BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030833
(170 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225445170|ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Vitis vinifera]
Length = 206
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 148/166 (89%), Positives = 159/166 (95%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M+ S+EEI RLFRIR+TVMQML+DRGYFVGDFEINM+K QF++KFGENMKREDLVINKA
Sbjct: 1 MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
R DSSDQIYVFFP+EQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EIS K
Sbjct: 61 RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
FHLEVFQEAELLVNIKEHVLVPEHQVLT+EEKKTLL+RYTVKETQ+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQL 166
>gi|224119828|ref|XP_002331171.1| predicted protein [Populus trichocarpa]
gi|222873254|gb|EEF10385.1| predicted protein [Populus trichocarpa]
Length = 206
Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/167 (86%), Positives = 157/167 (94%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
MTL++EEIKRL RIR+TVMQML+DRGYFVGDFEI M++EQF +K+G NMKREDLVINK
Sbjct: 1 MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
RNDSSDQIYVFFP+E KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EIS K
Sbjct: 61 RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
FHLEVFQEAELLVNIKEHVLVPEHQVL+NEEKKTLL+RYTVKETQ+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLP 167
>gi|351723363|ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
gi|255625665|gb|ACU13177.1| unknown [Glycine max]
Length = 206
Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 134/167 (80%), Positives = 152/167 (91%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EE+ RL+RIR+TVMQMLRDRG+ VGDFEINMSK +F +K+GE+MKREDLVINK+
Sbjct: 1 MVLSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+++S DQIYVFFPDE KVGVKTMKTYTNRM SENV+RAILV Q NLTPFARTCI EIS+K
Sbjct: 61 KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
FHLEVFQEAELLVNIKEH LVPEHQVLT+ EKKTLL+RYTVKETQ+
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLP 167
>gi|449462431|ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 135/168 (80%), Positives = 153/168 (91%), Gaps = 1/168 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EEI RLFRIR+TV QMLRDRGYFVGDFEI+M++EQF K+GENMKRED+VINK+
Sbjct: 1 MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
RNDSSDQIYVFFP+E KVG+K +KTYT RMKSENVFRAILVVQQNLTPFAR C+ E ++K
Sbjct: 61 RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
Query: 121 -FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
FHLEVFQEAELLVNIK+HVLVPEHQ+L NEEKKTLL+RYTVKETQ+
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLP 168
>gi|15228724|ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana]
gi|3372233|gb|AAC28253.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|9293866|dbj|BAB01769.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
Length = 205
Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 133/165 (80%), Positives = 152/165 (92%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
L++EE+KRL+RI++T+MQMLRDRGYF+ D E+ M+K+QFI K G+NMKREDLV KA RN
Sbjct: 2 LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D+SDQ+Y+FFPDE KVGVKTMK YTNRMKSENVFRAILVVQQNLTPFARTCI EIS+KFH
Sbjct: 62 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFH 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LEVFQEAE+LVNIKEHVLVPEHQVLT EEKKTLL+RYTVKETQ+
Sbjct: 122 LEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLP 166
>gi|351722355|ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
gi|255627545|gb|ACU14117.1| unknown [Glycine max]
Length = 206
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/167 (80%), Positives = 151/167 (90%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EEI RL+RIR+TVMQMLRDR + VGDFEINMSK +F +K+GE+MKREDLVINK+
Sbjct: 1 MVLSEEEIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+++S DQIYVFFPDE KVGVKTMKTYTNRM SENV+RAILV Q NLTPFARTCI EIS+K
Sbjct: 61 KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
FHLEVFQEAELLVNIKEH LVPEHQVLT+ EKKTLL+RYTVKETQ+
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLP 167
>gi|297835232|ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
Length = 205
Score = 279 bits (713), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 131/165 (79%), Positives = 151/165 (91%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
L++EEIKRL+RI++T+MQML+DRGYF+ D E+ M+K+QFI K G+NMKREDLV K RN
Sbjct: 2 LTEEEIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKVKRN 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D+SDQ+Y+FFPDE KVGVKTMK YTNRMKSENV+RAILVVQQNLTPFARTCI EIS+KFH
Sbjct: 62 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFH 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LEVFQEAE+LVNIKEHVLVPEHQVLT EEKKTLL+RYTVKETQ+
Sbjct: 122 LEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLP 166
>gi|297738790|emb|CBI28035.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 133/147 (90%), Positives = 141/147 (95%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGV 80
ML+DRGYFVGDFEINM+K QF++KFGENMKREDLVINKA R DSSDQIYVFFP+EQKVGV
Sbjct: 1 MLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKRTDSSDQIYVFFPEEQKVGV 60
Query: 81 KTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVL 140
KTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EIS KFHLEVFQEAELLVNIKEHVL
Sbjct: 61 KTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVL 120
Query: 141 VPEHQVLTNEEKKTLLKRYTVKETQVS 167
VPEHQVLT+EEKKTLL+RYTVKETQ+
Sbjct: 121 VPEHQVLTSEEKKTLLERYTVKETQLP 147
>gi|449502080|ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 208
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/169 (78%), Positives = 153/169 (90%), Gaps = 2/169 (1%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EEI RLFRIR+TV QMLRDRGYFVGDFEI+M++EQF K+GENMKRED+VINK+
Sbjct: 1 MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
Query: 61 RNDSSDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
RNDSSDQ+Y+ FFP+E KVG+K +KTYT RMKSENVFRAILVVQQNLTPFAR C+ E ++
Sbjct: 61 RNDSSDQVYICFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 120
Query: 120 K-FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K FHLEVFQEAELLVNIK+HVLVPEHQ+L NEEKKTLL+RYTVKETQ+
Sbjct: 121 KSFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLP 169
>gi|255546411|ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 225
Score = 274 bits (700), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 137/186 (73%), Positives = 155/186 (83%), Gaps = 19/186 (10%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
MTLS++EIKRLFRIRRTVMQML+DR Y V D EIN++K QF +K+G+NMKREDLVI+K+
Sbjct: 1 MTLSEDEIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHKSK 60
Query: 61 RNDSSD-------------------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
R+ S QIYVFFP+EQKVGVKTMKTYTNRMKSENVFRAILV
Sbjct: 61 RDGSDSFYPTKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILV 120
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
VQQ+LTPFARTCI EI++KFHLEVFQE+ELLVNIKEHVLVPEHQVLTNEEKKTLL+RYTV
Sbjct: 121 VQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLERYTV 180
Query: 162 KETQVS 167
KETQ+
Sbjct: 181 KETQLP 186
>gi|357480733|ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355511987|gb|AES93610.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 410
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 127/166 (76%), Positives = 146/166 (87%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M S+EEI RL+RIR+TVMQML+DR Y VGDFE+NMSK F K+GENMKREDLVINK
Sbjct: 205 MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTK 264
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
++ SDQIYVFFP+E KVGVKTMKTYTNRM SENV+RAILV Q +LTPFA+TC+ EI++K
Sbjct: 265 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASK 324
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
FHLEVFQEAELLVNIKEHVLVPEHQ+L + EKKTLL+RYTVKETQ+
Sbjct: 325 FHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQL 370
>gi|388506474|gb|AFK41303.1| unknown [Medicago truncatula]
Length = 206
Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 127/167 (76%), Positives = 146/167 (87%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M S+EEI RL+RIR+TVMQML+DR Y VGDFE+NMSK F K+GENMKREDLVINK
Sbjct: 1 MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
++ SDQIYVFFP+E KVGVKTMKTYTNRM SENV+RAILV Q +LTPFA+TC+ EI++K
Sbjct: 61 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASK 120
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
FHLEVFQEAELLVNIKEHVLVPEHQ+L + EKKTLL+RYTVKETQ+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLP 167
>gi|388499936|gb|AFK38034.1| unknown [Lotus japonicus]
Length = 206
Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 127/167 (76%), Positives = 144/167 (86%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M L++E+I +L RIR+TVMQMLRDR Y VGDFEINMS+ +F K+G+NMKREDL INK
Sbjct: 1 MALTEEDITKLHRIRKTVMQMLRDRNYLVGDFEINMSRHEFKTKYGDNMKREDLTINKTK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
++ SDQIYVFFPDE KVGVKTMKTYTNRM SENVFRAILV Q NLTPFA+TCI E+S+K
Sbjct: 61 KDGPSDQIYVFFPDEPKVGVKTMKTYTNRMNSENVFRAILVCQSNLTPFAKTCISEMSSK 120
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F LEVFQEAELLVNIKEHVLVPEHQ+L EKKTLL+RYTVKETQ+
Sbjct: 121 FQLEVFQEAELLVNIKEHVLVPEHQILNETEKKTLLERYTVKETQLP 167
>gi|449450868|ref|XP_004143184.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524595|ref|XP_004169307.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 126/168 (75%), Positives = 145/168 (86%), Gaps = 1/168 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M +EEI +LFR+R+TV+QML+DRGYFVGDFE++MSK QF KFGENMKREDLVINK+
Sbjct: 1 MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI-SA 119
RN+SSDQIYVFFP+E KVG+K ++TY RMKSENVFRAI VVQ NLTPFAR I E+ S+
Sbjct: 61 RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K HLEVFQE ELLVNIKEHVL+PEHQ LT+EEKKTLL RYTVKETQ+
Sbjct: 121 KLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLP 168
>gi|116785870|gb|ABK23892.1| unknown [Picea sitchensis]
Length = 191
Score = 255 bits (651), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 124/163 (76%), Positives = 140/163 (85%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
DE+ +LFRIRRTV+QML DR Y VGDFEIN +KEQF+ KFGE+ K+EDLVINKA RN
Sbjct: 4 DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
S+QI+VFFP+E KVGVK++KTY RMKSE VFRAILVVQQ LTPFAR +QE S KFHLE
Sbjct: 64 SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQQALTPFARQSVQEFSGKFHLE 123
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
VFQEAELLVNIKEHVLVPE Q+LT EEKKTLL+RYT+KETQV
Sbjct: 124 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTLKETQVC 166
>gi|449455411|ref|XP_004145446.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449487698|ref|XP_004157756.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 205
Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/167 (72%), Positives = 149/167 (89%), Gaps = 1/167 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EEI +LFR R+TV+QMLRDRG+ VGDFE+ MS+EQF ++GE MK+EDLVINK++
