Query 030831
Match_columns 171
No_of_seqs 178 out of 1186
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02173 UDP-glucosyl transfer 100.0 6.7E-36 1.4E-40 249.8 17.8 165 1-169 1-208 (449)
2 PLN02555 limonoid glucosyltran 100.0 2.7E-34 5.9E-39 241.8 18.0 167 1-169 1-228 (480)
3 PLN02152 indole-3-acetate beta 100.0 9.3E-33 2E-37 231.3 16.7 163 7-169 2-211 (455)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.1E-32 6.8E-37 228.2 18.0 122 1-126 1-123 (451)
5 PLN02562 UDP-glycosyltransfera 100.0 7.3E-32 1.6E-36 226.0 17.2 160 6-169 4-220 (448)
6 PLN02670 transferase, transfer 100.0 8.9E-32 1.9E-36 226.1 14.6 115 6-126 4-128 (472)
7 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.6E-31 9.9E-36 222.5 16.0 118 5-126 6-132 (477)
8 PLN02534 UDP-glycosyltransfera 100.0 5.8E-30 1.2E-34 216.1 15.9 116 7-126 7-137 (491)
9 PLN03004 UDP-glycosyltransfera 100.0 8.8E-30 1.9E-34 213.1 16.1 160 9-169 4-223 (451)
10 PLN02992 coniferyl-alcohol glu 100.0 7.8E-30 1.7E-34 214.7 15.6 156 7-169 4-215 (481)
11 PLN00164 glucosyltransferase; 100.0 1.2E-29 2.7E-34 214.2 14.8 157 7-169 2-221 (480)
12 PLN02210 UDP-glucosyl transfer 100.0 3.3E-29 7.2E-34 210.4 16.5 118 1-126 1-121 (456)
13 PLN02764 glycosyltransferase f 100.0 2.8E-29 6E-34 209.9 15.8 114 6-126 3-125 (453)
14 PLN03015 UDP-glucosyl transfer 100.0 3.6E-29 7.8E-34 209.9 16.0 158 8-169 3-219 (470)
15 PLN02448 UDP-glycosyltransfera 100.0 1.1E-28 2.3E-33 207.7 16.8 160 6-169 8-223 (459)
16 PLN02207 UDP-glycosyltransfera 100.0 2.9E-28 6.2E-33 204.7 16.4 163 7-169 2-226 (468)
17 PLN02554 UDP-glycosyltransfera 100.0 1.9E-28 4.2E-33 207.1 15.4 157 8-170 2-226 (481)
18 PLN00414 glycosyltransferase f 100.0 3.9E-28 8.4E-33 203.3 15.5 156 7-169 3-207 (446)
19 PLN02208 glycosyltransferase f 100.0 6.7E-28 1.5E-32 201.7 15.7 156 7-169 3-208 (442)
20 PLN02167 UDP-glycosyltransfera 100.0 1.5E-27 3.3E-32 201.4 15.1 163 7-169 2-230 (475)
21 PLN03007 UDP-glucosyltransfera 99.9 3.1E-26 6.7E-31 193.8 15.8 160 7-169 4-232 (482)
22 cd03784 GT1_Gtf_like This fami 99.4 4.7E-13 1E-17 110.5 8.1 116 9-130 1-128 (401)
23 TIGR01426 MGT glycosyltransfer 99.4 1.9E-12 4E-17 107.0 9.7 111 14-130 1-116 (392)
24 KOG1192 UDP-glucuronosyl and U 99.2 1.7E-11 3.6E-16 104.0 7.4 118 8-126 5-132 (496)
25 PF03033 Glyco_transf_28: Glyc 98.6 3.3E-08 7.2E-13 70.0 3.1 53 11-67 1-53 (139)
26 COG1819 Glycosyl transferases, 97.8 1.7E-05 3.7E-10 66.3 3.8 54 9-66 2-55 (406)
27 PF00201 UDPGT: UDP-glucoronos 97.7 6E-05 1.3E-09 64.2 5.8 59 10-71 2-60 (500)
28 PF13528 Glyco_trans_1_3: Glyc 97.4 0.0024 5.2E-08 51.0 10.7 40 10-51 2-42 (318)
29 TIGR00661 MJ1255 conserved hyp 97.4 0.0012 2.6E-08 53.3 9.0 34 12-46 4-37 (321)
30 PRK12446 undecaprenyldiphospho 96.5 0.1 2.2E-06 42.9 12.6 54 10-66 3-57 (352)
31 PHA03392 egt ecdysteroid UDP-g 96.2 0.0078 1.7E-07 51.9 5.0 37 9-45 21-58 (507)
32 COG0707 MurG UDP-N-acetylgluco 96.0 0.19 4E-06 41.6 11.7 116 11-136 3-123 (357)
33 cd03785 GT1_MurG MurG is an N- 95.6 0.79 1.7E-05 36.8 13.8 54 11-66 2-55 (350)
34 COG4671 Predicted glycosyl tra 94.5 0.4 8.8E-06 39.5 9.0 57 8-67 9-69 (400)
35 cd03818 GT1_ExpC_like This fam 94.1 1.5 3.2E-05 36.1 12.0 93 25-126 13-105 (396)
36 PRK00726 murG undecaprenyldiph 94.0 1.3 2.8E-05 35.8 11.5 37 10-46 3-39 (357)
37 TIGR03590 PseG pseudaminic aci 93.8 0.27 5.9E-06 39.0 6.9 31 17-47 12-42 (279)
38 TIGR01133 murG undecaprenyldip 93.7 1.2 2.5E-05 35.8 10.5 37 10-46 2-38 (348)
39 TIGR02470 sucr_synth sucrose s 88.8 19 0.00041 33.1 16.6 153 9-167 256-465 (784)
40 COG3980 spsG Spore coat polysa 88.3 0.55 1.2E-05 37.6 3.2 33 17-49 13-45 (318)
41 PLN00142 sucrose synthase 87.8 7.4 0.00016 35.8 10.5 19 149-167 470-488 (815)
42 PF13579 Glyco_trans_4_4: Glyc 86.8 0.93 2E-05 31.3 3.5 40 25-66 7-46 (160)
43 TIGR02468 sucrsPsyn_pln sucros 85.5 34 0.00074 32.5 14.1 43 5-47 166-225 (1050)
44 cd03814 GT1_like_2 This family 84.0 2.1 4.6E-05 33.7 4.7 29 19-47 14-42 (364)
45 cd03816 GT1_ALG1_like This fam 81.3 3.3 7.1E-05 34.6 5.0 57 9-66 4-60 (415)
46 cd03817 GT1_UGDG_like This fam 80.8 3.2 7E-05 32.6 4.7 34 15-48 10-43 (374)
47 PF13439 Glyco_transf_4: Glyco 80.6 2.2 4.8E-05 30.0 3.3 29 20-48 13-41 (177)
48 cd02067 B12-binding B12 bindin 80.3 3.5 7.6E-05 28.0 4.1 36 10-45 1-36 (119)
49 cd03823 GT1_ExpE7_like This fa 79.6 27 0.00058 27.2 10.6 30 19-48 15-44 (359)
50 cd03808 GT1_cap1E_like This fa 79.5 2.9 6.3E-05 32.5 4.0 53 11-66 2-54 (359)
51 cd04962 GT1_like_5 This family 78.5 3.2 6.9E-05 33.3 4.0 37 10-46 2-39 (371)
52 cd03800 GT1_Sucrose_synthase T 78.4 3.8 8.2E-05 33.1 4.4 48 19-66 21-68 (398)
53 cd02069 methionine_synthase_B1 78.1 8.6 0.00019 29.4 6.0 42 7-48 87-128 (213)
54 PRK02261 methylaspartate mutas 78.0 5.9 0.00013 28.1 4.8 43 7-49 2-44 (137)
55 cd03794 GT1_wbuB_like This fam 76.1 4.7 0.0001 31.7 4.3 30 19-48 14-43 (394)
56 PRK13609 diacylglycerol glucos 74.4 5.9 0.00013 32.4 4.6 37 8-44 4-41 (380)
57 TIGR00215 lpxB lipid-A-disacch 72.7 4.8 0.00011 33.4 3.7 36 9-45 6-41 (385)
58 PF13477 Glyco_trans_4_2: Glyc 72.3 5.7 0.00012 27.2 3.5 50 11-66 2-51 (139)
59 KOG2941 Beta-1,4-mannosyltrans 71.5 14 0.0003 30.8 5.8 62 3-67 7-70 (444)
60 cd03821 GT1_Bme6_like This fam 71.4 7.9 0.00017 30.3 4.5 31 18-48 13-43 (375)
61 cd04955 GT1_like_6 This family 70.7 14 0.0003 29.3 5.8 42 23-66 19-60 (363)
62 TIGR03449 mycothiol_MshA UDP-N 70.1 11 0.00025 30.7 5.4 49 18-66 19-67 (405)
63 cd04951 GT1_WbdM_like This fam 70.0 6.2 0.00013 31.2 3.7 27 19-45 12-38 (360)
64 cd03805 GT1_ALG2_like This fam 68.2 9.6 0.00021 30.9 4.5 23 23-45 17-39 (392)
65 cd02070 corrinoid_protein_B12- 66.4 14 0.00031 27.7 4.8 39 8-46 82-120 (201)
66 PRK10307 putative glycosyl tra 65.4 14 0.0003 30.5 4.9 22 25-46 21-42 (412)
67 cd03806 GT1_ALG11_like This fa 65.0 82 0.0018 26.3 10.7 26 23-48 18-45 (419)
68 TIGR02370 pyl_corrinoid methyl 64.7 16 0.00034 27.5 4.7 42 7-48 83-124 (197)
69 cd01635 Glycosyltransferase_GT 64.4 13 0.00028 27.0 4.2 26 18-43 12-37 (229)
70 PF09314 DUF1972: Domain of un 64.3 14 0.00031 27.6 4.3 39 26-66 24-62 (185)
71 PF02310 B12-binding: B12 bind 62.9 21 0.00046 23.8 4.8 37 10-46 2-38 (121)
72 cd03820 GT1_amsD_like This fam 62.0 18 0.0004 27.8 4.9 30 19-48 13-42 (348)
73 PLN02871 UDP-sulfoquinovose:DA 61.8 18 0.00038 30.6 5.0 40 7-46 57-101 (465)
74 cd03802 GT1_AviGT4_like This f 60.5 17 0.00036 28.5 4.4 27 20-46 20-46 (335)
75 cd03795 GT1_like_4 This family 59.5 18 0.00039 28.5 4.5 31 18-48 13-43 (357)
76 PF08897 DUF1841: Domain of un 58.0 7.9 0.00017 27.6 1.9 18 17-34 57-74 (137)
77 cd03811 GT1_WabH_like This fam 56.6 24 0.00051 27.1 4.6 32 17-48 10-41 (353)
78 cd02071 MM_CoA_mut_B12_BD meth 56.2 26 0.00056 24.0 4.3 37 10-46 1-37 (122)
79 COG5148 RPN10 26S proteasome r 53.9 41 0.00088 25.5 5.1 40 7-46 107-146 (243)
80 cd03825 GT1_wcfI_like This fam 52.9 27 0.00058 27.6 4.5 38 10-47 2-41 (365)
81 PF00070 Pyr_redox: Pyridine n 51.4 24 0.00053 21.9 3.3 21 25-45 11-31 (80)
82 COG4081 Uncharacterized protei 49.5 18 0.00039 25.6 2.5 32 20-51 16-47 (148)
83 PF02441 Flavoprotein: Flavopr 49.4 35 0.00076 23.5 4.1 40 11-51 3-42 (129)
84 PRK00025 lpxB lipid-A-disaccha 49.4 23 0.0005 28.7 3.7 34 10-44 3-36 (380)
85 PF04127 DFP: DNA / pantothena 48.8 21 0.00046 26.6 3.1 32 13-46 22-53 (185)
86 PRK05749 3-deoxy-D-manno-octul 48.3 92 0.002 25.8 7.2 31 11-41 52-84 (425)
87 PF12146 Hydrolase_4: Putative 47.9 42 0.00091 21.2 3.9 33 10-42 17-49 (79)
88 PF07881 Fucose_iso_N1: L-fuco 47.2 1.2E+02 0.0025 22.5 6.8 61 59-126 5-67 (171)
89 cd03801 GT1_YqgM_like This fam 47.0 33 0.00073 26.4 4.1 30 19-48 14-43 (374)
90 PTZ00445 p36-lilke protein; Pr 46.9 26 0.00056 27.0 3.2 28 19-46 73-101 (219)
91 PF07131 DUF1382: Protein of u 45.7 31 0.00066 20.8 2.7 9 59-67 23-31 (61)
92 cd01452 VWA_26S_proteasome_sub 45.4 85 0.0018 23.5 5.8 36 10-45 110-145 (187)
93 PF13450 NAD_binding_8: NAD(P) 44.8 31 0.00068 21.0 2.9 20 26-45 9-28 (68)
94 cd03796 GT1_PIG-A_like This fa 43.8 26 0.00056 28.8 3.2 27 20-46 15-41 (398)
95 PF04244 DPRP: Deoxyribodipyri 43.7 24 0.00052 27.2 2.7 27 20-46 46-72 (224)
96 PF03720 UDPG_MGDP_dh_C: UDP-g 43.6 33 0.00072 22.8 3.2 23 23-45 17-39 (106)
97 PF00289 CPSase_L_chain: Carba 43.0 24 0.00052 23.9 2.4 29 14-44 77-105 (110)
98 cd00861 ProRS_anticodon_short 42.9 51 0.0011 20.8 3.9 34 10-43 3-38 (94)
99 COG2185 Sbm Methylmalonyl-CoA 42.4 57 0.0012 23.4 4.2 38 6-43 10-47 (143)
100 COG0162 TyrS Tyrosyl-tRNA synt 41.3 31 0.00067 29.1 3.2 27 19-46 48-74 (401)
101 COG1484 DnaC DNA replication p 40.9 40 0.00087 26.4 3.6 44 9-52 106-149 (254)
102 PF08026 Antimicrobial_5: Bee 40.9 4.1 8.9E-05 21.8 -1.3 17 14-30 16-32 (39)
103 PF08323 Glyco_transf_5: Starc 40.4 28 0.00062 26.9 2.7 22 25-46 22-43 (245)
104 PF02702 KdpD: Osmosensitive K 40.0 57 0.0012 25.0 4.1 39 7-45 4-42 (211)
105 TIGR00064 ftsY signal recognit 39.9 63 0.0014 25.6 4.6 37 10-46 74-110 (272)
106 cd02034 CooC The accessory pro 39.9 87 0.0019 21.3 4.8 37 10-46 1-37 (116)
107 cd03791 GT1_Glycogen_synthase_ 39.7 29 0.00063 29.2 2.9 22 25-46 22-43 (476)
108 KOG2585 Uncharacterized conser 39.5 74 0.0016 27.2 5.1 38 7-45 265-302 (453)
109 PF08384 NPP: Pro-opiomelanoco 39.3 8.8 0.00019 21.8 -0.2 10 16-25 35-44 (45)
110 PF01380 SIS: SIS domain SIS d 39.0 75 0.0016 21.2 4.5 38 11-48 55-92 (131)
111 cd03819 GT1_WavL_like This fam 38.7 45 0.00097 26.3 3.7 26 20-45 11-36 (355)
112 PF02142 MGS: MGS-like domain 38.2 33 0.00071 22.3 2.4 35 25-65 2-36 (95)
113 TIGR00234 tyrS tyrosyl-tRNA sy 38.0 32 0.00069 28.7 2.8 26 19-45 46-71 (377)
114 cd01421 IMPCH Inosine monophos 37.7 31 0.00068 25.9 2.4 41 25-71 13-55 (187)
115 PRK08305 spoVFB dipicolinate s 37.5 44 0.00095 25.3 3.2 38 10-48 7-45 (196)
116 cd03798 GT1_wlbH_like This fam 37.1 58 0.0013 25.1 4.1 31 18-48 13-43 (377)
117 COG1618 Predicted nucleotide k 36.6 1.8E+02 0.0039 21.7 7.8 41 8-48 5-45 (179)
118 cd03115 SRP The signal recogni 36.4 93 0.002 22.2 4.8 38 11-48 3-40 (173)
119 PRK05986 cob(I)alamin adenolsy 36.4 91 0.002 23.5 4.8 99 7-118 21-125 (191)
120 cd03807 GT1_WbnK_like This fam 36.4 65 0.0014 24.9 4.3 31 16-46 9-39 (365)
121 PF00448 SRP54: SRP54-type pro 36.2 74 0.0016 23.8 4.3 38 11-48 4-41 (196)
122 cd02065 B12-binding_like B12 b 35.8 84 0.0018 20.9 4.3 36 10-45 1-36 (125)
123 PRK09620 hypothetical protein; 35.7 41 0.00089 26.0 2.9 30 14-45 23-52 (229)
124 PF03853 YjeF_N: YjeF-related 35.4 49 0.0011 24.1 3.2 36 7-44 24-60 (169)
125 PLN02891 IMP cyclohydrolase 34.6 32 0.00068 30.2 2.3 41 25-71 35-77 (547)
126 COG1255 Uncharacterized protei 34.3 49 0.0011 23.0 2.7 20 25-44 25-44 (129)
127 PF01316 Arg_repressor: Argini 34.0 27 0.00059 21.8 1.4 22 25-46 22-43 (70)
128 PRK06732 phosphopantothenate-- 33.9 44 0.00096 25.7 2.9 33 11-45 17-49 (229)
129 PRK00654 glgA glycogen synthas 33.9 62 0.0013 27.4 4.0 32 15-46 12-44 (466)
130 cd00860 ThrRS_anticodon ThrRS 32.9 1E+02 0.0022 19.1 4.1 33 10-43 3-35 (91)
131 PRK00771 signal recognition pa 32.9 90 0.0019 26.7 4.7 40 9-48 96-135 (437)
132 cd01988 Na_H_Antiporter_C The 32.9 1.1E+02 0.0023 20.3 4.4 33 12-44 2-35 (132)
133 PLN02846 digalactosyldiacylgly 32.8 91 0.002 26.9 4.8 40 7-46 3-47 (462)
134 KOG2848 1-acyl-sn-glycerol-3-p 32.7 88 0.0019 24.9 4.2 93 4-98 159-258 (276)
135 cd02067 B12-binding B12 bindin 32.4 1E+02 0.0022 20.6 4.2 37 7-43 49-86 (119)
136 KOG4589 Cell division protein 32.1 50 0.0011 25.2 2.7 22 96-119 126-147 (232)
137 TIGR02095 glgA glycogen/starch 32.0 46 0.00099 28.2 2.9 25 23-47 21-45 (473)
138 TIGR02472 sucr_P_syn_N sucrose 31.7 51 0.0011 27.6 3.1 23 23-45 30-54 (439)
139 PF03767 Acid_phosphat_B: HAD 31.1 45 0.00097 25.7 2.4 24 24-47 119-142 (229)
140 cd03812 GT1_CapH_like This fam 30.9 60 0.0013 25.6 3.3 32 17-48 10-41 (358)
141 PF13478 XdhC_C: XdhC Rossmann 30.5 71 0.0015 22.5 3.2 26 18-45 5-30 (136)
142 cd03799 GT1_amsK_like This is 30.4 1.2E+02 0.0027 23.6 5.0 24 23-46 15-38 (355)
143 COG0300 DltE Short-chain dehyd 30.0 52 0.0011 26.1 2.7 19 26-44 20-38 (265)
144 TIGR01680 Veg_Stor_Prot vegeta 30.0 72 0.0016 25.5 3.5 27 21-47 146-172 (275)
145 TIGR01675 plant-AP plant acid 29.8 68 0.0015 24.9 3.3 26 22-47 122-147 (229)
146 PF07015 VirC1: VirC1 protein; 29.8 86 0.0019 24.4 3.8 40 11-50 4-44 (231)
147 cd01983 Fer4_NifH The Fer4_Nif 29.6 1.4E+02 0.003 18.2 4.7 33 11-43 2-34 (99)
148 smart00851 MGS MGS-like domain 29.3 54 0.0012 20.9 2.3 26 25-52 2-27 (90)
149 PF12695 Abhydrolase_5: Alpha/ 28.9 1.6E+02 0.0035 19.6 4.9 34 12-46 3-36 (145)
150 PF02780 Transketolase_C: Tran 28.7 1.4E+02 0.003 20.2 4.4 37 8-46 9-45 (124)
151 PF09001 DUF1890: Domain of un 28.7 58 0.0013 23.2 2.4 29 23-51 14-42 (139)
152 PF12000 Glyco_trans_4_3: Gkyc 28.3 2.4E+02 0.0053 20.7 9.3 86 34-129 1-87 (171)
153 KOG0991 Replication factor C, 28.2 81 0.0017 25.1 3.4 30 5-34 45-74 (333)
154 PF00919 UPF0004: Uncharacteri 28.0 36 0.00079 22.5 1.3 13 152-164 34-46 (98)
155 PRK13604 luxD acyl transferase 27.7 1.9E+02 0.004 23.6 5.5 33 11-43 39-71 (307)
156 COG3433 Aryl carrier domain [S 26.8 36 0.00079 21.4 1.0 21 23-43 32-52 (74)
157 KOG0223 Aquaporin (major intri 26.7 40 0.00086 26.4 1.5 17 19-35 67-83 (238)
158 cd00859 HisRS_anticodon HisRS 26.6 1.3E+02 0.0028 18.3 3.7 34 10-44 3-36 (91)
159 cd00395 Tyr_Trp_RS_core cataly 26.5 60 0.0013 25.7 2.5 24 20-44 16-39 (273)
160 PRK10867 signal recognition pa 26.5 1.3E+02 0.0027 25.8 4.6 39 10-48 102-141 (433)
161 cd03822 GT1_ecORF704_like This 25.7 1.3E+02 0.0028 23.4 4.4 29 19-47 13-41 (366)
162 cd05014 SIS_Kpsf KpsF-like pro 25.5 1.8E+02 0.0038 19.4 4.5 36 13-48 51-86 (128)
163 TIGR00421 ubiX_pad polyprenyl 25.4 91 0.002 23.1 3.2 26 26-51 16-41 (181)
164 TIGR03087 stp1 sugar transfera 25.3 71 0.0015 26.2 2.9 32 14-46 8-40 (397)
165 TIGR01425 SRP54_euk signal rec 24.7 1.7E+02 0.0038 24.9 5.0 39 10-48 102-140 (429)
166 PRK08690 enoyl-(acyl carrier p 24.7 1.9E+02 0.0041 22.1 5.0 37 1-42 1-38 (261)
167 PF01738 DLH: Dienelactone hyd 24.7 1.9E+02 0.0041 21.3 4.9 33 8-41 14-46 (218)
168 smart00382 AAA ATPases associa 24.7 1.2E+02 0.0025 19.7 3.4 41 8-48 2-42 (148)
169 TIGR00959 ffh signal recogniti 24.5 1.5E+02 0.0032 25.3 4.6 39 10-48 101-140 (428)
170 TIGR01007 eps_fam capsular exo 24.4 2E+02 0.0044 21.1 5.0 37 9-45 17-55 (204)
171 PHA02519 plasmid partition pro 24.3 1.7E+02 0.0037 24.5 4.9 36 8-43 105-142 (387)
172 PF00230 MIP: Major intrinsic 24.3 46 0.001 25.2 1.5 16 20-35 71-86 (227)
173 cd02037 MRP-like MRP (Multiple 24.2 1.1E+02 0.0025 21.7 3.5 29 17-45 9-37 (169)
174 PRK13354 tyrosyl-tRNA syntheta 24.1 91 0.002 26.4 3.3 27 20-47 50-76 (410)
175 PRK07533 enoyl-(acyl carrier p 24.1 2.2E+02 0.0048 21.7 5.3 34 8-43 9-43 (258)
176 TIGR02114 coaB_strep phosphopa 24.0 84 0.0018 24.1 2.8 29 13-43 18-46 (227)
177 cd02069 methionine_synthase_B1 23.9 1.4E+02 0.0031 22.6 4.1 38 7-44 138-175 (213)
178 TIGR03127 RuMP_HxlB 6-phospho 23.6 1.8E+02 0.0038 21.0 4.4 35 14-48 77-111 (179)
179 cd00293 USP_Like Usp: Universa 23.6 1.7E+02 0.0037 18.7 4.1 32 13-44 3-35 (130)
180 PRK07576 short chain dehydroge 23.5 2E+02 0.0043 22.0 4.9 31 11-44 11-41 (264)
181 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.4 1.9E+02 0.0041 19.2 4.3 32 16-47 53-84 (126)
182 PLN02211 methyl indole-3-aceta 23.3 2.2E+02 0.0048 22.1 5.2 39 7-46 17-55 (273)
183 cd00805 TyrRS_core catalytic c 23.2 95 0.0021 24.5 3.1 28 19-47 16-43 (269)
184 PF07801 DUF1647: Protein of u 23.1 1.3E+02 0.0028 21.5 3.5 60 7-66 58-120 (142)
185 TIGR00640 acid_CoA_mut_C methy 23.1 1.4E+02 0.0031 20.8 3.7 38 7-44 52-90 (132)
186 PF02558 ApbA: Ketopantoate re 22.9 96 0.0021 21.5 2.8 20 27-46 12-31 (151)
187 TIGR02113 coaC_strep phosphopa 22.9 1.1E+02 0.0023 22.6 3.1 37 15-51 6-42 (177)
188 PLN02939 transferase, transfer 22.8 2.3E+02 0.0051 27.0 5.8 41 7-47 480-526 (977)
189 KOG1209 1-Acyl dihydroxyaceton 22.8 1.6E+02 0.0034 23.1 4.0 37 1-41 1-37 (289)
190 PRK07454 short chain dehydroge 22.7 2.2E+02 0.0047 21.2 4.9 32 10-44 7-38 (241)
191 PLN02275 transferase, transfer 22.7 3.1E+02 0.0067 22.3 6.2 57 8-67 6-63 (371)
