Query 030828
Match_columns 171
No_of_seqs 147 out of 337
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 99.5 4.8E-15 1.7E-19 115.0 4.6 66 1-71 84-151 (152)
2 2cri_A Vesicle-associated memb 99.3 1.1E-12 3.8E-17 100.9 6.7 57 1-61 80-136 (147)
3 1z9l_A Vesicle-associated memb 99.2 1.6E-11 5.6E-16 92.0 6.2 52 1-56 76-127 (128)
4 1msp_A MSP, major sperm protei 98.6 4.3E-08 1.5E-12 73.4 5.1 52 1-56 74-125 (126)
5 1m1s_A WR4; structural genomic 97.5 0.00011 3.6E-09 54.5 4.7 38 12-54 77-114 (116)
6 1row_A SSP-19, MSP-domain prot 97.1 0.00053 1.8E-08 50.0 4.5 37 12-53 69-105 (109)
7 2jee_A YIIU; FTSZ, septum, coi 92.1 0.42 1.4E-05 33.0 6.1 38 100-137 8-45 (81)
8 1nlw_A MAD protein, MAX dimeri 88.9 1 3.6E-05 30.6 5.8 36 106-141 41-76 (80)
9 1nkp_B MAX protein, MYC proto- 86.8 1.7 5.7E-05 29.3 5.8 35 107-141 42-76 (83)
10 2oqq_A Transcription factor HY 84.4 2.9 9.9E-05 25.2 5.2 34 101-134 6-39 (42)
11 2jee_A YIIU; FTSZ, septum, coi 82.2 4.3 0.00015 27.9 6.1 38 100-137 29-66 (81)
12 1gd2_E Transcription factor PA 81.5 1.8 6.2E-05 28.9 3.9 37 101-137 32-68 (70)
13 1nkp_A C-MYC, MYC proto-oncoge 78.2 5.6 0.00019 27.3 5.8 33 107-139 47-79 (88)
14 1am9_A Srebp-1A, protein (ster 78.0 5.4 0.00018 26.9 5.6 33 106-138 44-76 (82)
15 3m9b_A Proteasome-associated A 77.9 2.1 7.2E-05 35.3 4.1 41 100-140 56-96 (251)
16 1hlo_A Protein (transcription 75.6 3.8 0.00013 27.4 4.2 29 106-134 51-79 (80)
17 3m91_A Proteasome-associated A 75.4 9.7 0.00033 23.8 5.7 37 102-138 13-49 (51)
18 2ls4_A High affinity copper up 77.3 0.58 2E-05 25.6 0.0 18 153-170 4-21 (26)
19 3hnw_A Uncharacterized protein 74.2 5.1 0.00018 29.9 5.0 33 102-134 79-111 (138)
20 1t2k_D Cyclic-AMP-dependent tr 73.1 11 0.00039 23.7 5.9 33 107-139 24-56 (61)
21 3mq7_A Bone marrow stromal ant 72.5 20 0.00069 26.2 7.6 40 102-141 57-100 (121)
22 2l5g_A GPS2 protein, G protein 71.5 7.7 0.00026 22.8 4.2 25 107-131 10-34 (38)
23 2ks1_B Epidermal growth factor 70.3 3.3 0.00011 25.2 2.6 18 154-171 21-38 (44)
24 2akf_A Coronin-1A; coiled coil 70.0 5.3 0.00018 22.3 3.1 26 115-140 2-27 (32)
25 1ci6_A Transcription factor AT 68.5 16 0.00056 23.3 5.9 34 106-139 24-57 (63)
26 2yy0_A C-MYC-binding protein; 68.2 12 0.00041 23.4 5.0 21 101-121 22-42 (53)
27 1gd2_E Transcription factor PA 68.1 10 0.00035 25.1 4.9 39 103-141 27-65 (70)
28 1hjb_A Ccaat/enhancer binding 67.2 14 0.00048 25.5 5.6 40 103-142 34-73 (87)
29 3arc_J Photosystem II reaction 66.8 3.2 0.00011 24.8 1.9 24 147-170 6-31 (40)
30 4fm3_A Uncharacterized hypothe 66.7 11 0.00039 26.6 5.2 36 100-135 59-94 (98)
31 4e61_A Protein BIM1; EB1-like 66.6 19 0.00067 25.8 6.4 29 103-131 9-37 (106)
32 2wt7_A Proto-oncogene protein 66.5 19 0.00065 22.9 5.9 31 108-138 26-56 (63)
33 1dh3_A Transcription factor CR 66.1 13 0.00044 23.3 4.9 30 112-141 22-51 (55)
34 1jnm_A Proto-oncogene C-JUN; B 66.0 7.8 0.00027 24.7 3.9 32 107-138 24-55 (62)
35 2l2t_A Receptor tyrosine-prote 65.5 4.8 0.00016 24.5 2.6 18 154-171 20-37 (44)
36 2v66_B Nuclear distribution pr 65.1 19 0.00064 26.0 6.2 35 99-133 18-56 (111)
37 1t2k_D Cyclic-AMP-dependent tr 64.6 16 0.00055 23.0 5.2 32 102-133 26-57 (61)
38 2dgc_A Protein (GCN4); basic d 64.0 11 0.00038 24.3 4.3 29 113-141 31-59 (63)
39 2w6a_A ARF GTPase-activating p 62.4 29 0.00098 22.4 6.2 40 99-138 14-53 (63)
40 3efg_A Protein SLYX homolog; x 61.8 26 0.00091 23.4 6.1 43 100-142 16-58 (78)
41 4dzn_A Coiled-coil peptide CC- 60.3 20 0.00068 19.9 4.8 25 114-138 4-28 (33)
42 2dgc_A Protein (GCN4); basic d 59.9 20 0.00069 23.0 5.1 33 104-136 29-61 (63)
43 1go4_E MAD1 (mitotic arrest de 59.4 18 0.00063 25.6 5.2 31 106-136 13-43 (100)
44 1ic2_A Tropomyosin alpha chain 58.6 32 0.0011 22.9 6.1 40 100-139 22-61 (81)
45 1gu4_A CAAT/enhancer binding p 58.4 28 0.00094 23.4 5.7 38 104-141 35-72 (78)
46 3c3g_A Alpha/beta peptide with 57.9 24 0.00081 20.1 4.6 27 115-141 3-29 (33)
47 1nkp_A C-MYC, MYC proto-oncoge 57.8 18 0.00062 24.6 4.8 33 107-139 54-86 (88)
48 2wuj_A Septum site-determining 57.5 18 0.00061 22.7 4.4 26 113-138 28-53 (57)
49 3q0x_A Centriole protein; cent 57.3 24 0.0008 28.5 6.1 42 100-141 173-214 (228)
50 2oxj_A Hybrid alpha/beta pepti 56.5 26 0.00088 20.1 4.5 27 115-141 4-30 (34)
51 2wt7_A Proto-oncogene protein 56.1 27 0.00093 22.2 5.2 30 112-141 23-52 (63)
52 1dh3_A Transcription factor CR 56.0 17 0.00057 22.8 4.0 32 104-135 21-52 (55)
53 3u1c_A Tropomyosin alpha-1 cha 55.9 34 0.0012 23.8 6.1 39 100-138 25-63 (101)
54 3m48_A General control protein 55.4 26 0.00087 20.0 4.3 26 116-141 4-29 (33)
55 2eqb_B RAB guanine nucleotide 54.0 34 0.0012 24.1 5.7 38 102-139 16-60 (97)
56 3i00_A HIP-I, huntingtin-inter 53.9 34 0.0011 24.8 6.0 38 104-141 46-83 (120)
57 4emc_A Monopolin complex subun 53.8 15 0.00051 29.0 4.3 31 102-132 31-61 (190)
58 1wt6_A Myotonin-protein kinase 53.6 42 0.0014 22.9 6.0 38 103-140 29-66 (81)
59 2wg5_A General control protein 53.2 16 0.00053 25.9 4.0 27 114-140 9-35 (109)
60 2wt7_B Transcription factor MA 53.1 31 0.0011 23.9 5.4 32 102-133 52-83 (90)
61 2yy0_A C-MYC-binding protein; 52.9 16 0.00053 22.8 3.5 30 112-141 19-48 (53)
62 1a93_B MAX protein, coiled coi 52.4 26 0.00089 20.1 4.0 23 113-135 8-30 (34)
63 1go4_E MAD1 (mitotic arrest de 52.0 32 0.0011 24.3 5.4 30 111-140 11-40 (100)
64 1jnm_A Proto-oncogene C-JUN; B 51.9 35 0.0012 21.5 5.2 31 111-141 21-51 (62)
65 2wt7_B Transcription factor MA 51.4 42 0.0014 23.2 5.9 34 108-141 51-84 (90)
66 3s9g_A Protein hexim1; cyclin 50.7 47 0.0016 23.6 6.0 29 113-141 66-94 (104)
67 1nkp_B MAX protein, MYC proto- 50.7 21 0.00071 23.7 4.1 32 107-138 49-80 (83)
68 1uo4_A General control protein 50.5 34 0.0011 19.6 4.5 27 115-141 4-30 (34)
69 1nlw_A MAD protein, MAX dimeri 50.3 25 0.00086 23.5 4.5 31 107-137 49-79 (80)
