Query 030832
Match_columns 171
No_of_seqs 19 out of 21
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 05:15:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03208 PRA1: PRA1 family pro 99.1 4.3E-11 9.2E-16 90.8 4.6 54 86-141 5-58 (153)
2 KOG3142 Prenylated rab accepto 97.2 0.00041 8.9E-09 57.9 3.8 50 90-141 38-88 (187)
3 COG5130 YIP3 Prenylated rab ac 88.2 0.63 1.4E-05 38.9 3.7 48 93-141 32-80 (169)
4 COG5144 TFB2 RNA polymerase II 58.9 3 6.6E-05 39.1 -0.1 27 1-31 48-74 (447)
5 PF14664 RICTOR_N: Rapamycin-i 45.2 19 0.00041 32.4 2.7 67 83-149 266-346 (371)
6 PF03374 ANT: Phage antirepres 37.5 19 0.0004 25.9 1.2 20 12-31 34-53 (111)
7 PF05529 Bap31: B-cell recepto 36.7 36 0.00079 27.1 2.8 36 112-147 89-125 (192)
8 KOG3471 RNA polymerase II tran 30.6 17 0.00037 34.7 0.1 30 1-34 55-84 (465)
9 PF05803 Chordopox_L2: Chordop 30.6 40 0.00087 25.6 2.0 23 123-145 62-84 (87)
10 PF10489 RFPL3_antisense: Ret 29.9 21 0.00045 28.8 0.4 35 83-124 10-44 (124)
11 PF10092 DUF2330: Uncharacteri 29.3 29 0.00062 31.7 1.2 12 17-28 139-150 (348)
12 TIGR02366 DHAK_reg probable di 27.2 20 0.00043 26.8 -0.1 25 65-89 9-33 (176)
13 PF06387 Calcyon: D1 dopamine 26.5 44 0.00096 28.7 1.8 26 130-155 90-119 (186)
14 PF15178 TOM_sub5: Mitochondri 25.9 90 0.0019 22.0 2.9 27 108-134 12-38 (51)
15 PF08260 Kinin: Insect kinin p 24.9 17 0.00036 17.3 -0.6 7 16-22 1-7 (8)
16 PF11639 HapK: REDY-like prote 24.8 27 0.00059 27.4 0.3 17 13-29 13-29 (104)
17 COG3645 Uncharacterized phage- 24.4 39 0.00085 27.6 1.1 21 12-32 57-77 (135)
18 TIGR02742 TrbC_Ftype type-F co 24.4 40 0.00087 26.6 1.1 17 10-26 5-21 (130)
19 PF09673 TrbC_Ftype: Type-F co 24.2 41 0.0009 25.3 1.1 17 10-26 4-20 (113)
20 PF10905 DUF2695: Protein of u 24.0 48 0.001 23.0 1.3 16 13-28 29-44 (53)
21 KOG4050 Glutamate transporter 23.8 92 0.002 26.8 3.2 47 94-140 23-71 (188)
22 PF02791 DDT: DDT domain; Int 23.1 53 0.0012 22.1 1.4 26 58-86 7-32 (61)
23 PF09921 DUF2153: Uncharacteri 22.5 41 0.00088 27.3 0.9 9 17-25 47-55 (126)
24 PF06934 CTI: Fatty acid cis/t 22.3 98 0.0021 31.1 3.5 64 8-86 3-67 (694)
25 PRK10699 phosphatidylglyceroph 21.9 37 0.00081 29.4 0.6 26 87-112 141-166 (244)
26 PF04530 Viral_Beta_CD: Viral 21.4 1.1E+02 0.0024 24.7 3.1 31 113-143 30-70 (122)
27 PF14984 CD24: CD24 protein 21.3 1.1E+02 0.0023 21.6 2.6 33 42-74 18-50 (51)
28 PF05777 Acp26Ab: Drosophila a 21.1 72 0.0016 24.6 1.9 19 126-144 2-20 (90)
29 TIGR03162 ribazole_cobC alpha- 20.6 39 0.00084 25.4 0.4 48 79-127 86-135 (177)
No 1
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=99.14 E-value=4.3e-11 Score=90.78 Aligned_cols=54 Identities=31% Similarity=0.559 Sum_probs=50.1
Q ss_pred CCCCCCccceeeccCccccCCCChhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHhh
Q 030832 86 SAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYI 141 (171)
Q Consensus 86 ~~~tpsWtreF~g~~~SYSfPss~~QarlRV~ENvkRYarNYa~L~ilfFAc~LY~ 141 (171)
..+..|| +||+ +.++|++|++..|++.|+.+|+.+|..||+.+++++++++|+.