192 PF00175 NAD_binding_1: Oxidor 22.7 1.8E+02 0.0038 18.6 4.0 28 22-49 8-37 (109)
193 PRK00881 purH bifunctional pho 22.6 90 0.002 27.3 3.0 42 24-71 16-59 (513)
194 KOG1838 Alpha/beta hydrolase [ 22.5 2.4E+02 0.0053 24.0 5.4 40 7-46 124-164 (409)
195 PRK07313 phosphopantothenoylcy 22.5 1.2E+02 0.0025 22.5 3.3 41 10-51 3-43 (182)
196 PLN03050 pyridoxine (pyridoxam 22.5 97 0.0021 24.2 2.9 34 9-44 61-95 (246)
197 TIGR00355 purH phosphoribosyla 22.2 87 0.0019 27.4 2.8 41 25-71 13-55 (511)
198 KOG2884 26S proteasome regulat 22.1 2.3E+02 0.005 22.1 4.7 38 9-46 109-146 (259)
199 PRK04280 arginine repressor; P 22.1 71 0.0015 22.9 2.0 23 26-48 22-44 (148)
200 TIGR02699 archaeo_AfpA archaeo 22.1 1.3E+02 0.0027 22.3 3.3 35 15-49 5-41 (174)
201 KOG1014 17 beta-hydroxysteroid 22.0 94 0.002 25.3 2.8 18 27-44 64-81 (312)
202 PRK06222 ferredoxin-NADP(+) re 21.8 1.1E+02 0.0024 24.1 3.3 37 9-47 99-135 (281)
203 PF13460 NAD_binding_10: NADH( 21.8 1.1E+02 0.0023 21.8 2.9 28 18-47 6-33 (183)
204 PF10657 RC-P840_PscD: Photosy 21.6 1.5E+02 0.0033 20.7 3.4 40 7-46 45-84 (144)
205 PRK06372 translation initiatio 21.6 92 0.002 24.6 2.6 32 9-45 110-143 (253)
206 PRK13982 bifunctional SbtC-lik 21.4 99 0.0021 26.8 3.0 21 26-46 286-306 (475)
207 PRK10116 universal stress prot 21.3 2.2E+02 0.0048 19.2 4.4 33 12-44 6-39 (142)
208 COG0467 RAD55 RecA-superfamily 21.3 1.7E+02 0.0036 22.6 4.1 43 9-51 24-66 (260)
209 cd00561 CobA_CobO_BtuR ATP:cor 21.2 2.9E+02 0.0064 20.0 5.1 35 9-43 3-37 (159)
210 TIGR00708 cobA cob(I)alamin ad 21.0 3.3E+02 0.0071 20.1 5.4 36 8-43 5-40 (173)
211 TIGR02193 heptsyl_trn_I lipopo 21.0 2.1E+02 0.0045 22.7 4.7 54 10-66 1-57 (319)
212 TIGR03264 met_CoM_red_C methyl 20.9 1.6E+02 0.0035 22.1 3.6 34 10-43 35-69 (194)
213 PRK08335 translation initiatio 20.9 94 0.002 24.8 2.6 35 7-46 134-170 (275)
214 PRK11064 wecC UDP-N-acetyl-D-m 20.8 1.2E+02 0.0026 25.6 3.3 28 16-45 8-35 (415)
215 cd00550 ArsA_ATPase Oxyanion-t 20.7 1.9E+02 0.0041 22.4 4.3 38 11-48 3-40 (254)
216 PF13614 AAA_31: AAA domain; P 20.7 2.2E+02 0.0047 19.6 4.3 34 15-48 8-41 (157)
217 PRK14974 cell division protein 20.6 2.1E+02 0.0046 23.5 4.7 38 9-46 141-178 (336)
218 PF08235 LNS2: LNS2 (Lipin/Ned 20.5 98 0.0021 22.6 2.4 29 19-47 16-54 (157)
219 PRK14106 murD UDP-N-acetylmura 20.5 2E+02 0.0042 24.2 4.6 31 10-45 7-37 (450)
220 PRK15043 transcriptional regul 20.4 2.5E+02 0.0053 22.1 4.8 41 8-49 162-202 (243)
221 PRK06997 enoyl-(acyl carrier p 20.3 2.6E+02 0.0056 21.4 5.0 32 9-42 6-38 (260)
222 cd00862 ProRS_anticodon_zinc P 20.2 2.1E+02 0.0046 21.4 4.3 37 7-43 9-50 (202)
223 PRK09361 radB DNA repair and r 20.2 2.7E+02 0.0058 20.8 5.0 35 11-45 26-60 (225)
224 TIGR03029 EpsG chain length de 20.2 2.7E+02 0.006 21.5 5.2 39 7-45 101-141 (274)
225 KOG0224 Aquaporin (major intri 20.2 68 0.0015 26.1 1.6 17 19-35 89-105 (316)
226 PF03807 F420_oxidored: NADP o 20.1 1.8E+02 0.004 18.2 3.6 26 18-45 6-34 (96)
No 1
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.7e-36 Score=249.81 Aligned_cols=165 Identities=55% Similarity=0.916 Sum_probs=126.4
Q ss_pred CccccCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEeccCCCCCCCCCCcccH
Q 030831 1 MEEKKIHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESI 80 (171)
Q Consensus 1 m~~~~~~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~~~p~~~~~~~~~~ 80 (171)
||+ +++|||+||||+|||+|||++|||+|+++|++|||++|+.+.+++... ..+.|+|+.+|+|+|+++.+...+.
T Consensus 1 ~~~---~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-~~~~i~~~~ipdglp~~~~~~~~~~ 76 (449)
T PLN02173 1 MEK---MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-PSSPISIATISDGYDQGGFSSAGSV 76 (449)
T ss_pred CCC---CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-CCCCEEEEEcCCCCCCcccccccCH
Confidence 555 468999999999999999999999999999999999999987766432 1245999999999987332333445
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCC-----------------------------
Q 030831 81 DAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMP----------------------------- 129 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP----------------------------- 129 (171)
..++..+...+.++++++++++..+++|++|||+|+|++|+.+||+ ++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~~~~~~~ 156 (449)
T PLN02173 77 PEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNGSLTLPI 156 (449)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccCCccCCC
Confidence 5677777767788999999886433345699999999999999999 122
Q ss_pred ------------CCccCCCCChHHHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 130 ------------SFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 130 ------------~~~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
+++......+..++.+.+.+++.++++|||+|||+|||++
T Consensus 157 pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 208 (449)
T PLN02173 157 KDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLH 208 (449)
T ss_pred CCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHH
Confidence 1111111122345566777888899999999999999985
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.7e-34 Score=241.82 Aligned_cols=167 Identities=30% Similarity=0.617 Sum_probs=123.3
Q ss_pred CccccCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCC--------C--CCCCceEEeccCCCC
Q 030831 1 MEEKKIHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPP--------Q--PSDSVQIDTISDGYD 70 (171)
Q Consensus 1 m~~~~~~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~--------~--~~~~i~f~~~~~~~p 70 (171)
|++.. .++|||++|||+|||+|||++|||+|++||+.|||++|+.+++++.+. . ....++|..+|+|+|
T Consensus 1 ~~~~~-~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp 79 (480)
T PLN02555 1 MESES-SLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWA 79 (480)
T ss_pred CCCCC-CCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCC
Confidence 66653 678999999999999999999999999999999999999887655421 0 012377888888887
Q ss_pred CCCCCCcccHHHHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCCC-----------------
Q 030831 71 DGGFSEAESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPSF----------------- 131 (171)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~~----------------- 131 (171)
+ +.+...+...++..+...+.++++++++++..+++|++|||+|+|++|+.+||+ .+|.+
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 80 E-DDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred C-CcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 6 323333455566766666778999999887533456799999999999999999 12211
Q ss_pred --------------------------------ccCCCCChHHHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 132 --------------------------------IGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 132 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
+......+..++.+.+..++.++++|||+|||+|||++
T Consensus 159 ~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 228 (480)
T PLN02555 159 HGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKE 228 (480)
T ss_pred hcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHH
Confidence 00000112234556677788899999999999999985
No 3
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=9.3e-33 Score=231.25 Aligned_cols=163 Identities=31% Similarity=0.572 Sum_probs=117.1
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEecccc-ccccCCC-CCCCCceEEeccCCCCCCCCCCcccHHHH
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLAS-KGLKITLAITNFI-YKTKKPP-QPSDSVQIDTISDGYDDGGFSEAESIDAY 83 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~-~g~~VT~~~t~~~-~~~~~~~-~~~~~i~f~~~~~~~p~~~~~~~~~~~~~ 83 (171)
+++||++||||+|||+|||++|||+|++ +|++|||++|+.+ .+++.+. ...++|+|+.++||+|++......+...+
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~ 81 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNR 81 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHH
Confidence 3579999999999999999999999996 7999999999965 3332221 11236999999999887311223345556
Q ss_pred HHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh-------------------------------------
Q 030831 84 LQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK------------------------------------- 126 (171)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~------------------------------------- 126 (171)
+..+...+.++++++++++...++|++|||+|+|++|+.+||+
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~iPglp 161 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNNSVFEFPNLP 161 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccCCCeeecCCCC
Confidence 6666666778999999887533457899999999999999999
Q ss_pred -----hCCCCccCCCCChHHHHHHHHHhhhcCC--CCEEEEcchhhhcCC
Q 030831 127 -----DMPSFIGVQGQYPAYFEMVLNQFSNADR--ADLVLVNTFYKLESQ 169 (171)
Q Consensus 127 -----dlP~~~~~~~~~~~~~~~~~~~~~~~~~--a~gvlvNTf~eLE~~ 169 (171)
|+|+++......+..++.+.+..+..++ ++|||+|||+|||++
T Consensus 162 ~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 211 (455)
T PLN02152 162 SLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPE 211 (455)
T ss_pred CCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHH
Confidence 2222222111122234555566665543 579999999999986
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.1e-32 Score=228.19 Aligned_cols=122 Identities=35% Similarity=0.553 Sum_probs=96.1
Q ss_pred CccccCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEeccCCCCCCCCCCcccH
Q 030831 1 MEEKKIHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESI 80 (171)
Q Consensus 1 m~~~~~~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~~~p~~~~~~~~~~ 80 (171)
||++ ++++|||+||||+|||+|||++|||+|++||++|||++|+.+..+... ..++|+|+.+|+|+|+++.+. .+.
T Consensus 1 ~~~~-~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~--~~~~i~~~~ip~glp~~~~~~-~~~ 76 (451)
T PLN02410 1 MEEK-PARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSD--DFTDFQFVTIPESLPESDFKN-LGP 76 (451)
T ss_pred CCcC-CCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccccc--CCCCeEEEeCCCCCCcccccc-cCH
Confidence 8865 488899999999999999999999999999999999999988632211 123699999999988732222 223
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhc-CCCCccEEEeCCccccHHHHHh
Q 030831 81 DAYLQNMEVAGLKTLAELITKYKS-SSNPIDCVVYDAFLYWALDVAK 126 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~iI~D~~~~w~~~vA~ 126 (171)
..++..+...+.++++++++++.. .+++++|||+|+|++|+.+||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~ 123 (451)
T PLN02410 77 IEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAK 123 (451)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHH
Confidence 356666666667789999988642 3356899999999999999998
No 5
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=7.3e-32 Score=226.04 Aligned_cols=160 Identities=26% Similarity=0.458 Sum_probs=118.5
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCC-CCCCCceEEeccCCCCCCCCCCcccHHHHH
Q 030831 6 IHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPP-QPSDSVQIDTISDGYDDGGFSEAESIDAYL 84 (171)
Q Consensus 6 ~~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~-~~~~~i~f~~~~~~~p~~~~~~~~~~~~~~ 84 (171)
..++|||++|||+|||+|||++|||+|+++|++|||++|+.+.+++.+. ...++|+|+.+|+|+++ +. ..++..++
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~-~~--~~~~~~l~ 80 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDD-DP--PRDFFSIE 80 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCC-Cc--cccHHHHH
Confidence 3568999999999999999999999999999999999999988765432 11235999999988764 22 12344455
Q ss_pred HHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCCC-------------------------------
Q 030831 85 QNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPSF------------------------------- 131 (171)
Q Consensus 85 ~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~~------------------------------- 131 (171)
..+...+.++++++++++... +|++|||+|+|++|+.+||+ ++|.+
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCP 159 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccc
Confidence 555555678899999887532 36799999999999999999 11110
Q ss_pred -----c-cCCC-----------------CChHHHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 132 -----I-GVQG-----------------QYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 132 -----~-~~~~-----------------~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
+ ..++ ..+..++.+.+..+..++++||++|||+|||++
T Consensus 160 ~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 220 (448)
T PLN02562 160 RQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYD 220 (448)
T ss_pred ccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHH
Confidence 0 0000 011235666777788889999999999999984
No 6
>PLN02670 transferase, transferring glycosyl groups
Probab=99.98 E-value=8.9e-32 Score=226.11 Aligned_cols=115 Identities=21% Similarity=0.272 Sum_probs=88.2
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCC--CCCCceEEecc----CCCCCCCCCCccc
Q 030831 6 IHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQ--PSDSVQIDTIS----DGYDDGGFSEAES 79 (171)
Q Consensus 6 ~~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~--~~~~i~f~~~~----~~~p~~~~~~~~~ 79 (171)
+.++|||+||||+|||+|||++|||+|++||++|||++|+.+.+++.+.. ..+.|+|+.+| +|+|+ +.++..+
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~-~~~~~~~ 82 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPS-SAESSTD 82 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCC-Ccccccc
Confidence 35689999999999999999999999999999999999999987654321 12359999998 67776 3233333
Q ss_pred HH----HHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh
Q 030831 80 ID----AYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK 126 (171)
Q Consensus 80 ~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~ 126 (171)
.. .++....+.+.++++++++++ +++|||+|+|++|+.+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~cvI~D~f~~wa~~vA~ 128 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLETS-----KPDWIIYDYASHWLPSIAA 128 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC-----CCcEEEECCcchhHHHHHH
Confidence 32 234444455566777777653 5799999999999999999
No 7
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.97 E-value=4.6e-31 Score=222.51 Aligned_cols=118 Identities=24% Similarity=0.383 Sum_probs=86.7
Q ss_pred cCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCC-CCCCceEEecc----CCCCCCCCCCccc
Q 030831 5 KIHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQ-PSDSVQIDTIS----DGYDDGGFSEAES 79 (171)
Q Consensus 5 ~~~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~-~~~~i~f~~~~----~~~p~~~~~~~~~ 79 (171)
+.+++|||+||||+|||+|||++|||+|+++|++|||++|+.+++++.+.. ..+.|+|+.+| +++|+ |.++..+
T Consensus 6 ~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPd-G~~~~~~ 84 (477)
T PLN02863 6 KPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPS-GVENVKD 84 (477)
T ss_pred cCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCC-CCcChhh
Confidence 346899999999999999999999999999999999999999987765421 12458888765 25665 3333323
Q ss_pred HH----HHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh
Q 030831 80 ID----AYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK 126 (171)
Q Consensus 80 ~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~ 126 (171)
.. ..+......+.++++++++++ +.+++|||+|+|++|+.+||+
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~---~~~p~cvI~D~f~~Wa~dVA~ 132 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSH---PSPPVAIISDMFLGWTQNLAC 132 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC---CCCCeEEEEcCchHhHHHHHH
Confidence 21 223333333456677777654 246799999999999999999
No 8
>PLN02534 UDP-glycosyltransferase
Probab=99.97 E-value=5.8e-30 Score=216.07 Aligned_cols=116 Identities=20% Similarity=0.366 Sum_probs=85.8
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCC-----CCCCceEEecc-----CCCCCCCCCC
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQ-----PSDSVQIDTIS-----DGYDDGGFSE 76 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~-----~~~~i~f~~~~-----~~~p~~~~~~ 76 (171)
++.||+++|||+|||+|||++|||+|++||+.|||++|+.+..++.+.. ....|+|+.+| ||+|+ +.+.