Sbjct: 1 MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
RN+SSDQIYVFFP+E KV VKT++TY NRMKS+NVFRAILVVQ+ L+ FAR+ I E + K
Sbjct: 61 RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE-APK 119
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
FHLEVFQEAELLVNIK+HVL+PEHQ+LTNE+KKTLL+RYTVK+TQ+
Sbjct: 120 FHLEVFQEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLP 166
>gi|192910670|gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Elaeis
guineensis]
Length = 204
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/165 (72%), Positives = 141/165 (85%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+S+++I RLFRIRRTVMQMLRDRGY V D EINM+K QF+ KFGE +KREDLVINKA +N
Sbjct: 1 MSEDDISRLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKN 60
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D +DQIYVFFP++ KVGVK +K Y RMK+ENV R ILVVQQ LTPFAR + E+S K+
Sbjct: 61 DPADQIYVFFPNDAKVGVKQIKQYVERMKAENVTRGILVVQQALTPFARQSLAEVSQKYM 120
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LEVFQ+ ELLVNIKEHVLVPEHQVLT+EEKKTLL+RYT+KETQ+
Sbjct: 121 LEVFQDTELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLP 165
>gi|302795809|ref|XP_002979667.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
gi|302807361|ref|XP_002985375.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300146838|gb|EFJ13505.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300152427|gb|EFJ19069.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
Length = 206
Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 113/167 (67%), Positives = 140/167 (83%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M D+ RL+RIRRT+MQMLRDR Y V D+E++++KEQF KFG+ KR+DLVI+KA
Sbjct: 1 MAQLDDSTNRLYRIRRTIMQMLRDRDYLVADYEVSLTKEQFRDKFGDEPKRDDLVISKAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
R+D SDQI+VFFP+E KVGVKT+KTY RMKSE VFRAI+VVQ +LTPFA+ C+ E++ K
Sbjct: 61 RSDQSDQIFVFFPEEPKVGVKTIKTYAERMKSELVFRAIMVVQTSLTPFAKQCLSEMAPK 120
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ +EVFQEAELLVNIKEH LVPEHQVL+ EEKKTLL+RYTVKE+Q+
Sbjct: 121 YQIEVFQEAELLVNIKEHTLVPEHQVLSAEEKKTLLERYTVKESQLP 167
>gi|168011548|ref|XP_001758465.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690500|gb|EDQ76867.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 241 bits (615), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 113/163 (69%), Positives = 141/163 (86%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
DE+ RL+RIR+TVM+MLRDR Y V D+E+ +SKEQF K+G+ KREDLVI K R+++
Sbjct: 7 DEQSARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNN 66
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
++ I+VFFP+E KVGVKT+KTY +RMK+ENV RAILVVQQNLTPFAR C+ E+++K+HLE
Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMASKYHLE 126
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
VFQEAELLVNIKEHVLVP H+VLT +EKKTLL+RYTVKETQ+
Sbjct: 127 VFQEAELLVNIKEHVLVPLHEVLTPDEKKTLLERYTVKETQLP 169
>gi|168003716|ref|XP_001754558.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694179|gb|EDQ80528.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 110/163 (67%), Positives = 140/163 (85%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
DE+ RL+RIR+TVM+MLRDR Y V +FE+N +KE+F K+G+ KREDLVI K R+++
Sbjct: 7 DEQCARLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNN 66
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
++ I+VFFP+E KVGVKT+KTY +RMK+ENV RAILVVQQNLTPFAR C+ E+S+K+H+E
Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMSSKYHVE 126
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
VFQEAELLVNIK+HVLVP+H+VL EEK TLL+RYTVKETQ+
Sbjct: 127 VFQEAELLVNIKDHVLVPQHEVLNAEEKITLLQRYTVKETQLP 169
>gi|357482711|ref|XP_003611642.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512977|gb|AES94600.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 331
Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 138/164 (84%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
S++EI +L+RIR+TVM+MLRDR Y VGDFE+NMSKE+F K+GE+M REDLVINKA ++
Sbjct: 128 FSEDEISKLYRIRKTVMEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMNREDLVINKAKKD 187
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ SDQIYVFFP+++KVGV T +TYT RM SENV+RAI+V Q +LT A I + +KFH
Sbjct: 188 NPSDQIYVFFPEDEKVGVHTFRTYTKRMNSENVYRAIIVCQTSLTNMAWNSISQFDSKFH 247
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LEVFQEAELLVN++ H LVPEHQ+LT+ EKKT+L+RYTVKETQ+
Sbjct: 248 LEVFQEAELLVNVRYHKLVPEHQLLTDNEKKTVLERYTVKETQL 291
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 100/127 (78%), Gaps = 1/127 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M S++EI +L+RIR+ VM+MLRDR Y VGDFE+ MSK++F +GEN+KREDLVI KA
Sbjct: 1 MVFSEDEISKLYRIRKKVMEMLRDRNYLVGDFEVCMSKQEFKETYGENLKREDLVIKKAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+++ SDQIYVFFP+ KV V T++TYTNRM S+NV+RAI+V Q +LT AR EI++K
Sbjct: 61 KDNPSDQIYVFFPENDKVDVHTLRTYTNRMSSDNVYRAIVVCQTSLTKAARD-FSEIASK 119
Query: 121 FHLEVFQ 127
FHLEVF
Sbjct: 120 FHLEVFH 126
>gi|357482707|ref|XP_003611640.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512975|gb|AES94598.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 229
Score = 231 bits (589), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 138/165 (83%), Gaps = 3/165 (1%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M S++EI +L+RIR+TVM+MLRDR Y VGDFE+NMSKE+F K+GE+M REDLVINKA
Sbjct: 1 MVFSEDEISKLYRIRKTVMEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMNREDLVINKAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+++ SDQIYVFFP+++KVGV T +T T RM SENV+RAI+V Q +LT A + EI +K
Sbjct: 61 KDNPSDQIYVFFPEDEKVGVHTFRTCTKRMNSENVYRAIIVCQTSLTNMA---LSEIDSK 117
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQ 165
FHLEVFQEAELLVN++ H LVPEHQVLT+ EKKTLL+RYTVKETQ
Sbjct: 118 FHLEVFQEAELLVNVRYHELVPEHQVLTDNEKKTLLERYTVKETQ 162
>gi|148910132|gb|ABR18148.1| unknown [Picea sitchensis]
Length = 194
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/163 (71%), Positives = 132/163 (80%), Gaps = 11/163 (6%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
DE+ +LFRIRRTV+QML DR Y VGDFEIN +KEQF+ KFGE+ K+EDLVINKA RN
Sbjct: 4 DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
S+QI+VFFP+E KVGVK++KTY RMKSE VFRAILVVQ QE S KFHLE
Sbjct: 64 SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQ-----------QEFSGKFHLE 112
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
VFQEAELLVNIKEHVLVPE Q+LT EEKKTLL+RYT+KETQ+
Sbjct: 113 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTLKETQLP 155
>gi|115440569|ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|55296830|dbj|BAD68174.1| putative DNA-directed RNA polymerase II 23K chain [Oryza sativa
Japonica Group]
gi|113534095|dbj|BAF06478.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|215737136|dbj|BAG96065.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765546|dbj|BAG87243.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189238|gb|EEC71665.1| hypothetical protein OsI_04128 [Oryza sativa Indica Group]
Length = 210
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/160 (67%), Positives = 132/160 (82%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
+ RL RIRRTVMQMLRDRGY V + E+ M + F+ K+GE+ REDL+INK +ND SDQ
Sbjct: 12 VGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQ 71
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
IYVFFP++ KVG+K +K Y MK+ENV RA+LV+QQNLTPFAR+ +QE+ K HLE+FQ
Sbjct: 72 IYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQ 131
Query: 128 EAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
EAELL+NIKEHVLVPEHQVL NEEKKTLL+RYT+KETQ+
Sbjct: 132 EAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLP 171
>gi|413952168|gb|AFW84817.1| hypothetical protein ZEAMMB73_052663 [Zea mays]
Length = 238
Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/159 (67%), Positives = 131/159 (82%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
+ RL+RIRRTVMQMLRDRGY V D E+ S+ F+ KFGE+ REDL+INK +ND SDQ
Sbjct: 12 VGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQ 71
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
IYVFFP++ KVG+K +K Y M ENV RA+LV+QQNLTPFA++ + E+ K HLE+FQ
Sbjct: 72 IYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQ 131
Query: 128 EAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
EAE+L+NIKEHVLVPEHQVLTNEEKKTLL+RYT+KETQV
Sbjct: 132 EAEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQV 170
>gi|222619416|gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japonica Group]
Length = 210
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/160 (66%), Positives = 131/160 (81%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
+ RL RIRRTVMQMLRDRGY V + E+ M + F+ K+GE+ REDL+INK +ND SDQ
Sbjct: 12 VGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQ 71
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
IYVFFP++ KVG+K +K Y MK+ENV RA+LV+QQNLTPFAR+ +QE+ K HLE+FQ
Sbjct: 72 IYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQ 131
Query: 128 EAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
EAELL+NIKEHVLVPEHQVL N EKKTLL+RYT+KETQ+
Sbjct: 132 EAELLINIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLP 171
>gi|226530454|ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea mays]
gi|226533456|ref|NP_001152590.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|194703030|gb|ACF85599.1| unknown [Zea mays]
gi|195657875|gb|ACG48405.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|413952167|gb|AFW84816.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 210
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/166 (65%), Positives = 135/166 (81%), Gaps = 1/166 (0%)
Query: 3 LSDEE-IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR 61
++DE + RL+RIRRTVMQMLRDRGY V D E+ S+ F+ KFGE+ REDL+INK +
Sbjct: 6 VTDEATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKK 65
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
ND SDQIYVFFP++ KVG+K +K Y M ENV RA+LV+QQNLTPFA++ + E+ K
Sbjct: 66 NDPSDQIYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKI 125
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
HLE+FQEAE+L+NIKEHVLVPEHQVLTNEEKKTLL+RYT+KETQ+
Sbjct: 126 HLEIFQEAEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLP 171
>gi|346470667|gb|AEO35178.1| hypothetical protein [Amblyomma maculatum]
Length = 205
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 137/166 (82%), Gaps = 1/166 (0%)
Query: 3 LSDEE-IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR 61
++DE+ I RLFRIRRTVM+MLRDR Y V D+E+NM+K F+ KFGE +KR+DL INK +
Sbjct: 1 MADEQQISRLFRIRRTVMEMLRDRNYLVVDYELNMTKLDFLHKFGEGVKRDDLTINKYKK 60
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
D SDQIYVFFP++ KVG+K +K MK+ENV R+ILVVQQNLTPFA+ + E++ KF
Sbjct: 61 GDPSDQIYVFFPNDDKVGMKHIKKCVELMKTENVTRSILVVQQNLTPFAKAHLLELTPKF 120
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LEVF EAELLVNIK+HVL+PEHQVLTNEEKKTLL+RYT+KETQ+
Sbjct: 121 ILEVFLEAELLVNIKKHVLIPEHQVLTNEEKKTLLERYTLKETQLP 166