T Consensus 5 ~~~~Rpw-~eF~-~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~ 58 (153)
T PF03208_consen 5 LSPLRPW-REFF-DTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLT 58 (153)
T ss_pred cCCCCCH-HHHh-CccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899 9999 8899999999999999999999999999999999999988876
No 2
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.00041 Score=57.91 Aligned_cols=50 Identities=26% Similarity=0.487 Sum_probs=42.8
Q ss_pred CCccceeeccCccccCCCChhhhhhhhhhhHHHHhhhhHHHH-HHHHHHHHhh
Q 030832 90 PSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLF-ILFFACSLYI 141 (171)
Q Consensus 90 psWtreF~g~~~SYSfPss~~QarlRV~ENvkRYarNYa~L~-ilfFAc~LY~ 141 (171)
.|| +||+- ..+-|.|++..+|..||--|+.+|--||+.++ +++|.+.+|+
T Consensus 38 RpW-~ef~d-~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~ 88 (187)
T KOG3142|consen 38 RPW-SEFFD-RSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITH 88 (187)
T ss_pred CCH-HHHHc-ccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 349 99984 46789999999999999999999999999876 4567777887
No 3
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=88.23 E-value=0.63 Score=38.95 Aligned_cols=48 Identities=31% Similarity=0.526 Sum_probs=36.9
Q ss_pred cceeeccCccccCCCChhhhhhhhhhhHHHHhhhhHHHHHH-HHHHHHhh
Q 030832 93 TREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFIL-FFACSLYI 141 (171)
Q Consensus 93 treF~g~~~SYSfPss~~QarlRV~ENvkRYarNYa~L~il-fFAc~LY~ 141 (171)
+||||-. +--|-|....+|+.||--|.+|+--||.++..+ .---.||+
T Consensus 32 ~~eFfni-~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~n 80 (169)
T COG5130 32 TREFFNI-GRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYN 80 (169)
T ss_pred HHHHhcc-ccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5899964 346889999999999999999999999876533 23334454
No 4
>COG5144 TFB2 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription / DNA replication, recombination, and repair]
Probab=58.93 E-value=3 Score=39.07 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=22.3
Q ss_pred CCCcccCCCcccccCchHHHHHhhhcCchhh
Q 030832 1 MGKVFASNPLSLNVPDPAFESWLRDSGYLEI 31 (171)
Q Consensus 1 mgm~Fs~NPLSLSvPd~afe~WLRDsGyLEi 31 (171)
|.|.|++||.||+ +++.|++.++-+-.
T Consensus 48 m~mlfn~~~v~ll----d~d~wik~~~Ki~~ 74 (447)
T COG5144 48 MDMLFNSHSVSLL----DEDEWIKETLKILL 74 (447)
T ss_pred HHHHcCCCCcchh----hHHHHHhhhhHHHH
Confidence 7899999998775 89999999886543
No 5
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=45.23 E-value=19 Score=32.38 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=39.8
Q ss_pred cccCCCCCCccceeeccCccccCCCChhhhhhh---------hh---hhHHHHhhhhHHHHHHHHHH--HHhhhcccccc
Q 030832 83 DDFSAKTPSWTREFIGALGSYSFPSSPHTLKLR---------VH---ENVKRYARNYASLFILFFAC--SLYIGCSYASE 148 (171)
Q Consensus 83 dDl~~~tpsWtreF~g~~~SYSfPss~~QarlR---------V~---ENvkRYarNYa~L~ilfFAc--~LY~m~~~~~~ 148 (171)
|=|.-++|+|+.+|....+.-.+.+-..+++++ .. ++-.....||.+|.+.+|.= .+-.++++..+
T Consensus 266 dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~ 345 (371)
T PF14664_consen 266 DLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIES 345 (371)
T ss_pred HHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhc
Confidence 446778999999999755554444433333333 11 13456788999998887752 23334444444
Q ss_pred C
Q 030832 149 C 149 (171)
Q Consensus 149 ~ 149 (171)
.