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~-~~~~ 85 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPI-GCEN 85 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCC-Cccc
Confidence 4579999999999999999999999999999999999999876553310 11249999998 67876 3333
Q ss_pred cccHH--HHHHHHH---HHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh
Q 030831 77 AESID--AYLQNME---VAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK 126 (171)
Q Consensus 77 ~~~~~--~~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~ 126 (171)
..+++ .++..+. ..+.+.+++++++. +++++|||+|+|++|+.+||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~ 137 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQ 137 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHH
Confidence 22221 2333322 23456777777643 246899999999999999999
No 9
>PLN03004 UDP-glycosyltransferase
Probab=99.97 E-value=8.8e-30 Score=213.14 Aligned_cols=160 Identities=14% Similarity=0.259 Sum_probs=108.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCC----CeEEEEeccccccccC----CC-CCCCCceEEeccCCCCC-CCCCCcc
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKG----LKITLAITNFIYKTKK----PP-QPSDSVQIDTISDGYDD-GGFSEAE 78 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g----~~VT~~~t~~~~~~~~----~~-~~~~~i~f~~~~~~~p~-~~~~~~~ 78 (171)
.|||+||||+|||+|||++|||+|++|| ++||+++++.+...+. .. ...++|+|+.+|++.+. .+.+...
T Consensus 4 ~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 83 (451)
T PLN03004 4 EAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSRH 83 (451)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccccc
Confidence 5999999999999999999999999998 5555566666543221 11 11246999999987642 1212222
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCCC-------------------------
Q 030831 79 SIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPSF------------------------- 131 (171)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~~------------------------- 131 (171)
+...++..+...+..+++++++++.. ++|++|||+|+|++|+.+||+ ++|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~l~~-~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 162 (451)
T PLN03004 84 HHESLLLEILCFSNPSVHRTLFSLSR-NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPG 162 (451)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHhcCC-CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccccc
Confidence 33334444444567788999988742 346799999999999999999 11210
Q ss_pred --------ccCCC---------------CChHHHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 132 --------IGVQG---------------QYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 132 --------~~~~~---------------~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
+..++ ..+..++++.+..+.+++++|||+|||+|||++
T Consensus 163 ~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~ 223 (451)
T PLN03004 163 KNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENR 223 (451)
T ss_pred cccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHH
Confidence 00000 011234566677778889999999999999985
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.97 E-value=7.8e-30 Score=214.67 Aligned_cols=156 Identities=20% Similarity=0.304 Sum_probs=110.4
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeccccccccCCC-CCCCCceEEeccC----CCCCCCCCCcccH
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLA-SKGLKITLAITNFIYKTKKPP-QPSDSVQIDTISD----GYDDGGFSEAESI 80 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~-~~g~~VT~~~t~~~~~~~~~~-~~~~~i~f~~~~~----~~p~~~~~~~~~~ 80 (171)
.++|||++|||+|||++||++|||+|+ ++|++|||++|+.+.+++.+. ...++|+++.+|+ ++|+.+ .+.
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~----~~~ 79 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS----AHV 79 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC----ccH
Confidence 568999999999999999999999998 799999999999987654221 1123599999985 443211 122
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCCC---------------------------
Q 030831 81 DAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPSF--------------------------- 131 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~~--------------------------- 131 (171)
...+..+...+.++++++++++. .+++|||+|+|++|+.+||+ ++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~ 156 (481)
T PLN02992 80 VTKIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEH 156 (481)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccc
Confidence 22333333445678888887752 36799999999999999999 11210
Q ss_pred ------ccCCC---------------CChHHHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 132 ------IGVQG---------------QYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 132 ------~~~~~---------------~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
+..++ .....++.+.+..++..+|+|||||||+|||++
T Consensus 157 ~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 215 (481)
T PLN02992 157 TVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPK 215 (481)
T ss_pred ccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHH
Confidence 00000 011124566777778889999999999999985
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=99.97 E-value=1.2e-29 Score=214.17 Aligned_cols=157 Identities=16% Similarity=0.215 Sum_probs=110.6
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCC----CeEEEEecccccc----ccCC-----CCCCCCceEEeccCCCCCCC
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKG----LKITLAITNFIYK----TKKP-----PQPSDSVQIDTISDGYDDGG 73 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g----~~VT~~~t~~~~~----~~~~-----~~~~~~i~f~~~~~~~p~~~ 73 (171)
+++|||++|||+|||+|||++|||+|++|| ++|||++|+.+.. ++.+ ......|+|+++|++.++.+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 468999999999999999999999999986 8999999986532 2211 10112599999997643212
Q ss_pred CCCcccHHHHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCC----------------------
Q 030831 74 FSEAESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMP---------------------- 129 (171)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP---------------------- 129 (171)
.+ +...++..+...+.++++++++++. ++++|||+|+|++|+.+||+ ++|
T Consensus 82 ~e---~~~~~~~~~~~~~~~~l~~~L~~l~---~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 82 AA---GVEEFISRYIQLHAPHVRAAIAGLS---CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred cc---cHHHHHHHHHHhhhHHHHHHHHhcC---CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 22 3334555555566778888887762 46799999999999999999 111
Q ss_pred -----------------CC--cc---CC----CCChHHHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 130 -----------------SF--IG---VQ----GQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 130 -----------------~~--~~---~~----~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
.. +. .+ ...+..++++....++.++++|||+|||+|||++
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 221 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPG 221 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHH
Confidence 10 00 00 0011224556666778889999999999999985
No 12
>PLN02210 UDP-glucosyl transferase
Probab=99.96 E-value=3.3e-29 Score=210.38 Aligned_cols=118 Identities=31% Similarity=0.485 Sum_probs=91.0
Q ss_pred CccccCCCceEEEEcCCCCCChHHHHHHHHH--HHhCCCeEEEEeccccccccCCCC-CCCCceEEeccCCCCCCCCCCc
Q 030831 1 MEEKKIHRAHVLIVPYPSQGHINPTFQFAKR--LASKGLKITLAITNFIYKTKKPPQ-PSDSVQIDTISDGYDDGGFSEA 77 (171)
Q Consensus 1 m~~~~~~~~hvv~vp~p~~GHl~P~l~La~~--L~~~g~~VT~~~t~~~~~~~~~~~-~~~~i~f~~~~~~~p~~~~~~~ 77 (171)
|+.+.++++||++||||+|||+||||+|||+ |++||++|||++|+.+++++.+.. ....+++..+|+|+|+ +.+
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~-~~~-- 77 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPK-DDP-- 77 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCC-Ccc--
Confidence 7777778899999999999999999999999 558999999999999887664321 1235888888888886 322
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh
Q 030831 78 ESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK 126 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~ 126 (171)
.+...++..+...+.+.+++++++ .+|+|||+|++++|+.+||+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~vI~D~~~~w~~~vA~ 121 (456)
T PLN02210 78 RAPETLLKSLNKVGAKNLSKIIEE-----KRYSCIISSPFTPWVPAVAA 121 (456)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHhc-----CCCcEEEECCcchhHHHHHH
Confidence 233345555554555566666643 26899999999999999999
No 13
>PLN02764 glycosyltransferase family protein
Probab=99.96 E-value=2.8e-29 Score=209.88 Aligned_cols=114 Identities=22% Similarity=0.309 Sum_probs=83.8
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCC-C--CCceEEecc--CCCCCCCCCCcccH
Q 030831 6 IHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQP-S--DSVQIDTIS--DGYDDGGFSEAESI 80 (171)
Q Consensus 6 ~~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~-~--~~i~f~~~~--~~~p~~~~~~~~~~ 80 (171)
+.++|||+||||+|||+|||++|||+|++||++|||++|+.+.+++.+... . ..++++++| +|+|+ +.+...++
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~-g~e~~~~~ 81 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPV-GTETVSEI 81 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCC-cccccccC
Confidence 467999999999999999999999999999999999999998766543211 1 137777787 67776 32332222
Q ss_pred H----HHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh
Q 030831 81 D----AYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK 126 (171)
Q Consensus 81 ~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~ 126 (171)
. ..+......+.++++++++++ +++|||+|+ ++|+.+||+
T Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~l~~~-----~~~~iV~D~-~~w~~~vA~ 125 (453)
T PLN02764 82 PVTSADLLMSAMDLTRDQVEVVVRAV-----EPDLIFFDF-AHWIPEVAR 125 (453)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHhC-----CCCEEEECC-chhHHHHHH
Confidence 2 223333334456778877653 569999995 899999999
No 14
>PLN03015 UDP-glucosyl transferase
Probab=99.96 E-value=3.6e-29 Score=209.88 Aligned_cols=158 Identities=18% Similarity=0.246 Sum_probs=109.1
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeccccccccC--C----CCCCCCceEEeccCCCCCCCC-CCccc
Q 030831 8 RAHVLIVPYPSQGHINPTFQFAKRLASK-GLKITLAITNFIYKTKK--P----PQPSDSVQIDTISDGYDDGGF-SEAES 79 (171)
Q Consensus 8 ~~hvv~vp~p~~GHl~P~l~La~~L~~~-g~~VT~~~t~~~~~~~~--~----~~~~~~i~f~~~~~~~p~~~~-~~~~~ 79 (171)
++||+++|||+|||+|||++|||+|+++ |++|||++|+.+..++. . ....++|+|+++|++..+ +. +...+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~l~~~~~~ 81 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVD-NLVEPDAT 81 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccc-cCCCCCcc
Confidence 4799999999999999999999999986 99999999887664431 1 101125999999853322 22 11112
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCC-Cc----------------------cC
Q 030831 80 IDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPS-FI----------------------GV 134 (171)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~-~~----------------------~~ 134 (171)
....+..+.+.+.++++++++++. .+++|||+|+|++|+.+||+ .+|+ ++ ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~ 158 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEG 158 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccccc
Confidence 322333344456788999998774 36799999999999999999 3331 00 00
Q ss_pred -----------CC---------------CChHHHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 135 -----------QG---------------QYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 135 -----------~~---------------~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
++ .....+..+.+..++.++++|||+|||+|||++
T Consensus 159 ~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 219 (470)
T PLN03015 159 EYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGN 219 (470)
T ss_pred ccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHH
Confidence 00 001123445566777899999999999999985
No 15
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.96 E-value=1.1e-28 Score=207.69 Aligned_cols=160 Identities=26% Similarity=0.519 Sum_probs=119.1
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeccccccccCCCCCCCCceEEeccCCCCCCCCCCcccHHHH
Q 030831 6 IHRAHVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAY 83 (171)
Q Consensus 6 ~~~~hvv~vp~p~~GHl~P~l~La~~L~~~--g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~~~p~~~~~~~~~~~~~ 83 (171)
..++||+++|||+|||+|||++||++|++| |+.|||++|+.+.+++.+....++|+|+.+|+++|+ +.+...+...+
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~-~~~~~~~~~~~ 86 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPS-ELVRAADFPGF 86 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCC-ccccccCHHHH
Confidence 357899999999999999999999999999 999999999998877654311236999999987765 33323345555
Q ss_pred HHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCCC------------------------------
Q 030831 84 LQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPSF------------------------------ 131 (171)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~~------------------------------ 131 (171)
+..+...+.+.++++++++. .+++|||+|++++|+.++|+ .+|.+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 163 (459)
T PLN02448 87 LEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELS 163 (459)
T ss_pred HHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccc
Confidence 66555556778888888764 36899999999999999998 12210
Q ss_pred ------c-cCCC---------------CChHHHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 132 ------I-GVQG---------------QYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 132 ------~-~~~~---------------~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
+ ..++ .....++.+.+.+++.+++++|++|||+|||++
T Consensus 164 ~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 223 (459)
T PLN02448 164 ESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQ 223 (459)
T ss_pred cccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHH
Confidence 0 0000 011224566677777888999999999999986
No 16
>PLN02207 UDP-glycosyltransferase
Probab=99.96 E-value=2.9e-28 Score=204.73 Aligned_cols=163 Identities=19% Similarity=0.351 Sum_probs=106.5
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEecccccc-cc----CCC-CCCCCceEEeccCCCCCCCCCCcc
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKG--LKITLAITNFIYK-TK----KPP-QPSDSVQIDTISDGYDDGGFSEAE 78 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g--~~VT~~~t~~~~~-~~----~~~-~~~~~i~f~~~~~~~p~~~~~~~~ 78 (171)
+++||++||||+|||+|||++|||+|++|| +.|||++|+.+.. .+ .+. ...+.|+|+.+|++.+....+...
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 458999999999999999999999999998 9999999998762 11 111 112369999999743210101123
Q ss_pred cHHHHHHHHHHHhH----HHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCC----------------------
Q 030831 79 SIDAYLQNMEVAGL----KTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPS---------------------- 130 (171)
Q Consensus 79 ~~~~~~~~~~~~~~----~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~---------------------- 130 (171)
+...++..+...+. +.+++++++...+++|++|||+|+|++|+.+||+ ++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 34434433333443 3455555543222346799999999999999999 1110
Q ss_pred ----C--------ccCCCC--------------ChHHHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 131 ----F--------IGVQGQ--------------YPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 131 ----~--------~~~~~~--------------~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
. +..++. .+..+..+.+..+..++++++|+|||+|||+.
T Consensus 162 ~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~ 226 (468)
T PLN02207 162 KDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDGYDAYVKLAILFTKANGILVNSSFDIEPY 226 (468)
T ss_pred cccccCcCCCCCeEECCCCCCCCChHHCcchhcCCccHHHHHHHHHhcccCCEEEEEchHHHhHH
Confidence 0 000100 00013455667777889999999999999975
No 17
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.96 E-value=1.9e-28 Score=207.12 Aligned_cols=157 Identities=26% Similarity=0.391 Sum_probs=106.6
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeccccccccC-------CCC--CCCCceEEeccCCCCCCCCCC
Q 030831 8 RAHVLIVPYPSQGHINPTFQFAKRLASKG--LKITLAITNFIYKTKK-------PPQ--PSDSVQIDTISDGYDDGGFSE 76 (171)
Q Consensus 8 ~~hvv~vp~p~~GHl~P~l~La~~L~~~g--~~VT~~~t~~~~~~~~-------~~~--~~~~i~f~~~~~~~p~~~~~~ 76 (171)
|.|||+||||+|||++|||+|||+|++|| ++|||++|+.+++++. +.. ..++|+|+.+|++.++ + +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~-~~ 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP-T-TE 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC-c-cc
Confidence 58999999999999999999999999998 9999999998865321 110 1235999999976542 1 11
Q ss_pred cccHHHHHHHHHHHhHHHHHHHHHHhhc-----CCCCccEEEeCCccccHHHHHh--hCCC-------------------
Q 030831 77 AESIDAYLQNMEVAGLKTLAELITKYKS-----SSNPIDCVVYDAFLYWALDVAK--DMPS------------------- 130 (171)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~~~~iI~D~~~~w~~~vA~--dlP~------------------- 130 (171)
..++..++.. +.+.+++.++++.. +++|++|||+|+|++|+.+||+ .+|.
T Consensus 80 ~~~~~~~~~~----~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~ 155 (481)
T PLN02554 80 DPTFQSYIDN----QKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQM 155 (481)
T ss_pred chHHHHHHHH----HHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhh
Confidence 1122222332 34455566655421 2245799999999999999999 1111
Q ss_pred -----------C------ccCCCC--------------ChHHHHHHHHHhhhcCCCCEEEEcchhhhcCCC
Q 030831 131 -----------F------IGVQGQ--------------YPAYFEMVLNQFSNADRADLVLVNTFYKLESQV 170 (171)
Q Consensus 131 -----------~------~~~~~~--------------~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~ 170 (171)
+ +..++. ....++.+.+..+.+++++||++|||+|||+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~ 226 (481)
T PLN02554 156 LYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQA 226 (481)
T ss_pred hccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 0 000000 012345667777888999999999999999853
No 18
>PLN00414 glycosyltransferase family protein
Probab=99.96 E-value=3.9e-28 Score=203.29 Aligned_cols=156 Identities=20% Similarity=0.270 Sum_probs=103.2
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCC-CCCCceEEecc----CCCCCCCCCCcccHH
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQ-PSDSVQIDTIS----DGYDDGGFSEAESID 81 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~-~~~~i~f~~~~----~~~p~~~~~~~~~~~ 81 (171)
+++|||+||||+|||+|||++|||+|+++|++|||++|+.+.+++.+.. ..+.|+|+.++ +|+|+ +.+...++.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~-g~e~~~~l~ 81 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPF-GAETASDLP 81 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCC-cccccccch
Confidence 4699999999999999999999999999999999999998877664331 12358886654 57776 323322332
Q ss_pred H----HHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCCCcc----------------------
Q 030831 82 A----YLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPSFIG---------------------- 133 (171)
Q Consensus 82 ~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~~~~---------------------- 133 (171)
. .+......+.+.++++++. .+++|||+|+ ++|+.+||+ ++|.+..
T Consensus 82 ~~~~~~~~~a~~~l~~~l~~~L~~-----~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~ 155 (446)
T PLN00414 82 NSTKKPIFDAMDLLRDQIEAKVRA-----LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPP 155 (446)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc-----CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCC
Confidence 1 1222222233445554432 2569999995 899999999 2332100
Q ss_pred --CCC-------C---ChH----HHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 134 --VQG-------Q---YPA----YFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 134 --~~~-------~---~~~----~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
.+. . .+. ..+.+.+..+...+++|||+|||+|||++
T Consensus 156 pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 207 (446)
T PLN00414 156 PDYPLSKVALRGHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGN 207 (446)
T ss_pred CCCCCCcCcCchhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHH
Confidence 000 0 001 11334455567788999999999999985
No 19
>PLN02208 glycosyltransferase family protein
Probab=99.96 E-value=6.7e-28 Score=201.65 Aligned_cols=156 Identities=19% Similarity=0.370 Sum_probs=103.3
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCC-CCCceEEec--c--CCCCCCCCCCcccHH
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQP-SDSVQIDTI--S--DGYDDGGFSEAESID 81 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~-~~~i~f~~~--~--~~~p~~~~~~~~~~~ 81 (171)
.++|||+||||+|||++||++|||+|++||++|||++|+.+.+++.+... .+.++|..+ | +|+|+ +.+...+..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~-g~~~~~~l~ 81 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPA-GAETTSDIP 81 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCC-Ccccccchh
Confidence 45999999999999999999999999999999999999988877644311 224777765 3 46665 333222332
Q ss_pred H----HHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCCCc-------------------c---
Q 030831 82 A----YLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPSFI-------------------G--- 133 (171)
Q Consensus 82 ~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~~~-------------------~--- 133 (171)
. ++........+.++++++++ +++|||+| +++|+.+||+ ++|++. .
