 125
Query: 61 PPSPVPEGSEEGSSPRGSVSDNG 83
PPS PE S + +G+V ++
Sbjct: 126 PPSDSPELSPINTPKQGAVFEDS 148
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 1 MQAQKEAP-PDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA---GHVVEECKLRVIYV 56
+QA KE P PD +C+DKFL+QS+ D T+ N F E G + + K+R +Y
Sbjct: 66 LQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVY- 124
Query: 57 SPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSA 88
S QPP + E S+ VS G N A
Sbjct: 125 STKQPPQSADKQVENTSTSNPPVSVEGSENLA 156
>sp|P78615|FAS2_EMEND Fatty acid synthase subunit alpha OS=Emericella nidulans GN=fasA
PE=3 SV=1
Length = 1858
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 40 KEAG-HVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFT 98
KE G ++E CK V+ VSP VP G + RG++ E+ RA
Sbjct: 465 KELGEQLIENCK-EVLGVSPVYKDVAVPTGPQTTIDARGNI---------EYQEVPRASA 514
Query: 99 ERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141
++EH K IS E +N + N LR +L+RR+
Sbjct: 515 RKLEHYVKQMAEGGPIS----EYSNRAKVQNDLRSVYKLIRRQ 553
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 6 EAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY 55
E P +C+DKFL+QS + DI A+++ + + + E K+R +Y
Sbjct: 72 EPAPGTKCRDKFLVQSTELKPELQGMDI-ADIWTQVSKANISERKIRCVY 120
>sp|Q8CFA7|KLF17_MOUSE Krueppel-like factor 17 OS=Mus musculus GN=Klf17 PE=1 SV=2
Length = 341
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 60 QPPSPVPEGSEEGSSPRGSVSDNGHVNS---AEFAAAARAFTER---IEHQDKST 108
+PP+P PEG+E S+ RG+ V+ + + +++T+R + HQ K T
Sbjct: 227 EPPTPAPEGAESPSTSRGATRRQSPVSRPYVCTYNSCGKSYTKRSHLVSHQRKHT 281
>sp|O50399|DNAE2_MYCTU Error-prone DNA polymerase OS=Mycobacterium tuberculosis GN=dnaE2
PE=2 SV=4
Length = 1098
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 42 AGHVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERI 101
A + E C + ++P PP VP+G E S R V +A RA+++ I
Sbjct: 325 AAELGERCAFGLQLIAPRLPPFDVPDGHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-I 383
Query: 102 EHQDK 106
EH+ K
Sbjct: 384 EHELK 388
>sp|Q7TWL9|DNAE2_MYCBO Error-prone DNA polymerase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=dnaE2 PE=3 SV=2
Length = 1091
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 42 AGHVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERI 101
A + E C + ++P PP VP+G E S R V +A RA+++ I
Sbjct: 318 AAELGERCAFGLQLIAPRLPPFDVPDGHTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-I 376
Query: 102 EHQDK 106
EH+ K
Sbjct: 377 EHELK 381
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 6 EAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPS 63
E P + + KF + S+K T D E+F ++ HV EE +RV+++ P P S
Sbjct: 174 EKPMEQKSGVKFKIMSLKMKVPT---DYMPELFEEQKDHVSEEQVMRVVFLDPENPNS 228
>sp|Q6PI48|SYDM_HUMAN Aspartate--tRNA ligase, mitochondrial OS=Homo sapiens GN=DARS2 PE=1
SV=1
Length = 645
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 66 PEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDEKNNAV 125
P G E P G + V +AE A + I++ K TEA L + D ++ +
Sbjct: 126 PAGQENPKMPTGEIEIK--VKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDLRSFQM 183
Query: 126 QQNNKLRQDLELLRREGKKNRGG 148
Q N +LR + + RE N G
Sbjct: 184 QYNLRLRSQMVMKMREYLCNLHG 206
>sp|Q9SWR3|MMT1_WOLBI Methionine S-methyltransferase OS=Wollastonia biflora GN=MMT1 PE=1
SV=1
Length = 1088
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 92 AAARAFTERIEHQDKSTEARALISKLKDEKNN------AVQQNNKLRQDLELLRREGKKN 145
+A R+ ER+E D TEAR ++ L+ + +N ++ + QD+ L R EG
Sbjct: 27 SALRSLLERLEKPDTRTEARIFLAHLQKKLDNDGASQRCLETYHFQIQDIYLDRNEGTGY 86
Query: 146 RGGVSFIFVIL 156
+ F +++
Sbjct: 87 QNRKKFTMMVI 97
>sp|Q8BIP0|SYDM_MOUSE Aspartate--tRNA ligase, mitochondrial OS=Mus musculus GN=Dars2 PE=2
SV=1
Length = 653
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 66 PEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDEKNNAV 125
P G E P G + V +AE A + I+ K TEA L + D ++ +
Sbjct: 125 PPGQENPKMPTGEIEIK--VKTAELLNACKKLPFEIKDFVKKTEALRLQYRYLDLRSFQM 182
Query: 126 QQNNKLRQDLELLRREGKKNRGG 148
Q N +LR + + RE N G
Sbjct: 183 QYNLRLRSQMVMKMREYLCNLHG 205
>sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmodium falciparum (isolate
3D7) GN=PFB0145c PE=2 SV=1
Length = 1979
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 105 DKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139
D S + L K+++++N ++Q NK +Q++ELLR
Sbjct: 634 DLSNQIDLLTRKMEEKENKMLEQENKYKQEMELLR 668
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,890,516
Number of Sequences: 539616
Number of extensions: 2650250
Number of successful extensions: 11925
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 11850
Number of HSP's gapped (non-prelim): 129
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)