70 3c3f_A Alpha/beta peptide with 50.3 34 0.0012 19.6 4.6 27 115-141 4-30 (34)
71 1uii_A Geminin; human, DNA rep 50.1 43 0.0015 22.9 5.6 34 106-139 40-73 (83)
72 3s4r_A Vimentin; alpha-helix, 49.5 47 0.0016 22.8 5.9 37 104-140 55-91 (93)
73 2xdj_A Uncharacterized protein 49.5 47 0.0016 22.5 5.8 31 108-138 23-53 (83)
74 1jb0_X Photosystem I subunit P 49.5 18 0.00061 20.8 3.0 20 151-170 14-33 (35)
75 2wuj_A Septum site-determining 49.3 19 0.00067 22.5 3.6 34 101-134 23-56 (57)
76 2v4h_A NF-kappa-B essential mo 48.4 53 0.0018 23.6 6.1 33 100-132 26-58 (110)
77 2w6a_A ARF GTPase-activating p 47.7 50 0.0017 21.3 5.3 38 103-140 25-62 (63)
78 2k1k_A Ephrin type-A receptor 47.5 16 0.00055 21.3 2.7 23 148-170 15-37 (38)
79 2bni_A General control protein 46.5 40 0.0014 19.3 4.5 27 115-141 4-30 (34)
80 2w6b_A RHO guanine nucleotide 46.3 41 0.0014 21.3 4.6 21 112-132 10-30 (56)
81 3tnu_B Keratin, type II cytosk 46.2 49 0.0017 23.8 5.9 34 102-135 33-66 (129)
82 3u59_A Tropomyosin beta chain; 46.2 60 0.0021 22.3 6.1 38 100-137 25-62 (101)
83 3fga_D Shugoshin-like 1; PP2A, 45.6 24 0.00082 21.6 3.3 23 102-124 21-43 (47)
84 2kes_A Synphilin-1; synphillin 45.5 49 0.0017 20.0 5.0 29 111-139 10-38 (48)
85 1ci6_A Transcription factor AT 44.7 53 0.0018 20.8 5.2 33 101-133 26-58 (63)
86 1jcd_A Major outer membrane li 44.3 56 0.0019 20.3 6.1 35 102-136 8-42 (52)
87 3m91_A Proteasome-associated A 43.6 56 0.0019 20.2 5.9 34 106-139 10-43 (51)
88 1fmh_A General control protein 43.2 42 0.0014 18.6 4.5 27 114-140 3-29 (33)
89 2v71_A Nuclear distribution pr 43.0 59 0.002 25.5 6.2 33 100-132 72-108 (189)
90 2zvf_A Alanyl-tRNA synthetase; 42.4 31 0.0011 25.4 4.4 37 102-138 22-58 (171)
91 3trt_A Vimentin; cytoskeleton, 42.4 67 0.0023 20.7 5.9 23 117-139 54-76 (77)
92 1l8d_A DNA double-strand break 42.0 63 0.0022 22.1 5.7 39 101-139 6-44 (112)
93 2eqb_B RAB guanine nucleotide 41.7 67 0.0023 22.5 5.7 32 105-136 5-36 (97)
94 3w03_C DNA repair protein XRCC 41.3 57 0.0019 25.5 5.8 31 107-137 147-177 (184)
95 3cvf_A Homer-3, homer protein 40.3 78 0.0027 21.3 5.7 32 103-134 18-49 (79)
96 1l8d_A DNA double-strand break 40.1 61 0.0021 22.2 5.4 35 102-136 68-102 (112)
97 4etp_A Kinesin-like protein KA 40.0 52 0.0018 28.3 6.0 22 103-124 8-29 (403)
98 2fxo_A Myosin heavy chain, car 39.9 75 0.0026 22.8 6.0 39 102-140 80-118 (129)
99 1dip_A Delta-sleep-inducing pe 39.1 50 0.0017 22.2 4.4 24 109-132 19-42 (78)
100 3w03_C DNA repair protein XRCC 38.8 50 0.0017 25.8 5.1 34 103-136 150-183 (184)
101 3hd7_A Vesicle-associated memb 38.3 91 0.0031 21.1 7.9 6 162-167 84-89 (91)
102 3tnu_A Keratin, type I cytoske 37.4 55 0.0019 23.6 4.9 30 103-132 36-65 (131)
103 3ghg_A Fibrinogen alpha chain; 36.8 41 0.0014 30.5 4.8 37 103-139 107-144 (562)
104 4etp_A Kinesin-like protein KA 36.7 55 0.0019 28.2 5.6 39 102-140 21-59 (403)
105 3nmd_A CGMP dependent protein 36.0 67 0.0023 21.4 4.7 32 108-139 36-67 (72)
106 4h22_A Leucine-rich repeat fli 36.0 79 0.0027 22.5 5.3 32 100-131 32-63 (103)
107 1lwu_C Fibrinogen gamma chain; 35.3 1.1E+02 0.0038 25.7 7.1 42 100-141 14-55 (323)
108 3cve_A Homer protein homolog 1 35.0 98 0.0033 20.5 5.7 29 104-132 13-41 (72)
109 3mq7_A Bone marrow stromal ant 34.8 1E+02 0.0035 22.4 5.9 34 106-139 72-105 (121)
110 4emc_A Monopolin complex subun 34.6 1.3E+02 0.0046 23.5 7.0 28 103-130 11-38 (190)
111 1kd8_A GABH AIV, GCN4 acid bas 34.5 68 0.0023 18.5 4.5 25 116-140 5-29 (36)
112 2aze_B Transcription factor E2 34.3 99 0.0034 21.7 5.7 36 104-139 5-40 (106)
113 2jwa_A Receptor tyrosine-prote 34.1 18 0.0006 22.0 1.4 16 155-170 22-37 (44)
114 2lx0_A Membrane fusion protein 34.0 32 0.0011 18.9 2.4 14 155-168 11-25 (32)
115 1kd8_B GABH BLL, GCN4 acid bas 33.7 70 0.0024 18.4 4.6 24 117-140 6-29 (36)
116 3rmi_A Chorismate mutase prote 33.5 99 0.0034 21.8 5.7 32 100-131 14-45 (114)
117 4ani_A Protein GRPE; chaperone 33.3 85 0.0029 24.9 5.8 18 103-120 71-88 (213)
118 4h22_A Leucine-rich repeat fli 32.7 1.3E+02 0.0045 21.3 6.1 27 103-129 7-33 (103)
119 1gu4_A CAAT/enhancer binding p 32.5 1.1E+02 0.0038 20.4 5.7 31 111-141 35-65 (78)
120 1rh5_B Preprotein translocase 32.1 37 0.0013 22.6 2.9 9 155-163 46-54 (74)
121 1vcs_A Vesicle transport throu 31.8 1E+02 0.0035 21.2 5.4 23 100-122 40-62 (102)
122 1fxk_C Protein (prefoldin); ar 31.5 1.3E+02 0.0044 21.2 6.1 39 101-139 91-129 (133)
123 2czv_C Ribonuclease P protein 31.2 40 0.0014 24.0 3.2 58 1-58 2-63 (120)
124 1hjb_A Ccaat/enhancer binding 31.1 1.3E+02 0.0043 20.5 5.7 25 117-141 41-65 (87)
125 3m9b_A Proteasome-associated A 30.6 53 0.0018 26.9 4.2 37 105-141 54-90 (251)
126 3na7_A HP0958; flagellar bioge 30.3 1.1E+02 0.0038 24.2 6.1 40 100-139 34-73 (256)
127 2jp3_A FXYD domain-containing 29.8 35 0.0012 22.5 2.4 15 151-165 22-36 (67)
128 3u06_A Protein claret segregat 29.7 1E+02 0.0034 26.6 6.1 26 103-128 8-33 (412)
129 2zqm_A Prefoldin beta subunit 29.7 1.3E+02 0.0044 20.4 5.7 38 101-138 73-110 (117)
130 3vkg_A Dynein heavy chain, cyt 29.7 1.2E+02 0.0041 33.3 7.6 42 100-141 2030-2071(3245)
131 2iub_A CORA, divalent cation t 29.5 1.7E+02 0.0058 24.2 7.4 22 148-170 338-359 (363)
132 3ol1_A Vimentin; structural ge 29.5 1.4E+02 0.0047 21.1 5.9 23 107-129 22-44 (119)
133 4ath_A MITF, microphthalmia-as 29.3 71 0.0024 21.8 4.1 24 107-130 34-57 (83)
134 3mq9_A Bone marrow stromal ant 29.0 85 0.0029 26.7 5.5 8 20-27 276-283 (471)
135 2jo1_A Phospholemman; FXYD1, N 28.8 37 0.0013 22.6 2.4 15 151-165 21-35 (72)
136 1wlq_A Geminin; coiled-coil; 2 28.4 1.2E+02 0.0042 20.6 5.1 19 113-131 46-64 (83)
137 2ww9_B Protein transport prote 28.1 47 0.0016 22.5 2.9 9 155-163 59-67 (80)
138 3s9g_A Protein hexim1; cyclin 27.9 1.6E+02 0.0055 20.8 6.4 40 102-141 41-80 (104)