T Consensus 82 ~~l~~~~~~~~~~~~~~l~~~L~~~-----~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~~~~~ 155 (442)
T PLN02208 82 ISMDNLLSEALDLTRDQVEAAVRAL-----RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIAHTHVPGGKLGVPP 155 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC-----CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHHHHccCccccCCCC
Confidence 2 22222233345566655442 57999999 5899999999 233210 0
Q ss_pred --CCC--------------CChHHHHHHHHHh-hhcCCCCEEEEcchhhhcCC
Q 030831 134 --VQG--------------QYPAYFEMVLNQF-SNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 134 --~~~--------------~~~~~~~~~~~~~-~~~~~a~gvlvNTf~eLE~~ 169 (171)
.+. ..+..++.+.+.. +..++++||++|||+|||++
T Consensus 156 pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~ 208 (442)
T PLN02208 156 PGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGK 208 (442)
T ss_pred CCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHH
Confidence 000 0012233444333 46778999999999999985
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.95 E-value=1.5e-27 Score=201.38 Aligned_cols=163 Identities=25% Similarity=0.382 Sum_probs=104.7
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCC---eEEEEecccccc-----ccCCC-CCCCCceEEeccCCCCCCCCCC-
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGL---KITLAITNFIYK-----TKKPP-QPSDSVQIDTISDGYDDGGFSE- 76 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~---~VT~~~t~~~~~-----~~~~~-~~~~~i~f~~~~~~~p~~~~~~- 76 (171)
+++||++||||+|||+||||+|||+|++||+ .||+++|..+.. .+.+. ...++|+|++||++..+.+.+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 3589999999999999999999999999994 567766654322 11111 0124699999997542111111
Q ss_pred cccHHHHHHHHHHHhHHHHHHHHHHhhc----CCC-CccEEEeCCccccHHHHHh--hCCCC------------------
Q 030831 77 AESIDAYLQNMEVAGLKTLAELITKYKS----SSN-PIDCVVYDAFLYWALDVAK--DMPSF------------------ 131 (171)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~-~~~~iI~D~~~~w~~~vA~--dlP~~------------------ 131 (171)
.......+..+...+.+++++.++++.. +++ |++|||+|+|++|+.+||+ ++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 1112123333444456677887777532 122 5799999999999999999 12210
Q ss_pred -----------------ccCCCC--------Ch------HHHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 132 -----------------IGVQGQ--------YP------AYFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 132 -----------------~~~~~~--------~~------~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
+..++. .+ ..++.+.+..++.++++|||+|||+|||++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPN 230 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHH
Confidence 000000 00 124556677788899999999999999985
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.94 E-value=3.1e-26 Score=193.82 Aligned_cols=160 Identities=25% Similarity=0.411 Sum_probs=103.7
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCC-----CCC----CceEEecc---CCCCCCCC
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQ-----PSD----SVQIDTIS---DGYDDGGF 74 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~-----~~~----~i~f~~~~---~~~p~~~~ 74 (171)
++.||+++|||+|||+||+++|||+|++||++|||++|+.+.+++++.. ..+ .+.+.++| +++|+ +.
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~-g~ 82 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE-GC 82 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC-Cc
Confidence 5689999999999999999999999999999999999998876553220 011 34445566 46765 32
Q ss_pred CCcc--------cHHHHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCCCcc-----------
Q 030831 75 SEAE--------SIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPSFIG----------- 133 (171)
Q Consensus 75 ~~~~--------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~~~~----------- 133 (171)
+... +...++..+... .+.+.+.++++..+ .+++|||+|++++|+.+||+ ++|.+..
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~-~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~ 160 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFS-TKYFKDQLEKLLET-TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCAS 160 (482)
T ss_pred ccccccccccccchHHHHHHHHHH-HHHHHHHHHHHHhc-CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHH
Confidence 2211 122333333322 22344444443322 35799999999999999999 2332100
Q ss_pred --------------------CC----------------CCChHHHHHHHHHhhhcCCCCEEEEcchhhhcCC
Q 030831 134 --------------------VQ----------------GQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 169 (171)
Q Consensus 134 --------------------~~----------------~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 169 (171)
.+ +....+.+++....+..+++++|++|||+|||+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~ 232 (482)
T PLN03007 161 YCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESA 232 (482)
T ss_pred HHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHH
Confidence 00 0011234444555567888999999999999975
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.42 E-value=4.7e-13 Score=110.53 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=78.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEeccCCCCCC--CCCC--------cc
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDG--GFSE--------AE 78 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~~~p~~--~~~~--------~~ 78 (171)
.||+++++|++||++|++.||+.|.++||+|||++++.....+... +++|..+++..+.. .... ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA----GLEFVPVGGDPDELLASPERNAGLLLLGPG 76 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc----CCceeeCCCCHHHHHhhhhhcccccccchH
Confidence 3899999999999999999999999999999999999776655433 57888887533210 0000 00
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCC
Q 030831 79 SIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPS 130 (171)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~ 130 (171)
........+.......++++++.+. ..++||||+|.+..|+..+|+ ++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pDlvi~d~~~~~~~~~A~~~giP~ 128 (401)
T cd03784 77 LLLGALRLLRREAEAMLDDLVAAAR--DWGPDLVVADPLAFAGAVAAEALGIPA 128 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCEEEeCcHHHHHHHHHHHhCCCe
Confidence 1111222233333344445454432 246899999999999988888 6664
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.39 E-value=1.9e-12 Score=106.96 Aligned_cols=111 Identities=22% Similarity=0.319 Sum_probs=75.7
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEeccCCCCCC-CCCC--cccHHHHHHHHHHH
Q 030831 14 VPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDG-GFSE--AESIDAYLQNMEVA 90 (171)
Q Consensus 14 vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~~~p~~-~~~~--~~~~~~~~~~~~~~ 90 (171)
+.+|++||++|++.||++|.++||+|||++++.+.+.+.+. +++|+.+++.++.. ..+. ..+....+..+...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA----GAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDE 76 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc----CCEEEecCCcCccccccccccCcchHHHHHHHHHH
Confidence 46899999999999999999999999999999988777654 58888887543321 1111 01222233333333
Q ss_pred hHHHHHHHHHHhhcCCCCccEEEeCCccccHHHHHh--hCCC
Q 030831 91 GLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAK--DMPS 130 (171)
Q Consensus 91 ~~~~~~~~l~~l~~~~~~~~~iI~D~~~~w~~~vA~--dlP~ 130 (171)
....+.++.+.+.. .++||||+|.++.|+..+|+ ++|.
T Consensus 77 ~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~ 116 (392)
T TIGR01426 77 AEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPV 116 (392)
T ss_pred HHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCE
Confidence 33344444433332 35799999999999999998 6664
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.25 E-value=1.7e-11 Score=103.98 Aligned_cols=118 Identities=30% Similarity=0.454 Sum_probs=73.2
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCC--------CCceEEeccCCCCCCCCCCc-c
Q 030831 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPS--------DSVQIDTISDGYDDGGFSEA-E 78 (171)
Q Consensus 8 ~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~--------~~i~f~~~~~~~p~~~~~~~-~ 78 (171)
+.|++++|+|++||++|+++||++|+++|++||++++..+.......... ...++...++++++ +.... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPE-GWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhcc-chHHHHH
Confidence 68999999999999999999999999999999999998876553221001 11222222233433 11111 0
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCccEEEeCCccccHHHHHh
Q 030831 79 SIDAYLQNMEVAGLKTLAELITKYKS-SSNPIDCVVYDAFLYWALDVAK 126 (171)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~iI~D~~~~w~~~vA~ 126 (171)
+.......+.......+++.+..+.. ....++|+|+|.|+.|...+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~ 132 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAI 132 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcc
Confidence 11111233333334455554444321 2233899999999999998886
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=98.59 E-value=3.3e-08 Score=69.97 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=45.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEeccC
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISD 67 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~ 67 (171)
|++...+..||++|++.||+.|.++||+|++.+.+...+.+... +++|+.++.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~----Gl~~~~~~~ 53 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA----GLEFVPIPG 53 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT----T-EEEESSS
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc----CceEEEecC
Confidence 68899999999999999999999999999999999888777443 689999864
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.82 E-value=1.7e-05 Score=66.30 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=47.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEecc
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~ 66 (171)
.+|+++..|..||++|++.||+.|.++|+.|+|++++...+.+.+. ++.|..++
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a----g~~f~~~~ 55 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA----GLAFVAYP 55 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh----Ccceeecc
Confidence 5789999999999999999999999999999999999998887655 36677665
No 27
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.73 E-value=6e-05 Score=64.22 Aligned_cols=59 Identities=22% Similarity=0.383 Sum_probs=30.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEeccCCCCC
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDD 71 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~~~p~ 71 (171)
+|+++|+ +.+|.++|..+++.|++|||+||++++.... .+... ....++++.++++.+.
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 60 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS-KPSNIRFETYPDPYPE 60 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-------S-CCEEEE-----T
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc-cccceeeEEEcCCcch
Confidence 6888885 7899999999999999999999999875432 22211 1235788888765543
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.41 E-value=0.0024 Score=51.01 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=31.1
Q ss_pred eEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 030831 10 HVLIVPY-PSQGHINPTFQFAKRLASKGLKITLAITNFIYKTK 51 (171)
Q Consensus 10 hvv~vp~-p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~ 51 (171)
||++... -|.||+.-.+.||+.| +|++|+|++.....+.+
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~ 42 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFL 42 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHh
Confidence 4444444 4999999999999999 69999999977554333
No 29
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.41 E-value=0.0012 Score=53.30 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=29.9
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 12 LIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 12 v~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
+.+.-.|.||+.|.+.+++.|.+ |++|+++++..
T Consensus 4 ~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 4 YSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred EEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 34667889999999999999999 99999998766
No 30
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=96.45 E-value=0.1 Score=42.88 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=38.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccc-cCCCCCCCCceEEecc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKT-KKPPQPSDSVQIDTIS 66 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~-~~~~~~~~~i~f~~~~ 66 (171)
+|++..--.-||+.|.+.+|+.|..+|++|+|+.+..-.+. +.+ ..++.+..++
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~---~~g~~~~~~~ 57 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIE---KENIPYYSIS 57 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCc---ccCCcEEEEe
Confidence 35555555569999999999999999999999997654432 111 1147777775
No 31
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.21 E-value=0.0078 Score=51.87 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=33.1
Q ss_pred ceEEEE-cCCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 9 AHVLIV-PYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 9 ~hvv~v-p~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
.+|+++ |.++.+|.+-+-.+++.|++|||+||++++.
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 457755 8899999999999999999999999999764
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=95.96 E-value=0.19 Score=41.58 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=65.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEeccccccccCCCCCCCCceEEeccCCCCCCCCCCcccHHHHHHHHHH
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGL-KITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEV 89 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~-~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~~~p~~~~~~~~~~~~~~~~~~~ 89 (171)
|++.-.-.-||+.|.+.|++.|.++|+ +|.++.+....+..... ...+.|..++-+-.. ...........+..+..
T Consensus 3 ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~--~~~~~~~~I~~~~~~-~~~~~~~~~~~~~~~~~ 79 (357)
T COG0707 3 IVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK--QYGIEFELIPSGGLR-RKGSLKLLKAPFKLLKG 79 (357)
T ss_pred EEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc--ccCceEEEEeccccc-ccCcHHHHHHHHHHHHH
Confidence 455555566999999999999999999 57777665554332221 125778877642211 11111112222333322
Q ss_pred HhHHHHHHHHHHhhcCCCCccEEEeCCcc-ccHHHHHh---hCCCCccCCC
Q 030831 90 AGLKTLAELITKYKSSSNPIDCVVYDAFL-YWALDVAK---DMPSFIGVQG 136 (171)
Q Consensus 90 ~~~~~~~~~l~~l~~~~~~~~~iI~D~~~-~w~~~vA~---dlP~~~~~~~ 136 (171)
. ...++++++. +|++||.-.-. .-..-+|+ .+|.+++..+
T Consensus 80 ~--~~a~~il~~~-----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn 123 (357)
T COG0707 80 V--LQARKILKKL-----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN 123 (357)
T ss_pred H--HHHHHHHHHc-----CCCEEEecCCccccHHHHHHHhCCCCEEEEecC
Confidence 1 2345666654 57899985433 44455555 6777666544
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.56 E-value=0.79 Score=36.78 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=36.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEecc
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~ 66 (171)
|++..--..||+...+.||+.|.++|++|++++....... ... ...++++..++
T Consensus 2 ~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~-~~~~~~~~~~~ 55 (350)
T cd03785 2 ILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLV-PKAGIPLHTIP 55 (350)
T ss_pred EEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcc-cccCCceEEEE
Confidence 4445555569999999999999999999999987543211 100 11246676665
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.47 E-value=0.4 Score=39.48 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=45.0
Q ss_pred CceEEEEcC--CCCCChHHHHHHHHHHHhC--CCeEEEEeccccccccCCCCCCCCceEEeccC
Q 030831 8 RAHVLIVPY--PSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKKPPQPSDSVQIDTISD 67 (171)
Q Consensus 8 ~~hvv~vp~--p~~GHl~P~l~La~~L~~~--g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~ 67 (171)
.++|+|..- .|.||+-=++..|+.|+.. |++|++++.........- ..+++++.+|.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~---~~gVd~V~LPs 69 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG---PAGVDFVKLPS 69 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC---cccCceEecCc
Confidence 458888875 6889999999999999986 999999997655543321 24699999984
No 35
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=94.05 E-value=1.5 Score=36.12 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEeccCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHhhc
Q 030831 25 TFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVAGLKTLAELITKYKS 104 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 104 (171)
+-+||+.|+++|++|++++........ . +++.+.++.+... ..........+...... .. .+.+.+..+..
T Consensus 13 ~~~la~~L~~~G~~v~~~~~~~~~~~~-----~-~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ 83 (396)
T cd03818 13 FRHLAPALAAQGHEVVFLTEPNAAPPP-----G-GVRVVRYRPPRGP-TSGTHPYLREFEEAVLR-GQ-AVARALLALRA 83 (396)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCCCC-----C-CeeEEEecCCCCC-CCCCCccchhHHHHHHH-HH-HHHHHHHHHHh
Confidence 678999999999999999876554211 1 4777777532111 00000111111111111 11 12222333323
Q ss_pred CCCCccEEEeCCccccHHHHHh
Q 030831 105 SSNPIDCVVYDAFLYWALDVAK 126 (171)
Q Consensus 105 ~~~~~~~iI~D~~~~w~~~vA~ 126 (171)
++-+||.|++-.-.+++.-+.+
T Consensus 84 ~~~~pdvi~~h~~~~~~~~l~~ 105 (396)
T cd03818 84 KGFRPDVIVAHPGWGETLFLKD 105 (396)
T ss_pred cCCCCCEEEECCccchhhhHHH
Confidence 3446799988865555554444
No 36
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=94.05 E-value=1.3 Score=35.81 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=32.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
+|+++.-..-||..-+++||+.|.++|++|++++.+.
T Consensus 3 ~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 3 KILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred EEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 5777776666999999999999999999999998755
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=93.83 E-value=0.27 Score=38.97 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=27.9
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEecccc
Q 030831 17 PSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 17 p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
-|.||+.=++.||+.|.++|+.|+|++....
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~ 42 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLP 42 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4789999999999999999999999997643
No 38
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=93.69 E-value=1.2 Score=35.76 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=32.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
+|+++.--..||+...++||+.|.++|++|++++.+.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCC
Confidence 5788888888999977899999999999999997643
No 39
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=88.80 E-value=19 Score=33.08 Aligned_cols=153 Identities=11% Similarity=0.144 Sum_probs=75.9
Q ss_pred ceEEEEcCCC-------------CCChHHHHHHHHH--------HHhCCC----eEEEEecccccc-------ccCCCCC
Q 030831 9 AHVLIVPYPS-------------QGHINPTFQFAKR--------LASKGL----KITLAITNFIYK-------TKKPPQP 56 (171)
Q Consensus 9 ~hvv~vp~p~-------------~GHl~P~l~La~~--------L~~~g~----~VT~~~t~~~~~-------~~~~~~~ 56 (171)
.+|++++.=+ -|+..=.++||+. |+++|+ +|+++|-..... .++....
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~ 335 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYG 335 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccccC
Confidence 4677766544 4667777888886 568899 777888543221 1112212
Q ss_pred CCCceEEeccCCCCCC-CCC---CcccHHHHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCccc-cHHHHHh---hC
Q 030831 57 SDSVQIDTISDGYDDG-GFS---EAESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLY-WALDVAK---DM 128 (171)
Q Consensus 57 ~~~i~f~~~~~~~p~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~~-w~~~vA~---dl 128 (171)
.++++++.+|-|.+.. .+. +..++-.++..+... ..+.+.+.. +.+||.|++-...+ ++...++ ++
T Consensus 336 ~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~---~~~~~~~~~---~~~pDlIHahy~d~glva~lla~~lgV 409 (784)
T TIGR02470 336 TEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAED---AEKEILAEL---QGKPDLIIGNYSDGNLVASLLARKLGV 409 (784)
T ss_pred CCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHH---HHHHHHHhc---CCCCCEEEECCCchHHHHHHHHHhcCC
Confidence 3567888887543221 011 112222333333322 222232222 23679998865332 3333333 56
Q ss_pred CCCc--cCCC------------CChHHHHHHH---HHhhhcCCCCEEEEcchhhhc
Q 030831 129 PSFI--GVQG------------QYPAYFEMVL---NQFSNADRADLVLVNTFYKLE 167 (171)
Q Consensus 129 P~~~--~~~~------------~~~~~~~~~~---~~~~~~~~a~gvlvNTf~eLE 167 (171)
|-.. +..+ ..+..+.+.. .....+..||.|+.+|.+|.+
T Consensus 410 P~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~ 465 (784)
T TIGR02470 410 TQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIA 465 (784)
T ss_pred CEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhh
Confidence 6221 0000 0111222221 133567789999999998754
No 40
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.28 E-value=0.55 Score=37.58 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=29.7
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEecccccc
Q 030831 17 PSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (171)
Q Consensus 17 p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~ 49 (171)
-|.||+.=++.||+.|.++|+.++|++.+.+..