T Consensus 346 ~ 346 (371)
T PF14664_consen 346 S 346 (371)
T ss_pred C
Confidence 3
No 6
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=37.48 E-value=19 Score=25.94 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=17.6
Q ss_pred cccCchHHHHHhhhcCchhh
Q 030832 12 LNVPDPAFESWLRDSGYLEI 31 (171)
Q Consensus 12 LSvPd~afe~WLRDsGyLEi 31 (171)
|.+++..|-+||||.|++-.
T Consensus 34 L~i~~~~l~~~Lr~~g~l~~ 53 (111)
T PF03374_consen 34 LGIGRNKLFQWLREKGWLYR 53 (111)
T ss_pred hCCCHHHHHHHHHhCCceEE
Confidence 57889999999999999865
No 7
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.66 E-value=36 Score=27.05 Aligned_cols=36 Identities=28% Similarity=0.220 Sum_probs=27.0
Q ss_pred hhhhhhhhHHHHhhh-hHHHHHHHHHHHHhhhccccc
Q 030832 112 LKLRVHENVKRYARN-YASLFILFFACSLYIGCSYAS 147 (171)
Q Consensus 112 arlRV~ENvkRYarN-Ya~L~ilfFAc~LY~m~~~~~ 147 (171)
...+++-...|.=|| |..-|++|+..++++..++..
T Consensus 89 ~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~ 125 (192)
T PF05529_consen 89 TEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIK 125 (192)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666777788 899999999999999776643
No 8
>KOG3471 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2 [Transcription; Replication, recombination and repair]
Probab=30.63 E-value=17 Score=34.73 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=24.9
Q ss_pred CCCcccCCCcccccCchHHHHHhhhcCchhhhhh
Q 030832 1 MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDT 34 (171)
Q Consensus 1 mgm~Fs~NPLSLSvPd~afe~WLRDsGyLEilD~ 34 (171)
|-|.|+++| ||..+++.|++-+|-.|+-++
T Consensus 55 m~MLf~~~p----VP~a~~~~Wv~~~~tk~q~ea 84 (465)
T KOG3471|consen 55 MQMLFKDQP----VPLADVDLWVKVEETKEQEEA 84 (465)
T ss_pred HHHHhcCCC----ccHHHHHHHhhhhhHHHHHHH
Confidence 568899987 688899999999888776655
No 9
>PF05803 Chordopox_L2: Chordopoxvirus L2 protein; InterPro: IPR008447 This family consists of several Chordopoxvirus L2 proteins.
Probab=30.57 E-value=40 Score=25.55 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=19.3
Q ss_pred HhhhhHHHHHHHHHHHHhhhccc
Q 030832 123 YARNYASLFILFFACSLYIGCSY 145 (171)
Q Consensus 123 YarNYa~L~ilfFAc~LY~m~~~ 145 (171)
-.|||..+.+++.+..+|+.+.|
T Consensus 62 v~RN~~ill~l~l~~~i~~l~~y 84 (87)
T PF05803_consen 62 VKRNYKILLILALSYAIYRLFNY 84 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999998887654
No 10
>PF10489 RFPL3_antisense: Ret finger protein-like 3 antisense; InterPro: IPR019524 This short transcript is purported to be the antisense protein of exon 2 of the ret-finger protein-like 3 (RFPL3) gene, however this was not confirmed. Since RFPL3 is expressed in testis, the suggestion is that it may have a role in the antisense regulation of the RFPL genes. RFPL transcripts encode proteins with tripartite structure of RING finger, coiled-coil, and B30-2 domains, which are characteristic of the RING-B30 family. Each of these domains is thought to mediate protein-protein interactions by promoting homo- or heterodimerisation [].