139 3mp7_B Preprotein translocase 27.8 51 0.0017 21.1 2.9 9 155-163 42-50 (61)
140 1uii_A Geminin; human, DNA rep 27.6 98 0.0033 21.1 4.5 24 109-132 50-73 (83)
141 3ibp_A Chromosome partition pr 27.4 1.1E+02 0.0036 25.8 5.6 23 116-138 14-36 (302)
142 3a7p_A Autophagy protein 16; c 27.4 1.5E+02 0.0051 22.4 5.9 17 103-119 73-89 (152)
143 3rrk_A V-type ATPase 116 kDa s 26.8 1.2E+02 0.0041 24.8 5.9 38 102-139 96-136 (357)
144 4ev6_A Magnesium transport pro 26.7 2.1E+02 0.0072 23.3 7.4 16 155-170 320-335 (339)
145 3o0z_A RHO-associated protein 26.4 1.7E+02 0.0057 22.5 6.1 36 104-139 96-131 (168)
146 2hy6_A General control protein 26.1 97 0.0033 17.6 4.5 25 116-140 5-29 (34)
147 3swk_A Vimentin; cytoskeleton, 25.8 1.5E+02 0.0052 19.8 5.5 12 112-123 7-18 (86)
148 1dip_A Delta-sleep-inducing pe 25.8 1.1E+02 0.0039 20.4 4.4 22 100-121 17-38 (78)
149 1fxk_A Prefoldin; archaeal pro 25.8 1.4E+02 0.0048 20.0 5.2 33 102-134 69-101 (107)
150 1fzc_C Fibrin; blood coagulati 25.7 83 0.0028 26.5 4.7 41 101-141 7-47 (319)
151 2wq1_A General control protein 25.7 97 0.0033 17.5 4.6 24 117-140 5-28 (33)
152 2zxe_G FXYD10, phospholemman-l 25.0 47 0.0016 22.3 2.4 15 151-165 24-38 (74)
153 2r2v_A GCN4 leucine zipper; co 25.0 1E+02 0.0035 17.5 4.6 24 117-140 6-29 (34)
154 3mud_A DNA repair protein XRCC 25.0 1.3E+02 0.0046 23.2 5.4 33 105-137 135-167 (175)
155 1tu3_F RAB GTPase binding effe 24.8 80 0.0027 21.3 3.5 40 102-141 9-55 (79)
156 2wvr_A Geminin; DNA replicatio 24.2 1.5E+02 0.0051 23.5 5.6 22 111-132 121-142 (209)
157 2f95_B Sensory rhodopsin II tr 24.2 34 0.0012 23.9 1.8 18 153-170 64-81 (163)
158 1ybz_A Chorismate mutase; cons 24.1 1.7E+02 0.0058 19.7 5.5 34 107-140 19-52 (91)
159 2j5u_A MREC protein; bacterial 24.1 73 0.0025 25.5 4.0 33 102-134 23-58 (255)
160 1a92_A Delta antigen; leucine 24.0 63 0.0021 19.9 2.7 21 100-120 16-36 (50)
161 4ati_A MITF, microphthalmia-as 23.8 74 0.0025 22.7 3.5 22 106-127 68-89 (118)
162 1a93_A Coiled coil, LZ, MYC pr 23.7 1.1E+02 0.0037 17.4 4.2 24 115-138 10-33 (34)
163 2k1a_A Integrin alpha-IIB; sin 23.4 83 0.0028 18.6 3.1 17 147-163 6-22 (42)
164 1ecm_A Endo-oxabicyclic transi 23.1 1.8E+02 0.0062 19.8 5.5 33 100-132 7-39 (109)
165 3v86_A De novo design helix; c 23.1 94 0.0032 16.4 3.4 20 116-135 4-23 (27)
166 3q4f_C DNA repair protein XRCC 22.8 1.2E+02 0.0041 23.7 4.7 28 107-134 156-183 (186)
167 2j5u_A MREC protein; bacterial 22.5 75 0.0026 25.5 3.7 35 107-141 21-58 (255)
168 2knc_A Integrin alpha-IIB; tra 22.1 67 0.0023 20.1 2.6 17 147-163 8-24 (54)
169 3kin_B Kinesin heavy chain; mo 21.8 1.6E+02 0.0054 20.8 5.0 29 111-139 88-116 (117)
170 2zxx_A Geminin; coiled-coil, c 21.5 1.5E+02 0.0051 20.0 4.5 22 112-133 41-62 (79)
171 2zdi_C Prefoldin subunit alpha 21.5 2.3E+02 0.008 20.4 6.4 41 101-141 101-141 (151)
172 3n2f_G Na+/K+ ATPase gamma sub 21.4 46 0.0016 18.6 1.6 13 152-164 16-28 (31)
173 3ol1_A Vimentin; structural ge 21.3 1.6E+02 0.0056 20.8 5.0 32 100-131 22-53 (119)
174 1jb0_I Photosystem 1 reaction 21.2 70 0.0024 18.7 2.4 20 149-168 10-31 (38)
175 2z5i_A TM, general control pro 21.0 1.5E+02 0.0052 18.1 5.2 31 107-137 14-44 (52)
176 3mtu_E Head morphogenesis prot 20.8 2E+02 0.0068 19.3 5.5 36 102-137 34-69 (77)
177 3o0z_A RHO-associated protein 20.7 2.4E+02 0.0083 21.5 6.1 36 101-136 44-79 (168)
178 1use_A VAsp, vasodilator-stimu 20.5 1.3E+02 0.0044 18.2 3.5 18 107-124 17-34 (45)
179 3s4r_A Vimentin; alpha-helix, 20.3 2.1E+02 0.007 19.4 5.1 29 111-139 55-83 (93)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.53 E-value=4.8e-15 Score=115.02 Aligned_cols=66 Identities=20% Similarity=0.374 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeeC--CCCCccccchhhhccccCceeeEEEeEEEEeCCCCCCCCCCCCCCC
Q 030828 1 MQAQKEAPPDMQCKDKFLLQSVKTN--DGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEE 71 (171)
Q Consensus 1 ~Qa~~e~Ppd~kckDKFLVQSv~v~--~~~~~~~i~~~~f~k~~~~~i~e~KLrVv~~~p~~~~s~~~e~~e~ 71 (171)
||++++ .+|||||||||+.++ ++.+..|+. ++|.+..+..|+++||||+|+.|++|++++.+|.++
T Consensus 84 lq~~~~----~~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~ 151 (152)
T 1wic_A 84 PHGGLT----VSAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSS 151 (152)
T ss_dssp ECSSSC----CCSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSC
T ss_pred ecCccc----CCCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCC
Confidence 567654 389999999999999 666677885 999999999999999999999999999999888554
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=1.1e-12 Score=100.86 Aligned_cols=57 Identities=19% Similarity=0.404 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEEEEeCCCCC
Q 030828 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQP 61 (171)
Q Consensus 1 ~Qa~~e~Ppd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrVv~~~p~~~ 61 (171)
|||++. +|+++|||||||||+.++++. .++ .++|.+..+..++++||||+|+.|++.
T Consensus 80 l~~~~~-~p~~~~kDKFlVqs~~~~~~~--~d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~ 136 (147)
T 2cri_A 80 LQPFDY-DPNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFEMPNEN 136 (147)
T ss_dssp ECCCCC-CTTCCSCCCEEEEEEECCTTC--CCH-HHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred ECCCcC-CccccCCCEEEEEEEEcCCCc--ccH-HHHhhcCCCCceEEEEEEEEEecCCCC
Confidence 577754 457899999999999999864 356 699999989999999999999988654
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=99.21 E-value=1.6e-11 Score=91.97 Aligned_cols=52 Identities=19% Similarity=0.406 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEEEEe
Q 030828 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 56 (171)
Q Consensus 1 ~Qa~~e~Ppd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrVv~~ 56 (171)
|||++.. |+++|||||+|||+.+++|. .|+ .++|.+.++..++|+||||+|.