>gi|215713497|dbj|BAG94634.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 167
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/163 (63%), Positives = 134/163 (82%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+EE RLFRIRRTVMQMLRDRGY V + +I++ + F+A+FG+ + R+ LV ++ +++
Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
+DQIYVFFP + K GVKT+++Y RMK E+VF ILVVQQ L+ FAR+ +QE+S KFHL
Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
EVFQEAELLVNIK+H LVPEH++LT E+KKTLL+RYTVKETQV
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQV 165
>gi|125548794|gb|EAY94616.1| hypothetical protein OsI_16393 [Oryza sativa Indica Group]
gi|125590811|gb|EAZ31161.1| hypothetical protein OsJ_15260 [Oryza sativa Japonica Group]
Length = 217
Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 102/163 (62%), Positives = 134/163 (82%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+EE RLFRIRRTVMQMLRDRGY V + +I++ + F+A+FG+ + R+ LV ++ +++
Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
+DQIYVFFP + K GVKT+++Y RMK E+VF ILVVQQ L+ FAR+ +QE+S KFHL
Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
EVFQEAELLVNIK+H LVPEH++LT E+KKTLL+RYTVKETQ+
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQI 165
>gi|38344231|emb|CAD41325.2| OJ991113_30.8 [Oryza sativa Japonica Group]
Length = 205
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 102/164 (62%), Positives = 134/164 (81%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+EE RLFRIRRTVMQMLRDRGY V + +I++ + F+A+FG+ + R+ LV ++ +++
Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
+DQIYVFFP + K GVKT+++Y RMK E+VF ILVVQQ L+ FAR+ +QE+S KFHL
Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
EVFQEAELLVNIK+H LVPEH++LT E+KKTLL+RYTVKETQ+
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQLP 166
>gi|326492457|dbj|BAK02012.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326504136|dbj|BAK02854.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511589|dbj|BAJ91939.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/163 (63%), Positives = 130/163 (79%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
D + RL RIRRTVM MLRDRGY V + E++M++ F K+GE RED++INK +ND
Sbjct: 9 DVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDP 68
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
+DQIYVFFP+++KVG+K +K Y M +E V RAILVVQQNLTPFA++ +QE+ K HLE
Sbjct: 69 NDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLE 128
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
VFQ+AE+L+NIKEHVLVPEHQVL NEEKKTLL RYT+KETQ+
Sbjct: 129 VFQDAEMLINIKEHVLVPEHQVLANEEKKTLLARYTLKETQLP 171
>gi|212722800|ref|NP_001132429.1| hypothetical protein [Zea mays]
gi|194694360|gb|ACF81264.1| unknown [Zea mays]
gi|414586666|tpg|DAA37237.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 206
Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 104/167 (62%), Positives = 131/167 (78%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M D+EI RLFRIRRTV +MLRDRGY V D +I + + +FI ++G ++R++L N
Sbjct: 1 MASPDDEISRLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
N SDQIYVFFP+E K GVKT++ Y +MK+ENVF ILVVQQ L+ FAR+ +QE+S K
Sbjct: 61 LNGPSDQIYVFFPNEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQK 120
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+HLEVFQEAELLVNIK+HVLVPEH +LT E+KKTLL+RYTVKETQ+
Sbjct: 121 YHLEVFQEAELLVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQLP 167
>gi|357125497|ref|XP_003564430.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 210
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 102/167 (61%), Positives = 132/167 (79%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
+ D + RL RIR TVM MLRDRGY V + E+ M++ F K+GE+ REDL+INK
Sbjct: 5 LVTDDAGVGRLVRIRSTVMHMLRDRGYLVVEHELAMTRRDFERKYGESFHREDLLINKCK 64
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+ND +DQIYVFFP+++KVG+K +K Y M +E V RA++VVQQNLTPFA++ +QE+ K
Sbjct: 65 KNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAVVVVQQNLTPFAKSFLQELEPK 124
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
HLEVFQ+AE+L+NIKEHVLVPEHQVLTN+EKKTLL+RYT+KETQ+
Sbjct: 125 IHLEVFQDAEMLINIKEHVLVPEHQVLTNDEKKTLLERYTLKETQLP 171
>gi|414586665|tpg|DAA37236.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 203
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/167 (60%), Positives = 128/167 (76%), Gaps = 3/167 (1%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M D+EI RLFRIRRTV +MLRDRGY V D +I + + +FI ++G ++R++L N
Sbjct: 1 MASPDDEISRLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
N SDQIYVFFP+E K GVKT++ Y +MK+ENVF ILVVQQ L+ FAR+ +QE+S K
Sbjct: 61 LNGPSDQIYVFFPNEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQK 120
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+HLE EAELLVNIK+HVLVPEH +LT E+KKTLL+RYTVKETQ+
Sbjct: 121 YHLE---EAELLVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQLP 164
>gi|326503328|dbj|BAJ99289.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 130/168 (77%), Gaps = 1/168 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M ++ E RLFR+RRTVMQMLRDRGY V D +++++ +F+ ++G+ ++R+DLVIN+A
Sbjct: 1 MAATEGETSRLFRVRRTVMQMLRDRGYLVVDADVDLTMGEFVGRYGDPVRRDDLVINRAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA- 119
+++ +QIY+FFP+E K GVKT+K+Y +MK ENV+ ILVVQQ LT F+R + +S
Sbjct: 61 KDNPDEQIYIFFPNEPKPGVKTVKSYAEKMKQENVYNGILVVQQALTAFSRNLLLGLSQE 120
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K LEVFQE ELL+NIK H LVPEH +LT E+KKTLL++YTVKETQ+
Sbjct: 121 KLQLEVFQEGELLINIKNHDLVPEHVLLTKEQKKTLLEKYTVKETQLP 168
>gi|357164319|ref|XP_003580017.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 205
Score = 198 bits (504), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 127/164 (77%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+ + RLFRIRRTVM+MLRDRGY V D +I +S +FI ++G+ ++REDLVIN+ +++
Sbjct: 3 SEGQTSRLFRIRRTVMEMLRDRGYLVVDADIELSMREFIDRYGDPVRREDLVINRVKKDN 62
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
++QIYVFFP E K GVKT++ Y ++MK ENV I+V +Q L+ FAR +Q+ S F L
Sbjct: 63 PNEQIYVFFPSEAKPGVKTVRGYADKMKQENVTNGIIVAEQALSAFARNVLQDNSKSFFL 122
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
EVFQE ELLVNIK H LVPEH +LT+E+KKTLL++YTVKETQ+
Sbjct: 123 EVFQEGELLVNIKNHELVPEHVLLTHEQKKTLLEKYTVKETQLP 166
>gi|297830274|ref|XP_002883019.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
gi|297328859|gb|EFH59278.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
Length = 211
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/169 (58%), Positives = 129/169 (76%), Gaps = 4/169 (2%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M L+DEEIK+LF ++RT+MQML+DRGY + D EI M+ +FI K+GENMKR+ LV KA
Sbjct: 1 MALTDEEIKQLFLVQRTLMQMLKDRGYSIEDSEITMTLGEFIEKYGENMKRKALVTLKAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA- 119
+ND +D++Y+FFP++ KVGV MK Y NR+KSENVFRAIL V+Q++ F+R I A
Sbjct: 61 KNDDNDKLYIFFPNKAKVGVADMKKYINRLKSENVFRAIL-VKQDIKEFSRHAQLSIGAA 119
Query: 120 --KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
KF++EVFQE EL+VN+ HV VPEHQ LT EEK+ L+RYTVKE Q+
Sbjct: 120 YPKFNIEVFQEKELIVNVNHHVFVPEHQALTTEEKQQFLERYTVKENQL 168
>gi|326501686|dbj|BAK02632.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 92/168 (54%), Positives = 125/168 (74%), Gaps = 1/168 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M ++ E RLFR+RRTVMQMLRDRGY V D +++M+ +F+ ++G+ ++R+DLVIN+A
Sbjct: 1 MAEAEGETSRLFRVRRTVMQMLRDRGYLVVDADVDMTMGEFVGRYGDPVRRDDLVINRAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA- 119
+++ +QIYVFFP+E K G K +K+Y +M ENV ILVVQQ LT FAR + S
Sbjct: 61 KDNPDEQIYVFFPNEPKPGQKAVKSYVEKMTQENVRNGILVVQQALTSFARNNLLGNSPD 120
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K ++VFQE ELL+NIK H LVPEH +LT E+KKTLL++YTVKETQ+
Sbjct: 121 KLQVQVFQEKELLINIKNHDLVPEHVLLTKEQKKTLLEKYTVKETQLP 168
>gi|159479030|ref|XP_001697601.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158274211|gb|EDO99994.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 206
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 121/162 (74%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
+ + RL+R+RRT +QML DRGY V EI +K+QF +FGEN +++DL I ++D +
Sbjct: 2 DNLTRLWRVRRTCLQMLNDRGYLVSQEEIGTTKDQFRDRFGENPRKDDLTILVPRQDDPT 61
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+QI+VFFP+EQKVGVKT+K RMK E V RAI+V TPFA++ ++++ K+H+E
Sbjct: 62 EQIFVFFPEEQKVGVKTIKLLAERMKDEKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEH 121
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F E+ELLVNI EHVLVPEH++L+ +EK+TLL RY +KETQ+
Sbjct: 122 FLESELLVNITEHVLVPEHRILSPDEKRTLLDRYKIKETQLP 163
>gi|357497659|ref|XP_003619118.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355494133|gb|AES75336.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 205
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 122/166 (73%), Gaps = 1/166 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EE+ +L+RIRRTV QMLRDR Y V D E+NMSK++ AKFGENM R+DL I
Sbjct: 1 MGLSEEEVTKLYRIRRTVFQMLRDRNYRVLDSEVNMSKQELKAKFGENMNRKDLTIQTTN 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
++D SD+IYVFF D+ K+GV T+KT + + +E V+RAI+VVQ L AR+ + S +
Sbjct: 61 KDDPSDKIYVFFRDDAKLGVSTIKTIKDLILTEGVYRAIIVVQNELKSKARSELNLFS-E 119
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E F E ELLVN+ EHVLVPEHQVLTN EKK LL YTVKETQ+
Sbjct: 120 VRIEAFLEDELLVNVIEHVLVPEHQVLTNAEKKDLLSTYTVKETQL 165
>gi|255085448|ref|XP_002505155.1| predicted protein [Micromonas sp. RCC299]
gi|226520424|gb|ACO66413.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/163 (57%), Positives = 120/163 (73%), Gaps = 1/163 (0%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E+ RLFRIR+TV +ML RGY V E++ K+ F +FGE+ +R+ L + LR D +
Sbjct: 3 EKKTRLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDPT 62
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA-KFHLE 124
I+VFFPDE+KVGVKT+K Y RMK E V RAI+VVQQ+LTPFAR + E A KF++E
Sbjct: 63 QHIFVFFPDEEKVGVKTIKEYAKRMKDEQVNRAIIVVQQSLTPFARQSLLECQAQKFYIE 122
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
FQEAELLVNI +HVLVPEH +L++E+K+ LL RY VKETQ+
Sbjct: 123 QFQEAELLVNITDHVLVPEHILLSDEQKRVLLDRYKVKETQLP 165
>gi|384249623|gb|EIE23104.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 202
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 123/162 (75%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
+ + RL+RIR+T ++ML DRGY + + M+KE F +FG++ +++DL + ++D +
Sbjct: 2 DNMTRLYRIRKTCLEMLHDRGYLIAQDDRQMTKEGFKDRFGDDPRKDDLTVLAPKQDDPT 61
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+QI+VF+P+E KVGVKT+KT+ RM++E V RAI+V ++TPFA+ C+ E++ K+++EV
Sbjct: 62 EQIFVFYPEEDKVGVKTIKTFAERMRNEGVSRAIMVTMASMTPFAKQCLAEMAPKYYIEV 121
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F AELL+NI +HVLVPEH +LT EEK+TLL RY VK+TQ+
Sbjct: 122 FNAAELLINITQHVLVPEHHLLTPEEKRTLLDRYKVKDTQLP 163
>gi|308803436|ref|XP_003079031.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
gi|116057485|emb|CAL51912.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
Length = 1124
Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats.
