Query 030832
Match_columns 171
No_of_seqs 19 out of 21
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 07:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030832.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030832hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nzea_ a.24.18.1 (A:) Oxygen- 26.3 21 0.0015 24.4 2.7 30 104-133 3-46 (112)
2 d1bdya_ b.7.1.1 (A:) Domain fr 20.4 18 0.0013 23.9 1.4 26 73-98 23-61 (123)
3 d1x5wa1 g.37.1.1 (A:8-35) Zinc 17.2 25 0.0018 19.8 1.2 19 99-120 6-24 (28)
4 d1ngka_ a.1.1.1 (A:) Protozoan 16.4 42 0.003 21.7 2.5 15 11-25 75-89 (126)
5 d1j8ia_ d.9.1.1 (A:) Lymphotac 15.7 35 0.0025 22.7 1.9 20 20-41 53-72 (93)
6 d1q79a2 d.218.1.3 (A:19-214) P 13.4 41 0.003 24.8 2.0 23 7-29 5-34 (196)
7 d2gycf2 d.100.1.1 (F:1-58) Rib 12.2 22 0.0016 22.1 0.0 7 122-128 24-30 (58)
8 d2hbaa1 d.100.1.1 (A:1-52) Rib 11.7 27 0.002 21.4 0.3 8 121-128 23-30 (52)
9 d2iw1a1 c.87.1.8 (A:2-371) Lip 11.3 43 0.0032 22.8 1.4 15 113-127 340-354 (370)
10 d2j01i2 d.100.1.1 (I:1-55) Rib 11.3 28 0.0021 21.5 0.3 7 122-128 24-30 (55)
No 1
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=26.26 E-value=21 Score=24.38 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=22.6
Q ss_pred cCCCChhhhhhhhhhhHHH--------------HhhhhHHHHHH
Q 030832 104 SFPSSPHTLKLRVHENVKR--------------YARNYASLFIL 133 (171)
Q Consensus 104 SfPss~~QarlRV~ENvkR--------------YarNYa~L~il 133 (171)
=-|-++.+|.-|+.|+.+| |+|||+.+-.-
T Consensus 3 ~~~l~p~eaa~ri~~sa~~L~~l~~lI~k~~W~~v~~~Lr~~~~ 46 (112)
T d1nzea_ 3 LQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRAS 46 (112)
T ss_dssp CCCCCTTTHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3477888999999888665 78888877543
No 2
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.36 E-value=18 Score=23.94 Aligned_cols=26 Identities=23% Similarity=0.569 Sum_probs=18.1
Q ss_pred ccCCccccccccc-----------CCCC--CCccceeec
Q 030832 73 TVNPFAKLTTDDF-----------SAKT--PSWTREFIG 98 (171)
Q Consensus 73 tlNPfakLT~dDl-----------~~~t--psWtreF~g 98 (171)
+.|||.++.+++= +++| |.|.-+|--
T Consensus 23 ~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~ 61 (123)
T d1bdya_ 23 ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDA 61 (123)
T ss_dssp SCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEE
T ss_pred CCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEE
Confidence 4799999998663 1233 899777653
No 3
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.20 E-value=25 Score=19.76 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=13.8
Q ss_pred cCccccCCCChhhhhhhhhhhH
Q 030832 99 ALGSYSFPSSPHTLKLRVHENV 120 (171)
Q Consensus 99 ~~~SYSfPss~~QarlRV~ENv 120 (171)
..-|||-+ ..|.|||||-|
T Consensus 6 ~ecsyscs---skaalrvh~ri 24 (28)
T d1x5wa1 6 SECSYSCS---SKAALRIHERI 24 (28)
T ss_dssp SSSSCEES---SHHHHHHHHGG
T ss_pred cccccccC---cHHHHHHhhcc
Confidence 34577765 46889999976
No 4
>d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
Probab=16.42 E-value=42 Score=21.72 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=12.3
Q ss_pred ccccCchHHHHHhhh
Q 030832 11 SLNVPDPAFESWLRD 25 (171)
Q Consensus 11 SLSvPd~afe~WLRD 25 (171)
-+.+-+.+|+.||..