T Consensus 76 ~~~~~~~-p~~~~~dkF~V~s~~~~~~~--~~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 76 LQPFDYD-PNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp ECCCCCC-TTCCCCCEEEEEEEECCTTC--SCH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred ECcCcCC-cccccCCEEEEEEEECCCCc--chH-HHHhhcCCCCceEEEEEEEEEe
Confidence 5777554 57899999999999999864 356 6999999999999999999995
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=98.60 E-value=4.3e-08 Score=73.43 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEEEEe
Q 030828 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 56 (171)
Q Consensus 1 ~Qa~~e~Ppd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrVv~~ 56 (171)
|||+++.|++. +||||||||+.+++|.+ +++..++| ..+ ..+..++|+|-|-
T Consensus 74 ~q~~~~~~~~~-~kDKf~Vq~~~~p~~~~-~~~~~~wf-~~d-~~~~~k~L~V~Yn 125 (126)
T 1msp_A 74 CDTFNAATEDL-NNDRITIEWTNTPDGAA-KQFRREWF-QGD-GMVRRKNLPIEYN 125 (126)
T ss_dssp ECCCCGGGSCC-SSCEEEEEEEECCTTCC-SSCCTHHH-HSS-SCCEEEEEEEEEE
T ss_pred ecCCCCCCCcc-CCCEEEEEEEECCCCcc-hhhhHHhh-cCC-CceEEEEEEEEec
Confidence 68999888776 49999999999998864 67874444 333 4689999999984
No 5
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=97.50 E-value=0.00011 Score=54.51 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.0
Q ss_pred CCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEEE
Q 030828 12 QCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVI 54 (171)
Q Consensus 12 kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrVv 54 (171)
.|+||||||++.++++. .|. .++|.+..+ ..+.+|+++
T Consensus 77 ~k~DKflVq~~~~~~d~--~d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 77 PKEDKIVIQYAEVPAEE--TDP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp SCEEEEEEEEEEECTTC--CCT-THHHHTTCC--CEEEEEEEE
T ss_pred CCCCEEEEEEEECCCCC--CCH-HHHHhcCCC--CceEEEEEE
Confidence 58999999999999753 344 599988755 566777764
No 6
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=97.10 E-value=0.00053 Score=50.00 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=27.1
Q ss_pred CCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEE
Q 030828 12 QCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRV 53 (171)
Q Consensus 12 kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrV 53 (171)
.||||||||++.++++. .|. .++|.+..... +.+|++
T Consensus 69 ~~~dKflvq~~~~~~~~--~d~-~~~fk~~~~~g--~~~i~l 105 (109)
T 1row_A 69 PKEDKLVVHFASAPADA--TDA-QAAFVAVAPAG--TVTIPM 105 (109)
T ss_dssp CEEEEEEEEEEECCTTC--SCH-HHHHTTCCCCE--EEEEEE
T ss_pred CCCCEEEEEEEECCCCC--CCH-HHHhhcCCCCc--eEEEEE
Confidence 59999999999998763 345 69998865533 445554
No 7
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.13 E-value=0.42 Score=33.00 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=28.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
.+.|++|...|..+|.-|+.|...+.++|..|.++...
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888899998888888888887777776554443
No 8
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=88.94 E-value=1 Score=30.58 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
-|..|..+|..|+++...+..+...|+.+...|+++
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999988999999998887777665
No 9
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=86.82 E-value=1.7 Score=29.35 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
|..|..+|..|+++...+..+...|+++...|+++
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999988888888888888877777665
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=84.42 E-value=2.9 Score=25.25 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=23.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
++|+++-.+.....+.|.+..+.+.+||.-|+|-
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3566677777777777777777777777777654
No 11
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.22 E-value=4.3 Score=27.90 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=28.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
+++|+.+-..+.++...++..+..+.++|++|++|...
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777788888888887653
No 12
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=81.51 E-value=1.8 Score=28.89 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=18.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
.+|+.++.+.......|..|...+..++..|+.|+..
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444455555555545443
No 13
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=78.21 E-value=5.6 Score=27.27 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
|.+|..+|..|+++...+..+...|+++-..|+
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~ 79 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888887776665555444444433333
No 14
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=78.03 E-value=5.4 Score=26.90 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
=|.+|..+|..|+.+...+..++..|+.++...
T Consensus 44 IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 44 VLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 377899999999999999999998888766543
No 15
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=77.93 E-value=2.1 Score=35.28 Aligned_cols=41 Identities=24% Similarity=0.187 Sum_probs=33.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+.+++.+++.+.+...+|+++++.+.+|..+|++|++.|++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34567777777777888888899999999999999998874
No 16
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=75.58 E-value=3.8 Score=27.42 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
-|..|..+|..|+++...+..++..|+++
T Consensus 51 iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 51 ILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36788889999988877777776666543
No 17
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=75.37 E-value=9.7 Score=23.79 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=24.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
+++.++..+.+.-.+|.+-+..+..|...|+++++.|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555556666666667777777777777655
No 18
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=77.27 E-value=0.58 Score=25.57 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 030828 153 FVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 153 ~V~~v~ll~~llgy~~~~ 170 (171)
.+++..++|..+|||+++
T Consensus 4 ~l~iavvlGa~~Gyf~F~ 21 (26)
T 2ls4_A 4 YLCIAVAAGAGTGYFLFS 21 (26)
Confidence 456777889999999975
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.22 E-value=5.1 Score=29.87 Aligned_cols=33 Identities=15% Similarity=0.017 Sum_probs=13.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
.++.++.+...+|..|+.|+.++..+...+.++
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433333333333
No 20
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.06 E-value=11 Score=23.73 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
..+....+..|+.+...+..+...|+.|+..|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455544455555555555555444
No 21
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.49 E-value=20 Score=26.20 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=23.7
Q ss_pred hhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 102 EHQDKSTEARAL----ISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 102 ~l~~kl~ea~a~----I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.|.+.|.+-+++ +..|+.|+..+.++.+.+-.|+++||+.
T Consensus 57 tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 57 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444443 7777776666666555555677777765
No 22
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=71.50 E-value=7.7 Score=22.79 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
|.|.+.+|++|++++.++..+.-+|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888777776666544
No 23
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=70.25 E-value=3.3 Score=25.18 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 030828 154 VILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 154 V~~v~ll~~llgy~~~~~ 171 (171)
++++++++++++||++++
T Consensus 21 v~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 455556667777887764
No 24
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=69.96 E-value=5.3 Score=22.33 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 115 SKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 115 ~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
++|.|+...+..-.++||+.+++|..
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555543
No 25
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.50 E-value=16 Score=23.34 Aligned_cols=34 Identities=9% Similarity=0.268 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
...+....+..|+.+...+..+...|+.|...|+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555544443
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.20 E-value=12 Score=23.38 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=9.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEK 121 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~ 121 (171)
+.|+...++.++.+..|+++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 27
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=68.15 E-value=10 Score=25.14 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=31.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
-+..+.+.+..+..|..+...+..+|..|++++..|+..
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888889999888888889999998888877654
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.21 E-value=14 Score=25.47 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=29.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 142 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~ 142 (171)
-+.+-.+....+..|+.|...+..+...|+.|+..|+...
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566677778888888888888888888888777653
No 29
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=66.78 E-value=3.2 Score=24.78 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=17.2
Q ss_pred CCchHHHHHHHHHHHHH--HHHHhcC
Q 030828 147 GGVSFIFVILVGLVGIV--LGYVMKK 170 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~l--lgy~~~~ 170 (171)
+-+|+|+|..++=++++ +|.||++
T Consensus 6 GRiPLWlvgtv~G~~vi~~~giFfyG 31 (40)
T 3arc_J 6 GRIPLWIVATVAGMGVIVIVGLFFYG 31 (40)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccEEeeeeehhhhhhheeeEEEee
Confidence 55999999777655543 7777765
No 30
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=66.75 E-value=11 Score=26.60 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=27.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El 135 (171)
-.++++.|++|++...|-++.++.+.+-.+.|++||
T Consensus 59 qAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 59 QAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446788888888888888777777766667777765
No 31
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=66.61 E-value=19 Score=25.76 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=12.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
+...|++++++|..|+++++.+......|
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333333
No 32
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.46 E-value=19 Score=22.92 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 108 TEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 108 ~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
.+....+..|+.+...+..+...|++|+..|
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 33
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=66.08 E-value=13 Score=23.29 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 112 ALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 112 a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+++..|..+...+..+|..|..++..|+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666666666666666543
No 34
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=66.03 E-value=7.8 Score=24.65 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
..++...+..|+.+...+..+...|+.|+..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 35
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=65.50 E-value=4.8 Score=24.51 Aligned_cols=18 Identities=11% Similarity=0.503 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 030828 154 VILVGLVGIVLGYVMKKS 171 (171)
Q Consensus 154 V~~v~ll~~llgy~~~~~ 171 (171)
++++++++++++||++++
T Consensus 20 v~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 345556666667777764
No 36
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=65.08 E-value=19 Score=26.00 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=27.2
Q ss_pred hhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 030828 99 ERIEHQDKSTEAR----ALISKLKDEKNNAVQQNNKLRQ 133 (171)
Q Consensus 99 ~~~~l~~kl~ea~----a~I~kL~eE~~~~~~q~~~Lq~ 133 (171)
++++++.|+..+. .+|..|+.|+..++..+..++.
