Query 030832
Match_columns 171
No_of_seqs 19 out of 21
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 07:55:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eap_A Lymphocyte cytosolic pr 80.4 0.84 2.9E-05 33.9 2.1 32 2-33 7-43 (90)
2 1vyk_A Oxygen-evolving enhance 27.9 38 0.0013 26.4 2.7 45 82-134 26-84 (149)
3 3fpn_B Geobacillus stearotherm 25.0 32 0.0011 24.5 1.7 27 4-30 9-39 (106)
4 2jdj_A HAPK, REDY-like protein 23.2 19 0.00066 26.9 0.3 16 13-28 13-28 (105)
5 1ci4_A Protein (barrier-TO-aut 18.5 36 0.0012 25.0 0.8 19 10-28 50-69 (89)
6 2ovg_A Phage lambda CRO; trans 16.5 40 0.0014 22.3 0.6 20 12-31 23-42 (66)
7 2l95_A Crammer, LP06209P; cyst 14.2 34 0.0012 22.9 -0.2 14 72-85 56-69 (80)
8 1rij_A E6APN1 peptide; Trp-CAG 13.5 62 0.0021 19.0 0.8 11 17-27 4-14 (26)
9 2hba_A BL17, 50S ribosomal pro 12.7 51 0.0018 21.6 0.3 7 122-128 24-30 (52)
10 3cxj_A Uncharacterized protein 11.6 72 0.0025 25.4 0.9 17 11-29 2-18 (165)
No 1
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.41 E-value=0.84 Score=33.89 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCcccCCCccccc---CchHHHHHhhhcCc--hhhhh
Q 030832 2 GKVFASNPLSLNV---PDPAFESWLRDSGY--LEILD 33 (171)
Q Consensus 2 gm~Fs~NPLSLSv---Pd~afe~WLRDsGy--LEilD 33 (171)
||+|..=|.-..| -..++..|||+.|| .|.+-
T Consensus 7 ~m~~~~~ps~seV~~Wsp~~VadWLkk~g~~~cd~lv 43 (90)
T 2eap_A 7 GMALRNVPFRSEVLGWDPDSLADYFKKLNYKDCEKAV 43 (90)
T ss_dssp CSSTTCCCCHHHHTTCCTTTHHHHHHHTTCHHHHHHH
T ss_pred cccccccccCccccccCHHHHHHHHHHcCCchHHHHH
Confidence 7887765554443 35789999999999 55553
No 2
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=27.93 E-value=38 Score=26.37 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=27.8
Q ss_pred ccccCCCCCCccceeeccCccccCCCChhhhhhhhhhhHHH--------------HhhhhHHHHHHH
Q 030832 82 TDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKR--------------YARNYASLFILF 134 (171)
Q Consensus 82 ~dDl~~~tpsWtreF~g~~~SYSfPss~~QarlRV~ENvkR--------------YarNYa~L~ilf 134 (171)
+-||.-|-+ |.|-|+. |-++.+|.-|+.|++++ |+|||+.+=.-+
T Consensus 26 ard~~l~~~-k~~f~~~-------~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~~~~~ 84 (149)
T 1vyk_A 26 ARDGTLPYT-KDRFYLQ-------PLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASY 84 (149)
T ss_dssp --------C-TTCCEEC-------CCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccCcccc-ccccccC-------CCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhHHH
Confidence 345544443 5454544 56899999999999887 889998876543
No 3
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=25.02 E-value=32 Score=24.52 Aligned_cols=27 Identities=26% Similarity=0.151 Sum_probs=20.1
Q ss_pred cccCCCcccccCc----hHHHHHhhhcCchh
Q 030832 4 VFASNPLSLNVPD----PAFESWLRDSGYLE 30 (171)
Q Consensus 4 ~Fs~NPLSLSvPd----~afe~WLRDsGyLE 30 (171)
.|..++|.|.+.+ .++.+||.+.||-.
