Query 030828
Match_columns 171
No_of_seqs 147 out of 337
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 99.4 1.1E-13 2.3E-18 113.4 3.1 56 1-57 66-122 (242)
2 KOG0439 VAMP-associated protei 98.8 8.9E-09 1.9E-13 84.0 5.7 64 1-66 74-139 (218)
3 PRK10884 SH3 domain-containing 96.4 0.0095 2E-07 49.1 6.2 67 102-168 122-191 (206)
4 PF05957 DUF883: Bacterial pro 94.8 0.35 7.5E-06 34.5 8.6 23 149-171 72-94 (94)
5 PRK10132 hypothetical protein; 93.8 0.7 1.5E-05 34.5 8.6 24 148-171 84-107 (108)
6 PF06005 DUF904: Protein of un 93.5 0.4 8.7E-06 33.3 6.4 37 100-136 6-42 (72)
7 PRK10404 hypothetical protein; 92.0 1.6 3.4E-05 32.1 8.2 23 149-171 79-101 (101)
8 PF00635 Motile_Sperm: MSP (Ma 91.6 0.15 3.2E-06 36.4 2.4 28 14-41 79-107 (109)
9 PF06156 DUF972: Protein of un 91.1 0.83 1.8E-05 34.0 5.9 38 102-139 12-49 (107)
10 COG3074 Uncharacterized protei 89.8 1.3 2.7E-05 30.9 5.5 37 100-136 6-42 (79)
11 PF03302 VSP: Giardia variant- 89.1 0.2 4.4E-06 44.9 1.6 24 147-170 370-394 (397)
12 PRK15422 septal ring assembly 89.0 1.6 3.5E-05 30.9 5.7 37 100-136 6-42 (79)
13 PRK10884 SH3 domain-containing 88.5 1.5 3.3E-05 36.1 6.2 64 102-168 129-195 (206)
14 PRK13169 DNA replication intia 88.4 1.8 3.9E-05 32.4 6.0 38 101-138 18-55 (110)
15 PF11120 DUF2636: Protein of u 88.2 0.38 8.3E-06 32.6 2.0 20 151-170 7-26 (62)
16 PF06005 DUF904: Protein of un 87.4 5 0.00011 27.8 7.3 44 94-137 14-57 (72)
17 TIGR03493 cellullose_BcsF cell 87.1 0.67 1.4E-05 31.3 2.7 21 151-171 7-27 (62)
18 COG4467 Regulator of replicati 85.3 3.3 7.2E-05 31.1 5.9 42 100-141 10-51 (114)
19 PF06156 DUF972: Protein of un 84.6 5.5 0.00012 29.6 6.9 41 100-140 17-57 (107)
20 PF04420 CHD5: CHD5-like prote 84.1 1.8 3.9E-05 34.1 4.3 43 103-145 38-92 (161)
21 PRK15422 septal ring assembly 83.7 4.2 9.1E-05 28.8 5.5 37 100-136 27-63 (79)
22 PRK13169 DNA replication intia 82.6 7.3 0.00016 29.2 6.8 43 100-142 10-52 (110)
23 PF02183 HALZ: Homeobox associ 82.1 7.3 0.00016 24.5 5.7 34 107-140 7-40 (45)
24 COG3074 Uncharacterized protei 81.6 3.8 8.3E-05 28.5 4.5 36 100-135 27-62 (79)
25 PF15188 CCDC-167: Coiled-coil 80.9 5.4 0.00012 28.6 5.3 42 119-165 43-84 (85)
26 PF04977 DivIC: Septum formati 80.3 5.7 0.00012 26.6 5.2 30 102-131 21-50 (80)
27 PRK00888 ftsB cell division pr 80.3 5.3 0.00011 29.4 5.3 34 100-133 29-62 (105)
28 PF13807 GNVR: G-rich domain o 80.3 14 0.00031 25.4 7.3 16 151-166 59-74 (82)
29 COG4575 ElaB Uncharacterized c 80.0 10 0.00022 28.2 6.7 23 149-171 82-104 (104)
30 KOG4343 bZIP transcription fac 79.6 7.4 0.00016 36.7 7.1 32 110-141 307-338 (655)
31 PF02183 HALZ: Homeobox associ 79.0 7.5 0.00016 24.5 5.0 37 99-135 6-42 (45)
32 PF02344 Myc-LZ: Myc leucine z 78.9 8.1 0.00018 22.7 4.6 26 115-140 4-29 (32)
33 PF06072 Herpes_US9: Alphaherp 77.5 2.9 6.3E-05 28.1 2.8 19 152-170 40-58 (60)
34 PF04880 NUDE_C: NUDE protein, 76.3 3.2 6.9E-05 33.3 3.3 39 101-139 3-44 (166)
35 TIGR02449 conserved hypothetic 75.8 14 0.00031 25.1 6.0 37 102-138 4-40 (65)
36 PF01788 PsbJ: PsbJ; InterPro 74.3 5.2 0.00011 24.7 3.1 25 147-171 6-32 (40)
37 PF03908 Sec20: Sec20; InterP 73.5 29 0.00063 24.5 7.7 17 155-171 75-91 (92)
38 KOG0980 Actin-binding protein 73.3 20 0.00044 35.7 8.4 21 35-58 262-282 (980)
39 PF05377 FlaC_arch: Flagella a 72.9 16 0.00035 24.1 5.4 32 108-139 3-34 (55)
40 PF10482 CtIP_N: Tumour-suppre 72.6 8.4 0.00018 29.2 4.6 34 102-135 86-119 (120)
41 smart00340 HALZ homeobox assoc 72.3 14 0.0003 23.2 4.7 29 113-141 6-34 (44)
42 PF12325 TMF_TATA_bd: TATA ele 72.0 15 0.00032 27.8 5.9 35 102-136 20-54 (120)
43 PF04102 SlyX: SlyX; InterPro 71.4 22 0.00047 24.0 6.1 43 100-142 6-48 (69)
44 COG5547 Small integral membran 71.0 4.6 0.0001 27.1 2.6 20 151-170 32-51 (62)
45 PF10779 XhlA: Haemolysin XhlA 70.6 30 0.00065 23.4 8.7 62 102-169 10-71 (71)
46 PTZ00382 Variant-specific surf 70.2 1.5 3.2E-05 31.9 0.1 25 147-171 69-94 (96)
47 TIGR02209 ftsL_broad cell divi 69.5 17 0.00038 24.8 5.5 32 105-136 24-55 (85)
48 COG3763 Uncharacterized protei 68.9 4.2 9.2E-05 28.2 2.1 19 152-170 8-26 (71)
49 PF00170 bZIP_1: bZIP transcri 67.8 28 0.0006 22.8 5.9 34 106-139 27-60 (64)
50 PRK01844 hypothetical protein; 67.5 4.7 0.0001 28.1 2.1 20 151-170 7-26 (72)
51 PRK00523 hypothetical protein; 66.7 5.3 0.00011 27.8 2.2 23 148-170 5-27 (72)
52 smart00338 BRLZ basic region l 66.5 28 0.0006 22.8 5.8 33 107-139 28-60 (65)
53 TIGR03752 conj_TIGR03752 integ 66.0 15 0.00032 34.1 5.6 25 107-131 68-92 (472)
54 PRK00295 hypothetical protein; 65.3 32 0.0007 23.3 6.0 42 100-141 7-48 (68)
55 PRK00736 hypothetical protein; 65.2 33 0.00071 23.3 6.0 42 100-141 7-48 (68)
56 smart00338 BRLZ basic region l 64.3 23 0.0005 23.3 5.0 33 102-134 30-62 (65)
57 COG4467 Regulator of replicati 64.0 30 0.00066 26.0 6.0 48 90-137 7-54 (114)
58 PRK00888 ftsB cell division pr 64.0 20 0.00043 26.3 5.1 35 106-140 28-62 (105)
59 PF00170 bZIP_1: bZIP transcri 63.5 27 0.00059 22.9 5.2 35 100-134 28-62 (64)
60 PF04977 DivIC: Septum formati 63.0 20 0.00044 23.8 4.7 35 104-138 16-50 (80)
61 PRK04325 hypothetical protein; 62.1 39 0.00084 23.3 6.0 42 100-141 11-52 (74)
62 PRK04406 hypothetical protein; 62.0 39 0.00084 23.4 6.0 42 100-141 13-54 (75)
63 PF12777 MT: Microtubule-bindi 61.9 22 0.00048 31.1 5.8 38 100-137 237-274 (344)
64 PF07106 TBPIP: Tat binding pr 61.8 22 0.00047 27.8 5.2 22 101-122 82-103 (169)
65 PF01166 TSC22: TSC-22/dip/bun 61.5 25 0.00055 23.5 4.6 25 107-131 16-40 (59)
66 COG4317 Uncharacterized protei 61.4 7.3 0.00016 28.0 2.2 15 153-167 30-44 (93)
67 KOG4196 bZIP transcription fac 60.6 30 0.00064 26.9 5.6 41 100-140 76-116 (135)
68 PF07716 bZIP_2: Basic region 60.4 35 0.00076 21.7 5.2 28 112-139 25-52 (54)
69 KOG3119 Basic region leucine z 58.5 27 0.00059 29.7 5.7 40 102-141 212-251 (269)
70 PRK02793 phi X174 lysis protei 58.4 50 0.0011 22.6 6.0 42 100-141 10-51 (72)
71 PF06305 DUF1049: Protein of u 58.4 12 0.00027 24.5 2.9 21 149-169 18-39 (68)
72 PF13815 Dzip-like_N: Iguana/D 58.3 25 0.00053 26.1 4.8 38 103-140 78-115 (118)
73 PRK02119 hypothetical protein; 57.9 51 0.0011 22.6 6.0 42 100-141 11-52 (73)
74 PRK09039 hypothetical protein; 57.6 28 0.0006 30.7 5.7 33 102-134 127-159 (343)
75 PF08078 PsaX: PsaX family; I 57.0 18 0.0004 21.8 3.1 19 152-170 18-36 (37)
76 PRK00846 hypothetical protein; 56.7 54 0.0012 23.0 6.0 42 100-141 15-56 (77)
77 PRK14127 cell division protein 55.1 50 0.0011 24.6 5.9 41 101-141 26-66 (109)
78 PF07716 bZIP_2: Basic region 54.9 42 0.00091 21.3 4.9 31 104-134 24-54 (54)
79 PF14197 Cep57_CLD_2: Centroso 54.8 60 0.0013 22.1 5.8 11 129-139 50-60 (69)
80 PF11346 DUF3149: Protein of u 54.3 14 0.0003 23.1 2.3 19 152-170 18-36 (42)
81 PF14197 Cep57_CLD_2: Centroso 54.1 44 0.00096 22.8 5.1 16 114-129 7-22 (69)
82 PF06645 SPC12: Microsomal sig 54.0 13 0.00029 25.7 2.5 18 152-169 15-32 (76)
83 KOG0977 Nuclear envelope prote 54.0 31 0.00068 32.6 5.6 42 100-141 150-191 (546)
84 TIGR00219 mreC rod shape-deter 53.8 42 0.00092 28.7 6.1 37 100-136 68-108 (283)
85 PF11544 Spc42p: Spindle pole 53.5 72 0.0016 22.4 6.1 39 102-140 16-54 (76)
86 PF14235 DUF4337: Domain of un 53.5 70 0.0015 25.2 6.9 26 108-133 69-94 (157)
87 PF08172 CASP_C: CASP C termin 53.0 23 0.0005 30.0 4.3 35 100-134 95-129 (248)
88 PF12768 Rax2: Cortical protei 52.9 11 0.00025 32.3 2.5 23 149-171 236-258 (281)
89 PRK13922 rod shape-determining 52.7 75 0.0016 26.6 7.4 34 107-140 71-107 (276)
90 PF04728 LPP: Lipoprotein leuc 52.1 67 0.0015 21.3 6.1 32 103-134 8-39 (56)
91 TIGR03592 yidC_oxa1_cterm memb 51.7 85 0.0018 24.8 7.2 35 104-141 28-62 (181)
92 KOG3488 Dolichol phosphate-man 51.4 15 0.00032 25.7 2.4 24 148-171 51-75 (81)
93 PF12958 DUF3847: Protein of u 50.6 91 0.002 22.3 6.5 30 107-136 3-32 (86)
94 PRK02565 photosystem II reacti 50.5 3.1 6.8E-05 25.5 -1.0 25 147-171 5-31 (39)
95 PRK13922 rod shape-determining 50.4 53 0.0011 27.5 6.1 38 99-136 70-110 (276)
96 TIGR02449 conserved hypothetic 50.0 74 0.0016 21.6 5.6 37 100-136 16-52 (65)
97 PF08826 DMPK_coil: DMPK coile 49.8 77 0.0017 21.2 6.0 34 106-139 19-52 (61)
98 PRK14750 kdpF potassium-transp 49.1 27 0.00058 20.1 2.8 19 151-169 3-21 (29)
99 PF07798 DUF1640: Protein of u 48.7 58 0.0013 25.7 5.8 15 155-169 161-175 (177)
100 TIGR03142 cytochro_ccmI cytoch 48.7 82 0.0018 23.2 6.3 18 152-169 96-114 (117)
101 KOG4343 bZIP transcription fac 48.6 30 0.00066 32.8 4.6 33 102-134 306-338 (655)
102 PF07407 Seadorna_VP6: Seadorn 48.6 26 0.00055 31.4 4.0 19 102-120 43-61 (420)
103 PF10205 KLRAQ: Predicted coil 48.5 77 0.0017 23.5 5.9 33 100-132 28-60 (102)
104 PF10224 DUF2205: Predicted co 48.4 48 0.001 23.4 4.6 40 100-139 25-64 (80)
105 PF11688 DUF3285: Protein of u 48.0 23 0.00049 22.4 2.6 19 147-165 19-39 (45)
106 PRK09546 zntB zinc transporter 47.9 97 0.0021 26.6 7.5 19 153-171 303-321 (324)
107 PF13815 Dzip-like_N: Iguana/D 47.7 77 0.0017 23.4 6.0 36 100-135 82-117 (118)
108 PF05377 FlaC_arch: Flagella a 47.1 82 0.0018 20.8 5.5 34 101-134 3-36 (55)
109 PF07334 IFP_35_N: Interferon- 47.1 46 0.001 23.4 4.3 27 114-140 2-28 (76)
110 PF13600 DUF4140: N-terminal d 46.2 61 0.0013 23.0 5.1 27 107-133 72-98 (104)
111 PF04999 FtsL: Cell division p 46.2 66 0.0014 22.6 5.2 31 106-136 36-66 (97)
112 COG0598 CorA Mg2+ and Co2+ tra 45.9 1.2E+02 0.0026 26.1 7.8 22 148-170 297-318 (322)
113 PF12718 Tropomyosin_1: Tropom 44.5 80 0.0017 24.3 5.8 40 100-139 16-55 (143)
114 PRK14163 heat shock protein Gr 44.4 1.6E+02 0.0034 24.6 7.8 20 102-121 51-70 (214)
115 PF01166 TSC22: TSC-22/dip/bun 44.0 57 0.0012 21.9 4.2 32 112-143 14-45 (59)
116 PF08826 DMPK_coil: DMPK coile 43.7 70 0.0015 21.4 4.6 31 101-131 28-58 (61)
117 PF04639 Baculo_E56: Baculovir 43.6 16 0.00035 31.9 1.9 24 147-170 276-299 (305)
118 PF04111 APG6: Autophagy prote 43.6 76 0.0016 27.6 6.2 13 155-167 173-185 (314)
119 PF10473 CENP-F_leu_zip: Leuci 43.2 64 0.0014 25.1 5.1 30 102-131 56-85 (140)
120 PF06612 DUF1146: Protein of u 42.9 32 0.00069 21.9 2.8 19 151-169 26-44 (48)
121 PRK09413 IS2 repressor TnpA; R 42.8 73 0.0016 23.5 5.2 31 109-139 75-105 (121)
122 PF10883 DUF2681: Protein of u 42.7 90 0.002 22.4 5.4 35 102-136 20-54 (87)
123 TIGR02894 DNA_bind_RsfA transc 42.2 95 0.0021 24.8 6.0 18 117-134 109-126 (161)
124 PF10498 IFT57: Intra-flagella 41.9 1E+02 0.0022 27.5 6.8 46 104-152 286-331 (359)
125 PRK10803 tol-pal system protei 41.8 67 0.0014 27.2 5.4 30 102-131 58-87 (263)
126 PF12606 RELT: Tumour necrosis 41.7 35 0.00076 22.0 2.8 20 151-170 7-26 (50)
127 PF11857 DUF3377: Domain of un 41.6 27 0.00059 24.4 2.5 22 149-170 34-55 (74)
128 PF10981 DUF2788: Protein of u 41.6 48 0.001 21.7 3.5 27 140-166 19-46 (52)
129 COG4965 TadB Flp pilus assembl 41.5 1.1E+02 0.0025 26.8 6.9 41 122-167 228-268 (309)
130 PF04899 MbeD_MobD: MbeD/MobD 41.2 98 0.0021 21.3 5.2 39 100-138 30-68 (70)
131 COG3455 Type VI protein secret 40.9 24 0.00051 30.3 2.5 22 149-170 220-241 (262)
132 TIGR02209 ftsL_broad cell divi 40.8 1.1E+02 0.0023 20.7 5.5 33 100-132 26-58 (85)
133 PF11365 DUF3166: Protein of u 40.6 1.1E+02 0.0025 22.3 5.7 41 101-141 4-44 (96)
134 KOG0860 Synaptobrevin/VAMP-lik 40.2 1.6E+02 0.0035 22.3 8.3 16 153-168 99-114 (116)
135 TIGR03752 conj_TIGR03752 integ 39.9 71 0.0015 29.7 5.6 22 102-123 70-91 (472)
136 PF01105 EMP24_GP25L: emp24/gp 39.9 8.3 0.00018 29.2 -0.4 23 147-169 157-179 (183)
137 PRK10722 hypothetical protein; 39.8 85 0.0018 26.8 5.6 36 104-139 157-196 (247)
138 KOG4007 Uncharacterized conser 39.5 12 0.00027 31.0 0.6 25 145-169 129-153 (229)
139 COG4026 Uncharacterized protei 39.5 80 0.0017 26.9 5.4 23 100-122 137-159 (290)
140 PRK00720 tatA twin arginine tr 39.4 32 0.00069 24.3 2.6 17 147-163 2-18 (78)
141 PRK14748 kdpF potassium-transp 39.2 46 0.00099 19.1 2.7 16 153-168 5-20 (29)
142 PF12325 TMF_TATA_bd: TATA ele 38.9 1.7E+02 0.0037 22.1 7.8 39 102-140 41-82 (120)
143 TIGR03689 pup_AAA proteasome A 38.9 62 0.0013 30.3 5.1 40 101-140 4-43 (512)
144 PF12709 Kinetocho_Slk19: Cent 38.9 95 0.0021 22.4 5.0 29 111-139 48-76 (87)
145 PF03980 Nnf1: Nnf1 ; InterPr 38.7 71 0.0015 23.0 4.5 30 111-140 79-108 (109)
146 COG2991 Uncharacterized protei 38.5 35 0.00075 23.9 2.6 16 156-171 12-27 (77)
147 PF02096 60KD_IMP: 60Kd inner 38.3 1.8E+02 0.004 22.8 7.3 35 104-141 29-63 (198)
148 PF09753 Use1: Membrane fusion 38.3 2.3E+02 0.005 23.5 8.1 23 147-169 226-248 (251)
149 PF06160 EzrA: Septation ring 38.1 2.2E+02 0.0047 26.8 8.6 65 100-164 388-453 (560)
150 PHA02657 hypothetical protein; 38.0 29 0.00063 25.1 2.2 19 152-170 32-50 (95)
151 TIGR02736 cbb3_Q_epsi cytochro 38.0 36 0.00077 22.6 2.5 17 153-169 5-21 (56)
152 PF10031 DUF2273: Small integr 37.9 45 0.00097 21.5 2.9 19 151-169 32-50 (51)
153 PF04201 TPD52: Tumour protein 37.8 1.2E+02 0.0026 24.3 5.9 35 100-134 31-65 (162)
154 PRK06285 chorismate mutase; Pr 37.8 1.2E+02 0.0027 21.5 5.6 32 101-132 10-41 (96)
155 PF15018 InaF-motif: TRP-inter 37.7 43 0.00093 20.5 2.6 15 151-165 11-25 (38)
156 PF15168 TRIQK: Triple QxxK/R 37.6 91 0.002 22.0 4.6 21 145-165 44-64 (79)
157 PRK03947 prefoldin subunit alp 37.5 1.3E+02 0.0028 22.5 5.9 40 101-140 97-136 (140)
158 PF11027 DUF2615: Protein of u 37.5 51 0.0011 24.4 3.5 23 147-169 51-73 (103)
159 PF01102 Glycophorin_A: Glycop 37.4 26 0.00056 26.7 2.0 17 154-170 74-90 (122)
160 cd00632 Prefoldin_beta Prefold 37.1 1.2E+02 0.0025 21.8 5.4 39 100-138 65-103 (105)
161 PF01920 Prefoldin_2: Prefoldi 37.1 1.1E+02 0.0024 21.3 5.2 35 101-135 65-99 (106)
162 COG3924 Predicted membrane pro 36.6 48 0.001 23.3 3.0 22 147-168 40-64 (80)
163 PF14209 DUF4321: Domain of un 36.6 29 0.00063 22.1 1.8 16 154-169 34-49 (49)
164 PF06679 DUF1180: Protein of u 36.6 27 0.00059 27.9 2.1 19 152-170 97-115 (163)
165 PF14775 NYD-SP28_assoc: Sperm 36.3 91 0.002 20.6 4.3 27 106-132 27-53 (60)
166 PF10473 CENP-F_leu_zip: Leuci 36.1 1.3E+02 0.0029 23.3 5.9 35 106-140 46-80 (140)
167 PF06716 DUF1201: Protein of u 36.0 53 0.0011 21.2 2.9 19 150-168 10-28 (54)
168 PF04859 DUF641: Plant protein 35.9 57 0.0012 25.1 3.7 33 100-132 96-128 (131)
169 PF01763 Herpes_UL6: Herpesvir 35.9 1E+02 0.0022 29.3 6.1 41 101-141 366-406 (557)
170 PRK09400 secE preprotein trans 35.9 47 0.001 22.2 2.9 9 155-163 44-52 (61)
171 PRK13729 conjugal transfer pil 35.9 87 0.0019 29.2 5.5 21 102-122 73-93 (475)
172 PRK09413 IS2 repressor TnpA; R 35.8 82 0.0018 23.2 4.5 29 113-141 72-100 (121)
173 PF04849 HAP1_N: HAP1 N-termin 35.6 72 0.0016 28.0 4.7 35 105-139 206-240 (306)
174 TIGR01242 26Sp45 26S proteasom 35.4 96 0.0021 27.0 5.6 39 102-140 3-41 (364)
175 COG3883 Uncharacterized protei 35.4 1.1E+02 0.0024 26.3 5.8 37 100-136 54-90 (265)
176 PF15035 Rootletin: Ciliary ro 35.3 1E+02 0.0022 24.8 5.3 35 102-136 85-119 (182)
177 KOG3208 SNARE protein GS28 [In 35.2 2.5E+02 0.0054 23.8 7.6 65 103-167 158-230 (231)
178 KOG0977 Nuclear envelope prote 35.2 1.3E+02 0.0028 28.6 6.6 50 104-153 41-90 (546)
179 PF00769 ERM: Ezrin/radixin/mo 35.1 1.2E+02 0.0026 25.4 5.9 40 100-139 77-116 (246)
180 PF15035 Rootletin: Ciliary ro 34.9 1.2E+02 0.0026 24.4 5.6 35 106-140 75-109 (182)
181 PF02038 ATP1G1_PLM_MAT8: ATP1 34.9 43 0.00092 21.7 2.4 14 151-164 19-32 (50)
182 PRK07857 hypothetical protein; 34.9 1.3E+02 0.0029 22.3 5.4 31 101-131 31-61 (106)
183 PF04111 APG6: Autophagy prote 34.6 1.3E+02 0.0027 26.3 6.1 17 152-168 177-193 (314)
184 PRK04561 tatA twin arginine tr 34.5 43 0.00094 23.5 2.6 17 147-163 2-18 (75)
185 PF13544 N_methyl_2: Type IV p 34.4 48 0.001 18.9 2.4 13 145-157 12-24 (31)
186 PF07235 DUF1427: Protein of u 34.3 22 0.00047 25.8 1.1 14 154-167 30-43 (90)
187 KOG3970 Predicted E3 ubiquitin 34.2 35 0.00075 29.1 2.4 19 152-170 254-273 (299)
188 PRK14160 heat shock protein Gr 34.2 1.4E+02 0.003 24.8 6.0 38 103-140 59-96 (211)
189 PF07106 TBPIP: Tat binding pr 34.1 1.5E+02 0.0032 23.0 6.0 19 122-140 119-137 (169)
190 PRK14143 heat shock protein Gr 34.1 1.2E+02 0.0027 25.5 5.8 21 103-123 79-99 (238)
191 KOG4005 Transcription factor X 34.0 1.1E+02 0.0024 26.3 5.4 30 102-131 87-116 (292)
192 PRK09239 chorismate mutase; Pr 33.8 1.6E+02 0.0034 21.5 5.7 27 105-131 10-36 (104)
193 PF13870 DUF4201: Domain of un 33.6 1.5E+02 0.0032 23.2 6.0 39 102-140 95-133 (177)
194 PTZ00454 26S protease regulato 33.5 1.1E+02 0.0023 27.6 5.6 39 102-140 26-64 (398)
195 CHL00108 psbJ photosystem II p 33.3 4 8.6E-05 25.2 -2.4 25 147-171 6-32 (40)
196 PRK02201 putative inner membra 33.2 1.7E+02 0.0037 26.1 6.8 38 104-141 159-199 (357)
197 PRK02958 tatA twin arginine tr 33.1 46 0.001 23.1 2.6 17 147-163 2-18 (73)
198 PRK02898 cobalt transport prot 32.8 27 0.00059 25.8 1.4 20 149-168 71-90 (100)
