BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030831
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKT---KKPPQPSDS---V 60
+ HV+++PYP QGHINP F+ AK L +G IT T + +K + P+ D
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 66
Query: 61 QIDTISDGYD--DGGFSEAESIDAYLQNMEVAGLKTLAELITKYKSSSN--PIDCVVYDA 116
++I DG +G ++ + Q++ LK EL+T+ S+N P+ C+V D
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDC 126
Query: 117 FLYWALDVAKD 127
+ + + A++
Sbjct: 127 CMSFTIQAAEE 137
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 1 MEEKKIHRAHVLIVPYPSQGHINPTFQFAKRLAS-KGLKITLAITNFIYKTKKPPQPSDS 59
MEE K HV I+P P GH+ P +FAKRL GL +T F+ + PP +
Sbjct: 1 MEESKT--PHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVT-----FVIAGEGPPSKAQR 53
Query: 60 VQIDTI 65
+D++
Sbjct: 54 TVLDSL 59
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 424
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45
H+ P GH+NP+ + L ++G +++ AIT+
Sbjct: 14 HISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITD 49
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43
AH+ + + GH+NP+ + + L ++G ++T AI
Sbjct: 8 AHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAI 42
>pdb|3AKJ|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKJ|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|C Chain C, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|D Chain D, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|C Chain C, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|D Chain D, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
Length = 325
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 22 INPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESID 81
INP F + G KI+L N +Y K PP+PS ++ Y +G FSE +
Sbjct: 11 INPKKGFG---GANGNKISLFYNNELYMVKFPPKPSTHKEM-----SYTNGCFSEY--VA 60
Query: 82 AYLQNMEVAGLKTLAELITKYKS 104
++ N GLK L+ YK+
Sbjct: 61 CHIVN--SLGLKVQETLLGTYKN 81
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 98 LITKYKSSSNPIDCVVYDAFLYWALDVAKDM 128
++ + P+ C+V DAF+++A D+A +M
Sbjct: 102 MVMAVAETGRPVSCLVADAFIWFAADMAAEM 132
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSD----SVQIDTI 65
HV ++ +P H P K++A++ K+T + S+ +++ +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNV 74
Query: 66 SDGYDDGGFSEA---ESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWAL 122
DG G S E I +++ M+ + E + + + I C+V DAF ++
Sbjct: 75 HDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAE---TGKNITCLVTDAFFWFGA 131
Query: 123 DVAKDM 128
D+A++M
Sbjct: 132 DLAEEM 137
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGY 69
H+L GH+ P+ LA +G +IT +T ++ + ++ V + D +
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITY-VTTPLFADEVKAAGAEVVLYKSEFDTF 64
Query: 70 DDGGFSEAESIDAYLQ----NMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWA 121
+ E + L VA L+ E + NP D VVYD F + A
Sbjct: 65 HVPEVVKQEDAETQLHLVYVRENVAILRAAEEAL-----GDNPPDLVVYDVFPFIA 115
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 415
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKIT 40
H AH+LIV S G I PT L +G +++
Sbjct: 19 HXAHLLIVNVASHGLILPTLTVVTELVRRGHRVS 52
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKIT 40
H AH+LIV S G I PT L +G +++
Sbjct: 19 HXAHLLIVNVASHGLILPTLTVVTELVRRGHRVS 52
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 20 GHINPTFQFAKRLASKGLKITL---AITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSE 76
GH+ P+ + L++ L N +Y P+ VQ D + GY +GG
Sbjct: 130 GHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDA 189
Query: 77 AESIDAYLQNMEVAGLKTLAELIT 100
+ + V GL L +++
Sbjct: 190 CQGDSGGPLSCPVEGLWYLTGIVS 213
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 20 GHINPTFQFAKRLASKGLKITL---AITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSE 76
GH+ P+ + L++ L N +Y P+ VQ D + GY +GG
Sbjct: 130 GHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDA 189
Query: 77 AESIDAYLQNMEVAGLKTLAELIT 100
+ + V GL L +++
Sbjct: 190 CQGDSGGPLSCPVEGLWYLTGIVS 213
>pdb|2Z1A|A Chain A, Crystal Structure Of 5'-Nucleotidase Precursor From
Thermus Thermophilus Hb8
Length = 552
Score = 27.3 bits (59), Expect = 4.7, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 66 SDGYD-DGGFSEAESIDAYLQNMEV--AGLKTLAELITKYK 103
+ GY D GFS+AES YL+ ++V AGL+ E++ + K
Sbjct: 495 AQGYRVDTGFSDAESFMDYLKELKVVEAGLEGRIEVLNEPK 535
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 20 GHINPTFQFAKRLASKGLKITL---AITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSE 76
GH+ P+ + L++ L N +Y P+ VQ D + GY +GG
Sbjct: 130 GHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPEEPHFVQEDMVCAGYVEGGKDA 189
Query: 77 AESIDAYLQNMEVAGLKTLAELIT 100
+ + V GL L +++
Sbjct: 190 CQGDSGGPLSCPVEGLWYLTGIVS 213
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
Length = 465
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 8 RAHVLIVPYPSQGHINPTFQFAKRLAS--KGLKITLAITNF 46
+ ++ +P P GH+ +FAK L + K L IT+ F
Sbjct: 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKF 49
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 8 RAHVLIVPYPSQGHINPTFQFAKRLAS--KGLKITLAITNF 46
+ ++ +P P GH+ +FAK L + K L IT+ F
Sbjct: 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKF 49
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
Length = 461
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 5 KIHRAHVLIVPYPSQGHINPTFQFAKRLASKGL 37
+I +AH + +P G ++ QFAKR +G+
Sbjct: 73 EIAKAHDVDAIHPGYGFLSENIQFAKRCREEGI 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,870,253
Number of Sequences: 62578
Number of extensions: 184762
Number of successful extensions: 467
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 23
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)