Identities = 88/165 (53%), Positives = 120/165 (72%), Gaps = 1/165 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+S + RLFR+R+T+ +ML RGY V E+ + F +FGE KR+ L I ++
Sbjct: 920 MSSDRRNRLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRDSLTILAPRKD 979
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI-SAKF 121
D S+ I+VFFPDE+KVGVKT+K RMK ENVFRAI+VVQ +LTPFA+ + E + KF
Sbjct: 980 DPSENIFVFFPDEEKVGVKTIKDLAKRMKEENVFRAIIVVQASLTPFAKQSLLECQTQKF 1039
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++E FQE ELLVNI +HVLVPEH +L++E+K+TLL+RY VK+TQ+
Sbjct: 1040 YIEQFQETELLVNIVDHVLVPEHILLSDEQKRTLLERYKVKDTQL 1084
>gi|449019061|dbj|BAM82463.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 211
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/167 (55%), Positives = 121/167 (72%), Gaps = 7/167 (4%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFV----GDFEINMSKEQFIAKF-GENMKREDLVINKAL 60
+E +RL RIRRT+++MLRDRGY V D E+ + E+F KF RE L + +
Sbjct: 8 DETRRLHRIRRTILEMLRDRGYLVLPTKTDLELPL--EEFAHKFDAAGRARESLTMLRQH 65
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
RND S+QIYVFFP E+KVGVK ++ Y R+++ENV RAI+VVQ LTP A+ + E+ +
Sbjct: 66 RNDRSNQIYVFFPKEEKVGVKPIREYCLRLETENVLRAIIVVQTGLTPIAKQAVAELQPR 125
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
FHLE+FQEAELLVNI H LVP+H+VLT E+KKTLLKRY +K+TQ+
Sbjct: 126 FHLELFQEAELLVNITRHQLVPKHEVLTAEQKKTLLKRYQLKDTQLP 172
>gi|302854284|ref|XP_002958651.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
gi|300255976|gb|EFJ40254.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
Length = 202
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 120/162 (74%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
+ + RL+R+RRT +QML DRGY V EIN SK+QF +FGEN +++DL I ++D +
Sbjct: 2 DNLTRLWRVRRTCLQMLNDRGYLVSQEEINTSKDQFRDRFGENPRKDDLTILVPKQDDPT 61
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+Q++VFFP+EQKVGVKT+K RMK E V RAI+V TPFA++ ++++ K+ +E
Sbjct: 62 EQMFVFFPEEQKVGVKTIKLLAERMKDEKVNRAIMVTAVKFTPFAKSALEDMRPKYCIEH 121
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F E+ELLVNI EH LVPEH++L+ +EK+TLL RY +KETQ+
Sbjct: 122 FLESELLVNITEHTLVPEHRILSPDEKRTLLDRYKIKETQLP 163
>gi|307106700|gb|EFN54945.1| hypothetical protein CHLNCDRAFT_134695 [Chlorella variabilis]
Length = 190
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 121/157 (77%), Gaps = 6/157 (3%)
Query: 11 LFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYV 70
+FRIR+T ++ML DRGY + + E + +++QF K+G +++REDL +D ++QI+V
Sbjct: 1 MFRIRKTCLEMLADRGYLITEEERDATRDQFTDKYGPDIRREDLT------DDPTEQIFV 54
Query: 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAE 130
FFP+E KVGVKT+K RM++E V RA++V Q N+TPFA+ C+ E++ K+++E+FQEAE
Sbjct: 55 FFPEEAKVGVKTIKLLAERMRNEGVQRAVMVTQANMTPFAKQCLSEMAPKYYIELFQEAE 114
Query: 131 LLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LLVNI +H LVP+H++LT EEK+TLL RY VK+TQ+
Sbjct: 115 LLVNITKHTLVPQHRILTREEKQTLLDRYKVKDTQLP 151
>gi|303282333|ref|XP_003060458.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457929|gb|EEH55227.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 206
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 121/165 (73%), Gaps = 1/165 (0%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S E++ +LFRI +TV +ML RGY V E+ K+ F +G++ KRE L + R+D
Sbjct: 3 SSEKVTKLFRIHKTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRRDD 62
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK-FH 122
S+ I+VFFP+E+KVGVKT+K Y RMK E+VFRAI+VVQ +LTPFA+ + E +++ F+
Sbjct: 63 PSENIFVFFPEEEKVGVKTIKEYAKRMKDESVFRAIIVVQASLTPFAKQSLLECASQSFY 122
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E FQE ELLVNI EHVLVPEH +L++ EK+TLL RY VK+TQ+
Sbjct: 123 IEQFQEMELLVNITEHVLVPEHVLLSDAEKRTLLARYKVKDTQLP 167
>gi|145346274|ref|XP_001417617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577844|gb|ABO95910.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 205
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+S+++ RLFR+R+T+ +ML RGY V E+ + F FGE KRE L I R+
Sbjct: 1 MSNDKRTRLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRD 60
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI-SAKF 121
D S+ I+VFFPDE+KVGVKT+K RMK ENVFRAI+VVQ +LTPFA+ + E + KF
Sbjct: 61 DPSENIFVFFPDEEKVGVKTIKDLAKRMKDENVFRAIIVVQASLTPFAKQSLLECQTQKF 120
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
++E FQE ELLVNI +HVLVPEH +L++++K+TLL RY VK+TQ+
Sbjct: 121 YIEQFQETELLVNIIDHVLVPEHILLSDDQKRTLLDRYKVKDTQLP 166
>gi|443703356|gb|ELU00950.1| hypothetical protein CAPTEDRAFT_226435 [Capitella teleta]
Length = 210
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 118/168 (70%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
D+EI +L+RIR+TVMQ+ DRGY V E++ + +QF +FG+ R DL++ A
Sbjct: 4 DQEIYKLWRIRKTVMQLCHDRGYLVTQDELDQTIDQFKDQFGDKPSERRPARSDLIVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D DQ++VFFPDE KVG+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPIDQMFVFFPDEPKVGIKTIKTYCQRMQEENISRAIIVVQAGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F EAELL+NI EH LVPEH +LT EEK LL RY +KE+Q+
Sbjct: 124 KYILEQFLEAELLINITEHTLVPEHVLLTPEEKAELLTRYKLKESQLP 171
>gi|357500691|ref|XP_003620634.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495649|gb|AES76852.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 208
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 120/168 (71%), Gaps = 2/168 (1%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M S+E+I +LFRI++T++QML DR Y V + E+ MS+E FI K+GE+MKRE L INK
Sbjct: 1 MVFSEEDITKLFRIQKTLLQMLSDRNYLVEETELTMSREDFIFKYGEHMKREQLEINKTH 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA- 119
RN+ S++I VFF D+ K+GVK ++ + RM ENV ILV Q L+ +AR+ + E+S+
Sbjct: 61 RNNPSEKICVFFSDDAKLGVKIVRGFITRMLQENVDSGILVCQTKLSHYARSAVTEMSSV 120
Query: 120 -KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LEVF E ELLVNI +H VP HQVLT EK+ LLK+YTVK+TQ+
Sbjct: 121 GSKRLEVFLEDELLVNITKHERVPPHQVLTEAEKRALLKKYTVKDTQL 168
>gi|242017042|ref|XP_002429002.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212513848|gb|EEB16264.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 210
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 121/170 (71%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPD+ K+G+KT+KTY RM+ EN+ RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDDPKIGIKTIKTYCQRMQEENIHRAIIVVQQGMTPSAKQSLSD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH V+T EEK+ LL+RY +KE Q+
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTPEEKQELLQRYKLKENQL 170
>gi|412988339|emb|CCO17675.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bathycoccus prasinos]
Length = 205
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 117/159 (73%), Gaps = 2/159 (1%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIY 69
+LFRIR+TV +ML RGY V E+ K+ F+ +FGE + RE L I R+D S+ I+
Sbjct: 9 KLFRIRKTVSKMLASRGYLVSQKELERDKDSFLEEFGE-VSREHLTIMVPKRDDPSENIF 67
Query: 70 VFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI-SAKFHLEVFQE 128
VFFP+E+KVGVK +K Y RM+ ENV RAI+V++ +LTPFA+ + E+ KF +E FQE
Sbjct: 68 VFFPEEEKVGVKMIKDYAKRMREENVMRAIIVIRSSLTPFAKQSLLEVQQQKFIIETFQE 127
Query: 129 AELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
ELLVNI +H+LVP+H +LT+EEKKTLL+RY V+ETQ+
Sbjct: 128 TELLVNITDHILVPKHVLLTDEEKKTLLERYKVRETQLP 166
>gi|348680008|gb|EGZ19824.1| hypothetical protein PHYSODRAFT_494802 [Phytophthora sojae]
Length = 206
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 116/161 (72%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RL+R+R+T ++ML +RGY V + E+ M+ E F A+FG+N RE + I +D SD
Sbjct: 7 EASRLYRVRKTTVKMLHNRGYIVSENELVMTPEAFQAQFGDNPTREMMTILVEKIDDPSD 66
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++VFFP++ KVGVK ++ Y NRMK ENV +AILVVQ+ +TPFAR + E++ ++ +E F
Sbjct: 67 NLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPRYKIEHF 126
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E ELLV+I EH LVP H+VL +EK LLKRY ++++Q+
Sbjct: 127 KETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLP 167
>gi|321475403|gb|EFX86366.1| hypothetical protein DAPPUDRAFT_308488 [Daphnia pulex]
Length = 210
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E R++R+R+T+MQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDESETYRMWRVRKTIMQLCHDRGYLVTQDELDQTLEQFKIQFGDKPSERKPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQSGMTPSAKQSLTD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH VLT EEK+ LL RY +KE Q+
Sbjct: 121 MAPKYILEYFTESELLINITEHELVPEHVVLTPEEKQELLCRYKLKENQL 170
>gi|325181796|emb|CCA16252.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 210
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
LS E + RLFR+R+T ++ML +RGY V + E+ M+ E F +FG+N RE + I +
Sbjct: 8 LSAEAL-RLFRVRKTTVKMLHNRGYIVSENELIMTPEGFQQQFGDNPTREMMTILVEKID 66
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D SD ++VFFP++ KVGVK ++ Y NRMK ENV +AILVVQ+ +TPFAR + E++ ++
Sbjct: 67 DPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPRYK 126
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F+E ELLV+I EH LVP H+VL EEK LLKRY +K++Q+
Sbjct: 127 IEHFKETELLVDITEHTLVPVHRVLCREEKAALLKRYRIKDSQLP 171
>gi|442755873|gb|JAA70096.1| Putative rna polymerase 25-kda subunit common to polymerases i ii
and iii [Ixodes ricinus]
Length = 210
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ +++QF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTQDQFKQQFGDKPSERRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALGD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH VLT EEK LL RY +KE +
Sbjct: 121 MAPKYILEHFLESELLINITEHELVPEHVVLTPEEKAELLARYKLKENHL 170
>gi|149287100|gb|ABR23449.1| 25-kDa subunit RNA polymerase [Ornithodoros parkeri]
Length = 210
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 118/170 (69%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + +QF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALTD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH VLT EEK LL RY +KE +
Sbjct: 121 MAPKYILEYFLESELLINITEHELVPEHVVLTPEEKAELLARYKLKENHL 170
>gi|322797006|gb|EFZ19320.1| hypothetical protein SINV_02648 [Solenopsis invicta]
Length = 211
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 118/171 (69%), Gaps = 5/171 (2%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
M ++E +L+RIR+TVMQ+ DRGY V E++ EQF +FG+ R DL+
Sbjct: 1 MADDEDETYKLWRIRKTVMQLCHDRGYLVTQDELDQDLEQFKEQFGDKPSEKKPARSDLI 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
+ A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ +
Sbjct: 61 VLVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLV 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+++ K+ LE F E+ELL+NI EH LVPEH VLT +EK+ LL RY +KE Q+
Sbjct: 121 DMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 171
>gi|66543279|ref|XP_623541.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
Length = 179
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH VLT +EK+ LL RY +KE Q+
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|198427419|ref|XP_002130595.1| PREDICTED: similar to 25-kDa subunit RNA polymerase [Ciona
intestinalis]
Length = 210
Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 119/171 (69%), Gaps = 6/171 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E RL+RIR+TVMQ+ DRGY V E++ S E+F +FG+ R+DL I
Sbjct: 1 MDDEAETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTI 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E KVGVKT+KTY RM+ EN+ RAI+VVQQ++TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGVKTIKTYCQRMQEENIQRAIIVVQQSMTPSAKQSLFD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
++ K+ LE F E ELL+NI EH LVPEH VLT EEK LL RY +K+ Q+
Sbjct: 121 MAPKYILEQFLEQELLINITEHELVPEHVVLTPEEKSELLTRYKLKDHQLP 171
>gi|452822190|gb|EME29212.1| DNA-directed RNA polymerase II subunit E [Galdieria sulphuraria]
Length = 212