199 PF08112 ATP-synt_E_2: ATP syn 32.8 1.5E+02 0.0032 19.5 5.4 39 100-141 13-52 (56)
200 PF06698 DUF1192: Protein of u 32.7 99 0.0022 20.6 4.0 23 100-122 23-45 (59)
201 PRK13729 conjugal transfer pil 32.7 1.6E+02 0.0034 27.5 6.6 39 100-138 78-116 (475)
202 COG4711 Predicted membrane pro 32.4 77 0.0017 26.5 4.1 20 149-168 121-140 (217)
203 PF02994 Transposase_22: L1 tr 32.4 1.2E+02 0.0026 27.1 5.7 49 102-150 148-199 (370)
204 PF08317 Spc7: Spc7 kinetochor 32.3 1.4E+02 0.0029 26.0 6.0 29 103-131 214-242 (325)
205 KOG3386 Copper transporter [In 32.3 32 0.0007 27.1 1.9 19 152-170 121-139 (155)
206 PF14012 DUF4229: Protein of u 32.0 42 0.00092 22.8 2.2 22 149-170 30-52 (69)
207 COG2919 Septum formation initi 32.0 1.2E+02 0.0025 22.6 4.8 33 102-134 54-86 (117)
208 PF13600 DUF4140: N-terminal d 32.0 81 0.0018 22.3 3.9 31 101-131 73-103 (104)
209 COG4026 Uncharacterized protei 31.9 1.1E+02 0.0025 26.0 5.1 35 100-134 130-164 (290)
210 TIGR01801 CM_A chorismate muta 31.8 1.7E+02 0.0036 21.3 5.5 30 102-131 8-37 (102)
211 PF08946 Osmo_CC: Osmosensory 31.7 1.1E+02 0.0024 19.5 3.8 27 100-126 14-40 (46)
212 KOG4005 Transcription factor X 31.6 1.2E+02 0.0026 26.1 5.2 40 101-140 93-139 (292)
213 PF10212 TTKRSYEDQ: Predicted 31.5 2.1E+02 0.0044 27.1 7.2 41 100-140 443-483 (518)
214 COG1730 GIM5 Predicted prefold 31.5 1.4E+02 0.0029 23.4 5.2 38 102-139 98-135 (145)
215 PF05781 MRVI1: MRVI1 protein; 31.4 33 0.00071 32.4 2.0 19 152-170 486-504 (538)
216 PF05103 DivIVA: DivIVA protei 31.4 30 0.00065 25.4 1.5 35 102-136 22-56 (131)
217 PF08317 Spc7: Spc7 kinetochor 31.2 1.4E+02 0.0031 25.8 5.9 33 104-136 229-261 (325)
218 PF13942 Lipoprotein_20: YfhG 31.2 1.6E+02 0.0034 24.0 5.6 39 102-140 109-151 (179)
219 PRK05771 V-type ATP synthase s 31.1 1.1E+02 0.0023 29.1 5.5 36 104-139 92-127 (646)
220 PF05542 DUF760: Protein of un 31.1 31 0.00068 24.3 1.5 21 150-170 54-74 (86)
221 PF05434 Tmemb_9: TMEM9; Inte 31.0 21 0.00045 28.2 0.6 23 147-169 52-74 (149)
222 PF05101 VirB3: Type IV secret 31.0 59 0.0013 22.4 2.9 21 147-167 20-40 (89)
223 KOG3156 Uncharacterized membra 30.9 1.6E+02 0.0035 24.7 5.8 39 103-141 99-138 (220)
224 KOG4797 Transcriptional regula 30.8 1.5E+02 0.0032 22.4 5.0 27 114-140 69-95 (123)
225 KOG1962 B-cell receptor-associ 30.6 1.3E+02 0.0028 25.2 5.2 28 104-131 150-177 (216)
226 PRK14161 heat shock protein Gr 30.5 1.5E+02 0.0032 23.9 5.4 20 102-121 30-49 (178)
227 TIGR02532 IV_pilin_GFxxxE prep 30.5 97 0.0021 16.9 3.1 20 147-166 2-22 (26)
228 PF11932 DUF3450: Protein of u 30.4 1.7E+02 0.0036 24.3 6.0 32 100-131 44-75 (251)
229 TIGR01791 CM_archaeal chorisma 30.3 1.8E+02 0.0038 19.8 5.2 31 102-132 3-33 (83)
230 PF10846 DUF2722: Protein of u 30.3 98 0.0021 28.3 4.9 47 109-158 59-108 (416)
231 PF09813 Coiled-coil_56: Coile 29.7 1.4E+02 0.0031 22.0 4.8 16 153-168 52-67 (100)
232 PF01299 Lamp: Lysosome-associ 29.7 39 0.00085 29.0 2.1 11 161-171 287-297 (306)
233 PF15030 DUF4527: Protein of u 29.6 2.5E+02 0.0055 24.2 6.8 21 121-141 46-66 (277)
234 PRK02898 cobalt transport prot 29.6 17 0.00038 26.8 -0.0 23 148-170 66-88 (100)
235 KOG0972 Huntingtin interacting 29.5 1.3E+02 0.0027 26.8 5.2 7 146-152 332-338 (384)
236 PF07926 TPR_MLP1_2: TPR/MLP1/ 29.4 1.9E+02 0.004 21.7 5.6 22 102-123 14-35 (132)
237 TIGR02230 ATPase_gene1 F0F1-AT 29.4 95 0.002 22.8 3.8 14 152-165 75-88 (100)
238 PF12808 Mto2_bdg: Micro-tubul 29.3 1.3E+02 0.0028 19.5 4.0 19 122-140 32-50 (52)
239 PRK04778 septation ring format 29.1 2.8E+02 0.006 26.0 7.8 32 129-160 421-453 (569)
240 PRK14140 heat shock protein Gr 29.1 1.7E+02 0.0036 23.9 5.6 16 103-118 42-57 (191)
241 PF11180 DUF2968: Protein of u 29.1 2.1E+02 0.0045 23.6 6.1 9 124-132 166-174 (192)
242 PF10176 DUF2370: Protein of u 28.9 60 0.0013 27.5 3.0 13 159-171 102-114 (233)
243 TIGR03017 EpsF chain length de 28.7 3.7E+02 0.008 23.8 8.3 15 152-166 398-412 (444)
244 KOG4112 Signal peptidase subun 28.6 65 0.0014 23.7 2.8 20 149-168 27-46 (101)
245 PF07798 DUF1640: Protein of u 28.5 2.9E+02 0.0064 21.7 7.9 18 102-119 77-94 (177)
246 PF12709 Kinetocho_Slk19: Cent 28.3 2.1E+02 0.0046 20.5 5.4 30 104-133 48-77 (87)
247 TIGR02894 DNA_bind_RsfA transc 28.3 1.8E+02 0.004 23.2 5.5 35 102-136 108-142 (161)
248 PF01616 Orbi_NS3: Orbivirus N 28.1 3.4E+02 0.0074 22.3 8.1 10 131-140 79-88 (195)
249 PF11932 DUF3450: Protein of u 28.1 1.8E+02 0.004 24.0 5.9 36 102-137 53-88 (251)
250 PTZ00478 Sec superfamily; Prov 28.1 1.3E+02 0.0028 21.4 4.2 19 151-169 45-67 (81)
251 PF07963 N_methyl: Prokaryotic 28.1 83 0.0018 16.5 2.4 18 147-164 1-19 (20)
252 TIGR02338 gimC_beta prefoldin, 28.0 2.1E+02 0.0045 20.7 5.5 36 101-136 70-105 (110)
253 TIGR01808 CM_M_hiGC-arch monof 28.0 2E+02 0.0043 19.5 5.4 29 110-138 5-33 (74)
254 PF01544 CorA: CorA-like Mg2+ 27.7 2.7E+02 0.0059 22.6 6.8 23 148-170 269-292 (292)
255 PF11772 EpuA: DNA-directed RN 27.6 42 0.00091 21.4 1.5 13 155-167 9-21 (47)
256 PF07297 DPM2: Dolichol phosph 27.6 76 0.0017 22.3 2.9 23 149-171 50-73 (78)
257 PF04201 TPD52: Tumour protein 27.5 1.5E+02 0.0032 23.7 4.9 38 104-141 28-65 (162)
258 PF09991 DUF2232: Predicted me 27.5 64 0.0014 26.5 3.0 21 151-171 61-81 (290)
259 PF13870 DUF4201: Domain of un 27.4 3E+02 0.0065 21.4 6.8 39 100-138 79-117 (177)
260 PF08040 NADH_oxidored: MNLL s 27.4 32 0.00068 23.1 0.9 16 154-170 14-29 (59)
261 PF00038 Filament: Intermediat 27.4 3.2E+02 0.0068 23.0 7.3 35 102-136 213-247 (312)
262 COG5336 Uncharacterized protei 27.3 60 0.0013 24.5 2.5 21 147-167 70-90 (116)
263 TIGR01005 eps_transp_fam exopo 27.2 4.7E+02 0.01 25.1 9.2 14 152-165 432-445 (754)
264 PF04012 PspA_IM30: PspA/IM30 27.2 2.1E+02 0.0046 23.0 6.0 39 100-138 100-138 (221)
265 TIGR00327 secE_euk_arch protei 27.1 82 0.0018 21.1 2.9 10 155-164 40-49 (61)
266 PF05884 ZYG-11_interact: Inte 27.1 4.4E+02 0.0094 23.2 10.0 13 156-168 114-127 (299)
267 PRK07248 hypothetical protein; 27.0 2.2E+02 0.0047 19.7 5.4 32 101-132 4-35 (87)
268 PF12438 DUF3679: Protein of u 26.9 57 0.0012 21.6 2.1 14 152-165 3-16 (56)
269 PF08614 ATG16: Autophagy prot 26.9 2.2E+02 0.0047 22.7 5.9 29 103-131 107-135 (194)
270 PRK10862 SoxR reducing system 26.6 56 0.0012 25.5 2.3 19 152-170 104-122 (154)
271 TIGR00219 mreC rod shape-deter 26.6 1.8E+02 0.0038 24.9 5.6 36 106-141 67-106 (283)
272 COG3879 Uncharacterized protei 26.5 1.9E+02 0.0042 24.7 5.7 42 100-141 59-104 (247)
273 PF05064 Nsp1_C: Nsp1-like C-t 26.5 2.6E+02 0.0056 20.6 5.8 42 100-141 45-86 (116)
274 KOG4196 bZIP transcription fac 26.3 2.5E+02 0.0054 21.8 5.7 21 119-139 81-101 (135)
275 PF04728 LPP: Lipoprotein leuc 26.3 2E+02 0.0043 19.0 6.2 39 100-138 12-50 (56)
276 PF08606 Prp19: Prp19/Pso4-lik 26.1 90 0.002 21.6 3.0 14 111-124 49-62 (70)
277 COG2433 Uncharacterized conser 26.1 1.8E+02 0.004 28.1 6.0 7 22-28 247-253 (652)
278 PF09738 DUF2051: Double stran 26.1 2.8E+02 0.0061 24.2 6.8 22 100-121 114-135 (302)
279 PF06796 NapE: Periplasmic nit 26.0 85 0.0019 20.8 2.8 18 149-166 29-46 (56)
280 PHA02047 phage lambda Rz1-like 26.0 2.7E+02 0.0059 20.5 7.7 59 100-158 36-95 (101)
281 PF08614 ATG16: Autophagy prot 25.9 1.8E+02 0.004 23.1 5.3 32 104-135 122-153 (194)
282 PF13851 GAS: Growth-arrest sp 25.7 2.1E+02 0.0046 23.2 5.7 30 102-131 31-60 (201)
283 PRK14148 heat shock protein Gr 25.6 2.2E+02 0.0049 23.2 5.8 17 103-119 52-68 (195)
284 PRK00145 putative inner membra 25.6 2.8E+02 0.006 22.8 6.4 34 105-141 58-91 (223)
285 KOG0709 CREB/ATF family transc 25.6 1E+02 0.0022 28.7 4.1 22 111-132 271-292 (472)
286 PRK01833 tatA twin arginine tr 25.5 75 0.0016 22.1 2.6 17 147-163 2-18 (74)
287 KOG4360 Uncharacterized coiled 25.3 1.6E+02 0.0035 28.0 5.3 38 100-137 200-237 (596)
288 PF14257 DUF4349: Domain of un 25.2 2.7E+02 0.0058 23.1 6.4 14 12-25 42-55 (262)
289 PF06570 DUF1129: Protein of u 25.2 60 0.0013 26.2 2.3 23 148-170 177-199 (206)
290 PHA02849 putative transmembran 25.0 87 0.0019 22.2 2.8 18 152-169 22-39 (82)
291 PRK14158 heat shock protein Gr 25.0 2.3E+02 0.005 23.1 5.7 10 106-115 48-57 (194)
292 TIGR02327 int_mem_ywzB conserv 24.9 92 0.002 21.3 2.9 17 152-168 34-50 (68)
293 PF14235 DUF4337: Domain of un 24.9 3.4E+02 0.0074 21.3 7.2 37 102-138 70-106 (157)
294 PF06657 Cep57_MT_bd: Centroso 24.9 2.4E+02 0.0052 19.5 5.1 39 100-140 26-64 (79)
295 PRK08126 hypothetical protein; 24.8 1.7E+02 0.0038 26.7 5.5 23 147-169 241-263 (432)
296 KOG3650 Predicted coiled-coil 24.7 1.8E+02 0.0039 21.7 4.5 39 101-139 66-104 (120)
297 PRK14762 membrane protein; Pro 24.6 96 0.0021 17.4 2.3 14 151-164 5-18 (27)
298 PF06810 Phage_GP20: Phage min 24.6 1.7E+02 0.0036 22.9 4.7 34 99-132 28-64 (155)
299 PHA02562 46 endonuclease subun 24.4 2E+02 0.0042 26.3 5.8 29 104-132 336-364 (562)
300 TIGR03024 arch_pef_cterm PEF-C 24.3 85 0.0018 17.6 2.1 14 149-162 4-17 (26)
301 PF02996 Prefoldin: Prefoldin 24.3 2.3E+02 0.005 20.2 5.2 37 102-138 81-117 (120)
302 PF14283 DUF4366: Domain of un 24.1 24 0.00051 29.4 -0.2 19 151-169 163-181 (218)
303 PF09726 Macoilin: Transmembra 24.1 2.8E+02 0.0062 27.0 7.0 38 103-140 543-580 (697)
304 PF13279 4HBT_2: Thioesterase- 24.0 61 0.0013 22.9 2.0 54 12-65 58-113 (121)
305 CHL00186 psaI photosystem I su 24.0 1E+02 0.0022 18.6 2.6 20 149-168 6-27 (36)
306 PF04971 Lysis_S: Lysis protei 23.7 87 0.0019 21.6 2.5 21 150-170 37-57 (68)
307 PHA03255 BDLF3; Provisional 23.5 90 0.0019 25.6 3.0 22 147-168 180-201 (234)
308 PF03962 Mnd1: Mnd1 family; I 23.4 2.8E+02 0.0061 22.3 6.0 18 122-139 106-123 (188)
309 PRK06034 hypothetical protein; 23.3 4.9E+02 0.011 22.5 7.7 33 100-132 11-43 (279)
310 PF09755 DUF2046: Uncharacteri 23.3 2.8E+02 0.006 24.5 6.2 21 115-135 37-57 (310)
311 COG4836 Predicted membrane pro 23.3 1.1E+02 0.0024 21.4 3.0 21 148-168 38-58 (77)
312 cd00890 Prefoldin Prefoldin is 23.2 2.6E+02 0.0056 20.1 5.3 35 102-136 91-125 (129)
313 TIGR01805 CM_mono_grmpos monof 23.1 2.5E+02 0.0054 19.1 5.2 31 102-132 3-33 (81)
314 PF01025 GrpE: GrpE; InterPro 23.1 2.5E+02 0.0055 21.3 5.5 23 102-124 15-37 (165)
315 smart00831 Cation_ATPase_N Cat 23.1 69 0.0015 20.4 1.9 13 153-165 51-63 (64)
316 PF06103 DUF948: Bacterial pro 23.1 2.6E+02 0.0056 19.2 5.4 33 102-134 23-55 (90)
317 PHA03029 hypothetical protein; 23.0 1E+02 0.0022 21.8 2.9 18 152-169 16-33 (92)
318 PF09622 DUF2391: Putative int 23.0 1.3E+02 0.0029 25.8 4.2 20 149-168 171-190 (267)
319 PF05776 Papilloma_E5A: Papill 23.0 1.1E+02 0.0023 21.9 2.9 17 149-165 18-34 (91)
320 KOG4040 NADH:ubiquinone oxidor 23.0 84 0.0018 25.3 2.7 18 148-165 124-141 (186)
321 PF10883 DUF2681: Protein of u 22.9 2.3E+02 0.005 20.3 4.7 25 103-127 28-52 (87)
322 TIGR02972 TMAO_torE trimethyla 22.9 1.1E+02 0.0024 19.5 2.7 18 149-166 21-38 (47)
323 PF06428 Sec2p: GDP/GTP exchan 22.8 1.8E+02 0.004 21.2 4.3 38 99-136 23-61 (100)
324 PF05600 DUF773: Protein of un 22.6 2.5E+02 0.0054 26.3 6.1 37 100-136 455-491 (507)
325 PF13094 CENP-Q: CENP-Q, a CEN 22.6 3E+02 0.0064 21.1 5.8 22 102-123 31-52 (160)
326 PF04678 DUF607: Protein of un 22.5 3.9E+02 0.0085 21.1 8.5 15 104-118 63-77 (180)
327 PF06196 DUF997: Protein of un 22.5 1.1E+02 0.0024 21.5 3.0 8 147-154 40-47 (80)
328 PRK14127 cell division protein 22.4 3.1E+02 0.0068 20.4 5.6 33 104-136 36-68 (109)
329 PF07544 Med9: RNA polymerase 22.4 2.7E+02 0.0059 19.3 6.5 17 101-117 31-47 (83)
330 PF09789 DUF2353: Uncharacteri 22.3 1.7E+02 0.0038 25.8 4.8 39 103-141 70-108 (319)
331 PRK03992 proteasome-activating 22.3 2.2E+02 0.0049 25.2 5.6 38 102-139 12-49 (389)
332 PRK10622 pheA bifunctional cho 22.3 2.2E+02 0.0047 25.6 5.5 32 101-132 8-39 (386)
333 PF02687 FtsX: FtsX-like perme 22.2 2.3E+02 0.005 19.3 4.7 34 133-166 28-63 (121)
334 PF05283 MGC-24: Multi-glycosy 22.2 80 0.0017 25.8 2.5 24 147-170 159-185 (186)
335 PF11859 DUF3379: Protein of u 22.2 3.6E+02 0.0078 22.8 6.5 22 147-168 75-96 (232)
336 PF05546 She9_MDM33: She9 / Md 22.1 2.9E+02 0.0063 23.0 5.8 38 100-137 41-78 (207)
337 PRK06443 chorismate mutase; Va 22.0 2.6E+02 0.0056 22.7 5.3 31 101-131 8-38 (177)
338 PF02419 PsbL: PsbL protein; 22.0 1.3E+02 0.0028 18.2 2.8 17 152-168 19-36 (37)
339 PRK14162 heat shock protein Gr 22.0 2.7E+02 0.0059 22.7 5.6 24 102-125 50-73 (194)
340 PRK14139 heat shock protein Gr 21.9 2.8E+02 0.0061 22.5 5.6 19 103-121 44-62 (185)
341 PRK07033 hypothetical protein; 21.9 2E+02 0.0044 26.2 5.3 22 148-169 227-248 (427)
342 PF10140 YukC: WXG100 protein 21.8 47 0.001 29.7 1.2 22 148-169 196-217 (359)
343 PF04277 OAD_gamma: Oxaloaceta 21.7 88 0.0019 21.0 2.3 13 157-169 22-34 (79)
344 COG5415 Predicted integral mem 21.7 4.9E+02 0.011 22.0 7.1 17 147-163 65-81 (251)
345 PF11690 DUF3287: Protein of u 21.6 3.5E+02 0.0076 20.2 6.5 59 106-164 36-104 (109)
346 PF11293 DUF3094: Protein of u 21.4 1.2E+02 0.0025 20.1 2.7 13 155-167 42-54 (55)
347 TIGR01167 LPXTG_anchor LPXTG-m 21.4 1.4E+02 0.003 16.7 2.8 19 150-169 11-29 (34)
348 PRK01622 OxaA-like protein pre 21.4 3.4E+02 0.0073 22.8 6.3 39 104-142 90-130 (256)
349 PF08138 Sex_peptide: Sex pept 21.3 31 0.00068 22.7 0.0 17 149-165 3-19 (56)
350 PF11902 DUF3422: Protein of u 21.3 4.5E+02 0.0098 24.0 7.4 20 35-54 107-127 (420)
351 PF07889 DUF1664: Protein of u 21.3 3.4E+02 0.0073 20.7 5.6 32 102-133 72-103 (126)
352 PRK02944 OxaA-like protein pre 21.3 2.5E+02 0.0055 23.6 5.5 38 104-141 85-123 (255)
353 TIGR01795 CM_mono_cladeE monof 21.3 3.1E+02 0.0068 19.5 5.5 30 102-131 7-36 (94)
354 PRK10803 tol-pal system protei 21.3 2.6E+02 0.0056 23.6 5.6 38 100-137 63-100 (263)
355 PF11621 Sbi-IV: C3 binding do 21.2 1.8E+02 0.004 19.6 3.7 18 103-120 10-27 (69)
356 KOG4010 Coiled-coil protein TP 21.2 4.3E+02 0.0094 21.8 6.5 35 100-134 46-80 (208)
357 KOG3251 Golgi SNAP receptor co 21.2 4.9E+02 0.011 21.7 7.1 19 151-169 194-212 (213)
358 PF07219 HemY_N: HemY protein 21.1 91 0.002 22.5 2.4 20 149-168 14-33 (108)
359 PRK07075 isochorismate-pyruvat 21.0 3.3E+02 0.0071 19.6 8.3 33 100-132 10-42 (101)
360 TIGR01165 cbiN cobalt transpor 21.0 27 0.00059 25.3 -0.4 22 149-170 67-88 (91)
361 KOG1666 V-SNARE [Intracellular 20.8 2.8E+02 0.0061 23.3 5.5 18 123-140 157-174 (220)
362 PRK14155 heat shock protein Gr 20.7 2.4E+02 0.0052 23.3 5.1 22 102-123 24-45 (208)
363 PRK13673 hypothetical protein; 20.7 2E+02 0.0044 21.7 4.3 35 133-168 77-111 (118)
364 COG3096 MukB Uncharacterized p 20.4 2.8E+02 0.006 28.1 6.0 60 100-159 552-611 (1480)
365 KOG4657 Uncharacterized conser 20.4 2.8E+02 0.0061 23.6 5.4 32 108-139 89-120 (246)
366 PF08232 Striatin: Striatin fa 20.4 3.3E+02 0.0071 20.7 5.5 31 102-132 22-52 (134)
367 PF11382 DUF3186: Protein of u 20.4 1.6E+02 0.0036 25.4 4.3 16 117-132 44-59 (308)
368 PF00662 Oxidored_q1_N: NADH-U 20.4 1E+02 0.0022 19.9 2.4 19 147-165 22-40 (62)
369 PRK01470 tatA twin arginine tr 20.2 1.1E+02 0.0024 19.7 2.4 16 148-163 2-17 (51)
370 PF15294 Leu_zip: Leucine zipp 20.2 3.1E+02 0.0068 23.8 5.9 41 100-140 134-174 (278)
371 PRK14151 heat shock protein Gr 20.2 3E+02 0.0065 22.0 5.4 25 101-125 30-54 (176)
372 PF13073 DUF3937: Protein of u 20.2 1.2E+02 0.0026 20.9 2.6 19 149-167 10-28 (73)
373 COG1422 Predicted membrane pro 20.1 4.1E+02 0.0089 22.0 6.3 25 104-128 71-95 (201)
374 KOG2264 Exostosin EXT1L [Signa 20.1 2.2E+02 0.0047 27.8 5.1 27 100-126 95-121 (907)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.41 E-value=1.1e-13 Score=113.41 Aligned_cols=56 Identities=30% Similarity=0.585 Sum_probs=52.1
Q ss_pred CCCCCCCC-CCCCCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEEEEeC
Q 030828 1 MQAQKEAP-PDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 57 (171)
Q Consensus 1 ~Qa~~e~P-pd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrVv~~~ 57 (171)
||+|+|.| ||+||||||||||+..+......|+ .|+|...++.-|.++||||+|--
T Consensus 66 lq~l~eEpapdfKCrdKFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvyse 122 (242)
T COG5066 66 LQGLTEEPAPDFKCRDKFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYSE 122 (242)
T ss_pred eeccccCCCCCccccceeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEeec
Confidence 69999998 9999999999999999998888899 49999999999999999999983
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=8.9e-09 Score=83.95 Aligned_cols=64 Identities=33% Similarity=0.578 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeeCCCCCccccchhhhcccc--CceeeEEEeEEEEeCCCCCCCCCC
Q 030828 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA--GHVVEECKLRVIYVSPPQPPSPVP 66 (171)
Q Consensus 1 ~Qa~~e~Ppd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~--~~~i~e~KLrVv~~~p~~~~s~~~ 66 (171)
|||.+..|+|++|||||+||++.++.+ +..++ .+.|.-.. +..+.+.|++|+|+.|..+++...