T Consensus 18 E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~ 56 (111)
T 2v66_B 18 EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHK 56 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777776664 5799999999999988888863
No 37
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=64.61 E-value=16 Score=23.00 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 133 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~ 133 (171)
+|+.+..........|..++..+..|+..|++
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 38
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=63.98 E-value=11 Score=24.28 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 113 LISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 113 ~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+..|..+...+..+|..|..+++.|+..
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555666666666666543
No 39
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=62.39 E-value=29 Score=22.45 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=23.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 99 ERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 99 ~~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
++=++|.-|+-+++.|..|..=.+++.+|...+|.++..|
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~L 53 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKL 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 3445666677777777777655555555555554444433
No 40
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=61.76 E-value=26 Score=23.44 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=34.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 142 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~ 142 (171)
+.+|+.+++=...+|..|.+......++..+|+.++..|.++.
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888877777777788888888887663
No 41
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=60.34 E-value=20 Score=19.92 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 114 ISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 114 I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
|..|+.|...+..+...|+=|..-|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 42
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=59.91 E-value=20 Score=22.98 Aligned_cols=33 Identities=6% Similarity=0.129 Sum_probs=26.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
+..+.++...+..|+.+...+..+...|++++.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566788888888898888888889888887754
No 43
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.41 E-value=18 Score=25.60 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
.+..++..|..|+.|++.+.+++..|.-+|+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544443
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=58.62 E-value=32 Score=22.85 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=31.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.+.+..++.++.....++.+|+.++.+.++.+..+++...
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888887777443
No 45
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=58.44 E-value=28 Score=23.45 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.+-.+....+..|+.|...+..+...|+.|+..|+..
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667777777777777777777777777654
No 46
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=57.91 E-value=24 Score=20.08 Aligned_cols=27 Identities=4% Similarity=0.114 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 115 SKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 115 ~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+|.+....++.+|..|+.|.++|+.-
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345555567788888888888877653
No 47
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.84 E-value=18 Score=24.65 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
+.+......+|..+...+.++|..|+.++..|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666777777777888888999988888774
No 48
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=57.50 E-value=18 Score=22.73 Aligned_cols=26 Identities=8% Similarity=0.349 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 113 LISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 113 ~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
.+..+.++...+.++|..|++++..+
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555554443
No 49
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=57.33 E-value=24 Score=28.54 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=34.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
++.+++++....+.+.+.++|+++...+..+-++.++.+|..
T Consensus 173 ~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 173 LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888889999998888888888888888877754
No 50
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=56.53 E-value=26 Score=20.06 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 115 SKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 115 ~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+|.+....++.+|..|+.|.++||.-
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455555667788888888888877653
No 51
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.08 E-value=27 Score=22.16 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 112 ALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 112 a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.|..|..+...+..+|..|+.++..|+..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666665555543
No 52
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=56.02 E-value=17 Score=22.76 Aligned_cols=32 Identities=6% Similarity=0.190 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El 135 (171)
+..+.+....+..|..|...+..++..|++++
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577778888889999999999998887653
No 53
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.87 E-value=34 Score=23.78 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=30.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
++.++.++.++.....++.+|+.++.+.++.+..+++.+
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888887776643
No 54
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=55.40 E-value=26 Score=19.98 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 116 KLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 116 kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+|.+....++.+|..|+.|..+|+.-
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555567778888888888877653
No 55
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.00 E-value=34 Score=24.11 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=18.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNN-------AVQQNNKLRQDLELLR 139 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~-------~~~q~~~Lq~El~~lr 139 (171)
.++.+++.....+.+|++++.. +-.++.++.+||+.|.
T Consensus 16 ~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 16 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555443332 2244445556666554
No 56
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=53.85 E-value=34 Score=24.85 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.++.++.++...-+.++..++.+|..|+.+++.+++.
T Consensus 46 ~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 46 KGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444555567777777777654
No 57
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.84 E-value=15 Score=28.99 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=18.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
.|..+++....+|..|++++.++..+....+
T Consensus 31 ~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 31 VLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4555666666666666666666655554443
No 58
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=53.60 E-value=42 Score=22.86 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+..+|+..++....+..++..+..+|+.|..|+..++.
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666555655666666666666666555543
No 59
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=53.19 E-value=16 Score=25.92 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 114 ISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 114 I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
...|+++++.+.++.+.+++|+..|+.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356777888888888888888888875
No 60
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=53.11 E-value=31 Score=23.94 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=13.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 133 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~ 133 (171)
+|+........++..|.+|+....+++..+++
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 61
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.90 E-value=16 Score=22.85 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 112 ALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 112 a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.+.+|+.|+..+..++..|+++.+.++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666655544
No 62
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=52.42 E-value=26 Score=20.10 Aligned_cols=23 Identities=17% Similarity=0.201 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030828 113 LISKLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 113 ~I~kL~eE~~~~~~q~~~Lq~El 135 (171)
.+...+.+++.+.+||..|.++.
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHH
Confidence 34556667777778888777654
No 63
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.98 E-value=32 Score=24.34 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 111 RALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 111 ~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
..++.+|++++.++.++|.+|+++.+.|.-
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888877765553
No 64
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.85 E-value=35 Score=21.47 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 111 RALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 111 ~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
...|..|..+...+..+|..|+.++..|+..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666655544
No 65
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=51.45 E-value=42 Score=23.23 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 108 TEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 108 ~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+.+.++..|..|+..+.+|+..++.|++.++++
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666666666666655543
No 66
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=50.69 E-value=47 Score=23.56 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 113 LISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 113 ~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.|..|..|+..+..+|+.|.+|-++-++.
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 55556666666777777776666655543
No 67
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=50.68 E-value=21 Score=23.72 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
+......+..|.+|+..+.+++..|++++..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777888888888888777644
No 68
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=50.49 E-value=34 Score=19.59 Aligned_cols=27 Identities=7% Similarity=0.309 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 115 SKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 115 ~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+|.+....++.+|..|..|..+|+.-
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345555567778888888888877653
No 69
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=50.30 E-value=25 Score=23.53 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
.........+|.+|...+.+++..|+++|+.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556667777777788888888877753
No 70
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=50.30 E-value=34 Score=19.55 Aligned_cols=27 Identities=0% Similarity=0.087 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 115 SKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 115 ~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+|.+....++.+|..|+.|.++|+.-
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345555566777888888887777653
No 71
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=50.08 E-value=43 Score=22.94 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
-|.++-.+..+|.+++..+..++..|++++..||
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554444
No 72
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=49.54 E-value=47 Score=22.80 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+..+.+++.+|..++.|+..+.-+...|+.++..++.
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555555555554
No 73
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=49.53 E-value=47 Score=22.51 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 108 TEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 108 ~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
.+....|..|+.|++.++.+++.++.+++.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444455555555555555555554444433
No 74
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=49.52 E-value=18 Score=20.78 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 030828 151 FIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 151 ~~~V~~v~ll~~llgy~~~~ 170 (171)
.|.++++++=.++-||+|+-
T Consensus 14 ~WalllLaINflVAayYFhi 33 (35)
T 1jb0_X 14 FWAVLLLAINFLVAAYYFAA 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 37888888777777898874
No 75
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=49.26 E-value=19 Score=22.53 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=24.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
++.++=|++....+..|.+|...+..++..|+++
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566778888888888888888888888877654
No 76
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=48.35 E-value=53 Score=23.61 Aligned_cols=33 Identities=3% Similarity=0.063 Sum_probs=16.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
++.|+.+|..|...+.+-+.+++.+.++..+++
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~ 58 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHK 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444444444444433
No 77
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=47.66 E-value=50 Score=21.27 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
-++|..+.-..-..|.+|++.+.+..++||.|-..||+
T Consensus 25 SeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 25 SEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 36667777667778888888888888888888777764
No 78
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=47.50 E-value=16 Score=21.28 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=12.1
Q ss_pred CchHHHHHHHHHHHHHHHHHhcC
Q 030828 148 GVSFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 148 G~~~~~V~~v~ll~~llgy~~~~ 170 (171)
|+-+-.++.++|+..++-||++|
T Consensus 15 GiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 15 AVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeehHHHHHHHHHHHHHHHHeec
Confidence 34445555566666554444444
No 79
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=46.49 E-value=40 Score=19.28 Aligned_cols=27 Identities=7% Similarity=0.338 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 115 SKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 115 ~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.+|.+....++.+|..|..|.++|+.-
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 345555567788888888888887753
No 80
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=46.28 E-value=41 Score=21.31 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030828 112 ALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 112 a~I~kL~eE~~~~~~q~~~Lq 132 (171)
.++-.|++|.+.+.+++++++
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~ 30 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMK 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554
No 81
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.22 E-value=49 Score=23.75 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El 135 (171)
..+..+.+.+..|..|+-|+.++..++..|...+
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAI 66 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456677777777777777777777766664433
No 82
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=46.15 E-value=60 Score=22.33 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=28.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
.+.++.++.++.....++.+++.++.+.++.++.+++.