Probab=29.90 E-value=21 Score=28.76 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=23.9
Q ss_pred cccCCCCCCccceeeccCccccCCCChhhhhhhhhhhHHHHh
Q 030832 83 DDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYA 124 (171)
Q Consensus 83 dDl~~~tpsWtreF~g~~~SYSfPss~~QarlRV~ENvkRYa 124 (171)
+|-++|.+-|-++ +-||-- ...-+--++||++||+
T Consensus 10 gDskkpSKk~vkr-----~PyStT--kVTs~sTiNEilRRYa 44 (124)
T PF10489_consen 10 GDSKKPSKKHVKR-----EPYSTT--KVTSGSTINEILRRYA 44 (124)
T ss_pred ccccCchHHHhhc-----CCccee--eeccCcchhhhhhhhe
Confidence 6899999999433 445432 2233556899999997
No 11
>PF10092 DUF2330: Uncharacterized protein conserved in bacteria (DUF2330); InterPro: IPR019283 Members of this family of hypothetical bacterial proteins have no known function.
Probab=29.27 E-value=29 Score=31.68 Aligned_cols=12 Identities=50% Similarity=1.293 Sum_probs=11.0
Q ss_pred hHHHHHhhhcCc
Q 030832 17 PAFESWLRDSGY 28 (171)
Q Consensus 17 ~afe~WLRDsGy 28 (171)
.++++||+|+||
T Consensus 139 ~gL~~WL~~ngY 150 (348)
T PF10092_consen 139 DGLRTWLRDNGY 150 (348)
T ss_pred HHHHHHHHHcCC
Confidence 579999999999
No 12
>TIGR02366 DHAK_reg probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.
Probab=27.21 E-value=20 Score=26.80 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.4
Q ss_pred HHHHhhhhccCCcccccccccCCCC
Q 030832 65 LYTFISLLTVNPFAKLTTDDFSAKT 89 (171)
Q Consensus 65 ~~tl~slltlNPfakLT~dDl~~~t 89 (171)
..++..||.-.||.++|++|+.+..
T Consensus 9 ~~a~~~Ll~~k~~~~ITV~~I~~~A 33 (176)
T TIGR02366 9 AKAFKDLMEVQAFSKISVSDIMSTA 33 (176)
T ss_pred HHHHHHHHHHCCCccCCHHHHHHHh
Confidence 3567899999999999999998764
No 13
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=26.52 E-value=44 Score=28.67 Aligned_cols=26 Identities=31% Similarity=0.786 Sum_probs=19.4
Q ss_pred HHHHHHHHH----HhhhccccccCCCCcee
Q 030832 130 LFILFFACS----LYIGCSYASECSDGSIL 155 (171)
Q Consensus 130 L~ilfFAc~----LY~m~~~~~~~~~~~~~ 155 (171)
+...|.+|+ +|+..-|-..|.||-++
T Consensus 90 ~alAfl~Cv~~Lv~YKa~wYDqsCPdGFv~ 119 (186)
T PF06387_consen 90 FALAFLGCVVFLVMYKAIWYDQSCPDGFVL 119 (186)
T ss_pred HHHHHHHHHHHHHhheeeeecccCCCccee
Confidence 334445555 69999999999999875
No 14
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=25.94 E-value=90 Score=21.97 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.8
Q ss_pred ChhhhhhhhhhhHHHHhhhhHHHHHHH
Q 030832 108 SPHTLKLRVHENVKRYARNYASLFILF 134 (171)
Q Consensus 108 s~~QarlRV~ENvkRYarNYa~L~ilf 134 (171)
.+.|.|.||.|.|--=.||++..+.+.