T Consensus 74 ~q~~~~~P~d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~ 139 (218)
T KOG0439|consen 74 HQPFEKSPPDFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVA 139 (218)
T ss_pred eccCccCchhhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCccccc
Confidence 588788899999999999999999987 33344 57776555 899999999999999877765543
No 3
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.39 E-value=0.0095 Score=49.14 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=40.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--ch-HHHHHHHHHHHHHHHHHh
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGG--VS-FIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~~~~~~G--~~-~~~V~~v~ll~~llgy~~ 168 (171)
+++.+++++...|..|++|.+.+.+|...++.|++.++......... +- +++=.+|+++|+|||.++
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 45666666777777777777777777777777666555432211111 12 222366777777788664
No 4
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=94.79 E-value=0.35 Score=34.53 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHHHHHHHhcCC
Q 030828 149 VSFIFVILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~~~~ 171 (171)
=|+.-|.+.+.+|||||+++.|+
T Consensus 72 ~P~~svgiAagvG~llG~Ll~RR 94 (94)
T PF05957_consen 72 NPWQSVGIAAGVGFLLGLLLRRR 94 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCC
Confidence 48888999999999999999875
No 5
>PRK10132 hypothetical protein; Provisional
Probab=93.79 E-value=0.7 Score=34.46 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCC
Q 030828 148 GVSFIFVILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 148 G~~~~~V~~v~ll~~llgy~~~~~ 171 (171)
.=|..-|.+.+-+|||||+++.|+
T Consensus 84 ~~Pw~svgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 84 ERPWCSVGTAAAVGIFIGALLSLR 107 (108)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhcc
Confidence 458888889999999999999875
No 6
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.46 E-value=0.4 Score=33.25 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=26.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
.+.|+.|...|..+|..|+.|...+..+|..|.++-.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~ 42 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENE 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4578888888888888888888887777555544433
No 7
>PRK10404 hypothetical protein; Provisional
Probab=92.02 E-value=1.6 Score=32.13 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHhcCC
Q 030828 149 VSFIFVILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~~~~ 171 (171)
=|..-|.+.+.+|||||+++.|+
T Consensus 79 ~Pw~avGiaagvGlllG~Ll~RR 101 (101)
T PRK10404 79 KPWQGIGVGAAVGLVLGLLLARR 101 (101)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcC
Confidence 57778888888999999999875
No 8
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=91.60 E-value=0.15 Score=36.43 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=17.8
Q ss_pred CceeEEEEEeeCCCCCcc-ccchhhhccc
Q 030828 14 KDKFLLQSVKTNDGTTAK-DINAEMFNKE 41 (171)
Q Consensus 14 kDKFLVQSv~v~~~~~~~-~i~~~~f~k~ 41 (171)
+|||+||++.++++.... .....+|...
T Consensus 79 ~dkf~I~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
T PF00635_consen 79 KDKFLIQSIVVPDNATDPKKDFKQIWKNG 107 (109)
T ss_dssp SEEEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred CCEEEEEEEEcCCCccchhhhHHHHHhcc
Confidence 999999999998775433 2223555543
No 9
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.06 E-value=0.83 Score=34.00 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=19.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.++.++.+..++|..|+.+...++.||..|+-|...||
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555544444444
No 10
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.83 E-value=1.3 Score=30.90 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=27.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
.+.|++|...|..+|.-|+-|...+...|+.|++|..
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 3467788888888888887777777777777765544
No 11
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=89.13 E-value=0.2 Score=44.90 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=20.4
Q ss_pred CCchHHHHHHHH-HHHHHHHHHhcC
Q 030828 147 GGVSFIFVILVG-LVGIVLGYVMKK 170 (171)
Q Consensus 147 ~G~~~~~V~~v~-ll~~llgy~~~~ 170 (171)
.|++|..|++|+ |+|||.+||+.|
T Consensus 370 aGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 370 AGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred eeeeehhHHHHHHHHHHHhhheeec
Confidence 799988776665 999999999987
No 12
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.97 E-value=1.6 Score=30.89 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=27.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
.+.|++|...|..+|.-|+-|+..+..+|..|.+|..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888777777777777766544
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.55 E-value=1.5 Score=36.11 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=32.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCchHHHHHHHHHHHHHHHHHh
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKN---RGGVSFIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~~~~---~~G~~~~~V~~v~ll~~llgy~~ 168 (171)
..+....+.+++-.+|++|+..+..++..|+.+++.+++..... .||. .+++=.|||+||-|+.
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~---v~~~GlllGlilp~l~ 195 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGG---VAGIGLLLGLLLPHLI 195 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH---HHHHHHHHHHHhcccc
Confidence 34444444555555555555555555555555555444432111 1332 2222334888888876
No 14
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=88.36 E-value=1.8 Score=32.41 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=22.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
..+-.++.+.++.+..|-||...+.-||..|++.|..+
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555556666666666666666666666555544
No 15
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=88.20 E-value=0.38 Score=32.56 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 030828 151 FIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~~ 170 (171)
+++|++.++++|.+||++++
T Consensus 7 iQii~l~AlI~~pLGyl~~~ 26 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYLARR 26 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 57889999999999999875
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.41 E-value=5 Score=27.76 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=32.6
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 94 ARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 94 ~~~~~~~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
...+.++..|+-+..+.+..-..|.+++..+.++|++|++|...
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566778888888888888888888888888888877553
No 17
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=87.15 E-value=0.67 Score=31.32 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 030828 151 FIFVILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~~~ 171 (171)
++.|++-+|+.|-+||+++++
T Consensus 7 lQli~lcALIf~pLgyl~~r~ 27 (62)
T TIGR03493 7 LQLVLLCALIFFPLGYLARRS 27 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHhh
Confidence 578888888999999998874
No 18
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=85.34 E-value=3.3 Score=31.06 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=29.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
++.++.++-+.-++|..|+..+.+++.||..|+=|.+.||++
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 345677777777777777777777777777777776666654
No 19
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.64 E-value=5.5 Score=29.57 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=36.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+..+-+++.+.+..+..|-||...+..||..|++.|..+.+
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55788899999999999999999999999999988887654
No 20
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=84.13 E-value=1.8 Score=34.13 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhccCC
Q 030828 103 HQDKSTEARALISKLKDEKNN------------AVQQNNKLRQDLELLRREGKKN 145 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~------------~~~q~~~Lq~El~~lr~~~~~~ 145 (171)
...+..+.+.+|.+|++|+++ +.|+-.++.+|++.+.+.....
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888887763 5666667778888776654333
No 21
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.72 E-value=4.2 Score=28.80 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=28.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
++++|++-..+...+..++..+..+.++|++|++|..
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777778889999887755
No 22
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.63 E-value=7.3 Score=29.15 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=39.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 142 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~ 142 (171)
+..++.++....+++..|+.+...++.||..|+-|-+.||++.
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999888773
No 23
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.15 E-value=7.3 Score=24.52 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
++-.++..-.|+.+-+++.+||+.|+.|+..|+.
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666666667777766666554
No 24
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.61 E-value=3.8 Score=28.54 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=27.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El 135 (171)
+++||+|-.....+.+.++..+..+.++|++|++|-
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788777777777777777777888888887663
No 25
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=80.86 E-value=5.4 Score=28.61 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHH
Q 030828 119 DEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLG 165 (171)
Q Consensus 119 eE~~~~~~q~~~Lq~El~~lr~~~~~~~~G~~~~~V~~v~ll~~llg 165 (171)
+|.+.....-....++|..||+.. +. ++++.++++++.||+.
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkEN-rK----~~~ls~~l~~v~~LvY 84 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKEN-RK----SMLLSVALFFVCFLVY 84 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhh-hh----hHHHHHHHHHHHHHHc
Confidence 444444444444456777888763 22 3455555566666553
No 26
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.33 E-value=5.7 Score=26.63 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
.++.++.+...+|.+|+++...+.++.+.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555555
No 27
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=80.32 E-value=5.3 Score=29.41 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=22.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 133 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~ 133 (171)
+..++.+++++++++.+|+++...+.++.+.|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4456667777777777777766666666666664
No 28
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=80.32 E-value=14 Score=25.38 Aligned_cols=16 Identities=25% Similarity=0.521 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 030828 151 FIFVILVGLVGIVLGY 166 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy 166 (171)
.+++++.+++|+++|.
T Consensus 59 ~lil~l~~~~Gl~lgi 74 (82)
T PF13807_consen 59 ALILALGLFLGLILGI 74 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677777788888773
No 29
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=80.04 E-value=10 Score=28.22 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHHHHHHHHhcCC
Q 030828 149 VSFIFVILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~~~~ 171 (171)
=|-+-|.+-+-+|||||.++.|+
T Consensus 82 ~PWq~VGvaAaVGlllGlLlsRR 104 (104)
T COG4575 82 NPWQGVGVAAAVGLLLGLLLSRR 104 (104)
T ss_pred CCchHHHHHHHHHHHHHHHHhcC
Confidence 46777888899999999998774
No 30
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=79.59 E-value=7.4 Score=36.73 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 110 ARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 110 a~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.++-|.+|-.|...+++||..|++.|+.+...
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 34555556566666666666666666655543
No 31
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.04 E-value=7.5 Score=24.47 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=30.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 99 ERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 99 ~~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El 135 (171)
+++.|+..++...+.-.+|..|...+..|...|+..+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667888888888888888888888888888887654
No 32
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=78.91 E-value=8.1 Score=22.73 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 115 SKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 115 ~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
.+|..|...+++.+++|++.|+.||.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777777889999999999998874
No 33
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=77.50 E-value=2.9 Score=28.09 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 030828 152 IFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~~ 170 (171)
..++++|++|+++|+|+..
T Consensus 40 ~~~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 40 FAVVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445889999999998753
No 34
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=76.27 E-value=3.2 Score=33.29 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=14.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKN---NAVQQNNKLRQDLELLR 139 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~---~~~~q~~~Lq~El~~lr 139 (171)
++++.||..|-..-+=|.+|++ .++.++++|+.|+..|+
T Consensus 3 eD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666555555554442 34455555554444443
No 35
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=75.82 E-value=14 Score=25.14 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=20.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
.+..|+.+....+..|++|...+.++...++.|-..|
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L 40 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQL 40 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665555555555554444433
No 36
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=74.34 E-value=5.2 Score=24.73 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=17.3
Q ss_pred CCchHHHHHHHHHHHHH--HHHHhcCC
Q 030828 147 GGVSFIFVILVGLVGIV--LGYVMKKS 171 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~l--lgy~~~~~ 171 (171)
+-+|+|+|..++=+.++ +|.||+++
T Consensus 6 GRIPLWlVgtv~G~~vi~lvglFfYGs 32 (40)
T PF01788_consen 6 GRIPLWLVGTVAGIAVIGLVGLFFYGS 32 (40)
T ss_dssp TSS-HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CcccchHHHHHHHHHHHHHHHHheecc
Confidence 55999999777655544 88888764
No 37
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=73.55 E-value=29 Score=24.48 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhcCC
Q 030828 155 ILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 155 ~~v~ll~~llgy~~~~~ 171 (171)
+.++++-..++|+++++
T Consensus 75 ~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 75 FAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 33334444466777664
No 38
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=73.33 E-value=20 Score=35.73 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=15.7
Q ss_pred hhhhccccCceeeEEEeEEEEeCC
Q 030828 35 AEMFNKEAGHVVEECKLRVIYVSP 58 (171)
Q Consensus 35 ~~~f~k~~~~~i~e~KLrVv~~~p 58 (171)
|++|. -+.+.+.+=+|||+++
T Consensus 262 Pnf~~---~sdl~~~~~pvv~i~~ 282 (980)
T KOG0980|consen 262 PNFLR---QSDLESYITPVVYIPS 282 (980)
T ss_pred ccccc---ccchhhcCCCceecCC
Confidence 56654 2567888999999965
No 39
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=72.88 E-value=16 Score=24.14 Aligned_cols=32 Identities=13% Similarity=0.328 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 108 TEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 108 ~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
+|.+..+.++.-..+....||+.++.+++.+.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444554445555555555555544443
No 40
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=72.64 E-value=8.4 Score=29.23 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El 135 (171)
++++.....-..|..|+.|++.+..||++|++|+
T Consensus 86 efe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 86 EFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3445555666789999999999999999999886
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=72.28 E-value=14 Score=23.23 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 113 LISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 113 ~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+.-|+.=..++..+|++|+.|+..||..
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555567888999999999999865
No 42
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.96 E-value=15 Score=27.83 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=15.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
.+.+.+.....++..|++++..+.+++..+.+|+.
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv 54 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIV 54 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 43
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=71.41 E-value=22 Score=24.04 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=32.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 142 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~ 142 (171)
+.+|+.+++-...+|..|.+......++...|+.++..|+.+.
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888877777777777778877777653
No 44
>COG5547 Small integral membrane protein [Function unknown]
Probab=70.99 E-value=4.6 Score=27.07 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 030828 151 FIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~~ 170 (171)
-.+|+++|+||+-+||+.+|
T Consensus 32 tilviil~~lGv~iGl~~~r 51 (62)
T COG5547 32 TILVIILILLGVYIGLYKKR 51 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999998775
No 45
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=70.57 E-value=30 Score=23.38 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=28.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~~~~~~G~~~~~V~~v~ll~~llgy~~~ 169 (171)
..+.++.+-...+.+|..-....-.+.+.+.+.++.+..... =++=.++=+++++++|++++
T Consensus 10 ~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k------W~~r~iiGaiI~~i~~~i~K 71 (71)
T PF10779_consen 10 RIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK------WIWRTIIGAIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444433222222222444455554443210 01224555677777777764
No 46
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=70.19 E-value=1.5 Score=31.92 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=17.4
Q ss_pred CCchHHHH-HHHHHHHHHHHHHhcCC
Q 030828 147 GGVSFIFV-ILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 147 ~G~~~~~V-~~v~ll~~llgy~~~~~ 171 (171)
.|+.+-.| ++.+|++||+++|++|+
T Consensus 69 agi~vg~~~~v~~lv~~l~w~f~~r~ 94 (96)
T PTZ00382 69 AGISVAVVAVVGGLVGFLCWWFVCRG 94 (96)
T ss_pred EEEEeehhhHHHHHHHHHhheeEEee
Confidence 56776544 44477889998888763
No 47
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=69.51 E-value=17 Score=24.78 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 105 DKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 105 ~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
.+......++.+++.+...+..+|..|+.|..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554433
No 48
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.86 E-value=4.2 Score=28.19 Aligned_cols=19 Identities=21% Similarity=0.693 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 030828 152 IFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~~ 170 (171)
+++++..|+|+++|||+.+
T Consensus 8 l~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 8 LLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444566777888754
No 49
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=67.79 E-value=28 Score=22.81 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.+.+....+..|+.+...+..++..|+++...|+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554455555555554444443
No 50
>PRK01844 hypothetical protein; Provisional
Probab=67.48 E-value=4.7 Score=28.09 Aligned_cols=20 Identities=15% Similarity=0.559 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 030828 151 FIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~~ 170 (171)
+.++++..++|+++|+|+.|
T Consensus 7 I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777644
No 51
>PRK00523 hypothetical protein; Provisional
Probab=66.67 E-value=5.3 Score=27.83 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=15.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhcC
Q 030828 148 GVSFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 148 G~~~~~V~~v~ll~~llgy~~~~ 170 (171)
|+-+.++++..++|+++|||+-|
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667778888888754
No 52
>smart00338 BRLZ basic region leucin zipper.
Probab=66.54 E-value=28 Score=22.83 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
+.+....+..|+.+...+..+...|+.|+..|+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 53
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.99 E-value=15 Score=34.15 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
+.+.+.++.+|..+...++.||++|
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433444444444
No 54
>PRK00295 hypothetical protein; Provisional
Probab=65.33 E-value=32 Score=23.28 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=28.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.+|+.+++-...+|..|.+......++...|+.++..|+++
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888776666666666666666665543
No 55
>PRK00736 hypothetical protein; Provisional
Probab=65.21 E-value=33 Score=23.26 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=30.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.+|+.+++-...+|..|.+......++...|+.++..|..+
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888877666666667777777766543
No 56
>smart00338 BRLZ basic region leucin zipper.
Probab=64.33 E-value=23 Score=23.25 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=16.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
+|+.+.....++...|..+.+.+..++..|+++
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544443
No 57
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=64.03 E-value=30 Score=25.99 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=37.8
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 90 FAAAARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 90 ~~~~~~~~~~~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
|+++.+--..+..+-.++...++.+..|-||...+.-||.+|++.|..
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 444443333466788889999999999999999999999999987664
No 58
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=64.02 E-value=20 Score=26.31 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
.+.+.++++..+++|+..+.++|+.|+.|+..|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 67888888999999888899999999988887764
No 59
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=63.45 E-value=27 Score=22.86 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=20.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
+..|+.++.+.......|+.++..+..++..|..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666666666666666666666666655544
No 60
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=62.96 E-value=20 Score=23.84 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
-..+.....+|..|+.+++.+..+|..|++++..|
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788889999999999999999998888876
No 61
>PRK04325 hypothetical protein; Provisional
Probab=62.07 E-value=39 Score=23.27 Aligned_cols=42 Identities=21% Similarity=0.167 Sum_probs=31.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.+|+.+++=...+|..|.+.+....++...|+.++..|..+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888887776666667777777766544
No 62
>PRK04406 hypothetical protein; Provisional
Probab=61.97 E-value=39 Score=23.41 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=32.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.+|+.+++=...+|..|.+......++...|+.++..|+++
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888887777777777777777776554
No 63
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.90 E-value=22 Score=31.11 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=26.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
+.+.+.++.+..+.+..|+.+.+...++.+.|+++...