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 124/166 (74%), Gaps = 3/166 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFV--GDFEINMSKEQFIAKFGE-NMKREDLVINKALR 61
++E+ +LFRIR+T+++MLRDRGY V ++ M++E+F ++ + N RE L + K +
Sbjct: 8 EQEVTKLFRIRKTILEMLRDRGYVVLETSSDLEMTREEFGSRLQQANYSRESLTLLKQHQ 67
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D SDQIYVFFP E++V VKT++ Y RM E V++AILVV ++L+PFA+ IQ+++++F
Sbjct: 68 HDPSDQIYVFFPAEERVSVKTLRDYFVRMDQERVYKAILVVIKSLSPFAKQGIQKVASQF 127
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+EVF E ELLVNI H LVP+H+VL+ E KK LLKRY +KE+Q+
Sbjct: 128 KVEVFLEMELLVNITHHELVPKHEVLSTEGKKQLLKRYHLKESQLP 173
>gi|383865249|ref|XP_003708087.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Megachile rotundata]
Length = 210
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH VLT +EK+ LL RY +KE Q+
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKEELLGRYKLKENQL 170
>gi|48124579|ref|XP_396561.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
gi|340724888|ref|XP_003400810.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus terrestris]
gi|380012055|ref|XP_003690105.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis florea]
Length = 210
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH VLT +EK+ LL RY +KE Q+
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|350422012|ref|XP_003493028.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus impatiens]
Length = 210
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH VLT +EK+ LL RY +KE Q+
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|405965226|gb|EKC30623.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Crassostrea gigas]
Length = 210
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 118/168 (70%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
++E +L+RIR+T+MQ+ DRGY V E++ + E+F +FG+ R DL++ A
Sbjct: 4 EQETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSERKPSRSDLIVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E VG+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPNVGIKTIKTYCQRMQEENITRAIIVVQNRMTPSAKQSLTDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F EAELL+NI EH+LVPEH V+T EEK LL RY +KE+Q+
Sbjct: 124 KYILEQFLEAELLINITEHMLVPEHVVMTPEEKTELLSRYKLKESQLP 171
>gi|31235339|ref|XP_319221.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|157128329|ref|XP_001661404.1| DNA-directed RNA polymerase II [Aedes aegypti]
gi|170059825|ref|XP_001865530.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
gi|30174740|gb|EAA43596.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|108872649|gb|EAT36874.1| AAEL011087-PA [Aedes aegypti]
gi|167878475|gb|EDS41858.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
Length = 210
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 115/164 (70%), Gaps = 5/164 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
D E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++ A
Sbjct: 4 DAETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
K+ LE F E+ELL+NI EH LVPEH V+T EEK+ LL RY +KE
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKLKE 167
>gi|357609342|gb|EHJ66401.1| hypothetical protein KGM_04074 [Danaus plexippus]
Length = 210
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 115/164 (70%), Gaps = 5/164 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
D E +L+RIR+TVMQ+ DRGY V E++ + +QF +FG+ R DL++ A
Sbjct: 4 DAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSDKRPARSDLIVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
K+ LE F E+ELL+NI EH LVPEH VLT +EK+ LL RY +KE
Sbjct: 124 KYILEHFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKE 167
>gi|440803359|gb|ELR24265.1| RNA polymerase Rpb5, Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 204
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 124/164 (75%), Gaps = 2/164 (1%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF-GEN-MKREDLVINKALRND 63
+E+ R+F +R+TV+QML+DRGY V +++M ++ F +KF GE+ + RE L + ++D
Sbjct: 2 DEVGRVFLVRKTVLQMLQDRGYIVPQSDLDMDRDSFRSKFMGESALNREALTLLMQKKDD 61
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
+DQI+VF+P++ KVGV+ +K Y +RMK E VFRAI+++QQ LT FA+ E++ ++ +
Sbjct: 62 PTDQIFVFWPEDLKVGVRPVKKYCDRMKEEAVFRAIVIIQQTLTAFAKQVFAEMAPRYTI 121
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
E FQEAELLVNI EH+LVP+H++LT EK+TLL +Y ++++Q+
Sbjct: 122 EHFQEAELLVNITEHILVPKHKLLTELEKQTLLAKYKLEDSQLP 165
>gi|156548548|ref|XP_001604962.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Nasonia vitripennis]
Length = 210
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 118/170 (69%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQSGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH VLT +EK+ LL RY +KE Q+
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|256071874|ref|XP_002572263.1| DNA-directed RNA polymerase II [Schistosoma mansoni]
Length = 208
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR 61
T+ D E +L+RIR+T+++M +DRGY V E+ S E F A G+ R+DL++
Sbjct: 3 TMDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHE 62
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-NLTPFARTCIQEISAK 120
D +D +YVFFP+E+KV +KT++ Y N+M+ ++ +RAILV+Q+ LTP A+T I E+S K
Sbjct: 63 EDPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCK 122
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ LE F E EL+VNI EH LVP+H VLT EEKK LL+RY +KE Q+
Sbjct: 123 YTLECFFENELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQLP 169
>gi|346469147|gb|AEO34418.1| hypothetical protein [Amblyomma maculatum]
Length = 210
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 117/170 (68%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + +QF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARNDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQTGMTPSAKQALGD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH VLT EEK LL RY +KE +
Sbjct: 121 MAPKYILEHFLESELLINITEHELVPEHVVLTPEEKAELLARYKLKENHL 170
>gi|332022832|gb|EGI63105.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Acromyrmex echinatior]
Length = 210
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 117/167 (70%), Gaps = 5/167 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
++E +L+RIR+TVMQ+ DRGY V E++ + E F +FG+ R DL++ A
Sbjct: 4 EDETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLELFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F E+ELL+NI EH LVPEH VLT +EK+ LL RY +KE Q+
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|312383157|gb|EFR28348.1| hypothetical protein AND_03878 [Anopheles darlingi]
Length = 210
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 115/164 (70%), Gaps = 5/164 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
D E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++ A
Sbjct: 4 DAETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
K+ LE F E+ELL+NI EH LVPEH V+T EEK+ LL RY +KE
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKLKE 167
>gi|350018416|dbj|GAA37368.1| DNA-directed RNA polymerases I II and III subunit RPABC1
[Clonorchis sinensis]
Length = 206
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 117/166 (70%), Gaps = 1/166 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+ D E +L+RIR+T+++M +DRGY V E+ + + F G+ R+DL++
Sbjct: 2 IDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQTLDDFKLSVGDPPSRKDLLMVVNHEE 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-NLTPFARTCIQEISAKF 121
D +D +YVFFPDE+KV +KT++ Y N+M+ ++ +RAILV+Q+ LTPFA+T + E+S K+
Sbjct: 62 DPADMLYVFFPDEEKVNMKTIRAYLNQMQQDSTYRAILVLQEKGLTPFAKTALAELSCKY 121
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LE F E EL+VNI EH LVP+H VLT EEKK LL+RY +KE+Q+
Sbjct: 122 TLECFFETELMVNITEHQLVPQHNVLTQEEKKELLERYRLKESQLP 167
>gi|340377807|ref|XP_003387420.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Amphimedon queenslandica]
Length = 210
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 119/171 (69%), Gaps = 6/171 (3%)
Query: 3 LSDEEIK-RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVI 56
+ +EE+ RL+RIR+TVMQM DR Y V E++ + +QF +FGE + R DL I
Sbjct: 1 MDNEEVTYRLWRIRKTVMQMCHDRRYLVTQDELDQTLDQFKEQFGERPNDGHPSRNDLSI 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP++ KVG+KT+K Y RM+ EN+ RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEDPKVGIKTIKQYCGRMQEENISRAIIVVQQGMTPSAKQALVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
++ K+ LE F EAEL++NI EH LVPEH V+T EEK+ LL RY +KE Q+
Sbjct: 121 MAPKYILEQFMEAELMINITEHELVPEHIVMTTEEKRELLARYKLKEHQLP 171
>gi|72109111|ref|XP_783584.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Strongylocentrotus purpuratus]
gi|390354452|ref|XP_003728337.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Strongylocentrotus purpuratus]
Length = 210
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 119/171 (69%), Gaps = 6/171 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
++DE E RL+R+RRT+MQ+ DRGY V E++ + EQF +FG+ R+DL +
Sbjct: 1 MNDEAETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E+KVG+KT+K Y RM+ EN+ RAI+ VQ+ +TP A+T + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEKKVGMKTIKAYCQRMQEENITRAIITVQEKMTPSAKTSLGD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
++ K+ LE F EAELL+NI EH VPEH V+T EEK LL RY +K+ Q+
Sbjct: 121 MAPKYILEQFLEAELLINITEHDFVPEHVVMTGEEKAELLARYKLKDHQLP 171
>gi|56755813|gb|AAW26085.1| SJCHGC05306 protein [Schistosoma japonicum]
gi|226469816|emb|CAX70189.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226469818|emb|CAX70190.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226487596|emb|CAX74668.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
Length = 206
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
L D E +L+RIR+T+++M +DRGY V E+ S E F A G+ R+DL++
Sbjct: 2 LDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHEE 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-NLTPFARTCIQEISAKF 121
D +D +YVFFP+E+KV +KT++ Y N+M+ ++ +RAILV+Q+ LTP A+T I E+S K+
Sbjct: 62 DPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKY 121
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LE F E EL+VNI EH LVP+H VLT EEKK LL+RY +KE Q+
Sbjct: 122 TLECFFENELMVNITEHQLVPQHDVLTQEEKKELLERYRLKENQLP 167
>gi|307214976|gb|EFN89821.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Harpegnathos saltator]
Length = 210
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 117/167 (70%), Gaps = 5/167 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
++E +L+RIR+T+MQ+ DRGY V E++ + EQF +G+ R +L++ A
Sbjct: 4 EDETYKLWRIRKTIMQLCHDRGYLVTQDELDQTIEQFKEHYGDKPSEKRPARSELIVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLTDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K+ LE F E+ELL+NI EH LVPEH VLT +EK+ LL RY +KE Q+
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|323449166|gb|EGB05056.1| hypothetical protein AURANDRAFT_31430 [Aureococcus anophagefferens]
Length = 204
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 111/161 (68%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E LFRIRRT+++ML+ R Y V ++ MS E F +FGE KR DL I D+ D
Sbjct: 5 EASHLFRIRRTLLKMLKKRNYVVDVAQLEMSSEAFQEQFGEQPKRTDLTILAEHETDAED 64
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
Q+++F PDE+KVGVKT+K Y MK +V AILVV+ +TPFA+T +QE+++ + +E F
Sbjct: 65 QVFIFLPDEEKVGVKTIKQYCEMMKEASVSHAILVVKAGITPFAKTALQEMASMYLIEHF 124
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
++ ELLV+I EH LVP HQ L+ E+K LLKRY +KE+Q+
Sbjct: 125 RDNELLVDITEHKLVPAHQPLSPEDKAALLKRYKLKESQLP 165
>gi|301106302|ref|XP_002902234.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
gi|262098854|gb|EEY56906.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
Length = 206
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 113/161 (70%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RL+R+R+T ++ML +R Y V + E+ M+ E F +FG+N RE + I +D SD
Sbjct: 7 EASRLYRVRKTTVKMLHNRSYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKIDDPSD 66