T Consensus 13 iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 13 IGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred cCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 578999999999999999999999999877544
No 41
>PLN00142 sucrose synthase
Probab=87.83 E-value=7.4 Score=35.78 Aligned_cols=19 Identities=16% Similarity=0.489 Sum_probs=15.1
Q ss_pred hhhcCCCCEEEEcchhhhc
Q 030831 149 FSNADRADLVLVNTFYKLE 167 (171)
Q Consensus 149 ~~~~~~a~gvlvNTf~eLE 167 (171)
...+..|+.|+.+|.+|.+
T Consensus 470 ~~a~~~Ad~IIasT~qEi~ 488 (815)
T PLN00142 470 LIAMNHADFIITSTYQEIA 488 (815)
T ss_pred HHHHHhhhHHHhCcHHHHh
Confidence 3456788999999998875
No 42
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=86.80 E-value=0.93 Score=31.35 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEecc
Q 030831 25 TFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~ 66 (171)
+.+|++.|+++|++||+++........... ..++++..+|
T Consensus 7 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~--~~~~~~~~~~ 46 (160)
T PF13579_consen 7 VRELARALAARGHEVTVVTPQPDPEDDEEE--EDGVRVHRLP 46 (160)
T ss_dssp HHHHHHHHHHTT-EEEEEEE---GGG-SEE--ETTEEEEEE-
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCcccccc--cCCceEEecc
Confidence 578999999999999999965444322111 2357777775
No 43
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=85.48 E-value=34 Score=32.54 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=32.0
Q ss_pred cCCCceEEEEcCCCC---------------CChHHHHHHHHHHHhCC--CeEEEEecccc
Q 030831 5 KIHRAHVLIVPYPSQ---------------GHINPTFQFAKRLASKG--LKITLAITNFI 47 (171)
Q Consensus 5 ~~~~~hvv~vp~p~~---------------GHl~P~l~La~~L~~~g--~~VT~~~t~~~ 47 (171)
++++.+|++|..-|- |+..=.++||+.|+++| ++|.++|-...
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~ 225 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVS 225 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcC
Confidence 346778888875332 35666799999999997 79999996443
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=83.98 E-value=2.1 Score=33.67 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=26.3
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEecccc
Q 030831 19 QGHINPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
-|+-+.+.+|++.|+++|++|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 69999999999999999999999997654
No 45
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=81.33 E-value=3.3 Score=34.60 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=37.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEecc
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~ 66 (171)
.+|.++.....|+-.=+..+|+.|+++|++||+++....... .......+++++.++
T Consensus 4 ~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-~~~~~~~~v~~~~~~ 60 (415)
T cd03816 4 KRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-DEILSNPNITIHPLP 60 (415)
T ss_pred cEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-HHHhcCCCEEEEECC
Confidence 455666666677767778999999999999999986532211 010012357777764
No 46
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=80.84 E-value=3.2 Score=32.60 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=28.5
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 15 PYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 15 p~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
|....|+-.-..++++.|.++|++|+++++....
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPG 43 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 4456799999999999999999999999875543
No 47
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=80.61 E-value=2.2 Score=29.95 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 20 GHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 20 GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
|=-.-+++|++.|+++|++||+++.....
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 44567899999999999999999765444
No 48
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=80.30 E-value=3.5 Score=28.01 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=32.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
+|++.+.++-.|-....-++..|..+|++|.++...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 478899999999999999999999999999887643
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=79.63 E-value=27 Score=27.18 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 19 QGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
-|+-.-..+|++.|.++|++|+++++....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 478888999999999999999999976554
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=79.50 E-value=2.9 Score=32.52 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=37.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEecc
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~ 66 (171)
|+++.....|+..-+.+|++.|.++|++|+++++......... ..+++...++
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~---~~~~~~~~~~ 54 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE---ALGVKVIPIP 54 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc---cCCceEEecc
Confidence 5666666778889999999999999999999997655432111 2246666554
No 51
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=78.52 E-value=3.2 Score=33.27 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=29.1
Q ss_pred eEEEEcCCC-CCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 10 HVLIVPYPS-QGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 10 hvv~vp~p~-~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
+|+++.+|. -|.-.-..+||+.|.++|++|+++++..
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 455555643 4777888999999999999999998753
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=78.35 E-value=3.8 Score=33.09 Aligned_cols=48 Identities=13% Similarity=0.125 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEecc
Q 030831 19 QGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~ 66 (171)
-|+-..+.+||+.|+++|++|+++++..............++.+..++
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVP 68 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecc
Confidence 367789999999999999999999865443221101012356666654
No 53
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=78.07 E-value=8.6 Score=29.38 Aligned_cols=42 Identities=7% Similarity=-0.001 Sum_probs=36.4
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
.+.+|++...++-.|-....=++-.|..+|++|+++...-..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~ 128 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPI 128 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 467999999999999999999999999999999998864433
No 54
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=78.02 E-value=5.9 Score=28.08 Aligned_cols=43 Identities=9% Similarity=0.041 Sum_probs=37.1
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecccccc
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~ 49 (171)
++++|++...++-+|-.-..-++..|.++|++|+++-..-..+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e 44 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQE 44 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 3578999999999999999999999999999999988654433
No 55
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=76.12 E-value=4.7 Score=31.70 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=26.5
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 19 QGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
.|+-.-+..+++.|+++|++|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 599999999999999999999999875443
No 56
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=74.43 E-value=5.9 Score=32.36 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=29.9
Q ss_pred CceEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEec
Q 030831 8 RAHVLIVPYP-SQGHINPTFQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 8 ~~hvv~vp~p-~~GHl~P~l~La~~L~~~g~~VT~~~t 44 (171)
..+|+++..- |.||..+...|++.|.++|+.|.++..
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d 41 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCD 41 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3477777764 569999999999999999988666654
No 57
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=72.70 E-value=4.8 Score=33.38 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
++|++..--..||+.|. .|++.|.++|.+|+|+...
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~g 41 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVA 41 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEc
Confidence 67887777788999999 9999999999999998865
No 58
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=72.29 E-value=5.7 Score=27.23 Aligned_cols=50 Identities=12% Similarity=0.319 Sum_probs=33.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEecc
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~ 66 (171)
|+++.--..+| ..++++.|..+|++|++++.......... ..++.+..++
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~---~~~i~~~~~~ 51 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI---IEGIKVIRLP 51 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH---hCCeEEEEec
Confidence 55666555566 46889999999999999998444322111 2357777764
No 59
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.45 E-value=14 Score=30.79 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=46.8
Q ss_pred cccCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc--cccCCCCCCCCceEEeccC
Q 030831 3 EKKIHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY--KTKKPPQPSDSVQIDTISD 67 (171)
Q Consensus 3 ~~~~~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~--~~~~~~~~~~~i~f~~~~~ 67 (171)
+....+.|+++|-.--.||--=|--=|.-|+..|++|+++.--... ..+. .+++|+++.+|.
T Consensus 7 ~~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~---~hprI~ih~m~~ 70 (444)
T KOG2941|consen 7 ENKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL---NHPRIRIHGMPN 70 (444)
T ss_pred ccccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh---cCCceEEEeCCC
Confidence 3445677888888888999988888999999999999998743221 1111 267899999874
No 60
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=71.42 E-value=7.9 Score=30.30 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 18 SQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 18 ~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
.-|+..-..+|++.|.++|++|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 4599999999999999999999999875443
No 61
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=70.71 E-value=14 Score=29.32 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEecc
Q 030831 23 NPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (171)
Q Consensus 23 ~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~ 66 (171)
.=..+||+.|.++|++|++++........... ..++++..++
T Consensus 19 ~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~--~~~i~~~~~~ 60 (363)
T cd04955 19 TFVEELAPRLVARGHEVTVYCRSPYPKQKETE--YNGVRLIHIP 60 (363)
T ss_pred HHHHHHHHHHHhcCCCEEEEEccCCCCCcccc--cCCceEEEcC
Confidence 55678999999999999999975443221111 2357777765
No 62
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=70.10 E-value=11 Score=30.75 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=32.6
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEecc
Q 030831 18 SQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (171)
Q Consensus 18 ~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~ 66 (171)
.-|--.=..+||+.|.++|++||++++......-.......++++..++
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~ 67 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVV 67 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEec
Confidence 3466677899999999999999999976432211111012357777664
No 63
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=70.04 E-value=6.2 Score=31.22 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 19 QGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
-|+-..+.+|++.|.++|++|++++..
T Consensus 12 gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 12 GGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 588899999999999999999999853
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=68.21 E-value=9.6 Score=30.89 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEecc
Q 030831 23 NPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 23 ~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
.=+++||+.|+++|++||++++.
T Consensus 17 ~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 17 RLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCC
Confidence 44589999999999999999874
No 65
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=66.36 E-value=14 Score=27.72 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=34.6
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 8 ~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
+.+|++.+.++-.|-....=++..|..+|++|+++...-
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~ 120 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDV 120 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCC
Confidence 578999999999999999999999999999999877543
No 66
>PRK10307 putative glycosyl transferase; Provisional
Probab=65.35 E-value=14 Score=30.52 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCeEEEEeccc
Q 030831 25 TFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~~ 46 (171)
+.+|++.|.++|++|+++++..
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 4799999999999999999763
No 67
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=64.98 E-value=82 Score=26.33 Aligned_cols=26 Identities=4% Similarity=0.008 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhC--CCeEEEEeccccc
Q 030831 23 NPTFQFAKRLASK--GLKITLAITNFIY 48 (171)
Q Consensus 23 ~P~l~La~~L~~~--g~~VT~~~t~~~~ 48 (171)
-=+++.++.|.++ |+.|+++|+...+
T Consensus 18 rvl~~a~~~l~~~~~~~~v~i~t~~~~~ 45 (419)
T cd03806 18 RVLWCAVRALQKRYPNNIVVIYTGDLDA 45 (419)
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 3457788888887 7999999987655
No 68
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=64.70 E-value=16 Score=27.46 Aligned_cols=42 Identities=10% Similarity=-0.087 Sum_probs=36.5
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
.+++|++.+.++-.|-....=++..|-.+|++|+++...-..
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~ 124 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPI 124 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCH
Confidence 457999999999999999999999999999999998765443
No 69
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=64.40 E-value=13 Score=26.95 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=24.4
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEe
Q 030831 18 SQGHINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 18 ~~GHl~P~l~La~~L~~~g~~VT~~~ 43 (171)
.-|+-.....|++.|.++|++|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 66999999999999999999999988
No 70
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=64.32 E-value=14 Score=27.63 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEecc
Q 030831 26 FQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (171)
Q Consensus 26 l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~ 66 (171)
=+|+.+|+++|++||+.+.......-... ..+++.+.+|
T Consensus 24 e~L~~~l~~~g~~v~Vyc~~~~~~~~~~~--y~gv~l~~i~ 62 (185)
T PF09314_consen 24 EELAPRLVSKGIDVTVYCRSDYYPYKEFE--YNGVRLVYIP 62 (185)
T ss_pred HHHHHHHhcCCceEEEEEccCCCCCCCcc--cCCeEEEEeC
Confidence 45899999999999999876554322222 3468888876
No 71
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=62.94 E-value=21 Score=23.85 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=32.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
++++...+...|-.-+.-+|..|.++|++|.++....
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 6889999999999999999999999999999885443
No 72
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=62.01 E-value=18 Score=27.78 Aligned_cols=30 Identities=23% Similarity=0.154 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 19 QGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
-|.-.-+++|++.|.++|++|++++.....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 455577889999999999999999976554
No 73
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=61.79 E-value=18 Score=30.64 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=29.2
Q ss_pred CCceEEEEc----CCCC-CChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 7 HRAHVLIVP----YPSQ-GHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 7 ~~~hvv~vp----~p~~-GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
++.+|+++- ++.. |=-+=+.+|++.|.++|++|+++++..
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 456888773 2222 333567899999999999999999754
No 74
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=60.46 E-value=17 Score=28.50 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 20 GHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 20 GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
|--.-+.+|++.|.++|++|++++...
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 444668999999999999999999654
No 75
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.46 E-value=18 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=26.2
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 18 SQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 18 ~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
.-|.-.-+.+|++.|..+|++|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 4578888899999999999999999976543
No 76
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=58.02 E-value=7.9 Score=27.57 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.8
Q ss_pred CCCCChHHHHHHHHHHHh
Q 030831 17 PSQGHINPTFQFAKRLAS 34 (171)
Q Consensus 17 p~~GHl~P~l~La~~L~~ 34 (171)
|-+|-.||+|+|+-+|+=
T Consensus 57 pe~G~tNPFLHlsmHLsI 74 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSI 74 (137)
T ss_pred cccCccchhHHHHHHHHH
Confidence 678999999999999863
No 77
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=56.58 E-value=24 Score=27.15 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 17 PSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 17 p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
+.-|+-.-+.+|++.|.+.|++|++++.....
T Consensus 10 ~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 10 GGGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred cCCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 35688889999999999999999999976544
No 78
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=56.23 E-value=26 Score=23.98 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=32.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
+|++...++-.|-.-..=++..|..+|++|.++....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5889999999999999989999999999999988643
No 79
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=53.90 E-value=41 Score=25.49 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=33.7
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
+..-|+||-.|.+---.=++.|||+|...|+.|-++....
T Consensus 107 ~qriVaFvgSpi~esedeLirlak~lkknnVAidii~fGE 146 (243)
T COG5148 107 RQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFGE 146 (243)
T ss_pred ceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehhh
Confidence 3446889999999888999999999999998888877643
No 80
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=52.90 E-value=27 Score=27.58 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=30.1
Q ss_pred eEEEEcCC-C-CCChHHHHHHHHHHHhCCCeEEEEecccc
Q 030831 10 HVLIVPYP-S-QGHINPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 10 hvv~vp~p-~-~GHl~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
+|+++... + -|+-.=...+++.|.++|+.|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 45555543 3 58889999999999999999999997653
No 81
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=51.37 E-value=24 Score=21.87 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCeEEEEecc
Q 030831 25 TFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~ 45 (171)
-+++|..|+..|.+||++...
T Consensus 11 g~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHhCcEEEEEecc
Confidence 489999999999999998853
No 82
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.47 E-value=18 Score=25.60 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 030831 20 GHINPTFQFAKRLASKGLKITLAITNFIYKTK 51 (171)
Q Consensus 20 GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~ 51 (171)
--+...+-++.+|-.+|++||+..++...+.+
T Consensus 16 ~qissaiYls~klkkkgf~v~VaateAa~kLl 47 (148)
T COG4081 16 PQISSAIYLSHKLKKKGFDVTVAATEAALKLL 47 (148)
T ss_pred ccchHHHHHHHHhhccCccEEEecCHhhheee
Confidence 34566789999999999999999987655443
No 83
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=49.44 E-value=35 Score=23.50 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=28.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTK 51 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~ 51 (171)
|++.-..+ ++..=..++.++|.++|++|+++.|+...+-+
T Consensus 3 i~l~vtGs-~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 3 ILLGVTGS-IAAYKAPDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEEE-SS-GGGGGHHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEEECH-HHHHHHHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 44443333 44444899999999999999999998765543
No 84
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=49.42 E-value=23 Score=28.72 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=26.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEec
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t 44 (171)
+|++..---.||+.|.+ +++.|.+++..+.++..
T Consensus 3 ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~ 36 (380)
T PRK00025 3 RIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGV 36 (380)
T ss_pred eEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEE
Confidence 57777777779999999 99999987766666653
No 85
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=48.80 E-value=21 Score=26.62 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=21.9
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 13 IVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 13 ~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
++.-+..|.+- ..||+.+..+|+.||++..+.
T Consensus 22 ~ItN~SSG~~G--~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 22 FITNRSSGKMG--AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EEEES--SHHH--HHHHHHHHHTT-EEEEEE-TT
T ss_pred EecCCCcCHHH--HHHHHHHHHCCCEEEEEecCc
Confidence 34455566665 678999999999999999874
No 86
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=48.27 E-value=92 Score=25.81 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=23.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCC--CeEEE
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKG--LKITL 41 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g--~~VT~ 41 (171)
++-+=...-|.++-...|+++|.+++ ++|.+
T Consensus 52 ~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~ 84 (425)
T PRK05749 52 LIWFHAVSVGETRAAIPLIRALRKRYPDLPILV 84 (425)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 45556667799999999999998865 44443
No 87
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=47.91 E-value=42 Score=21.16 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=26.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLA 42 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~ 42 (171)
-+|++.-....|..=.-+||+.|+++|+.|...
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 455666666799999999999999999887643
No 88
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=47.23 E-value=1.2e+02 Score=22.53 Aligned_cols=61 Identities=21% Similarity=0.384 Sum_probs=26.4
Q ss_pred CceEEeccCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHh-h-cCCCCccEEEeCCccccHHHHHh
Q 030831 59 SVQIDTISDGYDDGGFSEAESIDAYLQNMEVAGLKTLAELITKY-K-SSSNPIDCVVYDAFLYWALDVAK 126 (171)
Q Consensus 59 ~i~f~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~-~~~~~~~~iI~D~~~~w~~~vA~ 126 (171)
.|-+.++.||-.- .+.+.++.....+...+.+++++- . ..+.++.|||.|....-..+.++
T Consensus 5 kIGIrp~iDGR~~-------gVresLe~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~ 67 (171)
T PF07881_consen 5 KIGIRPTIDGRRG-------GVRESLEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAA 67 (171)
T ss_dssp EEEEEEB----TT-------THHHHHHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHH
T ss_pred eEEEEEeecCCch-------hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHH
Confidence 4555666554321 233333333333444556666553 2 23467899999988765555544
No 89
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=47.01 E-value=33 Score=26.35 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=26.5
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 19 QGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
-|+-.-+..|++.|.+.|++|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 689999999999999999999999976544
No 90
>PTZ00445 p36-lilke protein; Provisional
Probab=46.89 E-value=26 Score=27.02 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCChHH-HHHHHHHHHhCCCeEEEEeccc
Q 030831 19 QGHINP-TFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 19 ~GHl~P-~l~La~~L~~~g~~VT~~~t~~ 46 (171)
-+|+.| +..+.++|.+.|++|+++|-..
T Consensus 73 ~~~~tpefk~~~~~l~~~~I~v~VVTfSd 101 (219)
T PTZ00445 73 LTSVTPDFKILGKRLKNSNIKISVVTFSD 101 (219)
T ss_pred hccCCHHHHHHHHHHHHCCCeEEEEEccc
Confidence 367777 8889999999999999999643
No 91
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=45.70 E-value=31 Score=20.83 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=7.5
Q ss_pred CceEEeccC
Q 030831 59 SVQIDTISD 67 (171)
Q Consensus 59 ~i~f~~~~~ 67 (171)
+|||+++|.
T Consensus 23 GIRFVpiPv 31 (61)
T PF07131_consen 23 GIRFVPIPV 31 (61)
T ss_pred Cceeecccc
Confidence 599999984
No 92
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=45.36 E-value=85 Score=23.49 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=26.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
-|+|+-.++.-|--=+.+.+++|...|++|.++.-.
T Consensus 110 ivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G 145 (187)
T cd01452 110 IVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFG 145 (187)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 377777777777655668888888888887777743
No 93
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=44.84 E-value=31 Score=20.97 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 030831 26 FQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 26 l~La~~L~~~g~~VT~~~t~ 45 (171)
|..|..|+++|++||++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56788899999999988643
No 94
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=43.83 E-value=26 Score=28.79 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 20 GHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 20 GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
|--.=..+||+.|+++|++|+++++..
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~ 41 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAY 41 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccC
Confidence 445678999999999999999999753
No 95
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=43.69 E-value=24 Score=27.23 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 20 GHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 20 GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
-|+..|=++|..|.++|++|+++....
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 367889999999999999999999874
No 96
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=43.57 E-value=33 Score=22.79 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEecc
Q 030831 23 NPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 23 ~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
.|.+++++.|..+|..|.+.=+-
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CHHHHHHHHHHHCCCEEEEECCc
Confidence 68999999999999998886653
No 97
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=42.97 E-value=24 Score=23.95 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=22.9
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEec
Q 030831 14 VPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 14 vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t 44 (171)
.-+||+|+++=-.+|++++.+.|+ +|+.+
T Consensus 77 ~i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 77 AIHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp EEESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred ccccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 347999999999999999998775 45544
No 98
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=42.87 E-value=51 Score=20.80 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=25.9
Q ss_pred eEEEEcCCCC--CChHHHHHHHHHHHhCCCeEEEEe
Q 030831 10 HVLIVPYPSQ--GHINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 10 hvv~vp~p~~--GHl~P~l~La~~L~~~g~~VT~~~ 43 (171)
+|+++|.... .+..-.++++..|...|++|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 6888887653 456667888899888899988744
No 99
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=42.40 E-value=57 Score=23.43 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=33.6
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 030831 6 IHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 6 ~~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~ 43 (171)
+++++|++.+.-.-||=.=.=-+++.|++.|+.|....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g 47 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLG 47 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecC
Confidence 36899999999988999999999999999999998754
No 100
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.35 E-value=31 Score=29.14 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 19 QGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
.||+.|++.|. +|...||+|+++....