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777777777777778878766553
No 64
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.79 E-value=22 Score=27.79 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=12.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKN 122 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~ 122 (171)
.++++++.+....+..|+.|++
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666665555554
No 65
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=61.53 E-value=25 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
.+-.+.+|+.|.+..+.+..||..|
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555444444444433
No 66
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.40 E-value=7.3 Score=27.98 Aligned_cols=15 Identities=47% Similarity=0.809 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q 030828 153 FVILVGLVGIVLGYV 167 (171)
Q Consensus 153 ~V~~v~ll~~llgy~ 167 (171)
.+++++|+||++||=
T Consensus 30 ~iAlvGllGilvGeq 44 (93)
T COG4317 30 AIALVGLLGILVGEQ 44 (93)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456999999999974
No 67
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=60.63 E-value=30 Score=26.85 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=30.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
-.+|+.+-.+...+|.+|.+|.+.+.+|+..++...+.|..
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677777788888888888888888877777766665543
No 68
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=60.42 E-value=35 Score=21.68 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 112 ALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 112 a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
..+..|..+...+..+|..|++++..|+
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555556666666666665554
No 69
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=58.54 E-value=27 Score=29.73 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=34.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.-+.+..|....|.-|..|...+++++.+|++|+..+|+.
T Consensus 212 ~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 212 KRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888888999999999999999999999988875
No 70
>PRK02793 phi X174 lysis protein; Provisional
Probab=58.45 E-value=50 Score=22.61 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=30.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.+|+.+++=....|..|.+......++...|+.++..|..+
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEK 51 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888888888777666666667777777766544
No 71
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=58.44 E-value=12 Score=24.47 Aligned_cols=21 Identities=19% Similarity=0.721 Sum_probs=14.1
Q ss_pred chH-HHHHHHHHHHHHHHHHhc
Q 030828 149 VSF-IFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 149 ~~~-~~V~~v~ll~~llgy~~~ 169 (171)
.|+ ..+++.+++|+++|+++.
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLS 39 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 564 445566678888887763
No 72
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=58.31 E-value=25 Score=26.11 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=17.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
|...+......+..+.++...+.+..+++.+++..+++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444455555544
No 73
>PRK02119 hypothetical protein; Provisional
Probab=57.95 E-value=51 Score=22.65 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=28.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.+|+.+++=...+|..|.+.+....++...|+.++..|+++
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777777776666666666666666666543
No 74
>PRK09039 hypothetical protein; Validated
Probab=57.58 E-value=28 Score=30.72 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=16.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
+.+..++++..+|..|+.|+..+.+|...|+.+
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555554444433
No 75
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=57.01 E-value=18 Score=21.77 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 030828 152 IFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~~ 170 (171)
|.++++++=.++-||+|+-
T Consensus 18 Wa~llLaINflVAayYFhi 36 (37)
T PF08078_consen 18 WALLLLAINFLVAAYYFHI 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 7788888777778898873
No 76
>PRK00846 hypothetical protein; Provisional
Probab=56.73 E-value=54 Score=23.00 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=31.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.+|+.+++=...+|..|.+......++..+|+..+..|..+
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~r 56 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 56 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888887777777777777777655544
No 77
>PRK14127 cell division protein GpsB; Provisional
Probab=55.09 E-value=50 Score=24.63 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=28.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
++.++=|++....+..|..|+..+..++..|++++..++.+
T Consensus 26 ~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666777777777777777777777777777766554
No 78
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=54.90 E-value=42 Score=21.29 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
+....+....+..|+.+...+..++..|+.|
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666777777777777777777777654
No 79
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=54.81 E-value=60 Score=22.13 Aligned_cols=11 Identities=55% Similarity=0.794 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 030828 129 NKLRQDLELLR 139 (171)
Q Consensus 129 ~~Lq~El~~lr 139 (171)
.+|+.|++.|+
T Consensus 50 ~~Lk~E~e~L~ 60 (69)
T PF14197_consen 50 NKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 80
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=54.28 E-value=14 Score=23.09 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 030828 152 IFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~~ 170 (171)
.+++.+++.+++.+||.++
T Consensus 18 vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 18 VIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888765
No 81
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=54.14 E-value=44 Score=22.78 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 030828 114 ISKLKDEKNNAVQQNN 129 (171)
Q Consensus 114 I~kL~eE~~~~~~q~~ 129 (171)
|+.|++.++.+.+++.
T Consensus 7 ~~~Lr~rLd~~~rk~~ 22 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNS 22 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 82
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=53.99 E-value=13 Score=25.73 Aligned_cols=18 Identities=17% Similarity=0.722 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 030828 152 IFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~ 169 (171)
..+++.+++||++||+..
T Consensus 15 ~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777899999999864
No 83
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=53.96 E-value=31 Score=32.60 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=34.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
++++++++.-++..|..|.+|+..+.+||-+|..++..+|..
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 556788888888888899999999999999888887766643
No 84
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=53.82 E-value=42 Score=28.74 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=19.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKN----NAVQQNNKLRQDLE 136 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~----~~~~q~~~Lq~El~ 136 (171)
..+++++-.+.+.++.+|..+.. .+.+||++|++-|.
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555533332 25566666665444
No 85
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=53.52 E-value=72 Score=22.44 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=30.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
.-+..+......|..|+..+-.+...|++|+.+...++.
T Consensus 16 ~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 16 DKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777788888888888899999999877765554
No 86
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=53.52 E-value=70 Score=25.17 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 108 TEARALISKLKDEKNNAVQQNNKLRQ 133 (171)
Q Consensus 108 ~ea~a~I~kL~eE~~~~~~q~~~Lq~ 133 (171)
......|.++++|.....++.+.|++
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~ 94 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEA 94 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777753
No 87
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=52.96 E-value=23 Score=29.99 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=30.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
..+|++++++...+|..|+.|.+++...|-+|=+.
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999888443
No 88
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=52.89 E-value=11 Score=32.35 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHHHHhcCC
Q 030828 149 VSFIFVILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~~~~ 171 (171)
..+-.|++++|+|+|+.|+++++
T Consensus 236 iALG~v~ll~l~Gii~~~~~r~~ 258 (281)
T PF12768_consen 236 IALGTVFLLVLIGIILAYIRRRR 258 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 45678899999999999999873
No 89
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=52.67 E-value=75 Score=26.57 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNN---KLRQDLELLRR 140 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~---~Lq~El~~lr~ 140 (171)
+.++.++..+|++|...+..++. .+++|.+.||+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333 33344445544
No 90
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.07 E-value=67 Score=21.25 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
|.+...++.+.|.+|..+.+.+..+-+..++|
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443
No 91
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=51.75 E-value=85 Score=24.80 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=23.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
..+.++.+-++.+++++.. .+++++++|+..+-++
T Consensus 28 ~~km~~i~P~~~~i~~k~k---~~~~~~~~e~~~l~k~ 62 (181)
T TIGR03592 28 MRKMQELQPKLKEIQEKYK---DDPQKLQQEMMKLYKE 62 (181)
T ss_pred HHHHHHhhHHHHHHHHHHH---hhHHHHHHHHHHHHHH
Confidence 4566677777777777543 4456677777766665
No 92
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=51.37 E-value=15 Score=25.68 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=18.3
Q ss_pred CchH-HHHHHHHHHHHHHHHHhcCC
Q 030828 148 GVSF-IFVILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 148 G~~~-~~V~~v~ll~~llgy~~~~~ 171 (171)
-+|+ ...+++||+|.+|+|.|-+|
T Consensus 51 ~iPvaagl~ll~lig~Fis~vMlKs 75 (81)
T KOG3488|consen 51 TIPVAAGLFLLCLIGTFISLVMLKS 75 (81)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3564 45678999999999998654
No 93
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=50.57 E-value=91 Score=22.32 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
|.+.++++.+..+++..+..+.++|++...
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k 32 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKK 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554444
No 94
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=50.45 E-value=3.1 Score=25.53 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=17.5
Q ss_pred CCchHHHHHHHHHHHHH--HHHHhcCC
Q 030828 147 GGVSFIFVILVGLVGIV--LGYVMKKS 171 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~l--lgy~~~~~ 171 (171)
+-+|+|+|..++=++.+ +|.||+++
T Consensus 5 GriPLWlV~tv~G~~vi~~vgiFfyGs 31 (39)
T PRK02565 5 GRIPLWLVATVAGMGVIFVVGLFFYGS 31 (39)
T ss_pred CccceeehhhhhHHHHHhheeeEEeec
Confidence 45899998777655544 77777764
No 95
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=50.41 E-value=53 Score=27.50 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=28.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 030828 99 ERIEHQDKSTEARALISKLKDEKN---NAVQQNNKLRQDLE 136 (171)
Q Consensus 99 ~~~~l~~kl~ea~a~I~kL~eE~~---~~~~q~~~Lq~El~ 136 (171)
++.++.++..+.++++..|+.+.. .+..||++|++-|.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677788888888888877766 56888888877655
No 96
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=49.98 E-value=74 Score=21.63 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=25.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
+..|+..-....+++..++.|++.++..|...++.++
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777777777776666655
No 97
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=49.76 E-value=77 Score=21.23 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.|...++.-..+...+...-.+|..|.+++..|+
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 98
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=49.08 E-value=27 Score=20.11 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 030828 151 FIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~ 169 (171)
+-.++..-|+-+|+||+.+
T Consensus 3 ~~vi~g~llv~lLl~YLvY 21 (29)
T PRK14750 3 FSIVCGALLVLLLLGYLVY 21 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666677888754
No 99
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.74 E-value=58 Score=25.73 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhc
Q 030828 155 ILVGLVGIVLGYVMK 169 (171)
Q Consensus 155 ~~v~ll~~llgy~~~ 169 (171)
++++++++++||+..
T Consensus 161 ~i~~~~a~~la~~r~ 175 (177)
T PF07798_consen 161 VIFGCVALVLAILRL 175 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455667788887653
No 100
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=48.73 E-value=82 Score=23.20 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH-HHhc
Q 030828 152 IFVILVGLVGIVLG-YVMK 169 (171)
Q Consensus 152 ~~V~~v~ll~~llg-y~~~ 169 (171)
..++++++..+-+| |+..
T Consensus 96 ~~~~~~~lp~~a~~lY~~l 114 (117)
T TIGR03142 96 ALVVVLLLPVLALGLYLKL 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 33344444444445 4443
No 101
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=48.65 E-value=30 Score=32.83 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=17.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
.|++.|.++.++...|+.|...+++|...|-.|
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 455555555555555555555555555554433
No 102
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=48.63 E-value=26 Score=31.41 Aligned_cols=19 Identities=11% Similarity=0.361 Sum_probs=8.7
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDE 120 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE 120 (171)
.|+....+.+.++.+|++|
T Consensus 43 ~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 43 SLKKENNDLKIEVERLENE 61 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 103
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=48.55 E-value=77 Score=23.47 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=26.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
...|+.+|.+-.+.|-++..|.+++.-.|++|.
T Consensus 28 ~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~ 60 (102)
T PF10205_consen 28 NAELKEQLKEKEQALRKLEQENDSLTFRNQQLT 60 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888889999998888887777774
No 104
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=48.44 E-value=48 Score=23.44 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=29.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.-+|+..|......|...++|...+..+|+-||+=...|-
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777888888888888888888888888876555443
No 105
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=47.98 E-value=23 Score=22.40 Aligned_cols=19 Identities=42% Similarity=0.821 Sum_probs=12.4
Q ss_pred CCchHH--HHHHHHHHHHHHH
Q 030828 147 GGVSFI--FVILVGLVGIVLG 165 (171)
Q Consensus 147 ~G~~~~--~V~~v~ll~~llg 165 (171)
+|-|+. +.-.++|||||+|
T Consensus 19 g~~SL~HF~LT~~gll~~lv~ 39 (45)
T PF11688_consen 19 GGTSLFHFGLTAVGLLGFLVG 39 (45)
T ss_pred cCcchhHHHHHHHHHHHHHHH
Confidence 444543 3456888998876
No 106
>PRK09546 zntB zinc transporter; Reviewed
Probab=47.93 E-value=97 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 030828 153 FVILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 153 ~V~~v~ll~~llgy~~~~~ 171 (171)
++++++++++++.|+|+++
T Consensus 303 ~l~im~~i~~~~~~~fkrk 321 (324)
T PRK09546 303 FCLLLVVLIGGVAWWLKRS 321 (324)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445556666677777763
No 107
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=47.68 E-value=77 Score=23.41 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=26.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El 135 (171)
...+++++..+...+.+|+........+.+.|++|.
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556777888888888888887777777777777663
No 108
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.13 E-value=82 Score=20.78 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=24.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
+++++++......|..++.|..........+.+-
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777888877777777777776543
No 109
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=47.07 E-value=46 Score=23.37 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 114 ISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 114 I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
|..|++|...+.++.++|..||..+++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555554443
No 110
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=46.23 E-value=61 Score=22.99 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQ 133 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~ 133 (171)
+.++++.|..|+.++.....+++.++.
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333443333
No 111
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=46.20 E-value=66 Score=22.60 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
+..+...++.+++.|.+.+..+|.+|+-|..
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~ 66 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIA 66 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777777777777777765544
No 112
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=45.86 E-value=1.2e+02 Score=26.09 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=11.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhcC
Q 030828 148 GVSFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 148 G~~~~~V~~v~ll~~llgy~~~~ 170 (171)
|++ .+.+++.++++++.+||++
T Consensus 297 Gy~-~~l~~m~~~~~~~~~~frr 318 (322)
T COG0598 297 GYP-IALILMLLLALLLYLYFRR 318 (322)
T ss_pred cHH-HHHHHHHHHHHHHHHHHHh
Confidence 455 3344445555555566655
No 113
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=44.51 E-value=80 Score=24.33 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=26.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
++.+++++.++.....++..|+.++...+..|..+++.+.
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~ 55 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLE 55 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777766666444
No 114
>PRK14163 heat shock protein GrpE; Provisional
Probab=44.38 E-value=1.6e+02 Score=24.58 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=8.4
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEK 121 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~ 121 (171)
.++.++.+.+....++..|.
T Consensus 51 ~l~~e~~el~d~~lR~~AEf 70 (214)
T PRK14163 51 QVRTALGERTADLQRLQAEY 70 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 115
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=44.05 E-value=57 Score=21.85 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030828 112 ALISKLKDEKNNAVQQNNKLRQDLELLRREGK 143 (171)
Q Consensus 112 a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~~ 143 (171)
.++.-|++.+..+..+|.+|+.|-..||+..+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45556666666666667777666666666543
No 116
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.67 E-value=70 Score=21.43 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=21.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
-.++.+|.+|......|..++..+..+-..+
T Consensus 28 ~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888887777766655544433
No 117
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=43.62 E-value=16 Score=31.86 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=19.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcC
Q 030828 147 GGVSFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~llgy~~~~ 170 (171)
..+|+.+++...|+=++||||+++
T Consensus 276 ~l~piil~IG~vl~i~~Ig~~ifK 299 (305)
T PF04639_consen 276 SLLPIILIIGGVLLIVFIGYFIFK 299 (305)
T ss_pred hhhHHHHHHHHHHHHHHhhheeeE
Confidence 468888888888888889999886
No 118
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.60 E-value=76 Score=27.63 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 030828 155 ILVGLVGIVLGYV 167 (171)
Q Consensus 155 ~~v~ll~~llgy~ 167 (171)
++.|-+.+||..+
T Consensus 173 AA~Gq~~LLL~~l 185 (314)
T PF04111_consen 173 AAWGQTALLLQTL 185 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554433
No 119
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=43.18 E-value=64 Score=25.09 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
.+++++.........|..|+...+.++..|
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 120
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=42.89 E-value=32 Score=21.89 Aligned_cols=19 Identities=32% Similarity=0.516 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 030828 151 FIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~ 169 (171)
.+.=+++.++++.|||++.
T Consensus 26 ~q~~ll~vllsIalGylvs 44 (48)
T PF06612_consen 26 RQARLLIVLLSIALGYLVS 44 (48)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3555667777888888753
No 121
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=42.80 E-value=73 Score=23.46 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 109 EARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 109 ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
+..++|.+|+.++..+..||..|+......+
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445566666666666666666655554333
No 122
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=42.69 E-value=90 Score=22.41 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=24.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
.+-=|+..|+.++.+|++|...+..|......+..
T Consensus 20 y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 20 YLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888887777777766655544
No 123
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=42.18 E-value=95 Score=24.83 Aligned_cols=18 Identities=22% Similarity=0.529 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030828 117 LKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 117 L~eE~~~~~~q~~~Lq~E 134 (171)
|++|+..+..+|+.|+.|
T Consensus 109 l~~e~~~l~~~~e~Le~e 126 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKE 126 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 124
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.85 E-value=1e+02 Score=27.53 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFI 152 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~~~~~~G~~~~ 152 (171)
+.++.++...|..++.+++....+..+.+++++. +.++-+.|-|+.
T Consensus 286 ~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee---rg~~mtD~sPlv 331 (359)
T PF10498_consen 286 QEKYKQASEGVSERTRELAEISEELEQVKQEMEE---RGSSMTDGSPLV 331 (359)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCCCHHH
Confidence 3444444444444444444444444444444332 122223676653
No 125
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.83 E-value=67 Score=27.17 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=15.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
++..+++..+.+|.+|+-++.....+.+++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455566666666666655444444444433
No 126
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=41.74 E-value=35 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 030828 151 FIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~~ 170 (171)
+.+++++++||++|-.+.++
T Consensus 7 V~i~iv~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 7 VSIFIVMGLLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34556677777777666543
No 127
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=41.65 E-value=27 Score=24.42 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHHHHHhcC
Q 030828 149 VSFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~~~ 170 (171)
+=+-.++++|+|+.+.+.|+|+
T Consensus 34 VviPl~L~LCiLvl~yai~~fk 55 (74)
T PF11857_consen 34 VVIPLVLLLCILVLIYAIFQFK 55 (74)
T ss_pred EeHHHHHHHHHHHHHHHhheee
Confidence 3346778899999988877665
No 128
>PF10981 DUF2788: Protein of unknown function (DUF2788); InterPro: IPR021249 This bacterial family of proteins have no known function.
Probab=41.59 E-value=48 Score=21.66 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=19.8
Q ss_pred HhccCCC-CCchHHHHHHHHHHHHHHHH
Q 030828 140 REGKKNR-GGVSFIFVILVGLVGIVLGY 166 (171)
Q Consensus 140 ~~~~~~~-~G~~~~~V~~v~ll~~llgy 166 (171)
++++... +.|=+++|+.++.+||++=.
T Consensus 19 kks~agkfG~~ilf~vLglG~~GFi~K~ 46 (52)
T PF10981_consen 19 KKSKAGKFGTFILFLVLGLGCAGFIAKG 46 (52)
T ss_pred HhcCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 3334444 66889999999999998643
No 129
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=41.50 E-value=1.1e+02 Score=26.84 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHH
Q 030828 122 NNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYV 167 (171)
Q Consensus 122 ~~~~~q~~~Lq~El~~lr~~~~~~~~G~~~~~V~~v~ll~~llgy~ 167 (171)
.+.+++|++++++..-+-.. +--|.+++.++=++.++++|+
T Consensus 228 s~vireRkk~~~Kv~AlsaE-----aRmSA~Il~~lP~~v~~li~~ 268 (309)
T COG4965 228 SRVIRERKKMKAKVRALSAE-----ARMSAWILGALPLLVGLLIYL 268 (309)
T ss_pred HHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHHhhHHHHHHHHH
Confidence 34556666666554433222 113344444444444444443
No 130
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=41.20 E-value=98 Score=21.25 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=27.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
+.++...+..+...-+.|.+..+.+.++...|-+.+++|
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556777777777777777777777777777776666654
No 131
>COG3455 Type VI protein secretion system component VasF [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.90 E-value=24 Score=30.34 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHhcC
Q 030828 149 VSFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~~~ 170 (171)
+|+|++++.+++.++++|++++
T Consensus 220 ~p~w~~~~~~~~~lv~~~~g~~ 241 (262)
T COG3455 220 LPVWVVALGAVALLVVAYLGLS 241 (262)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998764
No 132
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=40.76 E-value=1.1e+02 Score=20.72 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=27.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
...+..++..++.++.++++|.+.+..|...|.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 346777888889999999999888888888885
No 133
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=40.59 E-value=1.1e+02 Score=22.30 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=34.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+|+-+|.=++.+-.-|+.-+..+-.+|+.|.+||..++..
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788888888888888888888999999999999988764
No 134
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.17 E-value=1.6e+02 Score=22.27 Aligned_cols=16 Identities=13% Similarity=0.430 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 030828 153 FVILVGLVGIVLGYVM 168 (171)
Q Consensus 153 ~V~~v~ll~~llgy~~ 168 (171)
.++++.++.++|-|++
T Consensus 99 ~~v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 99 GLVIIILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444555555665
No 135
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.93 E-value=71 Score=29.73 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=10.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNN 123 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~ 123 (171)
+++.++.++..+-.+|++|...
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~ 91 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENER 91 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 136
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=39.90 E-value=8.3 Score=29.18 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=0.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhc
Q 030828 147 GGVSFIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~llgy~~~ 169 (171)
.-+++.-++++++++++=-|+++
T Consensus 157 ~~~si~~~~vli~~~~~Qv~~lk 179 (183)
T PF01105_consen 157 MWWSIIQIVVLILVSVWQVYYLK 179 (183)
T ss_dssp ---------------------HH
T ss_pred EhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666665555445554
No 137
>PRK10722 hypothetical protein; Provisional
Probab=39.82 E-value=85 Score=26.80 Aligned_cols=36 Identities=33% Similarity=0.325 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKL----KDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 104 ~~kl~ea~a~I~kL----~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.-.|++.+.--++| ..+++.+.+|+..||.+|+...
T Consensus 157 ~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~ 196 (247)
T PRK10722 157 QLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTT 196 (247)
T ss_pred HHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666 5566667777777776655433
No 138
>KOG4007 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.53 E-value=12 Score=30.96 Aligned_cols=25 Identities=24% Similarity=0.568 Sum_probs=20.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhc
Q 030828 145 NRGGVSFIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 145 ~~~G~~~~~V~~v~ll~~llgy~~~ 169 (171)
++.-+-+.+++.+++||+|++|.+|
T Consensus 129 nTtliKVvvIivi~ii~iL~lYMvf 153 (229)
T KOG4007|consen 129 NTTLIKVVVIIVISIIGILLLYMVF 153 (229)
T ss_pred CceEEEEEEeehHHHHHHHHHHHHH
Confidence 3345677888999999999999876
No 139
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.49 E-value=80 Score=26.94 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=10.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKN 122 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~ 122 (171)
+.+++.|+.|..++-..|.+|+.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~ele 159 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELE 159 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555444444443333
No 140
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=39.40 E-value=32 Score=24.27 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=11.5
Q ss_pred CCchHHHHHHHHHHHHH
Q 030828 147 GGVSFIFVILVGLVGIV 163 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~l 163 (171)
+|++.|.+++++++.+|
T Consensus 2 gg~g~~ellIIlvIvll 18 (78)
T PRK00720 2 GSFSIWHWLIVLAVVLL 18 (78)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 46777777776666665
No 141
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=39.15 E-value=46 Score=19.15 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 030828 153 FVILVGLVGIVLGYVM 168 (171)
Q Consensus 153 ~V~~v~ll~~llgy~~ 168 (171)
.+..+.++-.|+||+.