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++VFFP++ KVGVK ++ Y NRMK ENV +AILVVQ+ +TPFAR + E++ ++ +E F
Sbjct: 67 NLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPRYKIEHF 126
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E ELLV+I EH LVP H+VL EK LLKRY ++++Q+
Sbjct: 127 KETELLVDITEHTLVPVHRVLDRNEKAALLKRYRIRDSQLP 167
>gi|242247587|ref|NP_001156054.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1-like
[Acyrthosiphon pisum]
gi|239793387|dbj|BAH72818.1| ACYPI000388 [Acyrthosiphon pisum]
Length = 210
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDECESYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCQRMQEETITRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH VLT +EK+ LL RY +KE Q+
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLCRYKLKENQL 170
>gi|289740815|gb|ADD19155.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 116/167 (69%), Gaps = 6/167 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
++ K+ LE F E+ELL+NI EH LVPEH V+T EEK+ LL RY +KE
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKLKE 167
>gi|360043810|emb|CCD81356.1| putative dna-directed RNA polymerase II [Schistosoma mansoni]
Length = 205
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+ D E +L+RIR+T+++M +DRGY V E+ S E F A G+ R+DL++
Sbjct: 1 MDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEE 60
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-NLTPFARTCIQEISAKF 121
D +D +YVFFP+E+KV +KT++ Y N+M+ ++ +RAILV+Q+ LTP A+T I E+S K+
Sbjct: 61 DPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKY 120
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LE F E EL+VNI EH LVP+H VLT EEKK LL+RY +KE Q+
Sbjct: 121 TLECFFENELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQLP 166
>gi|91087261|ref|XP_975533.1| PREDICTED: similar to AGAP010064-PA [Tribolium castaneum]
gi|270010583|gb|EFA07031.1| hypothetical protein TcasGA2_TC010003 [Tribolium castaneum]
Length = 210
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/167 (49%), Positives = 115/167 (68%), Gaps = 6/167 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF + G+ R DL I
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTI 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+K +KTY RM+ EN+ RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKAIKTYCQRMQDENIHRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
++ K+ LE F E+ELL+NI EH LVPEH V+T EEK+ LL RY +KE
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTPEEKQELLTRYKLKE 167
>gi|391342990|ref|XP_003745798.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Metaseiulus occidentalis]
Length = 210
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 116/170 (68%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ E F +FG+ + R DLV+
Sbjct: 1 MDDEAETYKLWRIRKTIMQLCHDRGYLVTQEELDQDLEGFKEQFGDKPSDKHPARGDLVV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
+ +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP AR + +
Sbjct: 61 LVSHNDDPTDQMFVFFPDEAKIGIKTIKTYCQRMQEENISRAIIVVQAGMTPSARQALGD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ K+ LE F E+ELL+NI EH LVPEH VLT EEK LL RY +KE +
Sbjct: 121 MAPKYILEHFLESELLINIIEHELVPEHVVLTPEEKTELLSRYKLKENHL 170
>gi|289740817|gb|ADD19156.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 115/167 (68%), Gaps = 6/167 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
++ K+ LE F E+ELL NI EH LVPEH V+T EEK+ LL RY +KE
Sbjct: 121 MAPKYILEQFLESELLTNITEHELVPEHVVMTPEEKQELLARYKLKE 167
>gi|332373332|gb|AEE61807.1| unknown [Dendroctonus ponderosae]
Length = 210
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 115/167 (68%), Gaps = 6/167 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEHFGDKPSEKRPSRSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G++T+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIRTIKTYCQRMQDENIHRAIIVVQAGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
++ K+ LE F E+ELL+NI EH LVPEH V+ EEK+ LL RY +KE
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMNPEEKQELLARYKLKE 167
>gi|149034611|gb|EDL89348.1| rCG29511, isoform CRA_d [Rattus norvegicus]
Length = 242
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 117/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E+Q+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLP 171
>gi|1060912|dbj|BAA07406.1| RPB5 [Homo sapiens]
Length = 210
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 116/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F E ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 123 PKYILEQFLEQELLINITEHELVPEHVVMTKEEVSELLARYKLRENQLP 171
>gi|291240531|ref|XP_002740164.1| PREDICTED: DNA directed RNA polymerase II polypeptide E-like
[Saccoglossus kowalevskii]
Length = 210
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
D E +L+RIR+T+MQ+ DRGY V E++ + +QF ++FG+ +R DL + A
Sbjct: 4 DAETYKLWRIRKTIMQLCHDRGYLVTQEELDQTLDQFKSQFGDKPSEGRPRRNDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ+++FFP+E K+G+KT+KTY +M+ EN+ RA +VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFIFFPEEPKIGIKTIKTYCQKMQEENITRATIVVQAGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F EAELL+N+ EH LVPEH V+T EEK LL RY +KE Q+
Sbjct: 124 KYILEQFLEAELLINLTEHELVPEHVVMTPEEKAELLARYRLKEHQLP 171
>gi|341885241|gb|EGT41176.1| CBN-RPB-5 protein [Caenorhabditis brenneri]
gi|341885706|gb|EGT41641.1| hypothetical protein CAEBREN_11585 [Caenorhabditis brenneri]
Length = 211
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 118/172 (68%), Gaps = 7/172 (4%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F FG+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLEHFKETFGDRPSEKKPARADLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFPD+ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPDDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+++ K+ LE F EAEL+VNI EH LVPEH V+T+EEK LL RY +K++Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLP 172
>gi|194752750|ref|XP_001958682.1| GF12445 [Drosophila ananassae]
gi|190619980|gb|EDV35504.1| GF12445 [Drosophila ananassae]
Length = 210
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 116/167 (69%), Gaps = 6/167 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
++ K+ LE F E+ELL+NI EH LVPEH V+T EEK+ LL RY +KE
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTAEEKQELLSRYKLKE 167
>gi|124249077|ref|NP_079830.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Mus
musculus]
gi|157819761|ref|NP_001103084.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rattus
norvegicus]
gi|54036414|sp|Q80UW8.1|RPAB1_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|182676546|sp|B0BNE2.1|RPAB1_RAT RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|28374319|gb|AAH45521.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|74194812|dbj|BAE25998.1| unnamed protein product [Mus musculus]
gi|74198334|dbj|BAE43245.1| unnamed protein product [Mus musculus]
gi|74205025|dbj|BAE20985.1| unnamed protein product [Mus musculus]
gi|74208142|dbj|BAE26292.1| unnamed protein product [Mus musculus]
gi|148699661|gb|EDL31608.1| mCG13422, isoform CRA_a [Mus musculus]
gi|149034612|gb|EDL89349.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034613|gb|EDL89350.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034614|gb|EDL89351.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|165971683|gb|AAI58788.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Rattus
norvegicus]
Length = 210
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 117/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E+Q+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLP 171
>gi|195426896|ref|XP_002061524.1| GK20665 [Drosophila willistoni]
gi|194157609|gb|EDW72510.1| GK20665 [Drosophila willistoni]
Length = 210
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 116/167 (69%), Gaps = 6/167 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
++ K+ LE F E+ELL+NI EH LVPEH V+T EEK+ LL RY +KE
Sbjct: 121 MAPKYILEQFLESELLINITEHDLVPEHVVMTAEEKQELLSRYKLKE 167
>gi|348504738|ref|XP_003439918.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Oreochromis niloticus]
Length = 210
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
DEE RL++IR+T+MQ+ DRGY V E++ + E+F ++FG+ +R DL + A
Sbjct: 4 DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLP 171
>gi|387915534|gb|AFK11376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Callorhinchus milii]
Length = 210
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 117/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F +FG+ + +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRNQFGDKPSEGHPRRSDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLP 171
>gi|410949981|ref|XP_003981695.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Felis catus]
Length = 212
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 171
>gi|298712690|emb|CBJ48715.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 212
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 120/167 (71%), Gaps = 3/167 (1%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
LSDE K ++RIR+T M+ML RGY V ++M+ E F+ ++G R DL + +
Sbjct: 8 LSDEGHK-IYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVD 66
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D DQI+VFFPD++KVGVK +++Y+ +M E V RAI+V++ +TPFAR+ IQE+ A+
Sbjct: 67 DPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQRE 126
Query: 123 LEV--FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
++V F++AEL+++I EH LVPEHQVL++E+K LLKRY +K+TQ+
Sbjct: 127 VQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLP 173
>gi|410342181|gb|JAA40037.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342183|gb|JAA40038.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342185|gb|JAA40039.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
Length = 217
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 116/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 123 PKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 171
>gi|355702921|gb|EHH29412.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
Length = 210
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVSELLARYKLRENQLP 171
>gi|19922004|ref|NP_610630.1| Rpb5, isoform A [Drosophila melanogaster]
gi|442623281|ref|NP_001260878.1| Rpb5, isoform B [Drosophila melanogaster]
gi|194884129|ref|XP_001976148.1| GG22706 [Drosophila erecta]
gi|195333273|ref|XP_002033316.1| GM20482 [Drosophila sechellia]
gi|195483584|ref|XP_002090346.1| GE13062 [Drosophila yakuba]
gi|195551744|ref|XP_002076283.1| GD15257 [Drosophila simulans]
gi|7303678|gb|AAF58728.1| Rpb5, isoform A [Drosophila melanogaster]
gi|17945808|gb|AAL48951.1| RE34924p [Drosophila melanogaster]
gi|190659335|gb|EDV56548.1| GG22706 [Drosophila erecta]
gi|194125286|gb|EDW47329.1| GM20482 [Drosophila sechellia]
gi|194176447|gb|EDW90058.1| GE13062 [Drosophila yakuba]
gi|194201932|gb|EDX15508.1| GD15257 [Drosophila simulans]
gi|220948406|gb|ACL86746.1| Rpb5-PA [synthetic construct]
gi|220957602|gb|ACL91344.1| Rpb5-PA [synthetic construct]
gi|440214282|gb|AGB93411.1| Rpb5, isoform B [Drosophila melanogaster]
Length = 210
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 116/167 (69%), Gaps = 6/167 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
++ K+ LE F E+ELL+NI EH LVPEH V+T EEK+ LL RY +KE
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKE 167
>gi|417408698|gb|JAA50889.1| Putative dna-directed rna polymerases i ii and iii subunit
rpabc1-like isoform 2, partial [Desmodus rotundus]
Length = 212
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 6 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 65
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 66 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 125
