BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030832
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1
Length = 241
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 14/150 (9%)
Query: 5 FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
F+ NPLSL+VPDPAFESWLRDSGYLE+LD T+ +A A +++++ ++
Sbjct: 3 FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62
Query: 55 TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
++IT SLL L T SLLT+NPF+KL+ DDFS T WT FIG SYSFPSS
Sbjct: 63 SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122
Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLY 140
++RVHEN+KR+ARNYA+LFI+FFAC+LY
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALY 152
>sp|A8G4Z1|ACSF_PROM2 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
OS=Prochlorococcus marinus (strain MIT 9215) GN=acsF
PE=3 SV=1
Length = 390
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 19 FESWLRDSG-YLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPF 77
FE+W +D + + D +V + S K T +T TH L Y + F L +PF
Sbjct: 204 FENWCQDENRHGDFFDALMKAQPRSVKSLSNKITIGGSTFTHPLFDYFHRFRYFLNNHPF 263
Query: 78 AKLTTDDFSAKTPSWTREFIGAL 100
+ W+R F+ A+
Sbjct: 264 V----------SKLWSRFFLLAV 276
>sp|Q6Y5M6|PMIP_COPDI Mitochondrial intermediate peptidase OS=Coprinellus disseminatus
GN=OCT1 PE=3 SV=1
Length = 773
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 43 VTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGS 102
+ AS T ++ +LL L+ FA LT DD AKTP F+ AL
Sbjct: 297 IYIASNSSTPEQISVLEALLRKRAELAQLIGRPSFAHLTLDDKMAKTPENVSNFLDALMD 356
Query: 103 YSFP---SSPHTLKLR--VHENV 120
++ P + HTL R H N+
Sbjct: 357 HTRPFARRALHTLAQRKQAHHNL 379
>sp|Q6VMB4|PMIP_LEUGO Mitochondrial intermediate peptidase OS=Leucoagaricus gongylophorus
GN=OCT1 PE=3 SV=1
Length = 760
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 46 ASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSF 105
A+ T LL L+ + FA +T DD AKTP F+GAL +
Sbjct: 286 AANSSTDQQIXTLERLLKTRAELARLVGRSSFAHMTLDDKMAKTPENVMNFLGALIGQTR 345
Query: 106 PSSPHTLK 113
P + LK
Sbjct: 346 PFARRALK 353
>sp|A2C7T5|CHLB_PROM3 Light-independent protochlorophyllide reductase subunit B
OS=Prochlorococcus marinus (strain MIT 9303) GN=chlB
PE=3 SV=1
Length = 536
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 75 NPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYAR 125
NP + TD S ++P WT E G P ++ +V N ++YAR
Sbjct: 470 NPSTQSNTDSSSEESPLWTPE-----GEAELAKIPFFVRGKVRRNTEKYAR 515
>sp|B0CRC2|PMIP_LACBS Mitochondrial intermediate peptidase OS=Laccaria bicolor (strain
S238N-H82 / ATCC MYA-4686) GN=OCT1 PE=3 SV=1
Length = 772
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 43 VTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGS 102
V A+ T + LL L+ + FA +T DD AKTP F+ AL
Sbjct: 296 VYLAANSSTPQQIEVLEKLLRTRAELARLVGRDSFAHMTLDDKMAKTPDNVWNFLDALMD 355
Query: 103 YSFP---SSPHTLKLR 115
++ P + HTL R
Sbjct: 356 HTKPFARRALHTLSER 371
>sp|A4T8J9|ATPFD_MYCGI ATP synthase subunit b-delta OS=Mycobacterium gilvum (strain
PYR-GCK) GN=atpFH PE=3 SV=1
Length = 445
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 44 TTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSY 103
+ A ++ T TT+ L +S T+N TDD +AKT R F G LGS
Sbjct: 189 SVADGADSDTLTTVADELSGVAKVLLSETTLNKHLAEPTDDSTAKTRLVERLFDGKLGSN 248
Query: 104 SF 105
S
Sbjct: 249 SL 250
>sp|A8N2T3|PMIP_COPC7 Mitochondrial intermediate peptidase OS=Coprinopsis cinerea (strain
Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=OCT1
PE=3 SV=2
Length = 776
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 46 ASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSF 105
A+ T + +LL L+ FA +T DD AKTP F+ AL ++
Sbjct: 303 AANSSTQEQIEVLEALLKKRAELAQLVGRESFAHMTLDDKMAKTPDNVTNFLDALIDHTR 362
Query: 106 PSSPHTLK 113
P + L+
Sbjct: 363 PFARSALR 370
>sp|Q54XK1|PRAFA_DICDI PRA1 family protein 1 OS=Dictyostelium discoideum GN=prafA PE=3
SV=1
Length = 235
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 89 TPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILF 134
T W R F+G+ Y P+ T R+ ENV + NY LF+ F
Sbjct: 100 TRDW-RSFVGSRQQYGLPNIKDTTS-RIKENVVYFQSNYLILFLCF 143
>sp|Q7VMW1|DNAA_HAEDU Chromosomal replication initiator protein DnaA OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=dnaA PE=3 SV=1
Length = 448
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 5 FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANA-------VTTASTKETTTATT- 56
FA+ L+L +P E+W++D EI+D A S N V T++ +A++
Sbjct: 36 FANEELTLYAQNPFVENWVKDKFLTEIIDLARFLSKNEQLKITIRVGNKPTEQNLSASST 95
Query: 57 ----ITHSLLHYLYTFISLLTVNPFAKLTTDDF 85
+T +H T ++ +LT D+F
Sbjct: 96 NKEELTQDTVHKFKTGLN-------GRLTFDNF 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.132 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,727,503
Number of Sequences: 539616
Number of extensions: 2155309
Number of successful extensions: 9075
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 8150
Number of HSP's gapped (non-prelim): 750
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)