T Consensus 5 vi~G~ilv~lLlgYLv 20 (29)
T PRK14748 5 VITGVLLVFLLLGYLV 20 (29)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555556677765
No 142
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=38.95 E-value=1.7e+02 Score=22.08 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=17.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNN---AVQQNNKLRQDLELLRR 140 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~---~~~q~~~Lq~El~~lr~ 140 (171)
.+...-+++.++|.+|+.+... ...+...|+.++..|..
T Consensus 41 ~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 41 RLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544422 23333344444444443
No 143
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=38.95 E-value=62 Score=30.31 Aligned_cols=40 Identities=28% Similarity=0.238 Sum_probs=33.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
.+++.+++.+.+...+|.+-+..++.|..+|+++++.|.+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567778888888899999899999999999999988764
No 144
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=38.91 E-value=95 Score=22.36 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 111 RALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 111 ~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
...|..|+.+...+.+++..|+.+++.-|
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665555433
No 145
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=38.72 E-value=71 Score=23.01 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 111 RALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 111 ~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
..++.+|...++....+|..|.+++..+|+
T Consensus 79 ~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 79 KKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677777777788888888888776654
No 146
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.53 E-value=35 Score=23.91 Aligned_cols=16 Identities=31% Similarity=0.862 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcCC
Q 030828 156 LVGLVGIVLGYVMKKS 171 (171)
Q Consensus 156 ~v~ll~~llgy~~~~~ 171 (171)
++.+++.-|||+|+|.
T Consensus 12 llvi~gMsiG~I~krk 27 (77)
T COG2991 12 LLVIAGMSIGYIFKRK 27 (77)
T ss_pred HHHHHHHhHhhheecc
Confidence 3444556699999873
No 147
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=38.33 E-value=1.8e+02 Score=22.82 Aligned_cols=35 Identities=14% Similarity=0.354 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
..+.++++-++.++++.. ....++.++|...+.++
T Consensus 29 ~~k~~~~~P~l~~i~~k~---~~~~~~~~~~~~~l~k~ 63 (198)
T PF02096_consen 29 SAKMQELQPELKEIQEKY---KEDQQKMQQEMQKLYKK 63 (198)
T ss_pred HHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHH
Confidence 345566666666666643 33444566777767666
No 148
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=38.28 E-value=2.3e+02 Score=23.49 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=11.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhc
Q 030828 147 GGVSFIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~llgy~~~ 169 (171)
.|.=.|+++++.++.|++-|+|-
T Consensus 226 ~~~~~~~~i~~v~~~Fi~mvl~i 248 (251)
T PF09753_consen 226 WGCWTWLMIFVVIIVFIMMVLFI 248 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Confidence 45444444444444555555553
No 149
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.08 E-value=2.2e+02 Score=26.77 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=42.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNR-GGVSFIFVILVGLVGIVL 164 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~~~~~-~G~~~~~V~~v~ll~~ll 164 (171)
+...+.+..+....+..|+.+-..+++.-..++.++...+|...+++ .|+|--|.-.+...+=-|
T Consensus 388 l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i 453 (560)
T PF06160_consen 388 LEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEI 453 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 33445555555666666666666666666666777777777766777 899987776665554333
No 150
>PHA02657 hypothetical protein; Provisional
Probab=38.01 E-value=29 Score=25.11 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 030828 152 IFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~~ 170 (171)
.|++.+|++.|+|=||.+-
T Consensus 32 vfv~vI~il~flLLYLvkW 50 (95)
T PHA02657 32 IFIFVVCILIYLLIYLVDW 50 (95)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778889999999998763
No 151
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=37.98 E-value=36 Score=22.59 Aligned_cols=17 Identities=24% Similarity=0.426 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhc
Q 030828 153 FVILVGLVGIVLGYVMK 169 (171)
Q Consensus 153 ~V~~v~ll~~llgy~~~ 169 (171)
|++.++|+-+|-||+++
T Consensus 5 f~~ti~lvv~LYgY~yh 21 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYH 21 (56)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666677778899886
No 152
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=37.89 E-value=45 Score=21.45 Aligned_cols=19 Identities=21% Similarity=0.602 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 030828 151 FIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~ 169 (171)
..++++++.+|+.+|+++-
T Consensus 32 tl~i~~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 32 TLFILLFAAIGYYIGKYLD 50 (51)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5677788888888887764
No 153
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=37.81 E-value=1.2e+02 Score=24.30 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=22.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
.++|+..|.+.+++|..|+.-+..-.++-..|++.
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45777778888888887776655444444445444
No 154
>PRK06285 chorismate mutase; Provisional
Probab=37.80 E-value=1.2e+02 Score=21.49 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=17.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
+++..++++.-.+|..|=.+|..+.++.-.++
T Consensus 10 ~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K 41 (96)
T PRK06285 10 NEIRKRIDEIDEQIIDLIAERTSLAKEIAELK 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566665555555555554443
No 155
>PF15018 InaF-motif: TRP-interacting helix
Probab=37.67 E-value=43 Score=20.48 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q 030828 151 FIFVILVGLVGIVLG 165 (171)
Q Consensus 151 ~~~V~~v~ll~~llg 165 (171)
+.+++.|++.+++|.
T Consensus 11 ~~Yl~~VSl~Ai~Ls 25 (38)
T PF15018_consen 11 VAYLFSVSLAAIVLS 25 (38)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467788899999887
No 156
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=37.59 E-value=91 Score=22.01 Aligned_cols=21 Identities=14% Similarity=0.350 Sum_probs=8.9
Q ss_pred CCCCchHHHHHHHHHHHHHHH
Q 030828 145 NRGGVSFIFVILVGLVGIVLG 165 (171)
Q Consensus 145 ~~~G~~~~~V~~v~ll~~llg 165 (171)
+.-|+--...+++++|.+|+|
T Consensus 44 ta~gikev~l~l~ail~lL~a 64 (79)
T PF15168_consen 44 TAIGIKEVALVLAAILVLLLA 64 (79)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 334544333334444444444
No 157
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=37.54 E-value=1.3e+02 Score=22.55 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=29.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
..++.++..+...+.+|++++....++-..+++.+..+.+
T Consensus 97 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 97 EILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777888888888777777777777777666554
No 158
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=37.49 E-value=51 Score=24.44 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=17.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhc
Q 030828 147 GGVSFIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~llgy~~~ 169 (171)
+|.+..+++++.++-.++-|+|+
T Consensus 51 ~~~~~~~~~~~w~~~A~~ly~~R 73 (103)
T PF11027_consen 51 GGNSMFMMMMLWMVLAMALYLLR 73 (103)
T ss_pred CCccHHHHHHHHHHHHHHHHHcC
Confidence 56777777777777777778775
No 159
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.36 E-value=26 Score=26.68 Aligned_cols=17 Identities=12% Similarity=0.256 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhcC
Q 030828 154 VILVGLVGIVLGYVMKK 170 (171)
Q Consensus 154 V~~v~ll~~llgy~~~~ 170 (171)
++.+.++-+||.|+++|
T Consensus 74 ~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444456777765
No 160
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.07 E-value=1.2e+02 Score=21.82 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=28.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
...++.++......|.+|+++......+-+.++.++..+
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778888888888887777777777777666543
No 161
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.07 E-value=1.1e+02 Score=21.27 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=24.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El 135 (171)
..++.+.......|.+|+.++.....+-+.++.+|
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777778888888777777766666665554
No 162
>COG3924 Predicted membrane protein [Function unknown]
Probab=36.62 E-value=48 Score=23.29 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=16.0
Q ss_pred CCchHHHH---HHHHHHHHHHHHHh
Q 030828 147 GGVSFIFV---ILVGLVGIVLGYVM 168 (171)
Q Consensus 147 ~G~~~~~V---~~v~ll~~llgy~~ 168 (171)
.|||+||= +++-||.++|+|.|
T Consensus 40 ~gfP~WFE~aCi~lPllFi~l~~~m 64 (80)
T COG3924 40 TGFPLWFEMACILLPLLFIVLCWAM 64 (80)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 68999874 55666777777765
No 163
>PF14209 DUF4321: Domain of unknown function (DUF4321)
Probab=36.58 E-value=29 Score=22.12 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhc
Q 030828 154 VILVGLVGIVLGYVMK 169 (171)
Q Consensus 154 V~~v~ll~~llgy~~~ 169 (171)
+=++.++|+++||+++
T Consensus 34 inl~sIlGiila~~lY 49 (49)
T PF14209_consen 34 INLASILGIILAIWLY 49 (49)
T ss_pred ecHHHHHHHHHHhhhC
Confidence 3467889999998864
No 164
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=36.57 E-value=27 Score=27.89 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 030828 152 IFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~~ 170 (171)
.+.++++|-+++|.||+.|
T Consensus 97 ~~~Vl~g~s~l~i~yfvir 115 (163)
T PF06679_consen 97 ALYVLVGLSALAILYFVIR 115 (163)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999865
No 165
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=36.29 E-value=91 Score=20.63 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
++-+.-.+..+|-.|..++.+||..|+
T Consensus 27 rY~~vL~~R~~l~~e~~~L~~qN~eLr 53 (60)
T PF14775_consen 27 RYNKVLLDRAALIQEKESLEQQNEELR 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666667776664
No 166
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=36.11 E-value=1.3e+02 Score=23.30 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
...-+++.|..|++++..+..+++.|..||..+|.
T Consensus 46 daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 46 DAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777777777766665553
No 167
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=35.98 E-value=53 Score=21.15 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 030828 150 SFIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 150 ~~~~V~~v~ll~~llgy~~ 168 (171)
++-|..++|+.-+.+.||+
T Consensus 10 ~~~F~~lIC~Fl~~~~~F~ 28 (54)
T PF06716_consen 10 LLAFGFLICLFLFCLVVFI 28 (54)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666554
No 168
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=35.94 E-value=57 Score=25.13 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=24.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
...|++++..=.++|..|++++..+.+.|..|.
T Consensus 96 ~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 96 VKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777778888888777777777664
No 169
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=35.92 E-value=1e+02 Score=29.30 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=36.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.=|+.+..+.-.+|..|++++....++.+.+..+|...++.
T Consensus 366 kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 366 KCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999988875
No 170
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=35.87 E-value=47 Score=22.19 Aligned_cols=9 Identities=44% Similarity=1.268 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 030828 155 ILVGLVGIV 163 (171)
Q Consensus 155 ~~v~ll~~l 163 (171)
+++|++||+
T Consensus 44 ~i~G~iGf~ 52 (61)
T PRK09400 44 LLIGLIGFI 52 (61)
T ss_pred HHHHHHHHH
Confidence 333444443
No 171
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.85 E-value=87 Score=29.22 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=10.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKN 122 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~ 122 (171)
+.+.+.+|.+.++.+|+.|+.
T Consensus 73 eqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555544433
No 172
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=35.80 E-value=82 Score=23.17 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 113 LISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 113 ~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+..+.+|+..+.+++.+|+.|.+.|++.
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888888888888888765
No 173
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=35.58 E-value=72 Score=28.04 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 105 DKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 105 ~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.++++|+.+|..|++|+..-..++..-++|...|.
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999988776666666666655443
No 174
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=35.40 E-value=96 Score=26.98 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=26.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
.++.+..+.+.++..++.|.+...++.+++++++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566666777777777777777777777777766553
No 175
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.35 E-value=1.1e+02 Score=26.32 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=18.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
++.|.++..+....|..++++.+....+-++|+++++
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555544443
No 176
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=35.30 E-value=1e+02 Score=24.84 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=26.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
-|..+|.++......|++++..+..+-..+++||.
T Consensus 85 lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 85 LLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888777777777776665
No 177
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.19 E-value=2.5e+02 Score=23.75 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHh-ccCCCCCchHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE-------LLRRE-GKKNRGGVSFIFVILVGLVGIVLGYV 167 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~-------~lr~~-~~~~~~G~~~~~V~~v~ll~~llgy~ 167 (171)
++..+..|.++-..|.-++.-+..=+.++.+=.. ++++- ..++...+=+-.|+.+|+|-+|+-+|
T Consensus 158 vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~ 230 (231)
T KOG3208|consen 158 VDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWI 230 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4555566666666665555544443333322111 11111 12233667788889999988777554
No 178
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=35.18 E-value=1.3e+02 Score=28.62 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=37.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIF 153 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~~~~~~G~~~~~ 153 (171)
|..+.+++..++.+=+....+-.||.+|..++..+|....+..+|+...|
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~y 90 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKY 90 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHh
Confidence 55666777766666666777889999999999999987655556766554
No 179
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=35.08 E-value=1.2e+02 Score=25.44 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=30.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
-..|..++.++...|.+|.++...--.+...|++++...+
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999999998888888888887766444
No 180
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=34.93 E-value=1.2e+02 Score=24.43 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+.++.....+-|++++......|..|+.++..++.
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~ 109 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQKLTQ 109 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455888888888888888887776543
No 181
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=34.89 E-value=43 Score=21.73 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH
Q 030828 151 FIFVILVGLVGIVL 164 (171)
Q Consensus 151 ~~~V~~v~ll~~ll 164 (171)
+.+++++|++||+|
T Consensus 19 Li~A~vlfi~Gi~i 32 (50)
T PF02038_consen 19 LIFAGVLFILGILI 32 (50)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45677788888876
No 182
>PRK07857 hypothetical protein; Provisional
Probab=34.88 E-value=1.3e+02 Score=22.30 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=15.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
.++..++++.-.+|.+|=.+|.....+.-++
T Consensus 31 ~~lR~eID~ID~eIl~LL~eR~~la~eIg~~ 61 (106)
T PRK07857 31 DELREEIDRLDAEILALVKRRTEVSQAIGKA 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444444433
No 183
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.64 E-value=1.3e+02 Score=26.26 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 030828 152 IFVILVGLVGIVLGYVM 168 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~ 168 (171)
+.|+++..|+=-+||=|
T Consensus 177 q~~LLL~~la~~l~~~f 193 (314)
T PF04111_consen 177 QTALLLQTLAKKLNFKF 193 (314)
T ss_dssp HHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 45555555554455443
No 184
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=34.46 E-value=43 Score=23.47 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=11.0
Q ss_pred CCchHHHHHHHHHHHHH
Q 030828 147 GGVSFIFVILVGLVGIV 163 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~l 163 (171)
+||+.+..++++++.+|
T Consensus 2 gg~s~~ellIIlvIvlL 18 (75)
T PRK04561 2 GSFSIWHWLVVLVIVLL 18 (75)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 46777766666666555
No 185
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=34.42 E-value=48 Score=18.93 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=3.6
Q ss_pred CCCCchHHHHHHH
Q 030828 145 NRGGVSFIFVILV 157 (171)
Q Consensus 145 ~~~G~~~~~V~~v 157 (171)
++.||++.=++++
T Consensus 12 ~~~GFTLiEllVa 24 (31)
T PF13544_consen 12 RQRGFTLIELLVA 24 (31)
T ss_dssp ------HHHHHHH
T ss_pred ccCCccHHHHHHH
Confidence 4489997555433
No 186
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=34.30 E-value=22 Score=25.78 Aligned_cols=14 Identities=57% Similarity=0.973 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH
Q 030828 154 VILVGLVGIVLGYV 167 (171)
Q Consensus 154 V~~v~ll~~llgy~ 167 (171)
+++++|+|+++|+-
T Consensus 30 iAl~GllGi~~Ge~ 43 (90)
T PF07235_consen 30 IALVGLLGILLGEQ 43 (90)
T ss_pred hHHHHHHHHhcccc
Confidence 46999999999963
No 187
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.21 E-value=35 Score=29.12 Aligned_cols=19 Identities=26% Similarity=0.777 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHH-HHHHhcC
Q 030828 152 IFVILVGLVGIV-LGYVMKK 170 (171)
Q Consensus 152 ~~V~~v~ll~~l-lgy~~~~ 170 (171)
+|++++|+|+|+ |-|+|++
T Consensus 254 ~fli~lgvLafi~~i~lM~r 273 (299)
T KOG3970|consen 254 LFLIFLGVLAFITIIMLMKR 273 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 889999999988 4466653
No 188
>PRK14160 heat shock protein GrpE; Provisional
Probab=34.20 E-value=1.4e+02 Score=24.85 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
++..+..+.+.+.+|++++..+..+..+++.+.+..|+
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 189
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.09 E-value=1.5e+02 Score=22.99 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030828 122 NNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 122 ~~~~~q~~~Lq~El~~lr~ 140 (171)
..+..++..+...|..|+.
T Consensus 119 ~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444555543
No 190
>PRK14143 heat shock protein GrpE; Provisional
Probab=34.06 E-value=1.2e+02 Score=25.53 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=8.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNN 123 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~ 123 (171)
++.++.+.+....++..+...
T Consensus 79 l~~e~~elkd~~lR~~AdfeN 99 (238)
T PRK14143 79 LKQELEELNSQYMRIAADFDN 99 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 191
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=34.01 E-value=1.1e+02 Score=26.25 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=20.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
--|+..+|...+|..|+||...++.+|+.|
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~L 116 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSL 116 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777766666555555
No 192
>PRK09239 chorismate mutase; Provisional
Probab=33.83 E-value=1.6e+02 Score=21.52 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 105 DKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 105 ~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
..|.+.+..|..+-.++-.++.+|..+
T Consensus 10 ~~L~~lR~~ID~ID~eIv~LLa~R~~l 36 (104)
T PRK09239 10 AELAALRQSIDNIDAALIHMLAERFKC 36 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555544444444444444
No 193
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=33.57 E-value=1.5e+02 Score=23.16 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=20.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
.++..+.+....+.++++++.....++.+++.....++.
T Consensus 95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544
No 194
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=33.48 E-value=1.1e+02 Score=27.60 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=27.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
.++.+.......+..|+++...+.++.+++++|+..++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 26 ELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445566666777777777777777777777778777754
No 195
>CHL00108 psbJ photosystem II protein J
Probab=33.30 E-value=4 Score=25.21 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=16.6
Q ss_pred CCchHHHHHHHHHHHHH--HHHHhcCC
Q 030828 147 GGVSFIFVILVGLVGIV--LGYVMKKS 171 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~l--lgy~~~~~ 171 (171)
+-+|+|+|..++=++.+ +|.||+++
T Consensus 6 GRiPLWlVgtv~G~~vi~~vgiFfyGs 32 (40)
T CHL00108 6 GRIPLWLIGTVAGIAVIGLLGIFFYGS 32 (40)
T ss_pred ccccEEeeeehhhHhHHheeeeEEeec
Confidence 45899988766544443 67777654
No 196
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=33.17 E-value=1.7e+02 Score=26.15 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=23.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 030828 104 QDKSTEARALISKLKDEKNNA---VQQNNKLRQDLELLRRE 141 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~---~~q~~~Lq~El~~lr~~ 141 (171)
..+.++.+-++.+++++-... .++.+++++|+..|-++
T Consensus 159 ~~km~~lqPel~~Iq~Kyk~~~~d~~~~~k~q~e~~~Lykk 199 (357)
T PRK02201 159 QEKQEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQELYKK 199 (357)
T ss_pred HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 456777777777777754322 22356677787777665
No 197
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=33.09 E-value=46 Score=23.14 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=10.9
Q ss_pred CCchHHHHHHHHHHHHH
Q 030828 147 GGVSFIFVILVGLVGIV 163 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~l 163 (171)
+|++.|.++++.++.+|
T Consensus 2 g~~g~~elliIl~Ivll 18 (73)
T PRK02958 2 GSFSIWHWLIVLVIVVL 18 (73)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 35777766666666555
No 198
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=32.78 E-value=27 Score=25.78 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q 030828 149 VSFIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~ 168 (171)
|.+|-.+..+++|.++||+-
T Consensus 71 FaLQAAiGAgiIgY~lG~~~ 90 (100)
T PRK02898 71 FALQAALGAGIIGYILGYYK 90 (100)
T ss_pred HHHHHHHhhhhhheeeeehh
Confidence 44455555555555555543
No 199
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=32.76 E-value=1.5e+02 Score=19.54 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=25.7
Q ss_pred hhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISK-LKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~k-L~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
++.|+++|++-..+|.. |..|-+..+.++. .+++.+++.
T Consensus 13 I~~Lk~kLd~Kk~Eil~~ln~EY~kiLk~r~---~~lEevKrk 52 (56)
T PF08112_consen 13 ISILKSKLDEKKSEILSNLNMEYEKILKQRR---KELEEVKRK 52 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 45789999888777755 6666665555443 456666654
No 200
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=32.69 E-value=99 Score=20.60 Aligned_cols=23 Identities=17% Similarity=0.136 Sum_probs=15.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKN 122 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~ 122 (171)
+++|++..+-.+++|.+++.++.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777766544
No 201
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.65 E-value=1.6e+02 Score=27.53 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=19.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
.++++.+|++.+.+...+..++..+.+..+.+..|...|
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 557777777777665533333333333333333333333
No 202
>COG4711 Predicted membrane protein [Function unknown]
Probab=32.44 E-value=77 Score=26.49 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q 030828 149 VSFIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~ 168 (171)
++.++++++|++++.|+|.|
T Consensus 121 isp~h~lal~~~~l~I~y~f 140 (217)
T COG4711 121 ISPYHSLALVLVVLVIMYSF 140 (217)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999976
No 203
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.41 E-value=1.2e+02 Score=27.05 Aligned_cols=49 Identities=18% Similarity=0.334 Sum_probs=21.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCch
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNR---GGVS 150 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~~~~~---~G~~ 150 (171)
++++.++++...+..++........+.+.+.+.+..+..++.+.+ -|||
T Consensus 148 e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiP 199 (370)
T PF02994_consen 148 ELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIP 199 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES--
T ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecC
Confidence 334444444444444444333333444455555555555443333 4655
No 204
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=32.34 E-value=1.4e+02 Score=25.97 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
+++.|.+....|...+.++..+..+.+.+
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l 242 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEEL 242 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333333333333
No 205
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=32.32 E-value=32 Score=27.10 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 030828 152 IFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~~ 170 (171)
..+++.+++|..+|||++.