T Consensus 75 ~~~I~~~~fd~wl~~ 89 (126)
T d1ngka_ 75 PFRISLIERDAWLRC 89 (126)
T ss_dssp TSCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 357889999999975
No 5
>d1j8ia_ d.9.1.1 (A:) Lymphotactin {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.65 E-value=35 Score=22.66 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=14.0
Q ss_pred HHHhhhcCchhhhhhccccccc
Q 030832 20 ESWLRDSGYLEILDTATTTSAN 41 (171)
Q Consensus 20 e~WLRDsGyLEilD~r~s~sa~ 41 (171)
+.|+++ +++.||++......
T Consensus 53 ~~WVq~--~ik~Ld~k~~~~~~ 72 (93)
T d1j8ia_ 53 ATWVRD--VVRSMDRKSNTRNN 72 (93)
T ss_dssp CHHHHH--HHHHHHHHTTTTSC
T ss_pred hHHHHH--HHHHHHhhccCCCC
Confidence 579987 68888887644443
No 6
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.39 E-value=41 Score=24.82 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.9
Q ss_pred CCCcccccCchH-------HHHHhhhcCch
Q 030832 7 SNPLSLNVPDPA-------FESWLRDSGYL 29 (171)
Q Consensus 7 ~NPLSLSvPd~a-------fe~WLRDsGyL 29 (171)
.-|+|+..|.++ +++||++.|..
T Consensus 5 T~PiS~~~Pt~~D~~~s~~L~~~L~~~~~~ 34 (196)
T d1q79a2 5 TSPISLAAPKETDCLLTQKLVETLKPFGVF 34 (196)
T ss_dssp SCCSCCCCCCHHHHHHHHHHHHHHGGGTCS
T ss_pred CCCcccCCCChHHHHHHHHHHHHHHHcCCC
Confidence 469999999998 99999998873
No 7
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]}
Probab=12.15 E-value=22 Score=22.12 Aligned_cols=7 Identities=57% Similarity=1.028 Sum_probs=5.4
Q ss_pred HHhhhhH
Q 030832 122 RYARNYA 128 (171)
Q Consensus 122 RYarNYa 128 (171)
-|||||.
T Consensus 24 GyaRNyL 30 (58)
T d2gycf2 24 GYARNFL 30 (58)
T ss_dssp TTTTTTT
T ss_pred chhHHHh
Confidence 3889985
No 8
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.67 E-value=27 Score=21.36 Aligned_cols=8 Identities=38% Similarity=0.738 Sum_probs=6.1
Q ss_pred HHHhhhhH
Q 030832 121 KRYARNYA 128 (171)
Q Consensus 121 kRYarNYa 128 (171)
.-|||||.
T Consensus 23 ~GyarN~L 30 (52)
T d2hbaa1 23 DGYANNFL 30 (52)
T ss_dssp HHHHHHTT
T ss_pred ccchhHhh
Confidence 35999985
No 9
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=11.31 E-value=43 Score=22.79 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=11.0
Q ss_pred hhhhhhhHHHHhhhh
Q 030832 113 KLRVHENVKRYARNY 127 (171)
Q Consensus 113 rlRV~ENvkRYarNY 127 (171)
|.++.+|.|+|+++|
T Consensus 340 ~~~~~~~ar~~~~~~ 354 (370)
T d2iw1a1 340 RMAWAENARHYADTQ 354 (370)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHh
Confidence 556678888888765
No 10
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}
Probab=11.30 E-value=28 Score=21.54 Aligned_cols=7 Identities=71% Similarity=1.156 Sum_probs=5.7
Q ss_pred HHhhhhH
Q 030832 122 RYARNYA 128 (171)
Q Consensus 122 RYarNYa 128 (171)
-|||||.
T Consensus 24 GyaRN~L 30 (55)
T d2j01i2 24 GYARNYL 30 (55)
T ss_dssp HHHHHTT
T ss_pred hhHHHHh
Confidence 5999985
Done!