T Consensus 9 ~~~~~~l~l~~G~~i~~~~l~~~L~~~GY~r 39 (106)
T 3fpn_B 9 EYRELVVSLRVGMEIERNALLRRLVDIQYDR 39 (106)
T ss_dssp ----CCEEEETTCBCCHHHHHHHHHHTTCEE
T ss_pred HHhhCCeEEECCCCcCHHHHHHHHHHcCCEE
Confidence 5788999998777 79999999999953
No 4
>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}
Probab=23.16 E-value=19 Score=26.95 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=14.0
Q ss_pred ccCchHHHHHhhhcCc
Q 030832 13 NVPDPAFESWLRDSGY 28 (171)
Q Consensus 13 SvPd~afe~WLRDsGy 28 (171)
.++..+||+|.|+..|
T Consensus 13 g~d~~aFe~w~~evD~ 28 (105)
T 2jdj_A 13 VAQADAFEFWVQNVDY 28 (105)
T ss_dssp GGGHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHhchh
Confidence 5678999999999877
No 5
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=18.52 E-value=36 Score=24.97 Aligned_cols=19 Identities=37% Similarity=0.795 Sum_probs=15.4
Q ss_pred cccccCchHHHHHhhhc-Cc
Q 030832 10 LSLNVPDPAFESWLRDS-GY 28 (171)
Q Consensus 10 LSLSvPd~afe~WLRDs-Gy 28 (171)
|.|.=+++.|..||+|. |.
T Consensus 50 L~l~kd~~~F~~WLk~~~ga 69 (89)
T 1ci4_A 50 LVLKKDEDLFREWLKDTCGA 69 (89)
T ss_dssp HHTTTCHHHHHHHHHHHHCC
T ss_pred HHcCCCHHHHHHHHHHHhCc
Confidence 45666899999999997 65
No 6
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=16.45 E-value=40 Score=22.28 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=16.7
Q ss_pred cccCchHHHHHhhhcCchhh
Q 030832 12 LNVPDPAFESWLRDSGYLEI 31 (171)
Q Consensus 12 LSvPd~afe~WLRDsGyLEi 31 (171)
|.|-++++.+|+|..+.+++
T Consensus 23 L~vtQ~AVS~~ir~~r~v~L 42 (66)
T 2ovg_A 23 LGVYPSSINQAIHAGRKIFL 42 (66)
T ss_dssp HTSCHHHHHHHHHHTCEEEE
T ss_pred hCCCHHHHHHHHHhCCCcee
Confidence 78999999999997666555
No 7
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}
Probab=14.19 E-value=34 Score=22.85 Aligned_cols=14 Identities=36% Similarity=0.748 Sum_probs=12.4
Q ss_pred hccCCccccccccc
Q 030832 72 LTVNPFAKLTTDDF 85 (171)
Q Consensus 72 ltlNPfakLT~dDl 85 (171)
+.+|+|+.||.+.|
T Consensus 56 lg~N~FaDlT~eEf 69 (80)
T 2l95_A 56 MGINHLADLTPEEF 69 (80)
T ss_dssp CCCCGGGTSSHHHH
T ss_pred ecCcccccCCHHHH
Confidence 46899999999988
No 8
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=13.46 E-value=62 Score=19.04 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=8.7
Q ss_pred hHHHHHhhhcC
Q 030832 17 PAFESWLRDSG 27 (171)
Q Consensus 17 ~afe~WLRDsG 27 (171)
+-+-+||+|-|
T Consensus 4 ellgqwlkdgg 14 (26)
T 1rij_A 4 ELLGQWLKDGG 14 (26)
T ss_dssp HHHHHHHHTTG
T ss_pred HHHHHHHHcCC
Confidence 45778999976
No 9
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=12.72 E-value=51 Score=21.62 Aligned_cols=7 Identities=43% Similarity=0.819 Sum_probs=5.6
Q ss_pred HHhhhhH
Q 030832 122 RYARNYA 128 (171)
Q Consensus 122 RYarNYa 128 (171)
-|||||.
T Consensus 24 GYaRN~L 30 (52)
T 2hba_A 24 GYANNFL 30 (52)
T ss_dssp HHHHHTT
T ss_pred Cceehhh
Confidence 4899985
No 10
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure initiative; 2.80A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=11.57 E-value=72 Score=25.35 Aligned_cols=17 Identities=35% Similarity=0.894 Sum_probs=13.9
Q ss_pred ccccCchHHHHHhhhcCch
Q 030832 11 SLNVPDPAFESWLRDSGYL 29 (171)
Q Consensus 11 SLSvPd~afe~WLRDsGyL 29 (171)
||+ +..+.+||+|.|..
T Consensus 2 ~~~--~~~I~~WL~eeG~~ 18 (165)
T 3cxj_A 2 SLS--QEMIKKWLDEEGFL 18 (165)
T ss_dssp -CH--HHHHHHHHHHTTCE
T ss_pred Ccc--HHHHHHHHHHcCce
Confidence 455 99999999999974
Done!