T Consensus 121 ~~l~Lavv~Ga~~G~flF~ 139 (155)
T KOG3386|consen 121 GYLFLAVVLGAGVGYFLFG 139 (155)
T ss_pred hHHHHHHHHHHhhhhheee
Confidence 3457778889999999885
No 206
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=32.04 E-value=42 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=15.7
Q ss_pred chH-HHHHHHHHHHHHHHHHhcC
Q 030828 149 VSF-IFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 149 ~~~-~~V~~v~ll~~llgy~~~~ 170 (171)
+|+ +.+++..++|+.++|++++
T Consensus 30 ~p~~~~~l~A~vis~~lS~~ll~ 52 (69)
T PF14012_consen 30 VPLLVAALLALVISMPLSYVLLR 52 (69)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 664 3445566788899999876
No 207
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=32.02 E-value=1.2e+02 Score=22.56 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=17.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
.+..+.+...++..+|..++..+.+|.+.|+.+
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444455555555555555555555555544
No 208
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=31.97 E-value=81 Score=22.33 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=21.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
..+++++.+++.++.+++.+++.+..+.+-|
T Consensus 73 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 73 KELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677777777778888777777666665544
No 209
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.88 E-value=1.1e+02 Score=26.02 Aligned_cols=35 Identities=14% Similarity=0.342 Sum_probs=20.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
+.+++..+.+.+.....+.+|+..++.++..|+.|
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655555666666666666555433
No 210
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=31.82 E-value=1.7e+02 Score=21.28 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=15.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
++..++++.-.+|..|=++|.....+.-.+
T Consensus 8 ~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~ 37 (102)
T TIGR01801 8 DLRAEVDQLNRQILALISRRGEVVAQIGHA 37 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544444433
No 211
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=31.75 E-value=1.1e+02 Score=19.48 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=16.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQ 126 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~ 126 (171)
++..+.|..+..++|+.|++.|..+..
T Consensus 14 ~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 14 YDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777665554443
No 212
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=31.58 E-value=1.2e+02 Score=26.11 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=20.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEK-------NNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~-------~~~~~q~~~Lq~El~~lr~ 140 (171)
++++....+...+-.+|+.|. .+++.+|.+|.++|+.+|+
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~ 139 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQ 139 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444444 4455555556666666554
No 213
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.48 E-value=2.1e+02 Score=27.10 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=31.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
...|..+|..+...-..+.+|+..+.+..+.|++||..-|+
T Consensus 443 c~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~ 483 (518)
T PF10212_consen 443 CRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR 483 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888877888888888888888888888776553
No 214
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=31.46 E-value=1.4e+02 Score=23.42 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=22.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.++.+..+....+.+|++.+..+.+....+.+++..+.
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665555555555443
No 215
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=31.45 E-value=33 Score=32.39 Aligned_cols=19 Identities=21% Similarity=0.611 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 030828 152 IFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~~ 170 (171)
+||++.+|+||+-|.||.+
T Consensus 486 liVLLAaLlSfLtg~~fq~ 504 (538)
T PF05781_consen 486 LIVLLAALLSFLTGLFFQR 504 (538)
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 6677778888888866654
No 216
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=31.38 E-value=30 Score=25.35 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=19.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
+.+.-|++....+..|..|+..+..++..|+.++.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~ 56 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLE 56 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45555666666666666666666555555544433
No 217
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.23 E-value=1.4e+02 Score=25.84 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
+.++.+.+.++..+++++..+..+...++.++.
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 218
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=31.22 E-value=1.6e+02 Score=23.97 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=28.1
Q ss_pred hhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKD----EKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~e----E~~~~~~q~~~Lq~El~~lr~ 140 (171)
.+.-.|+|.++--++|++ +++.+++++..|+.+|+.-++
T Consensus 109 ~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~R 151 (179)
T PF13942_consen 109 VLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTR 151 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888874 455688888889887774443
No 219
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=31.14 E-value=1.1e+02 Score=29.10 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
+..+.+..+++.+|.++++++.++.+.++++++.|+
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666667777777777777777777776666554
No 220
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=31.13 E-value=31 Score=24.28 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcC
Q 030828 150 SFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 150 ~~~~V~~v~ll~~llgy~~~~ 170 (171)
+-...+=+++-+++.|||+++
T Consensus 54 s~~~La~L~~~~mm~GYfLr~ 74 (86)
T PF05542_consen 54 SRENLAQLLAWSMMTGYFLRN 74 (86)
T ss_pred CHHHHHHHHHHHHHHhHHHHH
Confidence 446677888889999999975
No 221
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=31.04 E-value=21 Score=28.23 Aligned_cols=23 Identities=13% Similarity=0.485 Sum_probs=18.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhc
Q 030828 147 GGVSFIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~llgy~~~ 169 (171)
.-+-+.+++++++||+|++|.+|
T Consensus 52 ~tikVvVIivl~Vi~lLvlYM~f 74 (149)
T PF05434_consen 52 TTIKVVVIIVLWVIGLLVLYMLF 74 (149)
T ss_pred eEEEEEEEEeHHHHHHHHHHHHH
Confidence 44666778888999999998776
No 222
>PF05101 VirB3: Type IV secretory pathway, VirB3-like protein; InterPro: IPR007792 This entry represents type IV secretion system proteins VirB3, TrbD and AvhB. Type IV secretion systems are found in plant and animal pathogens, as well as in symbiotic bacteria. The tumour-inducing (Ti) plasmid of Rhizobium radiobacter (Agrobacterium tumefaciens) encodes two DNA transfer systems: VirB and Trb, where the virB operon is required for the transfer DNA to the plant host, and the trb system is required for the conjugal transfer of the Ti plasmid between cells of Agrobacterium [, ]. In addition, VirB3 is found associated with bacterial inner and outer membranes and assists T pilus formation as an assembly factor []. The conjugal transfer protein TrbD contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins []. This entry also includes avhB (Agrobacterium virulence homologue virB), which is most similar to the VirB type IV secretion system of Bartonella henselae (Rochalimaea henselae) [].
Probab=30.98 E-value=59 Score=22.36 Aligned_cols=21 Identities=24% Similarity=0.009 Sum_probs=14.3
Q ss_pred CCchHHHHHHHHHHHHHHHHH
Q 030828 147 GGVSFIFVILVGLVGIVLGYV 167 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~llgy~ 167 (171)
.|+|...+++.++++++++.+
T Consensus 20 ~Gvp~~~~~~~~~~~~~l~~~ 40 (89)
T PF05101_consen 20 LGVPREPFILNLGLAFLLFLI 40 (89)
T ss_pred cCCcHHHHHHHHHHHHHHHHH
Confidence 799977776666666665533
No 223
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=30.89 E-value=1.6e+02 Score=24.71 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=27.2
Q ss_pred hhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 103 HQDKSTEARALISKL-KDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 103 l~~kl~ea~a~I~kL-~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+..++..+.++..+ +.|-..+..||.+|+.|++.+|..
T Consensus 99 Q~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~ 138 (220)
T KOG3156|consen 99 QKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSS 138 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665 445566888999999888876643
No 224
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=30.76 E-value=1.5e+02 Score=22.44 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 114 ISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 114 I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+.-|++++..+...|..|.+|-.+||+
T Consensus 69 Ve~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 69 VEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444443
No 225
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.61 E-value=1.3e+02 Score=25.17 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
+++.+..++...+|++|+.+....-+.+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~ 177 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKA 177 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444443333333
No 226
>PRK14161 heat shock protein GrpE; Provisional
Probab=30.49 E-value=1.5e+02 Score=23.90 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=8.3
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEK 121 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~ 121 (171)
.++.++++.+....++..|.
T Consensus 30 ~l~~e~~elkd~~lR~~Aef 49 (178)
T PRK14161 30 ALKAEIEELKDKLIRTTAEI 49 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 227
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=30.48 E-value=97 Score=16.92 Aligned_cols=20 Identities=20% Similarity=0.663 Sum_probs=11.8
Q ss_pred CCchHH-HHHHHHHHHHHHHH
Q 030828 147 GGVSFI-FVILVGLVGIVLGY 166 (171)
Q Consensus 147 ~G~~~~-~V~~v~ll~~llgy 166 (171)
.||++. .++.+.++++++..
T Consensus 2 ~GfTLiEllial~i~~i~~~~ 22 (26)
T TIGR02532 2 RGFTLIELLVVLAILGILAAI 22 (26)
T ss_pred CceeHHHHHHHHHHHHHHHHH
Confidence 588853 44555566666554
No 228
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.36 E-value=1.7e+02 Score=24.29 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=17.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
.+.+..+-.+..++|..|+.|...+..+|+++
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l 75 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQL 75 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555
No 229
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=30.29 E-value=1.8e+02 Score=19.85 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=20.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
++..++++.-.+|.+|=.+|..+.++.-.++
T Consensus 3 ~lR~~Id~iD~~i~~Ll~~R~~l~~~i~~~K 33 (83)
T TIGR01791 3 ELRQEIEEIDKSILDLIEKRIKIARKIGEIK 33 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777766666665554
No 230
>PF10846 DUF2722: Protein of unknown function (DUF2722); InterPro: IPR021216 This eukaryotic family of proteins has no known function.
Probab=30.29 E-value=98 Score=28.29 Aligned_cols=47 Identities=32% Similarity=0.369 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccCCCCCchHHHHHHHH
Q 030828 109 EARALISKLKDEKNNAVQQNNKLR---QDLELLRREGKKNRGGVSFIFVILVG 158 (171)
Q Consensus 109 ea~a~I~kL~eE~~~~~~q~~~Lq---~El~~lr~~~~~~~~G~~~~~V~~v~ 158 (171)
++--+..+|+-|-...++|.-+|. .++++||... ++|+|.-+|.+||
T Consensus 59 ~al~eai~LK~EQEKTKQEyyRLE~~~~~lelLr~Al---~~gIPp~lIP~LF 108 (416)
T PF10846_consen 59 EALIEAIKLKQEQEKTKQEYYRLEQRNKELELLRTAL---QAGIPPNLIPLLF 108 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCChhhcceee
Confidence 445555667666666777776663 5777887542 3899988888777
No 231
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=29.70 E-value=1.4e+02 Score=22.00 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 030828 153 FVILVGLVGIVLGYVM 168 (171)
Q Consensus 153 ~V~~v~ll~~llgy~~ 168 (171)
.+..++|.+|++|-|.
T Consensus 52 ~~Tgl~L~~~v~gIY~ 67 (100)
T PF09813_consen 52 LLTGLALGAFVVGIYA 67 (100)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4566777777777443
No 232
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=29.65 E-value=39 Score=28.96 Aligned_cols=11 Identities=9% Similarity=0.522 Sum_probs=7.6
Q ss_pred HHHHHHHhcCC
Q 030828 161 GIVLGYVMKKS 171 (171)
Q Consensus 161 ~~llgy~~~~~ 171 (171)
-+||+|++.|+
T Consensus 287 ivLiaYli~Rr 297 (306)
T PF01299_consen 287 IVLIAYLIGRR 297 (306)
T ss_pred HHHHhheeEec
Confidence 34478998875
No 233
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=29.61 E-value=2.5e+02 Score=24.17 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030828 121 KNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 121 ~~~~~~q~~~Lq~El~~lr~~ 141 (171)
++.+.+-+.+|+.+++.|+++
T Consensus 46 ~dEa~~L~~~L~~kl~eLqkk 66 (277)
T PF15030_consen 46 RDEATRLQDELQGKLEELQKK 66 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 234
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=29.58 E-value=17 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhcC
Q 030828 148 GVSFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 148 G~~~~~V~~v~ll~~llgy~~~~ 170 (171)
-=|++|.+=.+|=+.+|||+|.+
T Consensus 66 iESLLFaLQAAiGAgiIgY~lG~ 88 (100)
T PRK02898 66 IESLLFALQAALGAGIIGYILGY 88 (100)
T ss_pred HHHHHHHHHHHHhhhhhheeeee
Confidence 34789999999999999999864
No 235
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=29.50 E-value=1.3e+02 Score=26.78 Aligned_cols=7 Identities=14% Similarity=0.577 Sum_probs=4.3
Q ss_pred CCCchHH
Q 030828 146 RGGVSFI 152 (171)
Q Consensus 146 ~~G~~~~ 152 (171)
..|-|+.
T Consensus 332 sDGaplv 338 (384)
T KOG0972|consen 332 SDGAPLV 338 (384)
T ss_pred cCCchHH
Confidence 3677753
No 236
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=29.44 E-value=1.9e+02 Score=21.69 Aligned_cols=22 Identities=9% Similarity=0.351 Sum_probs=11.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNN 123 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~ 123 (171)
.+......+.+.+..+++++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~dl~~ 35 (132)
T PF07926_consen 14 RLKEQEEDAEEQLQSLREDLES 35 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555443
No 237
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=29.43 E-value=95 Score=22.83 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 030828 152 IFVILVGLVGIVLG 165 (171)
Q Consensus 152 ~~V~~v~ll~~llg 165 (171)
++.+++-|+|+++|
T Consensus 75 ~~tl~~lllGv~~G 88 (100)
T TIGR02230 75 SWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344445555555
No 238
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.32 E-value=1.3e+02 Score=19.54 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030828 122 NNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 122 ~~~~~q~~~Lq~El~~lr~ 140 (171)
..+..+|..|+.+|..++.
T Consensus 32 ~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 32 SKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444566667777766553
No 239
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=29.14 E-value=2.8e+02 Score=26.03 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhccCCC-CCchHHHHHHHHHH
Q 030828 129 NKLRQDLELLRREGKKNR-GGVSFIFVILVGLV 160 (171)
Q Consensus 129 ~~Lq~El~~lr~~~~~~~-~G~~~~~V~~v~ll 160 (171)
+.++..+..+++...+++ .|+|-.|.-.+.-+
T Consensus 421 ~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~ 453 (569)
T PRK04778 421 ERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEV 453 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 333444444444443444 78887776655433
No 240
>PRK14140 heat shock protein GrpE; Provisional
Probab=29.13 E-value=1.7e+02 Score=23.93 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=6.7
Q ss_pred hhhhhHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLK 118 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~ 118 (171)
++.++.+++++|..|+
T Consensus 42 l~~~i~~l~~ei~elk 57 (191)
T PRK14140 42 EQAKIAELEAKLDELE 57 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 241
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=29.08 E-value=2.1e+02 Score=23.59 Aligned_cols=9 Identities=33% Similarity=0.287 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 030828 124 AVQQNNKLR 132 (171)
Q Consensus 124 ~~~q~~~Lq 132 (171)
+..|..+|+
T Consensus 166 aqaQL~~lQ 174 (192)
T PF11180_consen 166 AQAQLRQLQ 174 (192)
T ss_pred HHHHHHHHH
Confidence 333333333
No 242
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=28.87 E-value=60 Score=27.45 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCC
Q 030828 159 LVGIVLGYVMKKS 171 (171)
Q Consensus 159 ll~~llgy~~~~~ 171 (171)
+|||||.|+|+.+
T Consensus 102 ~iGFllty~l~tt 114 (233)
T PF10176_consen 102 WIGFLLTYCLHTT 114 (233)
T ss_pred HHHHHHHHHHhcc
Confidence 7899999999864
No 243
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.74 E-value=3.7e+02 Score=23.76 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q 030828 152 IFVILVGLVGIVLGY 166 (171)
Q Consensus 152 ~~V~~v~ll~~llgy 166 (171)
.++++.+++|+++|.
T Consensus 398 ~~l~~~~~~Gl~lg~ 412 (444)
T TIGR03017 398 LNLVLSIFLGMLLGI 412 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455556666676663
No 244
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.56 E-value=65 Score=23.71 Aligned_cols=20 Identities=15% Similarity=0.507 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q 030828 149 VSFIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~ 168 (171)
+.-.++.+-|++||++||+-
T Consensus 27 ~~q~ilti~aiVg~i~Gf~~ 46 (101)
T KOG4112|consen 27 FQQLILTIGAIVGFIYGFAQ 46 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44466677788888888763
No 245
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.46 E-value=2.9e+02 Score=21.67 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=8.6
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKD 119 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~e 119 (171)
.++......+.+|.+|+.
T Consensus 77 ~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 77 ELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444545555544444
No 246
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.33 E-value=2.1e+02 Score=20.53 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQ 133 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~ 133 (171)
+.+++++..++..|++|...+..+...-+.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444443
No 247
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.27 E-value=1.8e+02 Score=23.22 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=20.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
.++.++.+....+..|..|+..+..+...++++..
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666555555555533
No 248
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=28.12 E-value=3.4e+02 Score=22.33 Aligned_cols=10 Identities=40% Similarity=0.810 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 030828 131 LRQDLELLRR 140 (171)
Q Consensus 131 Lq~El~~lr~ 140 (171)
|+.|+.-+++
T Consensus 79 L~~el~~~kR 88 (195)
T PF01616_consen 79 LKHELRKLKR 88 (195)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 249
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.10 E-value=1.8e+02 Score=24.00 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
.+..++..+..++..|+..++.+.++....+++++.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELAS 88 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433333333333
No 250
>PTZ00478 Sec superfamily; Provisional
Probab=28.09 E-value=1.3e+02 Score=21.39 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH----HHHHhc
Q 030828 151 FIFVILVGLVGIV----LGYVMK 169 (171)
Q Consensus 151 ~~~V~~v~ll~~l----lgy~~~ 169 (171)
++-++.++.+||+ |||+++
T Consensus 45 f~kiakat~iGf~imG~IGy~IK 67 (81)
T PTZ00478 45 YTNIAYACSVGFFIMGFIGYSIK 67 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444444 567665
No 251
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=28.09 E-value=83 Score=16.48 Aligned_cols=18 Identities=17% Similarity=0.595 Sum_probs=10.9
Q ss_pred CCchHH-HHHHHHHHHHHH
Q 030828 147 GGVSFI-FVILVGLVGIVL 164 (171)
Q Consensus 147 ~G~~~~-~V~~v~ll~~ll 164 (171)
.||++. .++.++++|++.
T Consensus 1 ~GFTLiE~~v~l~i~~i~~ 19 (20)
T PF07963_consen 1 KGFTLIELLVALAIIAILA 19 (20)
T ss_pred CceeHHHHHHHHHHHHHHh
Confidence 478853 445666666653
No 252
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.00 E-value=2.1e+02 Score=20.69 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=26.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
.+++.+.......|.+|.+....+..+-..+++++.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888888877777776666666554
No 253
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=28.00 E-value=2e+02 Score=19.54 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 110 ARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 110 a~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
.+.+|..+-.++-.++.+|..+-.+...+
T Consensus 5 lR~~ID~ID~~ii~LL~~R~~~~~~i~~~ 33 (74)
T TIGR01808 5 LREEIDRLDAEILALVKRRAEISQAIGKA 33 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 254
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=27.69 E-value=2.7e+02 Score=22.55 Aligned_cols=23 Identities=35% Similarity=0.506 Sum_probs=10.1
Q ss_pred CchHHH-HHHHHHHHHHHHHHhcC
Q 030828 148 GVSFIF-VILVGLVGIVLGYVMKK 170 (171)
Q Consensus 148 G~~~~~-V~~v~ll~~llgy~~~~ 170 (171)
|+.+++ +++++++++++.|+|+|
T Consensus 269 g~~~~~~~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 269 GYFFVIILGLMILVAILLYWWFKR 292 (292)
T ss_dssp -SHHH--HHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHheeC
Confidence 344443 34444455555555554
No 255
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=27.60 E-value=42 Score=21.35 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 030828 155 ILVGLVGIVLGYV 167 (171)
Q Consensus 155 ~~v~ll~~llgy~ 167 (171)
++..++|.++||-
T Consensus 9 ~~~l~iGlmIGY~ 21 (47)
T PF11772_consen 9 ILALAIGLMIGYG 21 (47)
T ss_pred HHHHHHHHHeeee
Confidence 3334444555553
No 256
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=27.56 E-value=76 Score=22.35 Aligned_cols=23 Identities=43% Similarity=0.738 Sum_probs=17.5
Q ss_pred ch-HHHHHHHHHHHHHHHHHhcCC
Q 030828 149 VS-FIFVILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 149 ~~-~~~V~~v~ll~~llgy~~~~~ 171 (171)
+| ++.+++++++|..+|+.|-++
T Consensus 50 lP~~lll~~~~~vg~f~g~vmik~ 73 (78)
T PF07297_consen 50 LPIFLLLLGLSGVGTFLGYVMIKS 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45 367788888999999988653
No 257
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=27.55 E-value=1.5e+02 Score=23.75 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=24.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
++.-.|.+.++.++.+|+..+++-..........|+|+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45667788888888888876644433333444456655
No 258
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=27.51 E-value=64 Score=26.46 Aligned_cols=21 Identities=38% Similarity=1.037 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 030828 151 FIFVILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~~~ 171 (171)
+.+++..|+.|+++||+++++
T Consensus 61 ~~~~~~~~l~g~~lg~~~~~~ 81 (290)
T PF09991_consen 61 LFYLLFFGLPGLVLGYLLRKK 81 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 567788899999999998764
No 259
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=27.44 E-value=3e+02 Score=21.43 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=26.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
....+.|+......+..++.++.....+..+++.++..+
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777777666666666665533
No 260
>PF08040 NADH_oxidored: MNLL subunit; InterPro: IPR012575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the MNLL subunits of NADH:ubiquinone oxidoreductase complex []. MNLL subunit is one of the many subunits found in the complex and it contains a mitochondrial import sequence. However, the role of MNLL subunit is unclear [].; GO: 0003954 NADH dehydrogenase activity, 0005739 mitochondrion
Probab=27.43 E-value=32 Score=23.06 Aligned_cols=16 Identities=44% Similarity=0.750 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhcC
Q 030828 154 VILVGLVGIVLGYVMKK 170 (171)
Q Consensus 154 V~~v~ll~~llgy~~~~ 170 (171)
-+++=+ ||+||||+-+
T Consensus 14 ~~~vPl-gf~iG~yLDr 29 (59)
T PF08040_consen 14 WILVPL-GFVIGCYLDR 29 (59)
T ss_pred HHHHhh-Hhhheeeecc
Confidence 344444 9999998743
No 261
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=27.39 E-value=3.2e+02 Score=22.98 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=19.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
..+..+.+.+..|..|..++.++..+|..|...+.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence 44555555566666666666666555655544443
No 262
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.26 E-value=60 Score=24.53 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=17.4
Q ss_pred CCchHHHHHHHHHHHHHHHHH
Q 030828 147 GGVSFIFVILVGLVGIVLGYV 167 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~llgy~ 167 (171)
.|-+.|+.++.-||||..|.+
T Consensus 70 agTsPwglIv~lllGf~AG~l 90 (116)
T COG5336 70 AGTSPWGLIVFLLLGFGAGVL 90 (116)
T ss_pred cCCCcHHHHHHHHHHHHHHHH
Confidence 356779999999999999965
No 263
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=27.21 E-value=4.7e+02 Score=25.14 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 030828 152 IFVILVGLVGIVLG 165 (171)
Q Consensus 152 ~~V~~v~ll~~llg 165 (171)
+++++.+++|+++|
T Consensus 432 ~~l~~~~~~gl~lg 445 (754)
T TIGR01005 432 PIVGLAAVLGLLLG 445 (754)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555554
No 264
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=27.19 E-value=2.1e+02 Score=22.95 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=23.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
...++..+.++...+.+|+..+..+......++.+...|
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777666666666666665544433
No 265
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=27.07 E-value=82 Score=21.11 Aligned_cols=10 Identities=40% Similarity=1.148 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 030828 155 ILVGLVGIVL 164 (171)
Q Consensus 155 ~~v~ll~~ll 164 (171)
+++|++||+|
T Consensus 40 ~i~G~IGf~I 49 (61)
T TIGR00327 40 IIVGIIGYII 49 (61)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 266
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=27.05 E-value=4.4e+02 Score=23.19 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=5.6
Q ss_pred HHHHHHHHHH-HHh
Q 030828 156 LVGLVGIVLG-YVM 168 (171)
Q Consensus 156 ~v~ll~~llg-y~~ 168 (171)
+.|=++.++| |++
T Consensus 114 l~~Siss~iG~YiL 127 (299)
T PF05884_consen 114 LGFSISSFIGGYIL 127 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 3333444444 544
No 267
>PRK07248 hypothetical protein; Provisional
Probab=27.03 E-value=2.2e+02 Score=19.66 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=20.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
+++..++++.-.+|.+|=.+|..+..+.-.++
T Consensus 4 ~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K 35 (87)
T PRK07248 4 EEIRQEIDQIDDQLVALLEKRMALVEQVVAYK 35 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777666666666665554
No 268
>PF12438 DUF3679: Protein of unknown function (DUF3679) ; InterPro: IPR020534 This entry contains proteins with no known function.