T Consensus 48 lGhlv~l~kL~-~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 48 LGHLVPLMKLR-RFQDAGHKPIVLIGDA 74 (401)
T ss_pred hhhHHHHHHHH-HHHHCCCeEEEEeccc
Confidence 39999999985 5678899999988643
No 101
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=40.90 E-value=40 Score=26.39 Aligned_cols=44 Identities=11% Similarity=0.263 Sum_probs=33.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccccccC
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKK 52 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~~ 52 (171)
.-++++=.||-|=..=...+|..|..+|++|+|++++...+.+.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 35777777777655555888999998899999999987766553
No 102
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=40.87 E-value=4.1 Score=21.79 Aligned_cols=17 Identities=29% Similarity=0.714 Sum_probs=12.6
Q ss_pred EcCCCCCChHHHHHHHH
Q 030831 14 VPYPSQGHINPTFQFAK 30 (171)
Q Consensus 14 vp~p~~GHl~P~l~La~ 30 (171)
=.||+||-.||-+++--
T Consensus 16 PTFPGqGP~NPKir~Py 32 (39)
T PF08026_consen 16 PTFPGQGPFNPKIRWPY 32 (39)
T ss_pred CcCCCCCCCCccccccc
Confidence 35789999998776543
No 103
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=40.35 E-value=28 Score=26.91 Aligned_cols=22 Identities=18% Similarity=0.387 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCeEEEEeccc
Q 030831 25 TFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~~ 46 (171)
.-.|+|.|+++|++|+++++..
T Consensus 22 ~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHhcCCeEEEEEccc
Confidence 4569999999999999999854
No 104
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=40.03 E-value=57 Score=25.00 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
.+..|.+=..||-|-..-||+=|++|.++|.+|.+-..+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 467888889999999999999999999999888875443
No 105
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=39.91 E-value=63 Score=25.58 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=32.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
-++++..+|.|=..-...||..|+.+|.+|.++....
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4667778899999999999999999999999999764
No 106
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=39.90 E-value=87 Score=21.25 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=32.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
||++.--++.|=......|++.|+++|.+|-++-+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4777888999999999999999999999999888765
No 107
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=39.69 E-value=29 Score=29.22 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCeEEEEeccc
Q 030831 25 TFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~~ 46 (171)
.-.|++.|+++|++|+++++..
T Consensus 22 ~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 22 VGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 3569999999999999999753
No 108
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.48 E-value=74 Score=27.24 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
..++|+++.-|+--=-. -+-.||+|+.+|+.++++...
T Consensus 265 ~~P~V~Ilcgpgnnggd-g~v~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 265 QWPLVAILCGPGNNGGD-GLVCGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCceEEEEeCCCCccch-hHHHHHHHHHcCceeEEEeec
Confidence 46789999998751111 122999999999988887754
No 109
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=39.29 E-value=8.8 Score=21.82 Aligned_cols=10 Identities=40% Similarity=1.205 Sum_probs=8.2
Q ss_pred CCCCCChHHH
Q 030831 16 YPSQGHINPT 25 (171)
Q Consensus 16 ~p~~GHl~P~ 25 (171)
|||.||+-|.
T Consensus 35 ~PGn~hlQP~ 44 (45)
T PF08384_consen 35 FPGNGHLQPL 44 (45)
T ss_pred cCCCcccCCC
Confidence 6999999774
No 110
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=39.05 E-value=75 Score=21.22 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=28.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
-++|-+-..|+...+++..+.+.++|..|..+|.....
T Consensus 55 d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 55 DLVIIISYSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp EEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred ceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 33344447889999999999998999999777754443
No 111
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=38.65 E-value=45 Score=26.27 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 20 GHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 20 GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
|--.-..+||+.|+++|+.|++++..
T Consensus 11 G~e~~~~~l~~~L~~~g~~v~v~~~~ 36 (355)
T cd03819 11 GVERGTLELARALVERGHRSLVASAG 36 (355)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 44467789999999999999998864
No 112
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=38.24 E-value=33 Score=22.30 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEec
Q 030831 25 TFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTI 65 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~ 65 (171)
++++|++|.+.|++ ++.|+...+.+... +|....+
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~----Gi~~~~v 36 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEH----GIEVTEV 36 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHT----T--EEEC
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHc----CCCceee
Confidence 57899999999965 67777777666533 4554443
No 113
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=37.98 E-value=32 Score=28.73 Aligned_cols=26 Identities=15% Similarity=0.517 Sum_probs=20.8
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 19 QGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
-||+.|++.| ++|...|+++.++...
T Consensus 46 lGh~v~l~~l-~~lq~~G~~~~iligd 71 (377)
T TIGR00234 46 LGHLVPLLKL-RDFQQAGHEVIVLLGD 71 (377)
T ss_pred HHHHHHHHHH-HHHHHCCCcEEEEEec
Confidence 3999997766 5788899999988754
No 114
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=37.71 E-value=31 Score=25.92 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEeccC--CCCC
Q 030831 25 TFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISD--GYDD 71 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~--~~p~ 71 (171)
+++||+.|.+.|+++ +.|....+.++.. +|.+..+.+ |+|+
T Consensus 13 l~~lAk~L~~lGf~I--~AT~GTAk~L~e~----GI~v~~V~k~TgfpE 55 (187)
T cd01421 13 LVEFAKELVELGVEI--LSTGGTAKFLKEA----GIPVTDVSDITGFPE 55 (187)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHHc----CCeEEEhhhccCCcH
Confidence 678999999999987 4666666655443 466666654 5665
No 115
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=37.46 E-value=44 Score=25.29 Aligned_cols=38 Identities=8% Similarity=0.099 Sum_probs=29.5
Q ss_pred eEEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEEeccccc
Q 030831 10 HVLIVPYPSQGHINP-TFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 10 hvv~vp~p~~GHl~P-~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
+|+ +-..|.....- ..+|.++|.++|++|.++.|+...
T Consensus 7 ~Il-lgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 7 RIG-FGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred EEE-EEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 444 45555666666 699999999999999999998655
No 116
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=37.05 E-value=58 Score=25.15 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=26.8
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 18 SQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 18 ~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
..|+-.=+..+++.|.+.|++|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 4688888999999999999999999976544
No 117
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=36.63 E-value=1.8e+02 Score=21.68 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=35.4
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 8 ~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
...|.+-=.||.|-..=.+.++..|..+|++|-=+.|+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 46788888899999999999999999999999877776655
No 118
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=36.41 E-value=93 Score=22.19 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=32.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
+++.=.||.|=......||..++.+|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 45667789999999999999999999999999977543
No 119
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=36.41 E-value=91 Score=23.50 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=59.3
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc-c-----ccCCCCCCCCceEEeccCCCCCCCCCCcccH
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY-K-----TKKPPQPSDSVQIDTISDGYDDGGFSEAESI 80 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~-~-----~~~~~~~~~~i~f~~~~~~~p~~~~~~~~~~ 80 (171)
.+.-|.++--++.|=....+.+|-+.+.+|.+|.++---... . .+.. .+++.+.....++.- .. .+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~---l~~v~~~~~g~~~~~---~~-~~~ 93 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF---GGGVEFHVMGTGFTW---ET-QDR 93 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc---CCCcEEEECCCCCcc---cC-CCc
Confidence 356799999999999999999999999999999987642211 0 1111 246888877654321 11 111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCCCCccEEEeCCcc
Q 030831 81 DAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFL 118 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iI~D~~~ 118 (171)
....... ...++.+.+.+.+ ...+.||-|-.+
T Consensus 94 ~e~~~~~----~~~~~~a~~~l~~--~~ydlvVLDEi~ 125 (191)
T PRK05986 94 ERDIAAA----REGWEEAKRMLAD--ESYDLVVLDELT 125 (191)
T ss_pred HHHHHHH----HHHHHHHHHHHhC--CCCCEEEEehhh
Confidence 1111111 1223333333332 357899999765
No 120
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=36.36 E-value=65 Score=24.89 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=26.3
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 16 YPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 16 ~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
+..-|.-..+.+|++.|.+.|+.|.+++...
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~ 39 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHVVISLTD 39 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEEEEecCc
Confidence 3446899999999999999999999988654
No 121
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=36.20 E-value=74 Score=23.79 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=30.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
+++|=..|-|=..-..+||.++..+|.+|.++++....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 55666779999999999999999999999999986543
No 122
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=35.82 E-value=84 Score=20.89 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=31.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
+++....++..|-....-++..|.+.|+.|.++...
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~ 36 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVD 36 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCC
Confidence 367788889999999999999999999999988653
No 123
>PRK09620 hypothetical protein; Provisional
Probab=35.74 E-value=41 Score=25.96 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=23.0
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 14 VPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 14 vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
+.-...|.+= .+||+.|..+|++|+++...
T Consensus 23 itN~SSGfiG--s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 23 HTNMAKGTIG--RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred ecCCCcCHHH--HHHHHHHHHCCCeEEEEeCC
Confidence 3344556665 78999999999999999754
No 124
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.44 E-value=49 Score=24.06 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCCCh-HHHHHHHHHHHhCCCeEEEEec
Q 030831 7 HRAHVLIVPYPSQGHI-NPTFQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl-~P~l~La~~L~~~g~~VT~~~t 44 (171)
....|+++.-++. = -=-+-+|++|+.+|+.|+++..
T Consensus 24 ~~~~v~il~G~Gn--NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 24 KGPRVLILCGPGN--NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp TT-EEEEEE-SSH--HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCeEEEEECCCC--ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 3467777776653 1 1237799999999999999554
No 125
>PLN02891 IMP cyclohydrolase
Probab=34.59 E-value=32 Score=30.17 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEeccC--CCCC
Q 030831 25 TFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISD--GYDD 71 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~--~~p~ 71 (171)
+.+||+.|.++|+. ++.|....+.++.. +|.+..+.+ |+|+
T Consensus 35 i~~fAk~L~~~gve--IiSTgGTak~L~e~----Gi~v~~Vsd~TgfPE 77 (547)
T PLN02891 35 LALLANGLQELGYT--IVSTGGTASALEAA----GVSVTKVEELTNFPE 77 (547)
T ss_pred HHHHHHHHHHCCCE--EEEcchHHHHHHHc----CCceeeHHhccCCch
Confidence 57999999998866 67777777766543 577777765 6665
No 126
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.33 E-value=49 Score=23.05 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCeEEEEec
Q 030831 25 TFQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t 44 (171)
.++.|++|+.+|++|+..-.
T Consensus 25 ~~~VA~~L~e~g~dv~atDI 44 (129)
T COG1255 25 FLDVAKRLAERGFDVLATDI 44 (129)
T ss_pred HHHHHHHHHHcCCcEEEEec
Confidence 57899999999988876543
No 127
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=33.96 E-value=27 Score=21.78 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCCeEEEEeccc
Q 030831 25 TFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~~ 46 (171)
=-+|...|..+|+.||=.|...
T Consensus 22 Q~eL~~~L~~~Gi~vTQaTiSR 43 (70)
T PF01316_consen 22 QEELVELLEEEGIEVTQATISR 43 (70)
T ss_dssp HHHHHHHHHHTT-T--HHHHHH
T ss_pred HHHHHHHHHHcCCCcchhHHHH
Confidence 3478999999999988655443
No 128
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=33.90 E-value=44 Score=25.65 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=25.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
|=++.-.+.|-+= .+||+.|+++|++|+++...
T Consensus 17 VR~itN~SSG~iG--~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 17 VRGITNHSTGQLG--KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred ceeecCccchHHH--HHHHHHHHhCCCEEEEEECc
Confidence 4455666666655 67899999999999998743
No 129
>PRK00654 glgA glycogen synthase; Provisional
Probab=33.89 E-value=62 Score=27.44 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=23.5
Q ss_pred cCCCCCChHH-HHHHHHHHHhCCCeEEEEeccc
Q 030831 15 PYPSQGHINP-TFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 15 p~p~~GHl~P-~l~La~~L~~~g~~VT~~~t~~ 46 (171)
|+.-.|=+.- .-.|++.|+++|++|+++++..
T Consensus 12 P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y 44 (466)
T PRK00654 12 PLIKTGGLGDVVGALPKALAALGHDVRVLLPGY 44 (466)
T ss_pred cCcccCcHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3333555544 4579999999999999999753
No 130
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.94 E-value=1e+02 Score=19.11 Aligned_cols=33 Identities=21% Similarity=0.613 Sum_probs=25.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~ 43 (171)
+|+++++ ..++..-.+++++.|-+.|++|.+-.
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~ 35 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDL 35 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEEC
Confidence 5666665 46778888999999999999988744
No 131
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=32.94 E-value=90 Score=26.68 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=34.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
.-|+++-.+|.|=..-...||..|..+|++|.++.+....
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 3577788899999999999999999999999999876543
No 132
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=32.93 E-value=1.1e+02 Score=20.25 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=26.7
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEec
Q 030831 12 LIVPYPSQGHINPTFQFAKRLASK-GLKITLAIT 44 (171)
Q Consensus 12 v~vp~p~~GHl~P~l~La~~L~~~-g~~VT~~~t 44 (171)
+++|.-+..+-..+++.|..|+.. +.+|++++.
T Consensus 2 ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v 35 (132)
T cd01988 2 ILVPVANPNTARDLLELAAALARAQNGEIIPLNV 35 (132)
T ss_pred EEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 468888888888999999999974 677777664
No 133
>PLN02846 digalactosyldiacylglycerol synthase
Probab=32.77 E-value=91 Score=26.88 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=30.2
Q ss_pred CCceEEEEcC---CCC-CChHHHHHHHHHHHhCC-CeEEEEeccc
Q 030831 7 HRAHVLIVPY---PSQ-GHINPTFQFAKRLASKG-LKITLAITNF 46 (171)
Q Consensus 7 ~~~hvv~vp~---p~~-GHl~P~l~La~~L~~~g-~~VT~~~t~~ 46 (171)
.+.||++|.= |-. |=.+-.+.++..|+++| ++||++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 4578888864 333 65466778888999999 7999998754
No 134
>KOG2848 consensus 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]
Probab=32.72 E-value=88 Score=24.91 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=41.8
Q ss_pred ccCCCceEEEEcCCCC---CChHHHHHHHHHHHhCC----CeEEEEeccccccccCCCCCCCCceEEeccCCCCCCCCCC
Q 030831 4 KKIHRAHVLIVPYPSQ---GHINPTFQFAKRLASKG----LKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSE 76 (171)
Q Consensus 4 ~~~~~~hvv~vp~p~~---GHl~P~l~La~~L~~~g----~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~~~p~~~~~~ 76 (171)
++.++..|-++|=--. |-+.|+=+=|-.||.+. +.|+|-++....+.-...-..+++.+..+|+ +|.+|. .
T Consensus 159 mkk~~~kvWvFPEGTRn~~g~llPFKKGAF~lAvqaqVPIVPvv~ssy~~f~~~~~k~f~sG~v~V~vL~p-I~Tegl-T 236 (276)
T KOG2848|consen 159 MKKENRKVWVFPEGTRNKEGRLLPFKKGAFHLAVQAQVPIVPVVFSSYGDFYSTKEKVFNSGNVIVRVLPP-IPTEGL-T 236 (276)
T ss_pred HHhCCeeEEEccCCccCCCCcccccccceeeeehhcCCCEEEEEEecccccccCccceeecceEEEEEcCC-CCccCC-C
Confidence 3334455555554332 45555555555555443 3333333332221111100123455544542 443232 3
Q ss_pred cccHHHHHHHHHHHhHHHHHHH
Q 030831 77 AESIDAYLQNMEVAGLKTLAEL 98 (171)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ 98 (171)
.+|+..+....+..+.+.++++
T Consensus 237 ~ddv~~L~~~~R~~M~~~~~ei 258 (276)
T KOG2848|consen 237 KDDVDVLSDECRSAMLETFKEI 258 (276)
T ss_pred cccHHHHHHHHHHHHHHHHHHh
Confidence 4566677777776665555443
No 135
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=32.38 E-value=1e+02 Score=20.62 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEe
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGL-KITLAI 43 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~-~VT~~~ 43 (171)
.++.++.+......|.....++++++.+++. ++.++.
T Consensus 49 ~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~v 86 (119)
T cd02067 49 EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLV 86 (119)
T ss_pred cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEE
Confidence 4567777777777777777777777777665 555544
No 136
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=32.09 E-value=50 Score=25.19 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=15.2
Q ss_pred HHHHHHhhcCCCCccEEEeCCccc
Q 030831 96 AELITKYKSSSNPIDCVVYDAFLY 119 (171)
Q Consensus 96 ~~~l~~l~~~~~~~~~iI~D~~~~ 119 (171)
+++.+++. +++++|||+||...
T Consensus 126 ~ki~e~lp--~r~VdvVlSDMapn 147 (232)
T KOG4589|consen 126 RKIFEALP--NRPVDVVLSDMAPN 147 (232)
T ss_pred HHHHHhCC--CCcccEEEeccCCC
Confidence 44444443 37899999999764
No 137
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=31.96 E-value=46 Score=28.18 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEecccc
Q 030831 23 NPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 23 ~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
.=.-.|++.|+++|++|.++++...
T Consensus 21 ~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 21 DVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCc
Confidence 3346799999999999999997543
No 138
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=31.70 E-value=51 Score=27.63 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCC--eEEEEecc
Q 030831 23 NPTFQFAKRLASKGL--KITLAITN 45 (171)
Q Consensus 23 ~P~l~La~~L~~~g~--~VT~~~t~ 45 (171)
.-+.+||+.|+++|+ +|+++|..
T Consensus 30 ~~v~~La~~L~~~G~~~~V~v~t~~ 54 (439)
T TIGR02472 30 KYVLELARALARRSEVEQVDLVTRL 54 (439)
T ss_pred hHHHHHHHHHHhCCCCcEEEEEecc
Confidence 456799999999986 99999954
No 139
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=31.05 E-value=45 Score=25.69 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCeEEEEecccc
Q 030831 24 PTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 24 P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
++++|.+.+.++|+.|-|++...-
T Consensus 119 ~a~~l~~~~~~~G~~V~~iT~R~~ 142 (229)
T PF03767_consen 119 GALELYNYARSRGVKVFFITGRPE 142 (229)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEET
T ss_pred HHHHHHHHHHHCCCeEEEEecCCc
Confidence 389999999999999999997543
No 140
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=30.93 E-value=60 Score=25.56 Aligned_cols=32 Identities=9% Similarity=0.109 Sum_probs=26.4
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 17 PSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 17 p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
..-|.-.-+.++++.|.++|+.|++++.....
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 35578888899999999999999999975433
No 141
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=30.45 E-value=71 Score=22.48 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=18.9
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 18 SQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 18 ~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
|.||+. ..|++....-|++||++-..
T Consensus 5 GaG~va--~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 5 GAGHVA--RALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp S-STCH--HHHHHHHHHCTEEEEEEES-
T ss_pred eCcHHH--HHHHHHHHhCCCEEEEEcCC
Confidence 678886 55666666679999999875
No 142
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=30.42 E-value=1.2e+02 Score=23.61 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccc
Q 030831 23 NPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 23 ~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
.-+.++++.|.++|++|++++...