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888888888777776653
No 83
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=45.56 E-value=24 Score=21.60 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNA 124 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~ 124 (171)
.-++|..+|.+.|-.|+.|...+
T Consensus 21 ~Ek~Kvr~Aq~~ILqLkrE~q~L 43 (47)
T 3fga_D 21 NEKSKVKEAQDIILQLRKECYYL 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999998876543
No 84
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=45.52 E-value=49 Score=20.01 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 111 RALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 111 ~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.+++.||+.++....-+|-.||..|..|-
T Consensus 10 asqvvkltkql~eqt~~rv~lq~qlq~ll 38 (48)
T 2kes_A 10 ASQVVKLTKQLKEQTVERVTLQNQLQQFL 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888887766543
No 85
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.74 E-value=53 Score=20.81 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=17.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 133 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~ 133 (171)
.++..+..+.......|..+.+.+..|+..|++
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555543
No 86
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=44.28 E-value=56 Score=20.33 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=20.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
.|.++.+++...|..|..+.+.+.-+.+..++|-.
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~ 42 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAKDDAA 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666655555555555544
No 87
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.61 E-value=56 Score=20.20 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
++.++..++..|......+..-.+..++++..|+
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333333444444443
No 88
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=43.21 E-value=42 Score=18.58 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 114 ISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 114 I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+..|..|...+-.+|-+|.||...|..
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456667777777777778777776653
No 89
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=43.03 E-value=59 Score=25.45 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=18.0
Q ss_pred hhhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARAL----ISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 100 ~~~l~~kl~ea~a~----I~kL~eE~~~~~~q~~~Lq 132 (171)
++.++.|+.....+ |.+|+.|+..+...+..|+
T Consensus 72 ~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 72 VEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444554444433 6666666666666555554
No 90
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.44 E-value=31 Score=25.44 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=28.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
.|+.+..+....|.+|.+|+..+.++.++|+.++...
T Consensus 22 ~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 22 ILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556788888999999888888888888776644
No 91
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=42.37 E-value=67 Score=20.71 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030828 117 LKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 117 L~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.++|+..+.++.+.|+-|++.++
T Consensus 54 ~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555555555555555443
No 92
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.00 E-value=63 Score=22.12 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=27.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.+++.++.+....|..|++++..+..+...++..+..+.
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355667777777778887777777777777776666664
No 93
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.75 E-value=67 Score=22.53 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 105 DKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 105 ~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
..|..++..|.+|..++...-.+..+|++++.
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44566666677776666666666666665555
No 94
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=41.25 E-value=57 Score=25.46 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
++=+-..+..|+++...+.++|++|+.|.+.
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666666655543
No 95
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.26 E-value=78 Score=21.35 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
++.+..+.+..|..|+.++.....++..++.|
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~E 49 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544444444433
No 96
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.05 E-value=61 Score=22.21 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=22.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
..+.++.+....|..|++++..+.++.+.|++++.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677777666666666666665544
No 97
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.03 E-value=52 Score=28.27 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=8.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNA 124 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~ 124 (171)
++.++.+.+.++..|.+++..+
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~ 29 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDT 29 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 98
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=39.93 E-value=75 Score=22.79 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=23.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+|..++.++.+.+....+..+.+..+.++++++...|+.
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666556556666666666666655554
No 99
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=39.07 E-value=50 Score=22.22 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 109 EARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 109 ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
..+..|..|.+..+.+..||..|+
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444444555443
No 100
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=38.83 E-value=50 Score=25.76 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=22.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
+=.+..++.+.+.+|++|...+.+|.++..++++
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666677777777777777777776665554
No 101
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=38.28 E-value=91 Score=21.08 Aligned_cols=6 Identities=33% Similarity=0.805 Sum_probs=2.2
Q ss_pred HHHHHH
Q 030828 162 IVLGYV 167 (171)
Q Consensus 162 ~llgy~ 167 (171)
+++.+|
T Consensus 84 ii~~~~ 89 (91)
T 3hd7_A 84 IIIVYF 89 (91)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 333333
No 102
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.44 E-value=55 Score=23.59 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
.+..+.+.+..|..|+-|+.++..++..|.
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLE 65 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344455555555555555555555555443
No 103
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.78 E-value=41 Score=30.53 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=25.8
Q ss_pred hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKST-EARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 103 l~~kl~-ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
...+++ |++..|.-|+++++..+.+.+.||.-|+.++
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~ 144 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL 144 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 7788888888888887777777775555444
No 104
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.72 E-value=55 Score=28.16 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=19.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+++.++.+++..+..|++++.....+|++|-.++..++.
T Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 21 ALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344444444444444444444444455556556665553
No 105
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.99 E-value=67 Score=21.36 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 108 TEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 108 ~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.+-.+.|..|..+++..-.+.+.|+.+++.++
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444566666666666666667777776554
No 106
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=35.97 E-value=79 Score=22.45 Aligned_cols=32 Identities=6% Similarity=0.002 Sum_probs=21.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
++.|+.++.|-....+.++.|...-.++...+
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~ 63 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFERE 63 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888777777776665544444444
No 107
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.33 E-value=1.1e+02 Score=25.71 Aligned_cols=42 Identities=19% Similarity=0.098 Sum_probs=28.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+..++..+....+.|..|++.+.+...+...|++.+..|+..
T Consensus 14 ~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 14 VRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777778888877777666667777766666554
No 108
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=35.01 E-value=98 Score=20.48 Aligned_cols=29 Identities=7% Similarity=0.280 Sum_probs=12.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
+.+..+.+..|..|+..+.....++..++
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~ 41 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFR 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333333
No 109
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.82 E-value=1e+02 Score=22.42 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
++.|.+.+|..|.+++..+..+.++|+.+-..+.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 4888899999999999888888888887665444
No 110
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.63 E-value=1.3e+02 Score=23.49 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=9.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNNK 130 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~~ 130 (171)
++++++.|--.|++|+.|...+.+|...
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~ 38 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDT 38 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444333
No 111
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=34.46 E-value=68 Score=18.50 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 116 KLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 116 kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+|.+....++.++..|..|..+|+.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444555555566655555553
No 112
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=34.28 E-value=99 Score=21.68 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
..++...+++|..|.++-+.+-+..+.+++.|..+.
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666777776665555555555555555443
No 113
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.14 E-value=18 Score=21.96 Aligned_cols=16 Identities=38% Similarity=0.868 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhcC
Q 030828 155 ILVGLVGIVLGYVMKK 170 (171)
Q Consensus 155 ~~v~ll~~llgy~~~~ 170 (171)
+++.+++++++.|++|
T Consensus 22 ll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 22 LLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhheeh
Confidence 3444555556666654
No 114
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=34.03 E-value=32 Score=18.92 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=7.2
Q ss_pred HHHHHHHHH-HHHHh
Q 030828 155 ILVGLVGIV-LGYVM 168 (171)
Q Consensus 155 ~~v~ll~~l-lgy~~ 168 (171)
-+|+||.|+ .|+++
T Consensus 11 glvalltflafgfwl 25 (32)
T 2lx0_A 11 GLVALLTFLAFGFWL 25 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555 45444
No 115
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.71 E-value=70 Score=18.44 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 117 LKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 117 L~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
|.+....++.++..|+.|.++|+.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333334455555555555555543
No 116
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=33.53 E-value=99 Score=21.76 Aligned_cols=32 Identities=9% Similarity=0.024 Sum_probs=17.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
+.++..++++.-.+|..|=.+|..+.++--.+
T Consensus 14 L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~ 45 (114)
T 3rmi_A 14 LAYLRQSIDNFDITLIHILAERFRCTQAIGRL 45 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666566666555555555554444
No 117
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=33.28 E-value=85 Score=24.88 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDE 120 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE 120 (171)
++.++++.+....++..|
T Consensus 71 l~~e~~el~d~~lR~~AE 88 (213)
T 4ani_A 71 LEAKLSEMEHRYLRLYAD 88 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333344333
No 118
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.70 E-value=1.3e+02 Score=21.27 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=10.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQNN 129 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~~ 129 (171)
+++|+.+|--..++|-+|++++.=|..
T Consensus 7 vEEKyrKAMVsnAQLDNEKsal~YqVd 33 (103)
T 4h22_A 7 VEEKYKKAMVSNAQLDNEKTNFMYQVD 33 (103)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 333444443334444333333333333
No 119
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=32.53 E-value=1.1e+02 Score=20.36 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 111 RALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 111 ~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.-...+......+.++|..|+.++..|+..