Probab=26.89 E-value=57 Score=21.60 Aligned_cols=14 Identities=29% Similarity=0.871 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q 030828 152 IFVILVGLVGIVLG 165 (171)
Q Consensus 152 ~~V~~v~ll~~llg 165 (171)
...++++|+++|+|
T Consensus 3 ~~~~~il~~gVl~G 16 (56)
T PF12438_consen 3 ILLVIILFFGVLLG 16 (56)
T ss_pred hHHHHHHHHHHHHh
Confidence 45677888999987
No 269
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.88 E-value=2.2e+02 Score=22.69 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=8.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
++.++.+-...|..|+.++..+..+...+
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l 135 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDL 135 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333333
No 270
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=26.63 E-value=56 Score=25.51 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 030828 152 IFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~~ 170 (171)
+.+++.+++|+.+||++-|
T Consensus 104 ~~~~~~~~~g~~~g~~~~r 122 (154)
T PRK10862 104 LAALCGALLGGVGGFLLAR 122 (154)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777788888877643
No 271
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.58 E-value=1.8e+02 Score=24.94 Aligned_cols=36 Identities=25% Similarity=0.125 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q 030828 106 KSTEARALISKLKDEKNNAVQQNN----KLRQDLELLRRE 141 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~----~Lq~El~~lr~~ 141 (171)
.+.++.++-.+|++|+..+.++.+ .+++|.++||+.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777655522222 266777778764
No 272
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.50 E-value=1.9e+02 Score=24.67 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=27.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAV----QQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~----~q~~~Lq~El~~lr~~ 141 (171)
...+++++.+..++|..|++..++.. .-...++.+++.||..
T Consensus 59 ~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~ 104 (247)
T COG3879 59 LRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRML 104 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 44567777777788888877777766 3334445566666654
No 273
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=26.46 E-value=2.6e+02 Score=20.63 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=30.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+...+..+-+....|.+|..+...+....+++.++|+.+..+
T Consensus 45 V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~q 86 (116)
T PF05064_consen 45 VNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQ 86 (116)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777888888888888888888888888887777765543
No 274
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=26.27 E-value=2.5e+02 Score=21.82 Aligned_cols=21 Identities=38% Similarity=0.435 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030828 119 DEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 119 eE~~~~~~q~~~Lq~El~~lr 139 (171)
.++..+.+|..+|++|...++
T Consensus 81 ~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 81 KEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 275
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.25 E-value=2e+02 Score=19.01 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=27.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
+..|..|.+.....|..|+.+...+..|-.+.-+.|+-.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888888888888877777777666666666543
No 276
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=26.13 E-value=90 Score=21.59 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 030828 111 RALISKLKDEKNNA 124 (171)
Q Consensus 111 ~a~I~kL~eE~~~~ 124 (171)
.-.|++|..|++.+
T Consensus 49 ~RViArl~kErd~a 62 (70)
T PF08606_consen 49 CRVIARLLKERDEA 62 (70)
T ss_pred HHHHHHHHHhHHHH
Confidence 33444444444443
No 277
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.12 E-value=1.8e+02 Score=28.07 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=3.3
Q ss_pred EeeCCCC
Q 030828 22 VKTNDGT 28 (171)
Q Consensus 22 v~v~~~~ 28 (171)
|-++||+
T Consensus 247 VGIDPGi 253 (652)
T COG2433 247 VGIDPGI 253 (652)
T ss_pred EEeCCCc
Confidence 4445554
No 278
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=26.10 E-value=2.8e+02 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=12.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEK 121 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~ 121 (171)
++.|+.++.+...++..|+.|.
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665554
No 279
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=26.01 E-value=85 Score=20.76 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHH
Q 030828 149 VSFIFVILVGLVGIVLGY 166 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy 166 (171)
||++.|++|+--||++..
T Consensus 29 ~PiL~v~~Vg~YGF~VWm 46 (56)
T PF06796_consen 29 FPILAVAFVGGYGFIVWM 46 (56)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788999999999998873
No 280
>PHA02047 phage lambda Rz1-like protein
Probab=26.00 E-value=2.7e+02 Score=20.51 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=35.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCCchHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL-LRREGKKNRGGVSFIFVILVG 158 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~-lr~~~~~~~~G~~~~~V~~v~ 158 (171)
.+.+.++|.-++..|..+++..+.+.+..++-.+|+.. |.+...=+..-+|.-++=.+|
T Consensus 36 a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD~PVPpaV~~~Lc 95 (101)
T PHA02047 36 AKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWADRPVPPAVVDSLC 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHHHHHH
Confidence 55788889999999999888877766555555555542 322211112446655554444
No 281
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=25.85 E-value=1.8e+02 Score=23.12 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El 135 (171)
+..+......|..|.+++.....-++.++.|+
T Consensus 122 ~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 122 EAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333334443
No 282
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=25.73 E-value=2.1e+02 Score=23.19 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
.|+++..+.+....+...+.....++|+.|
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L 60 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRL 60 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544444444444444444444444444
No 283
>PRK14148 heat shock protein GrpE; Provisional
Probab=25.65 E-value=2.2e+02 Score=23.24 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=6.4
Q ss_pred hhhhhHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKD 119 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~e 119 (171)
+++++.+.+....++..
T Consensus 52 l~~e~~elkd~~lR~~A 68 (195)
T PRK14148 52 LEDSCDQFKDEALRAKA 68 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 284
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=25.56 E-value=2.8e+02 Score=22.79 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 105 DKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 105 ~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+.++.+-++.++++.. ....+++++|+..|-++
T Consensus 58 ~km~~iqP~~~~i~~k~---k~d~~~~~~e~~~Lyk~ 91 (223)
T PRK00145 58 LRMNEIQPEIKKLQAKY---KNDPQKLQQEMMKLYKE 91 (223)
T ss_pred HHHHHhhHHHHHHHHHH---HccHHHHHHHHHHHHHH
Confidence 45555566666666543 23345667777766655
No 285
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=25.55 E-value=1e+02 Score=28.66 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030828 111 RALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 111 ~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
+.+|..|.........||+.|+
T Consensus 271 keYid~LE~rv~~~taeNqeL~ 292 (472)
T KOG0709|consen 271 KEYIDGLESRVSAFTAENQELQ 292 (472)
T ss_pred hhHHHHHhhhhhhcccCcHHHH
Confidence 4444444444444444555554
No 286
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=25.52 E-value=75 Score=22.15 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=9.8
Q ss_pred CCchHHHHHHHHHHHHH
Q 030828 147 GGVSFIFVILVGLVGIV 163 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~l 163 (171)
+|+..|.++++.++.+|
T Consensus 2 ~g~g~~elliIl~i~ll 18 (74)
T PRK01833 2 GGISIWQLLIIVAIIVL 18 (74)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 35666666555555555
No 287
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=25.30 E-value=1.6e+02 Score=27.99 Aligned_cols=38 Identities=3% Similarity=0.006 Sum_probs=30.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
++....++++++.++..+++|+.+...|+.+.++|...
T Consensus 200 y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~sk 237 (596)
T KOG4360|consen 200 YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSK 237 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788999999999998888888888887776553
No 288
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.21 E-value=2.7e+02 Score=23.07 Aligned_cols=14 Identities=0% Similarity=0.207 Sum_probs=8.4
Q ss_pred CCCceeEEEEEeeC
Q 030828 12 QCKDKFLLQSVKTN 25 (171)
Q Consensus 12 kckDKFLVQSv~v~ 25 (171)
.--+..+|.+..+.
T Consensus 42 ~~~~rkii~~~~l~ 55 (262)
T PF14257_consen 42 ASAQRKIIKTADLS 55 (262)
T ss_pred CcccceEEEEEEEE
Confidence 34456677766655
No 289
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.15 E-value=60 Score=26.20 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=17.8
Q ss_pred CchHHHHHHHHHHHHHHHHHhcC
Q 030828 148 GVSFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 148 G~~~~~V~~v~ll~~llgy~~~~ 170 (171)
-+|.+..+++|.+++.+.||+++
T Consensus 177 ~l~~~~~iiig~i~~~~~~~lkk 199 (206)
T PF06570_consen 177 VLPPWVYIIIGVIAFALRFYLKK 199 (206)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888775
No 290
>PHA02849 putative transmembrane protein; Provisional
Probab=25.04 E-value=87 Score=22.22 Aligned_cols=18 Identities=28% Similarity=0.803 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 030828 152 IFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~ 169 (171)
.||+.+|++.|+|=|+.+
T Consensus 22 v~v~vI~i~~flLlyLvk 39 (82)
T PHA02849 22 VFVLVISFLAFMLLYLIK 39 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667778888888888765
No 291
>PRK14158 heat shock protein GrpE; Provisional
Probab=24.99 E-value=2.3e+02 Score=23.14 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=3.6
Q ss_pred hhHHHHHHHH
Q 030828 106 KSTEARALIS 115 (171)
Q Consensus 106 kl~ea~a~I~ 115 (171)
++.++++++.
T Consensus 48 ~l~~le~e~~ 57 (194)
T PRK14158 48 ALAAKEAEAA 57 (194)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 292
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=24.91 E-value=92 Score=21.28 Aligned_cols=17 Identities=41% Similarity=0.725 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 030828 152 IFVILVGLVGIVLGYVM 168 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~ 168 (171)
+.=+++.++++.|||+.
T Consensus 34 q~~ll~vllaIalGylv 50 (68)
T TIGR02327 34 QLRVLVVLIAIALGYTV 50 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455566666666654
No 293
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=24.89 E-value=3.4e+02 Score=21.25 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=22.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
..+.+.++-+.++.+.+.|...+.++.+...++-+.+
T Consensus 70 ~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~ 106 (157)
T PF14235_consen 70 AYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHA 106 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4556666666677777776666666666555544433
No 294
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.88 E-value=2.4e+02 Score=19.55 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=22.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
...++-.+.+..+...++.. +...++|+.|.+++..|-+
T Consensus 26 ~~hm~~e~~~L~~~~~~~d~--s~~~~~R~~L~~~l~~lv~ 64 (79)
T PF06657_consen 26 FGHMKMEHQELQDEYKQMDP--SLGRRKRRDLEQELEELVK 64 (79)
T ss_pred HHHHHHHHHHHHHHHHhccc--ccChHHHHHHHHHHHHHHH
Confidence 34455555555555555543 2356777777777665443
No 295
>PRK08126 hypothetical protein; Provisional
Probab=24.83 E-value=1.7e+02 Score=26.67 Aligned_cols=23 Identities=9% Similarity=-0.205 Sum_probs=15.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhc
Q 030828 147 GGVSFIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~llgy~~~ 169 (171)
..+|+|.+++++.+.++..|+.+
T Consensus 241 ~~~P~W~~~~~~~l~l~~~y~~~ 263 (432)
T PRK08126 241 RDVPVWATAAVLSLILLGLFGWY 263 (432)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHH
Confidence 35899998777766666555543
No 296
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.68 E-value=1.8e+02 Score=21.70 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=30.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
=+|+.-|+...+.+-..+||.-.++.||+.|.|=.+.|-
T Consensus 66 LELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 66 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 367778888888888888888888888888887666543
No 297
>PRK14762 membrane protein; Provisional
Probab=24.59 E-value=96 Score=17.35 Aligned_cols=14 Identities=21% Similarity=0.593 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 030828 151 FIFVILVGLVGIVL 164 (171)
Q Consensus 151 ~~~V~~v~ll~~ll 164 (171)
+|.+++++|+|.|.
T Consensus 5 lw~i~iifligllv 18 (27)
T PRK14762 5 LWAVLIIFLIGLLV 18 (27)
T ss_pred HHHHHHHHHHHHHH
Confidence 57777777777764
No 298
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.58 E-value=1.7e+02 Score=22.89 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=22.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 030828 99 ERIEHQDKSTEARALISKLKD---EKNNAVQQNNKLR 132 (171)
Q Consensus 99 ~~~~l~~kl~ea~a~I~kL~e---E~~~~~~q~~~Lq 132 (171)
.++.++.+|.++..+|..|+. ....+..+-..|+
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq 64 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQ 64 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 366788888888888888876 3333444444444
No 299
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.45 E-value=2e+02 Score=26.27 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
..++.+.+..|..+++.+.+.++++..|+
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~ 364 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVK 364 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443
No 300
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=24.35 E-value=85 Score=17.61 Aligned_cols=14 Identities=29% Similarity=0.422 Sum_probs=5.8
Q ss_pred chHHHHHHHHHHHH
Q 030828 149 VSFIFVILVGLVGI 162 (171)
Q Consensus 149 ~~~~~V~~v~ll~~ 162 (171)
||...+.+++++|+
T Consensus 4 F~~i~l~I~all~i 17 (26)
T TIGR03024 4 FSTIALPIIALLAI 17 (26)
T ss_pred CcchHHHHHHHHHH
Confidence 44223344444444
No 301
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=24.28 E-value=2.3e+02 Score=20.18 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=21.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
-++.++......+.+|.+++.....+...++..++.+
T Consensus 81 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 81 FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555555555555443
No 302
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=24.14 E-value=24 Score=29.43 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 030828 151 FIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~ 169 (171)
+.++++|+++|.-.||||+
T Consensus 163 ll~lllv~l~gGGa~yYfK 181 (218)
T PF14283_consen 163 LLLLLLVALIGGGAYYYFK 181 (218)
T ss_pred HHHHHHHHHhhcceEEEEE
Confidence 4555555565554556665
No 303
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.12 E-value=2.8e+02 Score=27.03 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
++.+-.+.+.+|.+|+.|+...-.+...+.+|+..||.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666665555555555555555554
No 304
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=23.98 E-value=61 Score=22.87 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCCceeEEEEEeeCCCCCccccchhhhccccCce--eeEEEeEEEEeCCCCCCCCC
Q 030828 12 QCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHV--VEECKLRVIYVSPPQPPSPV 65 (171)
Q Consensus 12 kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~--i~e~KLrVv~~~p~~~~s~~ 65 (171)
.--|++-|.+-+..-+...-.+.-.||.+.++.. .-+.+..+||+.....+.|.
T Consensus 58 ~~~d~~~v~~~~~~~~~~s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~~~r~~~~ 113 (121)
T PF13279_consen 58 RFGDRLEVETRVEEIGGKSFRFEQEIFRPADGKGELAATGRTVMVFVDYKTRSVPI 113 (121)
T ss_dssp BTTSEEEEEEEEEEEESSEEEEEEEEEECSTTEEEEEEEEEEEEEEEETTTCE-B-
T ss_pred cCCCEEEEEEEEEEECCcEEEEEEEEEEcCCCceEEEEEEEEEEEEEeCCCCcCCC
Confidence 3568888888887755444455557777445554 88999999999775533343
No 305
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=23.96 E-value=1e+02 Score=18.61 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=13.2
Q ss_pred chHHHHHHHHHH--HHHHHHHh
Q 030828 149 VSFIFVILVGLV--GIVLGYVM 168 (171)
Q Consensus 149 ~~~~~V~~v~ll--~~llgy~~ 168 (171)
+|..+|.++||+ ++.+|.+|
T Consensus 6 LPsI~VPlVGlvfPai~Ma~lf 27 (36)
T CHL00186 6 LPSILVPLVGLVFPAIAMASLF 27 (36)
T ss_pred CchhHHhHHHHHHHHHHHHHHH
Confidence 566788888887 45555554
No 306
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=23.67 E-value=87 Score=21.57 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcC
Q 030828 150 SFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 150 ~~~~V~~v~ll~~llgy~~~~ 170 (171)
=+..-++++++.+|.+.+|+.
T Consensus 37 Gvi~gi~~~~lt~ltN~YFK~ 57 (68)
T PF04971_consen 37 GVIGGIFFGLLTYLTNLYFKI 57 (68)
T ss_pred HHHHHHHHHHHHHHhHhhhhh
Confidence 345557778888999888775
No 307
>PHA03255 BDLF3; Provisional
Probab=23.47 E-value=90 Score=25.58 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=16.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHh
Q 030828 147 GGVSFIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~llgy~~ 168 (171)
-|.|+|-.++|+|-.++|-.+|
T Consensus 180 ~glplwtlvfvgltflmlilif 201 (234)
T PHA03255 180 YGLPLWTLVFVGLTFLMLILIF 201 (234)
T ss_pred cCchHHHHHHHHHHHHHHHHHH
Confidence 7999999988887666554443
No 308
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.42 E-value=2.8e+02 Score=22.26 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030828 122 NNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 122 ~~~~~q~~~Lq~El~~lr 139 (171)
..++++.+.|++++..|+
T Consensus 106 ~~~l~~l~~l~~~~~~l~ 123 (188)
T PF03962_consen 106 EELLEELEELKKELKELK 123 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 309
>PRK06034 hypothetical protein; Provisional
Probab=23.32 E-value=4.9e+02 Score=22.53 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=23.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
++++..++++.-.+|.+|=+||..+.++.-+++
T Consensus 11 L~eLR~eID~ID~eLl~LL~eR~~lv~~Va~~K 43 (279)
T PRK06034 11 LAELRWEIDAIDEELHQLLMERGDIIDRLIAVK 43 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777778887888887777777766665554
No 310
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.31 E-value=2.8e+02 Score=24.52 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030828 115 SKLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 115 ~kL~eE~~~~~~q~~~Lq~El 135 (171)
..|+.|+......++.|+.++
T Consensus 37 ~~Lk~El~~ek~~~~~L~~e~ 57 (310)
T PF09755_consen 37 RVLKRELETEKARCKHLQEEN 57 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 311
>COG4836 Predicted membrane protein [Function unknown]
Probab=23.29 E-value=1.1e+02 Score=21.38 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=14.7
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q 030828 148 GVSFIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 148 G~~~~~V~~v~ll~~llgy~~ 168 (171)
|-..+.-+++.+++++|||.+
T Consensus 38 ~~~tQa~llmI~vtI~lg~~v 58 (77)
T COG4836 38 GKVTQARLLMIFVTIALGYAV 58 (77)
T ss_pred CchhHHHHHHHHHHHHHHHHH
Confidence 445566677778888888754
No 312
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.17 E-value=2.6e+02 Score=20.06 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=20.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
.++.+.......+.+|++++.....+-..++..+.
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666555555555444
No 313
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=23.13 E-value=2.5e+02 Score=19.07 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=19.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
++..++++.-.+|..|=.+|..+.++.-.++
T Consensus 3 ~lR~~Id~iD~~i~~Ll~~R~~~~~~i~~~K 33 (81)
T TIGR01805 3 LIRKKIDEIDDKLVVLFEERMEVVKEIAAYK 33 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777666666666655554
No 314
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=23.13 E-value=2.5e+02 Score=21.31 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=11.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNA 124 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~ 124 (171)
+++.++.++..++..|+++....
T Consensus 15 ~~~~~l~~l~~~~~~l~~~~~r~ 37 (165)
T PF01025_consen 15 ELEEELEELEKEIEELKERLLRL 37 (165)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444333
No 315
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=23.11 E-value=69 Score=20.42 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q 030828 153 FVILVGLVGIVLG 165 (171)
Q Consensus 153 ~V~~v~ll~~llg 165 (171)
+.+++++++|++|
T Consensus 51 iL~~~a~is~~~~ 63 (64)
T smart00831 51 ILLAAAVLSALLG 63 (64)
T ss_pred HHHHHHHHHHHHc
Confidence 3345566666665
No 316
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.11 E-value=2.6e+02 Score=19.21 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=21.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
.++.-+++.+..+..++++.+....|...+-++
T Consensus 23 ~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~ 55 (90)
T PF06103_consen 23 KLKKTLDEVNKTIDTLQEQVDPITKEINDLLHN 55 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455566777777777777776666666655433
No 317
>PHA03029 hypothetical protein; Provisional
Probab=23.01 E-value=1e+02 Score=21.81 Aligned_cols=18 Identities=17% Similarity=0.862 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 030828 152 IFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 152 ~~V~~v~ll~~llgy~~~ 169 (171)
-++++++++|++-||++.
T Consensus 16 yiilila~igiiwg~lls 33 (92)
T PHA03029 16 YIILILAIIGIIWGFLLS 33 (92)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788899999999873
No 318
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=23.00 E-value=1.3e+02 Score=25.81 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q 030828 149 VSFIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~ 168 (171)
.+.++.+++.+++++|+|.|
T Consensus 171 ms~~~~l~l~~~sL~i~y~f 190 (267)
T PF09622_consen 171 MSPWHALALVLLSLAIMYLF 190 (267)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888876
No 319
>PF05776 Papilloma_E5A: Papillomavirus E5A protein; InterPro: IPR008736 Human papillomaviruses (HPVs) are epitheliotropic viruses, and their life cycle is intimately linked to the stratification and differentiation state of the host epithelial tissues. The kinetics of E5a protein expression during the complete viral life cycle has been studied and the highest level was found to be coincidental with the onset of virion morphogenesis [].
Probab=23.00 E-value=1.1e+02 Score=21.91 Aligned_cols=17 Identities=24% Similarity=0.428 Sum_probs=14.5
Q ss_pred chHHHHHHHHHHHHHHH
Q 030828 149 VSFIFVILVGLVGIVLG 165 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llg 165 (171)
.|+.+++.||++|+++-
T Consensus 18 LP~vIA~~VC~vSIili 34 (91)
T PF05776_consen 18 LPVVIALTVCFVSIILI 34 (91)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68899999999999854
No 320
>KOG4040 consensus NADH:ubiquinone oxidoreductase, NDUFB8/ASHI subunit [Energy production and conversion]
Probab=23.00 E-value=84 Score=25.35 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=13.9
Q ss_pred CchHHHHHHHHHHHHHHH
Q 030828 148 GVSFIFVILVGLVGIVLG 165 (171)
Q Consensus 148 G~~~~~V~~v~ll~~llg 165 (171)
..+-|.++++||+||+-+
T Consensus 124 ~y~~w~~~~mcl~g~~~~ 141 (186)
T KOG4040|consen 124 DYTTWNSIVMCLRGLVPM 141 (186)
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 355689999999998744
No 321
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=22.89 E-value=2.3e+02 Score=20.32 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQ 127 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q 127 (171)
++.+.++..+++..|+.|......|
T Consensus 28 a~~~~~kL~~en~qlk~Ek~~~~~q 52 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKAVAETQ 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666665444333
No 322
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=22.88 E-value=1.1e+02 Score=19.54 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.2
Q ss_pred chHHHHHHHHHHHHHHHH
Q 030828 149 VSFIFVILVGLVGIVLGY 166 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy 166 (171)
||++.|++|+--||++..