T Consensus 12 DPeE~k~kmR~dvissvrnFliyVALl 38 (51)
T PF15178_consen 12 DPEEMKRKMREDVISSVRNFLIYVALL 38 (51)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998887764
No 15
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=24.92 E-value=17 Score=17.30 Aligned_cols=7 Identities=86% Similarity=1.853 Sum_probs=5.0
Q ss_pred chHHHHH
Q 030832 16 DPAFESW 22 (171)
Q Consensus 16 d~afe~W 22 (171)
+|+|.+|
T Consensus 1 ~pafnsw 7 (8)
T PF08260_consen 1 DPAFNSW 7 (8)
T ss_pred Ccccccc
Confidence 4677777
No 16
>PF11639 HapK: REDY-like protein HapK; InterPro: IPR021667 This family of proteins represents HapK, a protein of unknown function, with two homologues PigK and RedY. The monomer structure of the protein contains a four-stranded anti parallel beta-sheet, three alpha-helices and a short C-terminal tail which it uses for dimer formation []. The surface of HapK has a deep cavity with consists of a kinked helix and a beta-four strand. HapK could be involved in prodigiosin biosynthesis, specifically the binding of a bipyrrole intermediate such as HBM or MBM []. ; PDB: 2JDJ_B.
Probab=24.81 E-value=27 Score=27.44 Aligned_cols=17 Identities=41% Similarity=0.901 Sum_probs=14.3
Q ss_pred ccCchHHHHHhhhcCch
Q 030832 13 NVPDPAFESWLRDSGYL 29 (171)
Q Consensus 13 SvPd~afe~WLRDsGyL 29 (171)
.+...+||.|+|++-|-
T Consensus 13 gv~~~~fe~Wv~~tDy~ 29 (104)
T PF11639_consen 13 GVDPAAFERWVRETDYP 29 (104)
T ss_dssp GGGHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHhcchh
Confidence 46788999999998773
No 17
>COG3645 Uncharacterized phage-encoded protein [Function unknown]
Probab=24.43 E-value=39 Score=27.55 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=17.0
Q ss_pred cccCchHHHHHhhhcCchhhh
Q 030832 12 LNVPDPAFESWLRDSGYLEIL 32 (171)
Q Consensus 12 LSvPd~afe~WLRDsGyLEil 32 (171)
|.+.+..|-.||||+||+=..
T Consensus 57 lkige~~l~~~L~e~~~l~~~ 77 (135)
T COG3645 57 LKIGENRLFAWLRENKYLIKR 77 (135)
T ss_pred HccCHHHHHHHHHHCCEEEEc
Confidence 346778899999999998655
No 18
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=24.39 E-value=40 Score=26.59 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=15.6
Q ss_pred cccccCchHHHHHhhhc
Q 030832 10 LSLNVPDPAFESWLRDS 26 (171)
Q Consensus 10 LSLSvPd~afe~WLRDs 26 (171)
.|+|.|++.+.+|+||.
T Consensus 5 vS~SMP~~~Lk~l~~~a 21 (130)
T TIGR02742 5 VSFSMPEPLLKQLLDQA 21 (130)
T ss_pred EEcCCCHHHHHHHHHHH
Confidence 48999999999999994
No 19
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=24.18 E-value=41 Score=25.27 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=15.4
Q ss_pred cccccCchHHHHHhhhc
Q 030832 10 LSLNVPDPAFESWLRDS 26 (171)
Q Consensus 10 LSLSvPd~afe~WLRDs 26 (171)
.|+|+|++++.++++|.