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555566777888887777777654
No 120
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=32.14 E-value=37 Score=22.65 Aligned_cols=9 Identities=33% Similarity=0.944 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 030828 155 ILVGLVGIV 163 (171)
Q Consensus 155 ~~v~ll~~l 163 (171)
+++|++||+
T Consensus 46 ~imG~IGfi 54 (74)
T 1rh5_B 46 SLLGIIGYI 54 (74)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444444
No 121
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=31.76 E-value=1e+02 Score=21.24 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=17.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKN 122 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~ 122 (171)
+.+.+..++||...|.++.-|.+
T Consensus 40 i~~ie~~l~EA~ell~qMelE~r 62 (102)
T 1vcs_A 40 VANVEKQLEEARELLEQMDLEVR 62 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999988876654
No 122
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.53 E-value=1.3e+02 Score=21.20 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=28.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
+.++.+...+...+.+|++++.....+...+++++..+-
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888888888888777777777777766443
No 123
>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1
Probab=31.23 E-value=40 Score=23.97 Aligned_cols=58 Identities=17% Similarity=0.375 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCCCceeEEEEEeeCCCCCccccchhhhcccc---Cce-eeEEEeEEEEeCC
Q 030828 1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA---GHV-VEECKLRVIYVSP 58 (171)
Q Consensus 1 ~Qa~~e~Ppd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~---~~~-i~e~KLrVv~~~p 58 (171)
|.-||-.||..+-|..+|+=.+..+++.+..++...+|+... |.. ....-+.|+|..|
T Consensus 2 ~~~~k~lpp~vR~K~RYll~ei~~~~~l~~~~l~~~I~~av~~~fGd~G~~~~~~~v~~f~~ 63 (120)
T 2czv_C 2 MRKLKTLPPTLRDKNRYIAFEIISDGDFTKDEVKELIWKSSLEVLGETGTAIVKPWLIKFDP 63 (120)
T ss_dssp -CCCCCCCTTTSCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEET
T ss_pred ccccCCCCCccccccEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCcchhhccCceEEEEcC
Confidence 456788999999999999999999988777777666654332 110 0011367788765
No 124
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.09 E-value=1.3e+02 Score=20.54 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 117 LKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 117 L~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+..+...+.++|..|+.+++.|...
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555555555555544443
No 125
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.64 E-value=53 Score=26.89 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 105 DKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 105 ~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.++.++..++..|......+..+.+.+++|+..|+..
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554445555555556666655544
No 126
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.27 E-value=1.1e+02 Score=24.21 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=21.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
+..++..++.+...+.+++.++..+..+..++..++..++
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555544333
No 127
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=29.78 E-value=35 Score=22.48 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 030828 151 FIFVILVGLVGIVLG 165 (171)
Q Consensus 151 ~~~V~~v~ll~~llg 165 (171)
+.|++++|++|++|-
T Consensus 22 LifA~vLfi~GI~ii 36 (67)
T 2jp3_A 22 LIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 467777888888763
No 128
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.75 E-value=1e+02 Score=26.63 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=10.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKDEKNNAVQQN 128 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~eE~~~~~~q~ 128 (171)
|++.+.+.+..+.+|.++......++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~ 33 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAEL 33 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333333
No 129
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.74 E-value=1.3e+02 Score=20.43 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=27.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
..++.+.......|.+|.+++.....+-..++..+..+
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888887777777777777665543
No 130
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.69 E-value=1.2e+02 Score=33.33 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=31.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
..+.++++++..+.|.+|+++.+.+.+|.+.|+.|++...++
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777788888888888888888888777754443
No 131
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=29.51 E-value=1.7e+02 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=11.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhcC
Q 030828 148 GVSFIFVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 148 G~~~~~V~~v~ll~~llgy~~~~ 170 (171)
||++ ++++++++++++.++|++
T Consensus 338 Gy~~-~l~~m~~i~~~~~~~Fkr 359 (363)
T 2iub_A 338 GYPV-VLAVMGVIAVIMVVYFKK 359 (363)
T ss_dssp -CHH-HHHHHHHHHHHHHTTTTS
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH
Confidence 4543 334455566666666665
No 132
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.47 E-value=1.4e+02 Score=21.15 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNN 129 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~ 129 (171)
+.+++.+|..++.++..+.-|..
T Consensus 22 I~~LR~qid~~~~e~a~l~leld 44 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERD 44 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333333333333
No 133
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=29.35 E-value=71 Score=21.77 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNK 130 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~ 130 (171)
|..+..+|..|+.|...+.++..+
T Consensus 34 L~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 34 LKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888777666555443
No 134
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.95 E-value=85 Score=26.67 Aligned_cols=8 Identities=25% Similarity=0.127 Sum_probs=3.5
Q ss_pred EEEeeCCC
Q 030828 20 QSVKTNDG 27 (171)
Q Consensus 20 QSv~v~~~ 27 (171)
..+.|+.+
T Consensus 276 ~~~~I~~~ 283 (471)
T 3mq9_A 276 LSAGINAA 283 (471)
T ss_dssp EEEEEBSS
T ss_pred eEEEEECC
Confidence 34444443
No 135
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.76 E-value=37 Score=22.62 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHH
Q 030828 151 FIFVILVGLVGIVLG 165 (171)
Q Consensus 151 ~~~V~~v~ll~~llg 165 (171)
+.|++++|++|++|-
T Consensus 21 LifA~vLfi~GI~ii 35 (72)
T 2jo1_A 21 LVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 466777777777753
No 136
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.39 E-value=1.2e+02 Score=20.64 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030828 113 LISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 113 ~I~kL~eE~~~~~~q~~~L 131 (171)
.|..+.+|++.+..+|+.|
T Consensus 46 ~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 46 EIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555544
No 137
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=28.12 E-value=47 Score=22.52 Aligned_cols=9 Identities=44% Similarity=0.914 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 030828 155 ILVGLVGIV 163 (171)
Q Consensus 155 ~~v~ll~~l 163 (171)
+++|++||+
T Consensus 59 ~imG~IGfi 67 (80)
T 2ww9_B 59 IAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 138
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.88 E-value=1.6e+02 Score=20.77 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=18.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
.|+.+++.+..+-.+|+......-.+...|..|++.|+..
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 4455555554444444443333333444445555555543
No 139
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=27.78 E-value=51 Score=21.08 Aligned_cols=9 Identities=56% Similarity=1.320 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 030828 155 ILVGLVGIV 163 (171)
Q Consensus 155 ~~v~ll~~l 163 (171)
+++|++||+
T Consensus 42 ~i~G~iGf~ 50 (61)
T 3mp7_B 42 ILIGLIGML 50 (61)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 140
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.59 E-value=98 Score=21.12 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 109 EARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 109 ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
+....|..|.+|++.+..+|..|+
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888887775
No 141
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=27.43 E-value=1.1e+02 Score=25.76 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030828 116 KLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 116 kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
.+.|.++.+.++.++|+++...|
T Consensus 14 ~~~e~r~~lr~~~eql~~~i~~L 36 (302)
T 3ibp_A 14 NAREERMALRQEQEQLQSRIQSL 36 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 142
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.39 E-value=1.5e+02 Score=22.42 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=6.8
Q ss_pred hhhhhHHHHHHHHHHHH
Q 030828 103 HQDKSTEARALISKLKD 119 (171)
Q Consensus 103 l~~kl~ea~a~I~kL~e 119 (171)
|+..+......|..|.+
T Consensus 73 L~~El~~l~~ki~dLee 89 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKE 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 143
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=26.77 E-value=1.2e+02 Score=24.82 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=23.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD---LELLR 139 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E---l~~lr 139 (171)
+++..+.+....+..|.++++.+..+...|++. ++.|.
T Consensus 96 ~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 96 EAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 344456666666677767666676777777666 55444
No 144
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.68 E-value=2.1e+02 Score=23.33 Aligned_cols=16 Identities=13% Similarity=0.503 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhcC
Q 030828 155 ILVGLVGIVLGYVMKK 170 (171)
Q Consensus 155 ~~v~ll~~llgy~~~~ 170 (171)
++++++++++.++|+|
T Consensus 320 ~~m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 320 ALMVVIIMIFVYIFRR 335 (339)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555566665
No 145
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.36 E-value=1.7e+02 Score=22.48 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 104 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 104 ~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
..+..-+..++.+++.-.....-+|++|++.+..|.
T Consensus 96 q~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 96 QARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444433444445555554444443
No 146
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.11 E-value=97 Score=17.63 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 116 KLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 116 kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
+|.+....++.+|..|..|.++|+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445566777777777776664
No 147
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.85 E-value=1.5e+02 Score=19.82 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 030828 112 ALISKLKDEKNN 123 (171)
Q Consensus 112 a~I~kL~eE~~~ 123 (171)
.+|..++.++..
T Consensus 7 ~qi~~l~~e~~~ 18 (86)
T 3swk_A 7 RQVDQLTNDKAR 18 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhHHH
Confidence 333333333333
No 148
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=25.80 E-value=1.1e+02 Score=20.43 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=11.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEK 121 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~ 121 (171)
++.||++..|....+++|..|.
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN 38 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLEREN 38 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555543
No 149
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.76 E-value=1.4e+02 Score=19.96 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=19.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
.++.+.......|.+|.++......+-..++..