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 126 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 173
>gi|195164101|ref|XP_002022887.1| GL16482 [Drosophila persimilis]
gi|198471627|ref|XP_002133786.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
gi|194104949|gb|EDW26992.1| GL16482 [Drosophila persimilis]
gi|198146002|gb|EDY72413.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 116/167 (69%), Gaps = 6/167 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
++ K+ LE F E+ELL+NI EH LVPEH V+T EEK+ LL RY +KE
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKE 167
>gi|345786834|ref|XP_854641.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Canis lupus familiaris]
Length = 210
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 116/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 123 PKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 171
>gi|355712729|gb|AES04446.1| polymerase II polypeptide E, 25kDa [Mustela putorius furo]
Length = 209
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 116/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 123 PKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 171
>gi|195119282|ref|XP_002004160.1| GI19761 [Drosophila mojavensis]
gi|195401380|ref|XP_002059291.1| GJ18195 [Drosophila virilis]
gi|193909228|gb|EDW08095.1| GI19761 [Drosophila mojavensis]
gi|194142297|gb|EDW58703.1| GJ18195 [Drosophila virilis]
Length = 210
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 116/167 (69%), Gaps = 6/167 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
++ K+ LE F E+ELL+NI EH LVPEH V+T E+K+ LL RY +KE
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKLKE 167
>gi|14589951|ref|NP_002686.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Homo
sapiens]
gi|149761124|ref|XP_001496313.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Equus caballus]
gi|301776310|ref|XP_002923555.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Ailuropoda melanoleuca]
gi|301776312|ref|XP_002923556.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Ailuropoda melanoleuca]
gi|335282254|ref|XP_003354010.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Sus scrofa]
gi|335282256|ref|XP_003354011.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Sus scrofa]
gi|348550374|ref|XP_003461007.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cavia porcellus]
gi|395831291|ref|XP_003788737.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Otolemur garnettii]
gi|402903526|ref|XP_003914616.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Papio anubis]
gi|403308121|ref|XP_003944520.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Saimiri boliviensis boliviensis]
gi|403308123|ref|XP_003944521.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Saimiri boliviensis boliviensis]
gi|403308125|ref|XP_003944522.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Saimiri boliviensis boliviensis]
gi|403308127|ref|XP_003944523.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Saimiri boliviensis boliviensis]
gi|426229485|ref|XP_004008821.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Ovis aries]
gi|426229487|ref|XP_004008822.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Ovis aries]
gi|426386425|ref|XP_004059685.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Gorilla gorilla gorilla]
gi|426386427|ref|XP_004059686.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Gorilla gorilla gorilla]
gi|426386429|ref|XP_004059687.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Gorilla gorilla gorilla]
gi|426386431|ref|XP_004059688.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Gorilla gorilla gorilla]
gi|678549|gb|AAA62401.1| RNA polymerase II 23kD subunit [Homo sapiens]
gi|13325244|gb|AAH04441.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
gi|119589954|gb|EAW69548.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|119589955|gb|EAW69549.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|189069173|dbj|BAG35511.1| unnamed protein product [Homo sapiens]
gi|208967082|dbj|BAG73555.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|296485369|tpg|DAA27484.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bos taurus]
gi|312152670|gb|ADQ32847.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|355755269|gb|EHH59016.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
fascicularis]
gi|387542622|gb|AFJ71938.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
gi|410264992|gb|JAA20462.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410264994|gb|JAA20463.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299730|gb|JAA28465.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299732|gb|JAA28466.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|440910422|gb|ELR60220.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
grunniens mutus]
Length = 210
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 116/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 123 PKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 171
>gi|195026900|ref|XP_001986362.1| GH20567 [Drosophila grimshawi]
gi|193902362|gb|EDW01229.1| GH20567 [Drosophila grimshawi]
Length = 210
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 116/167 (69%), Gaps = 6/167 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
++ K+ LE F E+ELL+NI EH LVPEH V+T E+K+ LL RY +KE
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKLKE 167
>gi|197098756|ref|NP_001126823.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Pongo
abelii]
gi|75054736|sp|Q5R587.1|RPAB1_PONAB RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|55732763|emb|CAH93079.1| hypothetical protein [Pongo abelii]
Length = 210
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 116/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 123 PKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 171
>gi|46255774|gb|AAH34144.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
Length = 210
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 116/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 123 PKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 171
>gi|350537103|ref|NP_001232745.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|118103219|ref|XP_418224.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Gallus gallus]
gi|126323555|ref|XP_001365263.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Monodelphis domestica]
gi|395513329|ref|XP_003760879.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Sarcophilus harrisii]
gi|197127122|gb|ACH43620.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|387018228|gb|AFJ51232.1| putative DNA directed RNA polymerase II polypeptide E [Crotalus
adamanteus]
Length = 210
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 116/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 123 PKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 171
>gi|260788314|ref|XP_002589195.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
gi|229274370|gb|EEN45206.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
Length = 210
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 115/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINK 58
++E +L+RIR+T+MQ+ DRGY V E++ +QF +FG+ R+DLV+
Sbjct: 3 DEQETYKLWRIRKTIMQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFF DE K+G+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFADEPKIGIKTIKMYCQRMQEENISRAIIVVQMGMTPSAKQALVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F E+ELL+NI EH LVPEH V+T EEK LL RY +KE Q+
Sbjct: 123 PKYILEQFLESELLINITEHQLVPEHVVMTPEEKAELLARYRLKEHQLP 171
>gi|226371984|gb|ACO51617.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rana
catesbeiana]
Length = 210
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 117/169 (69%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T +E LL RY ++E+Q+
Sbjct: 123 PKYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLP 171
>gi|432855568|ref|XP_004068251.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Oryzias latipes]
Length = 210
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F ++FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLP 171
>gi|297275632|ref|XP_001117242.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Macaca mulatta]
Length = 203
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+E+ RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEDTYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 171
>gi|241017563|gb|ACS66689.1| RNA polymerase II B subunit [Caenorhabditis brenneri]
Length = 211
Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 117/172 (68%), Gaps = 7/172 (4%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ F FG+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFPD+ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPDDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+++ K+ LE F EAEL+VNI EH LVPEH V+T+EEK LL RY +K++Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLP 172
>gi|17507947|ref|NP_491961.1| Protein RPB-5 [Caenorhabditis elegans]
gi|54036433|sp|Q9N5K2.1|RPAB1_CAEEL RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
gi|351064177|emb|CCD72467.1| Protein RPB-5 [Caenorhabditis elegans]
Length = 211
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 118/172 (68%), Gaps = 7/172 (4%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F ++G+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFP++ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+++ K+ LE F EAEL+VNI EH LVPEH V+T EEK LL RY +K++Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLP 172
>gi|62858213|ref|NP_001016473.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
(Silurana) tropicalis]
gi|148225220|ref|NP_001083516.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
laevis]
gi|38051843|gb|AAH60467.1| MGC68604 protein [Xenopus laevis]
gi|89272916|emb|CAJ82278.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
gi|163916440|gb|AAI57232.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
Length = 210
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 117/169 (69%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T +E LL RY ++E+Q+
Sbjct: 123 PKYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLP 171
>gi|441656609|ref|XP_004093285.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II,
and III subunit RPABC1 [Nomascus leucogenys]
Length = 210
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 115/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQXGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 123 PKYILEQFLQQELLINITEHELVPEHVVMTKEEMTELLARYKLRENQLP 171
>gi|268568358|ref|XP_002640230.1| C. briggsae CBR-RPB-5 protein [Caenorhabditis briggsae]
gi|296439763|sp|A8XGH1.1|RPAB1_CAEBR RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 211
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 117/172 (68%), Gaps = 7/172 (4%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F FG+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFP++ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+++ K+ LE F EAEL+VNI EH LVPEH V+T EEK LL RY +K++Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLP 172
>gi|225706160|gb|ACO08926.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Osmerus mordax]
Length = 210
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLTRYKLKESQLP 171
>gi|294950415|ref|XP_002786618.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239900910|gb|EER18414.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 115/168 (68%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE----NMKREDLVINKAL 60
D+ RL+R+R+T+ ++L+DRGY V +N +KE F ++ E R DL+I +
Sbjct: 7 DDTTIRLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSK 66
Query: 61 RNDSSDQIYVFFPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