T Consensus 4 vS~SMP~~~L~~l~~~a 20 (113)
T PF09673_consen 4 VSFSMPDASLRNLLKQA 20 (113)
T ss_pred EECCCCHHHHHHHHHHH
Confidence 48999999999999983
No 20
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=24.04 E-value=48 Score=22.98 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.4
Q ss_pred ccCchHHHHHhhhcCc
Q 030832 13 NVPDPAFESWLRDSGY 28 (171)
Q Consensus 13 SvPd~afe~WLRDsGy 28 (171)
++|++++..||+.+|-
T Consensus 29 ~~~~~~vl~~l~~nGg 44 (53)
T PF10905_consen 29 QLDWEDVLEWLRENGG 44 (53)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 5778999999999873
No 21
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=23.80 E-value=92 Score=26.80 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=34.1
Q ss_pred ceeeccCccccCCC--ChhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHh
Q 030832 94 REFIGALGSYSFPS--SPHTLKLRVHENVKRYARNYASLFILFFACSLY 140 (171)
Q Consensus 94 reF~g~~~SYSfPs--s~~QarlRV~ENvkRYarNYa~L~ilfFAc~LY 140 (171)
.+|+=.++-|.=|. .+..=--||-.|+--|--||...||..|+..-|
T Consensus 23 ddF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f 71 (188)
T KOG4050|consen 23 DDFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGF 71 (188)
T ss_pred HHhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444445555553 344445799999999999999999999887665
No 22
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=23.13 E-value=53 Score=22.10 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHhhhhccCCcccccccccC
Q 030832 58 THSLLHYLYTFISLLTVNPFAKLTTDDFS 86 (171)
Q Consensus 58 ~~s~~~~~~tl~slltlNPfakLT~dDl~ 86 (171)
...+..++.++..+|.+.|| |.|||-
T Consensus 7 ~L~v~~Fl~~F~~~L~L~~f---tlddf~ 32 (61)
T PF02791_consen 7 LLMVWEFLNTFGEVLGLSPF---TLDDFE 32 (61)
T ss_pred HHHHHHHHHHHHHHHcCCcC---CHHHHH
Confidence 44567788999999999999 888874
No 23
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.49 E-value=41 Score=27.30 Aligned_cols=9 Identities=56% Similarity=1.335 Sum_probs=8.2
Q ss_pred hHHHHHhhh
Q 030832 17 PAFESWLRD 25 (171)
Q Consensus 17 ~afe~WLRD 25 (171)
.|||+||.|
T Consensus 47 KaFd~WLqd 55 (126)
T PF09921_consen 47 KAFDQWLQD 55 (126)
T ss_pred HHHHHHHcC
Confidence 589999999
No 24
>PF06934 CTI: Fatty acid cis/trans isomerase (CTI); InterPro: IPR010706 This family consists of several fatty acid cis/trans isomerase proteins, which appear to be found exclusively in bacteria of the orders Vibrionales and Pseudomonadales. Cis/trans isomerase (CTI) catalyses the cis-trans isomerisation of esterified fatty acids in phospholipids, mainly cis-oleic acid (C(16:1,9)) and cis-vaccenic acid (C(18:1,11)), in response to solvents. The CTI protein has been shown to be involved in solvent resistance in Pseudomonas putida [].
Probab=22.27 E-value=98 Score=31.12 Aligned_cols=64 Identities=25% Similarity=0.461 Sum_probs=45.4
Q ss_pred CCcccccCchHHHHHhhhcCchhhhhhccccccccccccCcccccccccchhhhhhHHHHHhhhhccCCcccc-cccccC
Q 030832 8 NPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKL-TTDDFS 86 (171)
Q Consensus 8 NPLSLSvPd~afe~WLRDsGyLEilD~r~s~sa~~as~~s~~~~~~a~g~~~s~~~~~~tl~slltlNPfakL-T~dDl~ 86 (171)
+|=-|-+-+..-++| |+.|+--+||.|..+.++ +.-+|++.+.+.+-.---+.+-++| ...||+
T Consensus 3 ~PTRLf~DA~tt~~W-R~kGF~pVLner~qs~~~--------------n~~asl~~rmL~lk~~~plp~~~~Lp~~~d~s 67 (694)
T PF06934_consen 3 TPTRLFIDAQTTEEW-REKGFYPVLNERSQSPEA--------------NLQASLMARMLQLKQSHPLPPNAKLPEDFDFS 67 (694)
T ss_pred CcceeeeccCChHHH-HHCCCcccccccccCccc--------------CchHHHHHHHHHhhhhCCCCCCCcCCccceec
Confidence 566667777788899 999999999998854443 3456788888777666666666677 444443
No 25
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=21.94 E-value=37 Score=29.38 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=20.5
Q ss_pred CCCCCccceeeccCccccCCCChhhh
Q 030832 87 AKTPSWTREFIGALGSYSFPSSPHTL 112 (171)
Q Consensus 87 ~~tpsWtreF~g~~~SYSfPss~~Qa 112 (171)
.+.|+|-++---...+|||||+-++.