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777766665555555554443
No 150
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.73 E-value=83 Score=26.46 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=26.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
..++++...+.++|..|++.+.++..+...|++.+..|..+
T Consensus 7 ~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 7 MKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp ---CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777778888777777666666676666666544
No 151
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.69 E-value=97 Score=17.50 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 117 LKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 117 L~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
|.+....++.++..|..|.++|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333334455555555555555543
No 152
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=25.02 E-value=47 Score=22.25 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 030828 151 FIFVILVGLVGIVLG 165 (171)
Q Consensus 151 ~~~V~~v~ll~~llg 165 (171)
+.|.+++|++||+|-
T Consensus 24 LifA~vLfi~GI~ii 38 (74)
T 2zxe_G 24 LIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 467777888888763
No 153
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.98 E-value=1e+02 Score=17.53 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 117 LKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 117 L~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
|.+....++.++..|..|+.+|+.
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333334455556666666665553
No 154
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=24.96 E-value=1.3e+02 Score=23.17 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 105 DKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 105 ~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
...++.+.+|.+|.+++.....+++.++++|+.
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777788888888763
No 155
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=24.79 E-value=80 Score=21.26 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=18.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q 030828 102 EHQDKSTEARALISKLKDEKNN-------AVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~-------~~~q~~~Lq~El~~lr~~ 141 (171)
.++....+.+..+..|+.|++. .++-.+.||-+|+.+|+.
T Consensus 9 ~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqa 55 (79)
T 1tu3_F 9 TVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQA 55 (79)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677778888888888754 233345666677777754
No 156
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.23 E-value=1.5e+02 Score=23.55 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030828 111 RALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 111 ~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
...|..|.+|++.+..+|..|+
T Consensus 121 h~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 121 HKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666554
No 157
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=24.19 E-value=34 Score=23.87 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 030828 153 FVILVGLVGIVLGYVMKK 170 (171)
Q Consensus 153 ~V~~v~ll~~llgy~~~~ 170 (171)
+++++.+++++++|++.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~ 81 (163)
T 2f95_B 64 LIILLGINLGLVAATLGG 81 (163)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555556666543
No 158
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=24.14 E-value=1.7e+02 Score=19.74 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLELLRR 140 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~ 140 (171)
|.+.++.|-.+-.++-.++.+|..+-++...++.
T Consensus 19 L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~ 52 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKK 52 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555665555555555666555555554443
No 159
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.06 E-value=73 Score=25.54 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=13.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKN---NAVQQNNKLRQD 134 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~---~~~~q~~~Lq~E 134 (171)
.+.++..+++.++..|+.++. .+.+||++|++-
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLKES 58 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544322 234445555443
No 160
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=23.96 E-value=63 Score=19.94 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=13.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDE 120 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE 120 (171)
.++++..+.+++..|.+|.+|
T Consensus 16 ~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 16 LEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 345666666676667666664
No 161
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=23.76 E-value=74 Score=22.66 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 030828 106 KSTEARALISKLKDEKNNAVQQ 127 (171)
Q Consensus 106 kl~ea~a~I~kL~eE~~~~~~q 127 (171)
=|.+|..+|..|+.+...+..+
T Consensus 68 IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 68 ILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888877666543
No 162
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=23.73 E-value=1.1e+02 Score=17.40 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 115 SKLKDEKNNAVQQNNKLRQDLELL 138 (171)
Q Consensus 115 ~kL~eE~~~~~~q~~~Lq~El~~l 138 (171)
.+|-.|...+.+.+.+|.+.++.|
T Consensus 10 ~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 10 QKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555556666666666665543
No 163
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=23.41 E-value=83 Score=18.63 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=12.2
Q ss_pred CCchHHHHHHHHHHHHH
Q 030828 147 GGVSFIFVILVGLVGIV 163 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~l 163 (171)
.++|.|++++-.+.|++
T Consensus 6 ~~vp~wiIi~s~l~GLl 22 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLL 22 (42)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHH
Confidence 57898887766666655
No 164
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=23.08 E-value=1.8e+02 Score=19.81 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=19.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLR 132 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq 132 (171)
++++..++++.-.+|..|=++|..+.++--.++
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K 39 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAK 39 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666655554443
No 165
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=23.05 E-value=94 Score=16.40 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030828 116 KLKDEKNNAVQQNNKLRQDL 135 (171)
Q Consensus 116 kL~eE~~~~~~q~~~Lq~El 135 (171)
+|++|...+..+.+.|+.|.
T Consensus 4 qlkdevgelkgevralkdev 23 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHH
Confidence 34444444444555554443
No 166
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.81 E-value=1.2e+02 Score=23.68 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQD 134 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~E 134 (171)
+.-+...|+.|+.+...+.+||++|++|
T Consensus 156 i~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 156 ICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555655555555556555543
No 167
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=22.47 E-value=75 Score=25.47 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q 030828 107 STEARALISKLKDEKNNAVQQNNKL---RQDLELLRRE 141 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~L---q~El~~lr~~ 141 (171)
+..+.++..+|++|+..+..+..++ ++|..+||+.
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESEVADLKKENKDLKES 58 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666777777776665554433 4566677764
No 168
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.06 E-value=67 Score=20.13 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=11.8
Q ss_pred CCchHHHHHHHHHHHHH
Q 030828 147 GGVSFIFVILVGLVGIV 163 (171)
Q Consensus 147 ~G~~~~~V~~v~ll~~l 163 (171)
.++|+|++++-.+.|++
T Consensus 8 ~~vp~wiIi~svl~GLl 24 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLL 24 (54)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHH
Confidence 57898887666665555
No 169
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.80 E-value=1.6e+02 Score=20.80 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 111 RALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 111 ~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
...+.+..++...+..+...|+.|+...|
T Consensus 88 ~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 88 KKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444445555555666665543
No 170
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.53 E-value=1.5e+02 Score=19.96 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030828 112 ALISKLKDEKNNAVQQNNKLRQ 133 (171)
Q Consensus 112 a~I~kL~eE~~~~~~q~~~Lq~ 133 (171)
..|..+.+|++.+..+|..|++
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666643
No 171
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.48 E-value=2.3e+02 Score=20.39 Aligned_cols=41 Identities=7% Similarity=0.059 Sum_probs=31.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 141 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~ 141 (171)
+.++.++..+...+.+|++.+.....+...+...+..+.+.
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888888877777777777766554
No 172
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=21.41 E-value=46 Score=18.59 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q 030828 152 IFVILVGLVGIVL 164 (171)
Q Consensus 152 ~~V~~v~ll~~ll 164 (171)
.++.++|++|+++
T Consensus 16 i~a~vLfi~gi~i 28 (31)
T 3n2f_G 16 IFAALAFIVGLII 28 (31)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4567777777775
No 173
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.29 E-value=1.6e+02 Score=20.75 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=18.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKL 131 (171)
Q Consensus 100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L 131 (171)
+.+|+.++..+...-.+|.-|++.+......+
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677666666666666665554444433
No 174
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=21.17 E-value=70 Score=18.69 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=13.5
Q ss_pred chHHHHHHHHHH--HHHHHHHh
Q 030828 149 VSFIFVILVGLV--GIVLGYVM 168 (171)
Q Consensus 149 ~~~~~V~~v~ll--~~llgy~~ 168 (171)
+|..+|.++||+ ++.+|.+|
T Consensus 10 LPsI~VPlVglvfPai~Mallf 31 (38)
T 1jb0_I 10 LPWIFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH
T ss_pred CChhhHhHHHHHHHHHHHHHHH
Confidence 677888888887 44455444
No 175
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.98 E-value=1.5e+02 Score=18.06 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
..+...+|-+|.+++.....+++.++++|+.
T Consensus 14 V~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 14 VARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455566667777666666667777777764
No 176
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=20.79 E-value=2e+02 Score=19.29 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=27.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 137 (171)
Q Consensus 102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~ 137 (171)
.+...+--.+.+|-.|.+++.....+++.++++|+.
T Consensus 34 ~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDq 69 (77)
T 3mtu_E 34 QLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQ 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456666677778888888888888888888888763
No 177
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.75 E-value=2.4e+02 Score=21.53 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=24.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 136 (171)
Q Consensus 101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~ 136 (171)
..++....|....+..|...+..+-++...||..|+
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777776665555
No 178
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=20.46 E-value=1.3e+02 Score=18.19 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 030828 107 STEARALISKLKDEKNNA 124 (171)
Q Consensus 107 l~ea~a~I~kL~eE~~~~ 124 (171)
|.|-+.+|+|+++|+=.+
T Consensus 17 L~E~RkElqK~K~EIIeA 34 (45)
T 1use_A 17 LEEVKKELQKVKEEIIEA 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666655433
No 179
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.28 E-value=2.1e+02 Score=19.44 Aligned_cols=29 Identities=7% Similarity=0.212 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828 111 RALISKLKDEKNNAVQQNNKLRQDLELLR 139 (171)
Q Consensus 111 ~a~I~kL~eE~~~~~~q~~~Lq~El~~lr 139 (171)
.++|..|+.++..+..++.++.-|++.++
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666655555443
Done!