T Consensus 15 ~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 15 TFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred HHHHHHHHHHHhCCCeEEEEEecC
Confidence 457889999999999999998643
No 143
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=30.02 E-value=52 Score=26.15 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCeEEEEec
Q 030831 26 FQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 26 l~La~~L~~~g~~VT~~~t 44 (171)
.++|++|+++|+++.++.-
T Consensus 20 ~~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 20 AELAKQLARRGYNLILVAR 38 (265)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 6899999999999998874
No 144
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=30.01 E-value=72 Score=25.53 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEecccc
Q 030831 21 HINPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 21 Hl~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
.+-++++|.+.|.++|++|-|++...-
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 456999999999999999999997643
No 145
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=29.79 E-value=68 Score=24.87 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHhCCCeEEEEecccc
Q 030831 22 INPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 22 l~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
+-++++|.+.|.++|+.|-|+|...-
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 45789999999999999999997543
No 146
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=29.78 E-value=86 Score=24.42 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=32.6
Q ss_pred EEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 030831 11 VLIVPY-PSQGHINPTFQFAKRLASKGLKITLAITNFIYKT 50 (171)
Q Consensus 11 vv~vp~-p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~ 50 (171)
|.+... -|-|=..-.+-||..|+++|-+|+++=+..+...
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 333443 4779999999999999999999999998877653
No 147
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=29.57 E-value=1.4e+02 Score=18.19 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~ 43 (171)
+++.-.++.|=..-...||..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 344555677888888999999999999988766
No 148
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=29.29 E-value=54 Score=20.93 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccC
Q 030831 25 TFQFAKRLASKGLKITLAITNFIYKTKK 52 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~~~~~~~~ 52 (171)
++++++.|++.|++| +.|+...+.++
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~ 27 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLR 27 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHH
Confidence 478999999999887 45555555444
No 149
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=28.94 E-value=1.6e+02 Score=19.59 Aligned_cols=34 Identities=15% Similarity=0.015 Sum_probs=24.1
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 12 LIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 12 v~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
++++-. .|.-.-+..+++.|+++|+.|..+..+.
T Consensus 3 v~~HG~-~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 36 (145)
T PF12695_consen 3 VLLHGW-GGSRRDYQPLAEALAEQGYAVVAFDYPG 36 (145)
T ss_dssp EEECTT-TTTTHHHHHHHHHHHHTTEEEEEESCTT
T ss_pred EEECCC-CCCHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 333333 3456678999999999999888875443
No 150
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=28.74 E-value=1.4e+02 Score=20.18 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 8 ~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
...|++|.+-..- ...++.++.|.+.|++++++....
T Consensus 9 g~di~iia~G~~~--~~al~A~~~L~~~Gi~~~vi~~~~ 45 (124)
T PF02780_consen 9 GADITIIAYGSMV--EEALEAAEELEEEGIKAGVIDLRT 45 (124)
T ss_dssp SSSEEEEEETTHH--HHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCEEEEeehHHH--HHHHHHHHHHHHcCCceeEEeeEE
Confidence 4567777765553 566999999999999999988643
No 151
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=28.69 E-value=58 Score=23.24 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEecccccccc
Q 030831 23 NPTFQFAKRLASKGLKITLAITNFIYKTK 51 (171)
Q Consensus 23 ~P~l~La~~L~~~g~~VT~~~t~~~~~~~ 51 (171)
--.|-|+.+|-.+|++|++..++...+.+
T Consensus 14 p~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 14 PSALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 34578999999999999999998877655
No 152
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=28.34 E-value=2.4e+02 Score=20.73 Aligned_cols=86 Identities=9% Similarity=0.061 Sum_probs=43.9
Q ss_pred hCCCeEEEEeccccccccCCCCCCCCceEEeccCCCCCCCCCCcccHH-HHHHHHHHHhHHHHHHHHHHhhcCCCCccEE
Q 030831 34 SKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESID-AYLQNMEVAGLKTLAELITKYKSSSNPIDCV 112 (171)
Q Consensus 34 ~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i 112 (171)
++|++|+|++........ ++++.+.+.. +........... .+...+.. . ..+.+.+.+|.++|-.||.|
T Consensus 1 q~gh~v~fl~~~~~~~~~------~GV~~~~y~~--~~~~~~~~~~~~~~~e~~~~r-g-~av~~a~~~L~~~Gf~PDvI 70 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP------PGVRVVRYRP--PRGPTPGTHPYVRDFEAAVLR-G-QAVARAARQLRAQGFVPDVI 70 (171)
T ss_pred CCCCEEEEEecCCCCCCC------CCcEEEEeCC--CCCCCCCCCcccccHHHHHHH-H-HHHHHHHHHHHHcCCCCCEE
Confidence 368999999954433221 3677777743 110001111111 11122221 1 23455566666667678999
Q ss_pred EeCCccccHHHHHhhCC
Q 030831 113 VYDAFLYWALDVAKDMP 129 (171)
Q Consensus 113 I~D~~~~w~~~vA~dlP 129 (171)
|.-.-.+-+.-+-+-.|
T Consensus 71 ~~H~GWGe~Lflkdv~P 87 (171)
T PF12000_consen 71 IAHPGWGETLFLKDVFP 87 (171)
T ss_pred EEcCCcchhhhHHHhCC
Confidence 98875555555555333
No 153
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.21 E-value=81 Score=25.13 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=27.3
Q ss_pred cCCCceEEEEcCCCCCChHHHHHHHHHHHh
Q 030831 5 KIHRAHVLIVPYPSQGHINPTFQFAKRLAS 34 (171)
Q Consensus 5 ~~~~~hvv~vp~p~~GHl~P~l~La~~L~~ 34 (171)
++..||+++--.||.|-....+-||++|.-
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 457899999999999999999999999975
No 154
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=28.05 E-value=36 Score=22.55 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=10.9
Q ss_pred cCCCCEEEEcchh
Q 030831 152 ADRADLVLVNTFY 164 (171)
Q Consensus 152 ~~~a~gvlvNTf~ 164 (171)
..+||-+++|||-
T Consensus 34 ~e~AD~iiiNTC~ 46 (98)
T PF00919_consen 34 PEEADVIIINTCT 46 (98)
T ss_pred cccCCEEEEEcCC
Confidence 4678999999984
No 155
>PRK13604 luxD acyl transferase; Provisional
Probab=27.71 E-value=1.9e+02 Score=23.57 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=23.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~ 43 (171)
++++.-...|+-.-+..+|+.|+++|+.|..+=
T Consensus 39 ~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 39 TILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 444444444555569999999999998876543
No 156
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.76 E-value=36 Score=21.45 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEe
Q 030831 23 NPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 23 ~P~l~La~~L~~~g~~VT~~~ 43 (171)
+=++.|..++-++|..|+|..
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~ 52 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQ 52 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHH
Confidence 347889999999999999865
No 157
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=26.68 E-value=40 Score=26.35 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=15.0
Q ss_pred CCChHHHHHHHHHHHhC
Q 030831 19 QGHINPTFQFAKRLASK 35 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~ 35 (171)
-||+||.+-+|..+..+
T Consensus 67 GaH~NPAVT~a~~~~~~ 83 (238)
T KOG0223|consen 67 GAHFNPAVTLAFAVGGK 83 (238)
T ss_pred ccccCHHHHHHHHHhCC
Confidence 49999999999998766
No 158
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.63 E-value=1.3e+02 Score=18.27 Aligned_cols=34 Identities=24% Similarity=0.533 Sum_probs=26.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEec
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t 44 (171)
.|+++++. ..+..-.+++++.|...|+.|-+...
T Consensus 3 ~v~i~~~~-~~~~~~a~~i~~~Lr~~g~~v~~~~~ 36 (91)
T cd00859 3 DVYVVPLG-EGALSEALELAEQLRDAGIKAEIDYG 36 (91)
T ss_pred cEEEEEcC-hHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 46666654 56778899999999999998876443
No 159
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=26.52 E-value=60 Score=25.72 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEec
Q 030831 20 GHINPTFQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 20 GHl~P~l~La~~L~~~g~~VT~~~t 44 (171)
||+.| +...++|...|+++.++..
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~ 39 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIG 39 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEe
Confidence 99999 7777888888999888664
No 160
>PRK10867 signal recognition particle protein; Provisional
Probab=26.51 E-value=1.3e+02 Score=25.78 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=33.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeccccc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASK-GLKITLAITNFIY 48 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~-g~~VT~~~t~~~~ 48 (171)
-|+++-.+|.|=..-...||..|..+ |.+|.++......
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 35666778999999999999999998 9999999987554
No 161
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=25.69 E-value=1.3e+02 Score=23.41 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=23.7
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEecccc
Q 030831 19 QGHINPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
-|--.=...|++.|+++|+.|+++.....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 35557778999999999999999886544
No 162
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.53 E-value=1.8e+02 Score=19.41 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=27.2
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 13 IVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 13 ~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
++-+-..|...-+++.++.+.++|.+|..+|.....
T Consensus 51 vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 51 VIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 344456678888999999999999888777765444
No 163
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=25.45 E-value=91 Score=23.10 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCeEEEEecccccccc
Q 030831 26 FQFAKRLASKGLKITLAITNFIYKTK 51 (171)
Q Consensus 26 l~La~~L~~~g~~VT~~~t~~~~~~~ 51 (171)
.+|.++|.++|++|.++.|+...+.+
T Consensus 16 ~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 16 IRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHHHHHHCCCEEEEEECccHHHHH
Confidence 78999999999999999998766543
No 164
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=25.29 E-value=71 Score=26.18 Aligned_cols=32 Identities=25% Similarity=0.532 Sum_probs=26.1
Q ss_pred EcCCCC-CChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 14 VPYPSQ-GHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 14 vp~p~~-GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
+|||.. |.-.=+.++.+.|+++ ++||+++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 577654 8899999999999775 7999998653
No 165
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=24.68 E-value=1.7e+02 Score=24.95 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=33.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
-|+++=.+|.|=..-...||..|..+|.+|.++++....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 466677789999999999999999999999999986544
No 166
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.67 E-value=1.9e+02 Score=22.12 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=25.1
Q ss_pred CccccCCCceEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEE
Q 030831 1 MEEKKIHRAHVLIVPYP-SQGHINPTFQFAKRLASKGLKITLA 42 (171)
Q Consensus 1 m~~~~~~~~hvv~vp~p-~~GHl~P~l~La~~L~~~g~~VT~~ 42 (171)
|+.++ .++++|.-. +.+-+= ..+|++|+++|.+|.+.
T Consensus 1 ~~~~~---~k~~lITGa~~~~GIG--~a~a~~l~~~G~~v~~~ 38 (261)
T PRK08690 1 MGFLQ---GKKILITGMISERSIA--YGIAKACREQGAELAFT 38 (261)
T ss_pred CCccC---CcEEEEECCCCCCcHH--HHHHHHHHHCCCEEEEE
Confidence 66653 346667664 223333 88999999999998875
No 167
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=24.66 E-value=1.9e+02 Score=21.35 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEE
Q 030831 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITL 41 (171)
Q Consensus 8 ~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~ 41 (171)
++-||++ .=..|--.-+.++|.+|+++|+.|..
T Consensus 14 ~~~Vvv~-~d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 14 RPAVVVI-HDIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEEEE--BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred CCEEEEE-cCCCCCchHHHHHHHHHHhcCCCEEe
Confidence 3445544 46678777777999999999977654
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=24.65 E-value=1.2e+02 Score=19.70 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 8 ~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
..+++++-.||.|-..-+..+|+.+...+..+-+++.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 46889999999999999999999988776455555554433
No 169
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=24.49 E-value=1.5e+02 Score=25.30 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=33.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeccccc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLA-SKGLKITLAITNFIY 48 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~-~~g~~VT~~~t~~~~ 48 (171)
-++++-.+|.|=..-...||..|. .+|.+|.++......
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 466777789999999999999997 589999999987554
No 170
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=24.36 E-value=2e+02 Score=21.08 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=29.1
Q ss_pred ceEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 9 AHVLIVPY--PSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 9 ~hvv~vp~--p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
.+++.|.. ++.|=..=...||..|+++|.+|.++-..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 55555554 56788888999999999999999887654
No 171
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=24.35 E-value=1.7e+02 Score=24.47 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=29.2
Q ss_pred CceEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEe
Q 030831 8 RAHVLIVPY--PSQGHINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 8 ~~hvv~vp~--p~~GHl~P~l~La~~L~~~g~~VT~~~ 43 (171)
+..|+.|.- .|.|=..-.++||..|+.+|++|-++=
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 345554444 688999999999999999999998886
No 172
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=24.33 E-value=46 Score=25.23 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=13.0
Q ss_pred CChHHHHHHHHHHHhC
Q 030831 20 GHINPTFQFAKRLASK 35 (171)
Q Consensus 20 GHl~P~l~La~~L~~~ 35 (171)
||+||.+-++..+..+
T Consensus 71 aH~NPaVTla~~l~g~ 86 (227)
T PF00230_consen 71 AHFNPAVTLAFALTGR 86 (227)
T ss_dssp SS-SHHHHHHHHHTTS
T ss_pred cccccchhhheeeeee
Confidence 8999999999998753
No 173
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=24.22 E-value=1.1e+02 Score=21.68 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=25.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 17 PSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 17 p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
+|.|=..-.+.||..|++.|.+|.++-..
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 67788888999999999999999988754
No 174
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=24.15 E-value=91 Score=26.38 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEecccc
Q 030831 20 GHINPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 20 GHl~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
||+.|++.| ++|...|+++.++.....
T Consensus 50 Ghlv~l~~l-~~lq~~G~~~~~ligd~t 76 (410)
T PRK13354 50 GHLVPLMKL-KRFQDAGHRPVILIGGFT 76 (410)
T ss_pred hhHHHHHHH-HHHHHcCCeEEEEEcccc
Confidence 999996664 577889999988885433
No 175
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.07 E-value=2.2e+02 Score=21.67 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCC-ChHHHHHHHHHHHhCCCeEEEEe
Q 030831 8 RAHVLIVPYPSQG-HINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 8 ~~hvv~vp~p~~G-Hl~P~l~La~~L~~~g~~VT~~~ 43 (171)
+.++++|.-.+.| -+= ..+|++|+++|++|.++.
T Consensus 9 ~~k~~lItGas~g~GIG--~a~a~~la~~G~~v~l~~ 43 (258)
T PRK07533 9 AGKRGLVVGIANEQSIA--WGCARAFRALGAELAVTY 43 (258)
T ss_pred CCCEEEEECCCCCCcHH--HHHHHHHHHcCCEEEEEe
Confidence 4567888876642 333 789999999999987764
No 176
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=23.99 E-value=84 Score=24.09 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 030831 13 IVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 13 ~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~ 43 (171)
++.-++.|=+= ..+|++|+++|++|+++.
T Consensus 18 ~itN~SSGgIG--~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 18 SITNHSTGHLG--KIITETFLSAGHEVTLVT 46 (227)
T ss_pred eecCCcccHHH--HHHHHHHHHCCCEEEEEc
Confidence 34444444444 578999999999999875
No 177
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=23.94 E-value=1.4e+02 Score=22.63 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=33.1
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEec
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t 44 (171)
.++++|.+++....|+.-+-++.++|.+.|.++.++..
T Consensus 138 ~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vG 175 (213)
T cd02069 138 HKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIG 175 (213)
T ss_pred cCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEE
Confidence 57899999999999999999999999988877776654
No 178
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=23.65 E-value=1.8e+02 Score=20.99 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=26.4
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 14 VPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 14 vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
|-+-..|...-+++.++.+.++|..|..+|.....
T Consensus 77 I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 77 IAISGSGETESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred EEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 33445677888899999999999998888764443
No 179
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=23.64 E-value=1.7e+02 Score=18.73 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=22.5
Q ss_pred EEcCCCCCChHHHHHHHHHHHhC-CCeEEEEec
Q 030831 13 IVPYPSQGHINPTFQFAKRLASK-GLKITLAIT 44 (171)
Q Consensus 13 ~vp~p~~GHl~P~l~La~~L~~~-g~~VT~~~t 44 (171)
+||.-...--..+++.|..++.. |.++|++..
T Consensus 3 lv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v 35 (130)
T cd00293 3 LVAVDGSEESERALRWAARLARRLGAELVLLHV 35 (130)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 35555455556788899998874 788887774
No 180
>PRK07576 short chain dehydrogenase; Provisional
Probab=23.48 E-value=2e+02 Score=21.98 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=22.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEec
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t 44 (171)
.++|. -+.|.+- ..++++|+++|++|.++.-
T Consensus 11 ~ilIt-GasggIG--~~la~~l~~~G~~V~~~~r 41 (264)
T PRK07576 11 NVVVV-GGTSGIN--LGIAQAFARAGANVAVASR 41 (264)
T ss_pred EEEEE-CCCchHH--HHHHHHHHHCCCEEEEEeC
Confidence 33343 3566666 7789999999999888763
No 181
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.43 E-value=1.9e+02 Score=19.20 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=24.7
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEecccc
Q 030831 16 YPSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 16 ~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
.-..|...-+++.++...++|.+|..+|....
T Consensus 53 iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 53 ISQSGETADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred EeCCcCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 44467777899999999999988877776533
No 182
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=23.30 E-value=2.2e+02 Score=22.07 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
.++.|++++-.+.+.- -.-.++..|.++|++|..+--+.
T Consensus 17 ~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl~g 55 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDLKS 55 (273)
T ss_pred CCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEecccC
Confidence 4568999888665443 35667788888899888766543
No 183
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=23.18 E-value=95 Score=24.49 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=21.5
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEecccc
Q 030831 19 QGHINPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
-||+.|++ ..++|...|+++.++.....
T Consensus 16 LG~~~~~~-~~~~lq~~g~~~~ilI~D~~ 43 (269)
T cd00805 16 LGHLVPLM-KLRDFQQAGHEVIVLIGDAT 43 (269)
T ss_pred HHHHHHHH-HHHHHHHCCCeEEEEECCCe
Confidence 49999976 67777777999888776543
No 184
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=23.13 E-value=1.3e+02 Score=21.54 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=41.5
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeccccccccCCCCC-CCCceEEecc
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKG--LKITLAITNFIYKTKKPPQP-SDSVQIDTIS 66 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g--~~VT~~~t~~~~~~~~~~~~-~~~i~f~~~~ 66 (171)
...+|++|.....+|+.=.+++.+.+.... .++.+..-.-....+..... ..++.|..++
T Consensus 58 n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn 120 (142)
T PF07801_consen 58 NSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFN 120 (142)
T ss_pred cCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECC
Confidence 467999999999999999999999998864 66666554433333221111 2467777775
No 185
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.09 E-value=1.4e+02 Score=20.78 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=31.2
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEec
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGL-KITLAIT 44 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~-~VT~~~t 44 (171)
.+++++.++....+|+-=+-++.++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4688999999999999889999999988886 5555553
No 186
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=22.92 E-value=96 Score=21.47 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCeEEEEeccc
Q 030831 27 QFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 27 ~La~~L~~~g~~VT~~~t~~ 46 (171)
-+|.+|++.|++|+++....
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 47889999999999999877
No 187
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=22.92 E-value=1.1e+02 Score=22.64 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=27.7
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 030831 15 PYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTK 51 (171)
Q Consensus 15 p~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~ 51 (171)
-..|.....-..+|.++|.++|++|..+.|+...+.+
T Consensus 6 gvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 6 AVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred EEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 3344445556679999999999999999988766544
No 188
>PLN02939 transferase, transferring glycosyl groups
Probab=22.82 E-value=2.3e+02 Score=26.98 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=31.7
Q ss_pred CCceEEEEc-----CCCCCChHHHH-HHHHHHHhCCCeEEEEecccc
Q 030831 7 HRAHVLIVP-----YPSQGHINPTF-QFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 7 ~~~hvv~vp-----~p~~GHl~P~l-~La~~L~~~g~~VT~~~t~~~ 47 (171)
++.||++|. |.-.|-+-.++ .|++.|+.+|+.|.++++.+.