T Consensus 141 ~~~~~w~~~hw~~~~gySFPSGHa~~ 166 (244)
T PRK10699 141 SNIPQWLRSHWQKETGFAFPSGHTMF 166 (244)
T ss_pred ccCCHHHHhccCCCCCCCCChHHHHH
Confidence 36788877766677899999998874
No 26
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=21.37 E-value=1.1e+02 Score=24.65 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=19.2
Q ss_pred hhhhhhhHHH-------HhhhhHHHHHHHHHH---HHhhhc
Q 030832 113 KLRVHENVKR-------YARNYASLFILFFAC---SLYIGC 143 (171)
Q Consensus 113 rlRV~ENvkR-------YarNYa~L~ilfFAc---~LY~m~ 143 (171)
..-|.||++| +-.||..+++.+... +||---
T Consensus 30 ~~~ve~t~~~~~~~~sv~~~~y~l~~~~v~~L~~~~~y~~~ 70 (122)
T PF04530_consen 30 GSPVEMTARRETTFLSVLNDNYVLFVCAVCMLFSILVYLYS 70 (122)
T ss_pred CccHhHhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhee
Confidence 3344555555 788998776655444 777643
No 27
>PF14984 CD24: CD24 protein
Probab=21.27 E-value=1.1e+02 Score=21.64 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=19.5
Q ss_pred cccccCcccccccccchhhhhhHHHHHhhhhcc
Q 030832 42 AVTTASTKETTTATTITHSLLHYLYTFISLLTV 74 (171)
Q Consensus 42 ~as~~s~~~~~~a~g~~~s~~~~~~tl~slltl 74 (171)
++|..+.+++..++|.-++--+-+.-.+|||-|
T Consensus 18 aapnP~NaTTka~ggalQsTAsLlvvslSLLhl 50 (51)
T PF14984_consen 18 AAPNPTNATTKAGGGALQSTASLLVVSLSLLHL 50 (51)
T ss_pred cCCCCCcceecCCCcccchhhHHHHHHHHHhcc
Confidence 345555555555667766665555555677644
No 28
>PF05777 Acp26Ab: Drosophila accessory gland-specific peptide 26Ab (Acp26Ab); InterPro: IPR008392 This family consists of accessory gland-specific 26Ab peptides or male accessory gland secretory protein 355B from different Drosophila species. Drosophila males, like males of most other insects, transfer a group of specific proteins (Acp26Ab and Acp26Aa in Drosophila) to the females during mating. These proteins are produced primarily in the accessory gland and are likely to influence the female's reproduction [].; GO: 0007617 mating behavior, 0005576 extracellular region
Probab=21.06 E-value=72 Score=24.62 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHhhhcc
Q 030832 126 NYASLFILFFACSLYIGCS 144 (171)
Q Consensus 126 NYa~L~ilfFAc~LY~m~~ 144 (171)
||..+.-+|++++|+|.-.
T Consensus 2 nyf~~l~if~cicl~~~sd 20 (90)
T PF05777_consen 2 NYFVVLCIFSCICLWQFSD 20 (90)
T ss_pred cchhhHHHHHHHHHHHhcc
Confidence 8999999999999999643
No 29
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=20.61 E-value=39 Score=25.36 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=29.9
Q ss_pred cccccccCCCCCCccceeeccCccccCC--CChhhhhhhhhhhHHHHhhhh
Q 030832 79 KLTTDDFSAKTPSWTREFIGALGSYSFP--SSPHTLKLRVHENVKRYARNY 127 (171)
Q Consensus 79 kLT~dDl~~~tpsWtreF~g~~~SYSfP--ss~~QarlRV~ENvkRYarNY 127 (171)
.++.+++.++-|.| ..|.-....|.+| .|..|++.||..-+++..+++
T Consensus 86 g~~~~~~~~~~~~~-~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~ 135 (177)
T TIGR03162 86 GRSWDEIPEAYPEL-DAWAADWQHARPPGGESFADFYQRVSEFLEELLKAH 135 (177)
T ss_pred CCCHHHHHHhCHHH-HHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44555555543333 3333333345555 789999999999998887653
Done!