T Consensus 21 ~PiLsV~~Vg~YGF~vWm 38 (47)
T TIGR02972 21 FPILSVAGIGGYGFIIWM 38 (47)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788889999999998873
No 323
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=22.80 E-value=1.8e+02 Score=21.21 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=28.0
Q ss_pred hhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 99 ERIEHQDKS-TEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 99 ~~~~l~~kl-~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
++++|.+.| .||...++.-+.++..+...|..|.+++.
T Consensus 23 ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~ 61 (100)
T PF06428_consen 23 ELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLK 61 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777 88888888887777777777777765544
No 324
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=22.57 E-value=2.5e+02 Score=26.25 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=24.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
...+..|-.+|..++.+|+-.++.++.+.+.||.+++
T Consensus 455 ~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE 491 (507)
T PF05600_consen 455 REDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIE 491 (507)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3345556666667777777766777777777766555
No 325
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.57 E-value=3e+02 Score=21.11 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=11.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNN 123 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~ 123 (171)
.++.+|+.+...|..|++|...
T Consensus 31 ~LE~qL~~~~~~l~lLq~e~~~ 52 (160)
T PF13094_consen 31 ALERQLAANLHQLELLQEEIEK 52 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 326
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=22.54 E-value=3.9e+02 Score=21.10 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=6.2
Q ss_pred hhhhHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLK 118 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~ 118 (171)
+.++.+++.++..|.
T Consensus 63 ~~~l~~~~~el~~le 77 (180)
T PF04678_consen 63 RKRLEELRQELAPLE 77 (180)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 327
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=22.48 E-value=1.1e+02 Score=21.46 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=6.6
Q ss_pred CCchHHHH
Q 030828 147 GGVSFIFV 154 (171)
Q Consensus 147 ~G~~~~~V 154 (171)
-|+|+||.
T Consensus 40 ~GlPlWF~ 47 (80)
T PF06196_consen 40 FGLPLWFF 47 (80)
T ss_pred cCCcHHHH
Confidence 59998876
No 328
>PRK14127 cell division protein GpsB; Provisional
Probab=22.43 E-value=3.1e+02 Score=20.37 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
-..+.....++..|++++..+..+...++..+.
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455555666666666666666665655444
No 329
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.43 E-value=2.7e+02 Score=19.26 Aligned_cols=17 Identities=35% Similarity=0.302 Sum_probs=14.3
Q ss_pred hhhhhhhHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKL 117 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL 117 (171)
+.++-|+..|++.|..|
T Consensus 31 ~~lk~Klq~ar~~i~~l 47 (83)
T PF07544_consen 31 GSLKHKLQKARAAIREL 47 (83)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 47889999999998885
No 330
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=22.33 E-value=1.7e+02 Score=25.81 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
|-.-+.+++....+|+.|...+.+.-..++.+...||.+
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~ 108 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREK 108 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 444456666777777777766666666666666666654
No 331
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=22.29 E-value=2.2e+02 Score=25.18 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=24.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
+++.+....++.+..|..+++...++..+++++++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 12 ELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666666666666666667677777777766655
No 332
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=22.27 E-value=2.2e+02 Score=25.60 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=16.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
++++.++++.-.+|.+|=++|..+.++--+++
T Consensus 8 ~~lR~~ID~ID~~ii~Ll~~R~~~~~~I~~~K 39 (386)
T PRK10622 8 LALREKISALDEKLLALLAERRELAVEVAKAK 39 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555444443
No 333
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=22.23 E-value=2.3e+02 Score=19.29 Aligned_cols=34 Identities=26% Similarity=0.586 Sum_probs=14.6
Q ss_pred HHHHHHHHhccCCC--CCchHHHHHHHHHHHHHHHH
Q 030828 133 QDLELLRREGKKNR--GGVSFIFVILVGLVGIVLGY 166 (171)
Q Consensus 133 ~El~~lr~~~~~~~--~G~~~~~V~~v~ll~~llgy 166 (171)
+|...+|.-.-++. ...-+...++++++|+++|+
T Consensus 28 ~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~ 63 (121)
T PF02687_consen 28 REIAILRALGASKRQIRKMFLYEALLIALIGILIGI 63 (121)
T ss_pred HHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45666654422221 22223334444555555443
No 334
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=22.22 E-value=80 Score=25.76 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=14.4
Q ss_pred CCchH--HHHHHHHHHHHH-HHHHhcC
Q 030828 147 GGVSF--IFVILVGLVGIV-LGYVMKK 170 (171)
Q Consensus 147 ~G~~~--~~V~~v~ll~~l-lgy~~~~ 170 (171)
+|-|| -+|+.+||++|+ ++|=|.+
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 44444 677888888776 3444443
No 335
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=22.18 E-value=3.6e+02 Score=22.77 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=14.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHh
Q 030828 147 GGVSFIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~llgy~~ 168 (171)
..|.-+++++.+=++|++|.+|
T Consensus 75 ~~f~r~~lAlAASVAFv~Gl~~ 96 (232)
T PF11859_consen 75 PRFARWHLALAASVAFVVGLSF 96 (232)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 4466667777777777777554
No 336
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=22.06 E-value=2.9e+02 Score=22.99 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=26.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
+.+++.++.+++..+...+..-..++.++...|.|+..
T Consensus 41 i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~ 78 (207)
T PF05546_consen 41 IEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNE 78 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777767777777777777663
No 337
>PRK06443 chorismate mutase; Validated
Probab=22.03 E-value=2.6e+02 Score=22.74 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=17.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
+++..++++.-.+|.+|=++|..+.++.-+.
T Consensus 8 eeLR~eID~ID~eIL~LL~kRm~la~eIg~~ 38 (177)
T PRK06443 8 EDLRSEILENTMDIIELIEKRRELARMIGII 38 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666555555555444
No 338
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=22.02 E-value=1.3e+02 Score=18.23 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH-HHh
Q 030828 152 IFVILVGLVGIVLG-YVM 168 (171)
Q Consensus 152 ~~V~~v~ll~~llg-y~~ 168 (171)
|-.+++++++++.. |||
T Consensus 19 ~GLllifvl~vLFssyff 36 (37)
T PF02419_consen 19 WGLLLIFVLAVLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhc
Confidence 66677888888866 655
No 339
>PRK14162 heat shock protein GrpE; Provisional
Probab=22.00 E-value=2.7e+02 Score=22.72 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAV 125 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~ 125 (171)
.++.++.+.+....++..|...++
T Consensus 50 ~l~~e~~elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 50 DLKAKNKDLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544443
No 340
>PRK14139 heat shock protein GrpE; Provisional
Probab=21.89 E-value=2.8e+02 Score=22.47 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=7.5
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEK 121 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~ 121 (171)
++.++.+.+....++..|.
T Consensus 44 le~e~~elkd~~lR~~Aef 62 (185)
T PRK14139 44 AEAKAAELQDSFLRAKAET 62 (185)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444443333433333
No 341
>PRK07033 hypothetical protein; Provisional
Probab=21.89 E-value=2e+02 Score=26.16 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=16.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhc
Q 030828 148 GVSFIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 148 G~~~~~V~~v~ll~~llgy~~~ 169 (171)
.+|+|.+++++++.+++.|+.+
T Consensus 227 ~vP~W~~~~~~~~ll~~~y~~~ 248 (427)
T PRK07033 227 TVPLWVCVALALLLALLLFIGL 248 (427)
T ss_pred cCcHHHHHHHHHHHHHHHHHHH
Confidence 5889999888877777777654
No 342
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=21.78 E-value=47 Score=29.70 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhc
Q 030828 148 GVSFIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 148 G~~~~~V~~v~ll~~llgy~~~ 169 (171)
...+++.+++.++.+.+||++|
T Consensus 196 ~~~i~l~~l~v~l~~~~~Y~~f 217 (359)
T PF10140_consen 196 YASIGLSILLVLLLIPLGYLYF 217 (359)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666777665
No 343
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=21.71 E-value=88 Score=21.03 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhc
Q 030828 157 VGLVGIVLGYVMK 169 (171)
Q Consensus 157 v~ll~~llgy~~~ 169 (171)
+.++-.+++|++.
T Consensus 22 L~~~i~l~~~~~~ 34 (79)
T PF04277_consen 22 LILVISLMSKLIR 34 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334666653
No 344
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=21.71 E-value=4.9e+02 Score=22.00 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=13.1
Q ss_pred CCchHHHHHHHHHHHHH
Q 030828 147 GGVSFIFVILVGLVGIV 163 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~l 163 (171)
.||.-.+++.+.++|.+
T Consensus 65 ~~y~~~~~It~~llgs~ 81 (251)
T COG5415 65 HGYRPYLVITALLLGSG 81 (251)
T ss_pred cccchhHHHHHHHHhhh
Confidence 68888888888888833
No 345
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=21.59 E-value=3.5e+02 Score=20.21 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc-----cCCC---CCchHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELL--RREG-----KKNR---GGVSFIFVILVGLVGIVL 164 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l--r~~~-----~~~~---~G~~~~~V~~v~ll~~ll 164 (171)
.-.+|..-|.++..+-..+..++++|...+..+ .+.. .... -||....=+--||...+-
T Consensus 36 d~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Les~p~~W~~~gf~~~a~iP~~l~~yl~ 104 (109)
T PF11690_consen 36 DKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALESHPFDWERRGFDKVAPIPDMLRMYLR 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHhchHHhccccHHHHHHHH
Confidence 346778888888887778888888887555544 2221 1111 467654445555555543
No 346
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.45 E-value=1.2e+02 Score=20.08 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q 030828 155 ILVGLVGIVLGYV 167 (171)
Q Consensus 155 ~~v~ll~~llgy~ 167 (171)
+.++++|-+|||+
T Consensus 42 ~gl~llS~ll~~l 54 (55)
T PF11293_consen 42 IGLGLLSRLLSRL 54 (55)
T ss_pred HHHHHHHHHHHHh
Confidence 4455666666664
No 347
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=21.42 E-value=1.4e+02 Score=16.65 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 030828 150 SFIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 150 ~~~~V~~v~ll~~llgy~~~ 169 (171)
+...++.+++++. .+|++.
T Consensus 11 ~~~~~~G~~l~~~-~~~~~~ 29 (34)
T TIGR01167 11 SLLLLLGLLLLGL-GGLLLR 29 (34)
T ss_pred HHHHHHHHHHHHH-HHHHhe
Confidence 3344444444444 444443
No 348
>PRK01622 OxaA-like protein precursor; Validated
Probab=21.39 E-value=3.4e+02 Score=22.84 Aligned_cols=39 Identities=13% Similarity=0.320 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc
Q 030828 104 QDKSTEARALISKLKDEKNNA--VQQNNKLRQDLELLRREG 142 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~--~~q~~~Lq~El~~lr~~~ 142 (171)
.+|..+.+-++.+++++.... .+.++++++|+..+-++.
T Consensus 90 ~~km~~iqP~l~~iq~kyk~~~d~~~~~~~~~e~~~Lyk~~ 130 (256)
T PRK01622 90 QEKMAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSG 130 (256)
T ss_pred HHHHHHhCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 345666667777777765432 122335677777776653
No 349
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=21.30 E-value=31 Score=22.71 Aligned_cols=17 Identities=24% Similarity=0.512 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHH
Q 030828 149 VSFIFVILVGLVGIVLG 165 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llg 165 (171)
+++.+.+++||+|+..+
T Consensus 3 ~p~~llllvlllGla~s 19 (56)
T PF08138_consen 3 TPIFLLLLVLLLGLAQS 19 (56)
T ss_dssp -----------------
T ss_pred chHHHHHHHHHHHHHhc
Confidence 46677788889998877
No 350
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=21.30 E-value=4.5e+02 Score=24.04 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=13.4
Q ss_pred hhhh-ccccCceeeEEEeEEE
Q 030828 35 AEMF-NKEAGHVVEECKLRVI 54 (171)
Q Consensus 35 ~~~f-~k~~~~~i~e~KLrVv 54 (171)
|..| ...+|..|.-..|.|+
T Consensus 107 p~~wl~~lpG~~i~a~~l~v~ 127 (420)
T PF11902_consen 107 PFDWLASLPGEVIVAVHLEVL 127 (420)
T ss_pred CHhHHhcCCCcEEEEEEEEEe
Confidence 3445 5667778877777765
No 351
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.29 E-value=3.4e+02 Score=20.72 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=12.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 133 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~ 133 (171)
.+..|+++..+.....++|.....+....++.
T Consensus 72 ~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~ 103 (126)
T PF07889_consen 72 RVDDKLDEQKEISKQIKDEVTEVREDVSQIGD 103 (126)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444444444444444333333333333
No 352
>PRK02944 OxaA-like protein precursor; Validated
Probab=21.26 E-value=2.5e+02 Score=23.61 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 030828 104 QDKSTEARALISKLKDEKNNA-VQQNNKLRQDLELLRRE 141 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~-~~q~~~Lq~El~~lr~~ 141 (171)
..+.++.+-++.++++..... .+.++++++|+..|-++
T Consensus 85 ~~km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~Lyk~ 123 (255)
T PRK02944 85 TKAMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQLFQK 123 (255)
T ss_pred HHHHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345666666777777654321 22356677787766665
No 353
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=21.26 E-value=3.1e+02 Score=19.49 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=16.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
++..++++.-.+|..|=.+|..+.++.-.+
T Consensus 7 ~lR~~ID~ID~qLv~LL~~R~~~~~~ia~~ 36 (94)
T TIGR01795 7 ALRQSIDNIDAAVIHMLAERFKCTSQVGVL 36 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554444444
No 354
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.26 E-value=2.6e+02 Score=23.58 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=21.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
++.++..+++.+-+|..++-+++.+.++.+.+-.+|+.
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666555555555555555553
No 355
>PF11621 Sbi-IV: C3 binding domain 4 of IgG-bind protein SBI; InterPro: IPR021657 This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation []. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold []. ; PDB: 2JVG_A 2JVH_A 2WY7_Q 2WY8_Q.
Probab=21.19 E-value=1.8e+02 Score=19.61 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.1
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDE 120 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE 120 (171)
.++.+-+|...|++|.++
T Consensus 10 hder~~~AN~Ai~~L~~~ 27 (69)
T PF11621_consen 10 HDERVMSANDAISKLQQK 27 (69)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhhhc
Confidence 467788999999999876
No 356
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=21.16 E-value=4.3e+02 Score=21.85 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=22.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
-++|+.+|++.+++|..|+.=+..-.|..-.|++.
T Consensus 46 keelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRK 80 (208)
T KOG4010|consen 46 KEELRTELAKVEEEIVTLRQVLAAKERHAAELKRK 80 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888876555444444444433
No 357
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.15 E-value=4.9e+02 Score=21.73 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 030828 151 FIFVILVGLVGIVLGYVMK 169 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~ 169 (171)
++.-+++|+++|.+.|++-
T Consensus 194 F~~G~i~~~v~~yl~~~wl 212 (213)
T KOG3251|consen 194 FYGGVILTLVIMYLFYRWL 212 (213)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445677777777777664
No 358
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.05 E-value=91 Score=22.48 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q 030828 149 VSFIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~ 168 (171)
.|+++.+++.+++|++-|++
T Consensus 14 ~sl~~~~~~l~~~~~~l~ll 33 (108)
T PF07219_consen 14 TSLWVALILLLLLFVVLYLL 33 (108)
T ss_pred eeHHHHHHHHHHHHHHHHHH
Confidence 35555566666666655554
No 359
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=21.00 E-value=3.3e+02 Score=19.60 Aligned_cols=33 Identities=6% Similarity=0.018 Sum_probs=24.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
++++..++++.-.+|..|=.+|..+.++.-.++
T Consensus 10 L~~lR~~ID~ID~~iv~LL~eR~~~~~~ia~~K 42 (101)
T PRK07075 10 LDDIREAIDRLDRDIIAALGRRMQYVKAASRFK 42 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777788888888888777777777766664
No 360
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.00 E-value=27 Score=25.34 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHHHhcC
Q 030828 149 VSFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~~~~ 170 (171)
=|++|.+=.+|=+.+|||+|.+
T Consensus 67 ESlLFaLQAaiGagiIgY~~G~ 88 (91)
T TIGR01165 67 ESLLFALQAALGALVIGYVIGY 88 (91)
T ss_pred HHHHHHHHHHhhheeeeEEEEE
Confidence 3567777777777777777643
No 361
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.84 E-value=2.8e+02 Score=23.28 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030828 123 NAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 123 ~~~~q~~~Lq~El~~lr~ 140 (171)
.+..||+.|+.-.++|+.
T Consensus 157 dL~~QRe~L~rar~rL~~ 174 (220)
T KOG1666|consen 157 DLHGQREQLERARERLRE 174 (220)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455666666655555553
No 362
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.72 E-value=2.4e+02 Score=23.27 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=9.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNN 123 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~ 123 (171)
.++.++++.+....++..|...
T Consensus 24 ~le~e~~elkd~~lR~~AefeN 45 (208)
T PRK14155 24 ALKAEVAALKDQALRYAAEAEN 45 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 363
>PRK13673 hypothetical protein; Provisional
Probab=20.70 E-value=2e+02 Score=21.72 Aligned_cols=35 Identities=31% Similarity=0.666 Sum_probs=18.2
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHh
Q 030828 133 QDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVM 168 (171)
Q Consensus 133 ~El~~lr~~~~~~~~G~~~~~V~~v~ll~~llgy~~ 168 (171)
-|+...|++.+++.+|+=.+++++ .++-+++||.+
T Consensus 77 mEm~l~r~kk~k~~~~~~~~~ii~-lvlti~lG~~L 111 (118)
T PRK13673 77 MEMSLAKRKKGKPTGGFWWIFIIV-LVLTILLGLIL 111 (118)
T ss_pred HHHHHHHHHcCCCcccHHHHHHHH-HHHHHHHHHHh
Confidence 466667766444445643333332 45555677643
No 364
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.44 E-value=2.8e+02 Score=28.13 Aligned_cols=60 Identities=27% Similarity=0.207 Sum_probs=38.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGL 159 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~~~~~~G~~~~~V~~v~l 159 (171)
.++++.--.|..+.|..|..+.+....++..|+++.+.|.........--|+|+.+--+|
T Consensus 552 ae~lE~~~~e~eal~E~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~~~~AP~Wl~Aq~AL 611 (1480)
T COG3096 552 AEELEALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNAL 611 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 345666777778888888888888888888888776665544322223356666554443
No 365
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.43 E-value=2.8e+02 Score=23.57 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 108 TEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 108 ~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.-..+.|..+++|+..+.+.++.++.|++.++
T Consensus 89 ~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~k 120 (246)
T KOG4657|consen 89 MGIEQEIKATQSELEVLRRNLQLLKEEKDDSK 120 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33445555555555555555555555555333
No 366
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=20.40 E-value=3.3e+02 Score=20.69 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=21.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
..+-.=+|.++.|+.|+-|++....-++.|.
T Consensus 22 ~WeiERaEmkarIa~LEGE~r~~e~l~~dL~ 52 (134)
T PF08232_consen 22 QWEIERAEMKARIAFLEGERRGQENLKKDLK 52 (134)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567788888888888886655555553
No 367
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.39 E-value=1.6e+02 Score=25.41 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 030828 117 LKDEKNNAVQQNNKLR 132 (171)
Q Consensus 117 L~eE~~~~~~q~~~Lq 132 (171)
|++|++.+..|++.++
T Consensus 44 lr~e~~~l~~~~~~~~ 59 (308)
T PF11382_consen 44 LREENDELRAELDALQ 59 (308)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 368
>PF00662 Oxidored_q1_N: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; InterPro: IPR001516 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This domain represents an N-terminal extension of IPR001750 from INTERPRO. It contains NADH-Ubiquinone chain 5 and eubacterial chain L; these are found in the NADH:ubiquinone oxidoreductase (complex I) which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport, 0055114 oxidation-reduction process; PDB: 3RKO_L.
Probab=20.37 E-value=1e+02 Score=19.91 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.1
Q ss_pred CCchHHHHHHHHHHHHHHH
Q 030828 147 GGVSFIFVILVGLVGIVLG 165 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~llg 165 (171)
.++++.++++++++|+++.
T Consensus 22 D~ls~~f~~~v~~Is~~V~ 40 (62)
T PF00662_consen 22 DPLSALFLLLVLFISSLVH 40 (62)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHhheeee
Confidence 3578889999999998865
No 369
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=20.23 E-value=1.1e+02 Score=19.71 Aligned_cols=16 Identities=38% Similarity=0.602 Sum_probs=8.7
Q ss_pred CchHHHHHHHHHHHHH
Q 030828 148 GVSFIFVILVGLVGIV 163 (171)
Q Consensus 148 G~~~~~V~~v~ll~~l 163 (171)
|++.+.+++++++.++
T Consensus 2 gig~~elliI~vi~ll 17 (51)
T PRK01470 2 GMSFSHLLIVLLIIFV 17 (51)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555555555544
No 370
>PF15294 Leu_zip: Leucine zipper
Probab=20.22 E-value=3.1e+02 Score=23.77 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=33.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+..|++....++..+..+..+-....+++.+|+.+|..++.
T Consensus 134 i~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 134 IDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888999999888887776
No 371
>PRK14151 heat shock protein GrpE; Provisional
Probab=20.20 E-value=3e+02 Score=22.04 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=13.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAV 125 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~ 125 (171)
..++.++.+.+....++..|...++
T Consensus 30 ~~le~e~~el~d~~lR~~Ae~eN~r 54 (176)
T PRK14151 30 QELEEQLAAAKDQSLRAAADLQNVR 54 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554443
No 372
>PF13073 DUF3937: Protein of unknown function (DUF3937)
Probab=20.16 E-value=1.2e+02 Score=20.86 Aligned_cols=19 Identities=11% Similarity=0.607 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 030828 149 VSFIFVILVGLVGIVLGYV 167 (171)
Q Consensus 149 ~~~~~V~~v~ll~~llgy~ 167 (171)
|-+...++++++-|-||||
T Consensus 10 ~gltlfv~L~vi~FtigYf 28 (73)
T PF13073_consen 10 FGLTLFVFLSVIDFTIGYF 28 (73)
T ss_pred hhhHHHHHHHHHHhhHHHH
Confidence 4456667788899999997
No 373
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.14 E-value=4.1e+02 Score=22.01 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQN 128 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~ 128 (171)
.+++.+.+.....+++|..++.+++
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~ 95 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESG 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5666777777777777766666644
No 374
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.06 E-value=2.2e+02 Score=27.77 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=15.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQ 126 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~ 126 (171)
+-+++.|-.|.+++|+++......+.+
T Consensus 95 L~ele~krqel~seI~~~n~kiEelk~ 121 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIEELKR 121 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 335667766666666666433333333
Done!