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 567999874 44457775554 599999999999999998653
No 189
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.78 E-value=1.6e+02 Score=23.15 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=25.5
Q ss_pred CccccCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEE
Q 030831 1 MEEKKIHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITL 41 (171)
Q Consensus 1 m~~~~~~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~ 41 (171)
||.++ .+.++++.--++|-+- -.||+++++.|+.|.-
T Consensus 1 ~e~~~--~~k~VlItgcs~GGIG--~ala~ef~~~G~~V~A 37 (289)
T KOG1209|consen 1 SELQS--QPKKVLITGCSSGGIG--YALAKEFARNGYLVYA 37 (289)
T ss_pred CCccc--CCCeEEEeecCCcchh--HHHHHHHHhCCeEEEE
Confidence 45543 4556666666666654 4789999999998753
No 190
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.75 E-value=2.2e+02 Score=21.21 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=23.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEec
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t 44 (171)
+.++|. -+.|.+- ..++++|+++|++|+++.-
T Consensus 7 k~vlIt-G~sg~iG--~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 7 PRALIT-GASSGIG--KATALAFAKAGWDLALVAR 38 (241)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeC
Confidence 344444 3456665 7889999999999988774
No 191
>PLN02275 transferase, transferring glycosyl groups
Probab=22.74 E-value=3.1e+02 Score=22.28 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=36.8
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCC-CeEEEEeccccccccCCCCCCCCceEEeccC
Q 030831 8 RAHVLIVPYPSQGHINPTFQFAKRLASKG-LKITLAITNFIYKTKKPPQPSDSVQIDTISD 67 (171)
Q Consensus 8 ~~hvv~vp~p~~GHl~P~l~La~~L~~~g-~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~ 67 (171)
+.||+++ +-.|.---+..+++.|+++| +.||+++.+...... ......++++..++.
T Consensus 6 ~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~-~~~~~~~v~v~r~~~ 63 (371)
T PLN02275 6 RAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIP-ALLNHPSIHIHLMVQ 63 (371)
T ss_pred EEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCH-HHhcCCcEEEEECCC
Confidence 4566555 67777788889999999987 579999854332111 110123578887763
No 192
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=22.69 E-value=1.8e+02 Score=18.63 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHh--CCCeEEEEecccccc
Q 030831 22 INPTFQFAKRLAS--KGLKITLAITNFIYK 49 (171)
Q Consensus 22 l~P~l~La~~L~~--~g~~VT~~~t~~~~~ 49 (171)
+.|++.+.+.+.+ .+.+|+++-...+.+
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~~~ 37 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGARTPE 37 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESSGG
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEcccc
Confidence 6899999999995 568899987655443
No 193
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=22.60 E-value=90 Score=27.31 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEeccC--CCCC
Q 030831 24 PTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISD--GYDD 71 (171)
Q Consensus 24 P~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~--~~p~ 71 (171)
=+++||+.|.+.|+++ +.|....+.+... +|.+..+.+ |+|+
T Consensus 16 ~iv~lAk~L~~lGfeI--~AT~GTak~L~e~----GI~v~~V~k~TgfpE 59 (513)
T PRK00881 16 GIVEFAKALVELGVEI--LSTGGTAKLLAEA----GIPVTEVSDVTGFPE 59 (513)
T ss_pred cHHHHHHHHHHCCCEE--EEcchHHHHHHHC----CCeeEEeecccCCch
Confidence 3689999999999987 4666666655443 465555543 5554
No 194
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=22.53 E-value=2.4e+02 Score=23.95 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=32.9
Q ss_pred CCceEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 7 HRAHVLIVPY-PSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 7 ~~~hvv~vp~-p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
..+-|+++|- ++.+|-.=+.+|+.++.++|+++.++|...
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 4577888887 566777777889999999999999999754
No 195
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=22.47 E-value=1.2e+02 Score=22.52 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=28.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTK 51 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~ 51 (171)
+|++.-.-+.| ..=..++.++|.++|++|.++.|+...+.+
T Consensus 3 ~Ill~vtGsia-a~~~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 3 NILLAVSGSIA-AYKAADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred EEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 34444333334 344789999999999999999998765544
No 196
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.45 E-value=97 Score=24.21 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=25.8
Q ss_pred ceEEEEcCCCC-CChHHHHHHHHHHHhCCCeEEEEec
Q 030831 9 AHVLIVPYPSQ-GHINPTFQFAKRLASKGLKITLAIT 44 (171)
Q Consensus 9 ~hvv~vp~p~~-GHl~P~l~La~~L~~~g~~VT~~~t 44 (171)
.+|+++.-+|. |= =-+-+|++|..+|++|+++..
T Consensus 61 ~~V~VlcG~GNNGG--DGlv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGG--DGLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCch--hHHHHHHHHHHCCCeEEEEEc
Confidence 46888887765 21 127789999999999999873
No 197
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=22.21 E-value=87 Score=27.36 Aligned_cols=41 Identities=24% Similarity=0.423 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCCCCCceEEeccC--CCCC
Q 030831 25 TFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISD--GYDD 71 (171)
Q Consensus 25 ~l~La~~L~~~g~~VT~~~t~~~~~~~~~~~~~~~i~f~~~~~--~~p~ 71 (171)
+++||+.|...|++| +.|....+.++.. +|.+..+.+ |+|+
T Consensus 13 iv~lAk~L~~lGfeI--iATgGTak~L~e~----GI~v~~Vsk~TgfPE 55 (511)
T TIGR00355 13 IVEFAQGLVERGVEL--LSTGGTAKLLAEA----GVPVTEVSDYTGFPE 55 (511)
T ss_pred HHHHHHHHHHCCCEE--EEechHHHHHHHC----CCeEEEeecccCCch
Confidence 578999999999987 4666666655443 466666554 5665
No 198
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=22.14 E-value=2.3e+02 Score=22.09 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
.-|+|+-.|.+--=.-++.+||+|...++.|-+++-..
T Consensus 109 riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE 146 (259)
T KOG2884|consen 109 RIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGE 146 (259)
T ss_pred EEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEecc
Confidence 45788888988666789999999999998888887643
No 199
>PRK04280 arginine repressor; Provisional
Probab=22.12 E-value=71 Score=22.94 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCeEEEEeccccc
Q 030831 26 FQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 26 l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
-+|+.+|..+|+.||=.|....-
T Consensus 22 eeL~~~L~~~Gi~vTQATiSRDi 44 (148)
T PRK04280 22 DELVDRLREEGFNVTQATVSRDI 44 (148)
T ss_pred HHHHHHHHHcCCCeehHHHHHHH
Confidence 37899999999999877654433
No 200
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=22.05 E-value=1.3e+02 Score=22.34 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=27.0
Q ss_pred cCCCCCChHH-HHHHHHHHHh-CCCeEEEEecccccc
Q 030831 15 PYPSQGHINP-TFQFAKRLAS-KGLKITLAITNFIYK 49 (171)
Q Consensus 15 p~p~~GHl~P-~l~La~~L~~-~g~~VT~~~t~~~~~ 49 (171)
-.-|.||... .+++.+.|.+ +|++|.++.|+...+
T Consensus 5 gitGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 5 GITGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred EEEccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 3445688865 8899999984 699999999986653
No 201
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=21.99 E-value=94 Score=25.34 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCeEEEEec
Q 030831 27 QFAKRLASKGLKITLAIT 44 (171)
Q Consensus 27 ~La~~L~~~g~~VT~~~t 44 (171)
..|++||+||++|.++.-
T Consensus 64 ayA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 64 AYARELAKRGFNVVLISR 81 (312)
T ss_pred HHHHHHHHcCCEEEEEeC
Confidence 578999999999888773
No 202
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=21.81 E-value=1.1e+02 Score=24.06 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=27.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecccc
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
.++++|. -+.| +.|++.+++.|+++|.+|+++....+
T Consensus 99 ~~~llIa-GGiG-iaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (281)
T PRK06222 99 GTVVCVG-GGVG-IAPVYPIAKALKEAGNKVITIIGARN 135 (281)
T ss_pred CeEEEEe-CcCc-HHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 3666665 3444 89999999999998889998875443
No 203
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=21.76 E-value=1.1e+02 Score=21.80 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEecccc
Q 030831 18 SQGHINPTFQFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 18 ~~GHl~P~l~La~~L~~~g~~VT~~~t~~~ 47 (171)
+.|++- -.++++|.++|++|+.++-...
T Consensus 6 atG~vG--~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 6 ATGFVG--RALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp TTSHHH--HHHHHHHHHTTSEEEEEESSGG
T ss_pred CCChHH--HHHHHHHHHCCCEEEEEecCch
Confidence 445554 4688999999999999985433
No 204
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=21.57 E-value=1.5e+02 Score=20.73 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=34.7
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 7 ~~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
.+..+-+.|..|.+-+.|.=++-++|.+.-..+.+++|..
T Consensus 45 g~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqp 84 (144)
T PF10657_consen 45 GKLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQP 84 (144)
T ss_pred CceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCC
Confidence 3567889999999999999999999998879999988753
No 205
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=21.55 E-value=92 Score=24.59 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=22.9
Q ss_pred ceEEEEcC-C-CCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 9 AHVLIVPY-P-SQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 9 ~hvv~vp~-p-~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
.+|++.-. | .+|+ .+|+.|+++|+.||+++-.
T Consensus 110 ~~V~v~ESrP~~eG~-----~~a~~L~~~GI~vtli~Ds 143 (253)
T PRK06372 110 KSVYILESRPMLEGI-----DMAKLLVKSGIDVVLLTDA 143 (253)
T ss_pred CEEEEecCCCchHHH-----HHHHHHHHCCCCEEEEehh
Confidence 35555542 4 3574 6999999999999988644
No 206
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=21.43 E-value=99 Score=26.80 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCeEEEEeccc
Q 030831 26 FQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 26 l~La~~L~~~g~~VT~~~t~~ 46 (171)
..||+.+..+|.+||+++.+.
T Consensus 286 ~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 286 FAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred HHHHHHHHHCCCcEEEEeCCc
Confidence 578999999999999999654
No 207
>PRK10116 universal stress protein UspC; Provisional
Probab=21.33 E-value=2.2e+02 Score=19.15 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=25.0
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEec
Q 030831 12 LIVPYPSQGHINPTFQFAKRLASK-GLKITLAIT 44 (171)
Q Consensus 12 v~vp~p~~GHl~P~l~La~~L~~~-g~~VT~~~t 44 (171)
++++.=+..+-.+.++.|..|+++ |.+++++..
T Consensus 6 ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v 39 (142)
T PRK10116 6 ILVAVAVTPESQQLLAKAVSIARPVNGKISLITL 39 (142)
T ss_pred EEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEE
Confidence 345665656778999999999974 788888764
No 208
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=21.30 E-value=1.7e+02 Score=22.62 Aligned_cols=43 Identities=23% Similarity=0.150 Sum_probs=36.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTK 51 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~~~ 51 (171)
.-+++.=.|+.|..+=.++++...+++|..|-++++......+
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 3466677799999999999999999999999999997665443
No 209
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=21.18 E-value=2.9e+02 Score=20.01 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~ 43 (171)
.-|.++.-++.|=....+.+|-+.+.+|.+|.|+-
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45677888999999999999999999999999954
No 210
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=21.02 E-value=3.3e+02 Score=20.11 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 030831 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 8 ~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~ 43 (171)
+.-|.++.-++.|=..-.+.+|-+.+.+|.+|.++-
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQ 40 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQ 40 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 456778888999999999999999999999997663
No 211
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.00 E-value=2.1e+02 Score=22.66 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=39.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeccccccccCCCCCCCCce-EEecc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKKPPQPSDSVQ-IDTIS 66 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~--g~~VT~~~t~~~~~~~~~~~~~~~i~-f~~~~ 66 (171)
+|+++-+.+.|=+.=+.-+.+.|.++ +.+||+++.+.+...++. .+.|+ +..++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~---~p~vd~v~~~~ 57 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL---HPAVDEVIPVA 57 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc---CCCccEEEEec
Confidence 47888888889888888888888875 899999999877655543 24453 44443
No 212
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=20.93 E-value=1.6e+02 Score=22.07 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=27.6
Q ss_pred eEEEEcCCCCCCh-HHHHHHHHHHHhCCCeEEEEe
Q 030831 10 HVLIVPYPSQGHI-NPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 10 hvv~vp~p~~GHl-~P~l~La~~L~~~g~~VT~~~ 43 (171)
-+++-|.|+.=|+ -|.-+++..|-+.|..+..+.
T Consensus 35 V~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lv 69 (194)
T TIGR03264 35 VVAVAMSPGRRHITKPVCEITYALREAGIQTSVLV 69 (194)
T ss_pred EEEEecCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 3566678999999 899999999999997755444
No 213
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=20.91 E-value=94 Score=24.83 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=24.6
Q ss_pred CCceEEEEcC-C-CCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 7 HRAHVLIVPY-P-SQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 7 ~~~hvv~vp~-p-~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
++.||++.-. | .|| .+||+.|.+.|+.||+++-..
T Consensus 134 k~~~V~v~EsrP~~qG-----~~la~eL~~~GI~vtlI~Dsa 170 (275)
T PRK08335 134 KRFKVILTESAPDYEG-----LALANELEFLGIEFEVITDAQ 170 (275)
T ss_pred CceEEEEecCCCchhH-----HHHHHHHHHCCCCEEEEeccH
Confidence 4456665542 3 355 457999999999999988543
No 214
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=20.80 E-value=1.2e+02 Score=25.58 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=22.7
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 16 YPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 16 ~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
+-|.|++- +-+|..|+++|++|+.+...
T Consensus 8 VIGlG~~G--~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 8 VIGLGYIG--LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred EECcchhh--HHHHHHHHhCCCEEEEEeCC
Confidence 34888886 67788999999999988753
No 215
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=20.71 E-value=1.9e+02 Score=22.40 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=31.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
+++..-+|.|-..-...+|..++++|.+|-++.+...+
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 34445588899999999999999999999999876543
No 216
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=20.68 E-value=2.2e+02 Score=19.62 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=25.2
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEeccccc
Q 030831 15 PYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (171)
Q Consensus 15 p~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~ 48 (171)
|.++.|=..=.+.||+.|+++|.+|-++......
T Consensus 8 ~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~ 41 (157)
T PF13614_consen 8 PKGGVGKTTLALNLAAALARKGKKVLLIDFDFFS 41 (157)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 3567788888899999999999998888765443
No 217
>PRK14974 cell division protein FtsY; Provisional
Probab=20.60 E-value=2.1e+02 Score=23.48 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=33.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeccc
Q 030831 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (171)
Q Consensus 9 ~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~ 46 (171)
.-|+++=.+|.|=..-.-.||..|..+|++|.++++..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 35777788999999999999999999999999988653
No 218
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=20.54 E-value=98 Score=22.56 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=22.9
Q ss_pred CCChHHHH----------HHHHHHHhCCCeEEEEecccc
Q 030831 19 QGHINPTF----------QFAKRLASKGLKITLAITNFI 47 (171)
Q Consensus 19 ~GHl~P~l----------~La~~L~~~g~~VT~~~t~~~ 47 (171)
.||+.|++ +|-+.++++|+.+.+++....
T Consensus 16 ~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~ 54 (157)
T PF08235_consen 16 LGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARPI 54 (157)
T ss_pred hhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCcH
Confidence 56776665 577888899999999997654
No 219
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.47 E-value=2e+02 Score=24.16 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 10 hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
.|+++ |-|+ .- +.+|+.|+.+|+.||++...
T Consensus 7 ~v~ii---G~g~-~G-~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 7 KVLVV---GAGV-SG-LALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred EEEEE---CCCH-HH-HHHHHHHHHCCCEEEEEeCC
Confidence 34444 6677 44 49999999999999988764
No 220
>PRK15043 transcriptional regulator MirA; Provisional
Probab=20.42 E-value=2.5e+02 Score=22.08 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecccccc
Q 030831 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (171)
Q Consensus 8 ~~hvv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~~~~~ 49 (171)
...++++.++.+..+ -+.=-|-+|...|++|+++..+-...
T Consensus 162 ~~~~Ll~~~~~~~~~-~lwl~a~~l~~~g~~v~vl~~~~~~~ 202 (243)
T PRK15043 162 GKDALVVGWNIHDTT-RLWLEGWIASQQGWRIDVLAHSLNQL 202 (243)
T ss_pred CCCEEEEeCCCCCcH-HHHHHHHHHhcCCceEEEeCCccccc
Confidence 346999999988822 23333556667899999998765543
No 221
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.30 E-value=2.6e+02 Score=21.37 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=22.8
Q ss_pred ceEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEE
Q 030831 9 AHVLIVPYP-SQGHINPTFQFAKRLASKGLKITLA 42 (171)
Q Consensus 9 ~hvv~vp~p-~~GHl~P~l~La~~L~~~g~~VT~~ 42 (171)
.++++|.-. +.+-+- ..+|++|+++|++|.++
T Consensus 6 ~k~vlItGas~~~GIG--~a~a~~l~~~G~~v~~~ 38 (260)
T PRK06997 6 GKRILITGLLSNRSIA--YGIAKACKREGAELAFT 38 (260)
T ss_pred CcEEEEeCCCCCCcHH--HHHHHHHHHCCCeEEEE
Confidence 356666664 233444 68999999999999875
No 222
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=20.21 E-value=2.1e+02 Score=21.42 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCC-----ChHHHHHHHHHHHhCCCeEEEEe
Q 030831 7 HRAHVLIVPYPSQG-----HINPTFQFAKRLASKGLKITLAI 43 (171)
Q Consensus 7 ~~~hvv~vp~p~~G-----Hl~P~l~La~~L~~~g~~VT~~~ 43 (171)
...+|+++|..-.+ +..-..+++..|.+.|++|-+=.
T Consensus 9 AP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~ 50 (202)
T cd00862 9 APIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDD 50 (202)
T ss_pred cCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 34689999986432 66778889999988899987744
No 223
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=20.19 E-value=2.7e+02 Score=20.78 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=31.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 11 vv~vp~p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
+.+.-.|+.|-..=.+++|...+..|.+|.|+.++
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45666789999999999999999999999999998
No 224
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=20.19 E-value=2.7e+02 Score=21.49 Aligned_cols=39 Identities=21% Similarity=0.120 Sum_probs=30.1
Q ss_pred CCceEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEecc
Q 030831 7 HRAHVLIVPY--PSQGHINPTFQFAKRLASKGLKITLAITN 45 (171)
Q Consensus 7 ~~~hvv~vp~--p~~GHl~P~l~La~~L~~~g~~VT~~~t~ 45 (171)
...+++.|.. ++.|=..=.+.||..|++.|.+|-++=..
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3456666655 56787888899999999999999888653
No 225
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=20.17 E-value=68 Score=26.08 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=14.2
Q ss_pred CCChHHHHHHHHHHHhC
Q 030831 19 QGHINPTFQFAKRLASK 35 (171)
Q Consensus 19 ~GHl~P~l~La~~L~~~ 35 (171)
-||+||.+.||.....|
T Consensus 89 GgHlNPAVS~a~~~~g~ 105 (316)
T KOG0224|consen 89 GGHLNPAVSLAMCILGR 105 (316)
T ss_pred ccccCHHHHHHHHHhcC
Confidence 49999999999887654
No 226
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=20.14 E-value=1.8e+02 Score=18.22 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=20.3
Q ss_pred CCCChHHHHHHHHHHHhCC---CeEEEEecc
Q 030831 18 SQGHINPTFQFAKRLASKG---LKITLAITN 45 (171)
Q Consensus 18 ~~GHl~P~l~La~~L~~~g---~~VT~~~t~ 45 (171)
|.|++- ..|++.|+++| .+|++++..
T Consensus 6 G~G~mg--~al~~~l~~~g~~~~~v~~~~~r 34 (96)
T PF03807_consen 6 GAGNMG--SALARGLLASGIKPHEVIIVSSR 34 (96)
T ss_dssp STSHHH--HHHHHHHHHTTS-GGEEEEEEES
T ss_pred CCCHHH--HHHHHHHHHCCCCceeEEeeccC
Confidence 677776 56788999999 999987543
Done!