++D SDQ+ VFFPDE K VGVK ++T +M+ + + RAILVVQQ LT FA+T IQE S
Sbjct: 67 QDDPSDQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASP 126
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ +EVF E+EL+VNI H LVPEH+ LT EEK+ LL+RY VKE Q+
Sbjct: 127 QMEIEVFNESELVVNITHHELVPEHKPLTPEEKRLLLERYKVKENQLP 174
>gi|410921186|ref|XP_003974064.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Takifugu rubripes]
gi|47216655|emb|CAG04853.1| unnamed protein product [Tetraodon nigroviridis]
Length = 210
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLP 171
>gi|294944697|ref|XP_002784385.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239897419|gb|EER16181.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 113/163 (69%), Gaps = 5/163 (3%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE----NMKREDLVINKALRNDSS 65
RL+R+R+T+ ++L+DRGY V +N +KE F ++ E R DL+I + ++D S
Sbjct: 12 RLWRVRKTIFELLQDRGYLVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPS 71
Query: 66 DQIYVFFPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
DQ+ VFFPDE K VGVK ++T +M+ + + RAILVVQQ LT FA+T IQE S + +E
Sbjct: 72 DQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIE 131
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
VF E+EL+VNI H LVPEH+ LT EEK+ LL+RY VKE Q+
Sbjct: 132 VFNESELVVNITHHELVPEHKPLTAEEKRLLLERYKVKENQLP 174
>gi|90083116|dbj|BAE90640.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 115/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE L RY ++E Q+
Sbjct: 123 PKYILEQFLQQELLINITEHELVPEHVVMTKEEVTEPLARYKLRENQLP 171
>gi|57525846|ref|NP_001003564.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Danio
rerio]
gi|50417194|gb|AAH77151.1| Polymerase (RNA) II (DNA directed) polypeptide E [Danio rerio]
Length = 210
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLP 171
>gi|209733016|gb|ACI67377.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|225715082|gb|ACO13387.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 115/168 (68%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
DEE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL + A
Sbjct: 4 DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA +VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLP 171
>gi|116242767|sp|P19388.4|RPAB1_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II 23
kDa polypeptide; AltName: Full=DNA-directed RNA
polymerase II subunit E; AltName: Full=RPB5 homolog;
AltName: Full=XAP4
gi|2896797|gb|AAC03238.1| RPB5_Human [Homo sapiens]
gi|311349818|gb|ADP92094.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349820|gb|ADP92095.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349822|gb|ADP92096.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349824|gb|ADP92097.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349826|gb|ADP92098.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349828|gb|ADP92099.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349830|gb|ADP92100.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349832|gb|ADP92101.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349834|gb|ADP92102.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349836|gb|ADP92103.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349838|gb|ADP92104.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349840|gb|ADP92105.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349842|gb|ADP92106.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349844|gb|ADP92107.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349846|gb|ADP92108.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349848|gb|ADP92109.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349850|gb|ADP92110.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349852|gb|ADP92111.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349854|gb|ADP92112.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349856|gb|ADP92113.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349858|gb|ADP92114.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349860|gb|ADP92115.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349862|gb|ADP92116.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349864|gb|ADP92117.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349866|gb|ADP92118.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349868|gb|ADP92119.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349870|gb|ADP92120.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349872|gb|ADP92121.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349874|gb|ADP92122.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349876|gb|ADP92123.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349878|gb|ADP92124.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349880|gb|ADP92125.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349882|gb|ADP92126.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349884|gb|ADP92127.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349886|gb|ADP92128.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349888|gb|ADP92129.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349890|gb|ADP92130.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349892|gb|ADP92131.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349894|gb|ADP92132.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349896|gb|ADP92133.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
Length = 210
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 115/168 (68%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+ G+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 171
>gi|224001668|ref|XP_002290506.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
gi|220973928|gb|EED92258.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
Length = 226
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 109/161 (67%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLFR+ +TV ML RGY V M+ F +FGE RE L I +D ++
Sbjct: 27 EASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRFGEYPSREGLTILVEKADDETN 86
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
Q++VFFP+++KVGVK +K T+RMK ENV AILV++ ++TPFA+ + E+S F LE F
Sbjct: 87 QLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHF 146
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+EAELLV+I EH LVPEH VL+ EK+ LLKRY ++ETQ+
Sbjct: 147 KEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRLRETQLP 187
>gi|292611220|ref|XP_002661023.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Danio rerio]
Length = 210
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 115/169 (68%), Gaps = 5/169 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+TVMQ+ DRGY V E++ + ++F +FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTVMQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEELKVGIKTIKMYCQRMQEENITRAVIVVQTGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KETQ+
Sbjct: 123 PKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKETQLP 171
>gi|84000159|ref|NP_001033182.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
taurus]
gi|109893821|sp|Q2T9T3.1|RPAB1_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|83405854|gb|AAI11281.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Bos
taurus]
Length = 210
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 114/168 (67%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V ++ + E+F A+FG +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 171
>gi|119589953|gb|EAW69547.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_a [Homo sapiens]
Length = 211
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 117/169 (69%), Gaps = 6/169 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYT-VKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY+ ++E Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYSKLRENQLP 172
>gi|225717382|gb|ACO14537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 115/168 (68%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLAA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA +VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLP 171
>gi|317574789|ref|NP_001187413.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
gi|308322947|gb|ADO28611.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
Length = 210
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 115/168 (68%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++ R+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL + A
Sbjct: 4 EEETYRLWKTRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLP 171
>gi|229366774|gb|ACQ58367.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Anoplopoma fimbria]
Length = 210
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V++ EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMSKEEVVELLARYKLKESQLP 171
>gi|312095335|ref|XP_003148322.1| RPB-5 protein [Loa loa]
gi|307756513|gb|EFO15747.1| DNA-directed RNA polymerase I [Loa loa]
Length = 211
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 118/172 (68%), Gaps = 7/172 (4%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
++D+E++ +L+R+R+T+MQM DRGY V E++ + E F FG+ + R +L
Sbjct: 1 MADDELETYKLWRVRKTIMQMCHDRGYLVTQEELDQTLENFKETFGDKPSERHPSRNELT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
+ A +D +DQ++VFFP++ K+G+KT+K +M+ + + RAI+VVQ +TP A+ I
Sbjct: 61 VLVAHNDDPTDQMFVFFPEDSKIGIKTIKAICQQMQEQAITRAIIVVQTGMTPSAKQAIA 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+++ K+ LE F EAEL+VNI EH LVPEH V+TNEEK LL RY +K+TQ+
Sbjct: 121 DMAPKYTLEQFLEAELMVNITEHELVPEHVVMTNEEKNELLGRYKLKDTQLP 172
>gi|209732756|gb|ACI67247.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|303659190|gb|ADM15954.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 210
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 115/168 (68%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA +VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLP 171
>gi|307108804|gb|EFN57043.1| hypothetical protein CHLNCDRAFT_48698 [Chlorella variabilis]
Length = 203
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 109/159 (68%), Gaps = 5/159 (3%)
Query: 14 IRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG-----ENMKREDLVINKALRNDSSDQI 68
IRRT ++MLRDRGY + ++ MS +F+ KF EN++R+ + I + +D + Q
Sbjct: 6 IRRTCLEMLRDRGYQIDKEDVEMSGRKFVEKFATEPDPENVRRDAITILASKADDPTHQA 65
Query: 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQE 128
+VFF ++ K+GVK +K RM+ E V R+ILV+Q LTPFA+ CIQE+SAKF +EVF E
Sbjct: 66 FVFFFEDPKLGVKAIKAVAVRMRDERVPRSILVLQDKLTPFAKQCIQEMSAKFAIEVFAE 125
Query: 129 AELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
EL VNI H +VP+HQVL+ +K LL+RY VK+TQ+
Sbjct: 126 GELRVNITRHSMVPQHQVLSRLDKAALLERYKVKDTQLP 164
>gi|308505230|ref|XP_003114798.1| CRE-RPB-5 protein [Caenorhabditis remanei]
gi|308258980|gb|EFP02933.1| CRE-RPB-5 protein [Caenorhabditis remanei]
Length = 211
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 118/172 (68%), Gaps = 7/172 (4%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F ++G+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKEQYGDRPSEKKPARSDLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFP++ K+G+KT+K +M+ +N+ RA++VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAVIVVQIGMTPSAKQSIG 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+++ K+ LE F EAEL+VNI EH LVPEH V+T +EK LL RY +K++Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTADEKAELLARYKLKDSQLP 172
>gi|308321620|gb|ADO27961.1| DNA-directed RNA polymerases I, II and III subunit rpabc1
[Ictalurus furcatus]
Length = 210
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 115/168 (68%), Gaps = 5/168 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y R++ EN+ RAI+VVQ +TP A+ +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRIQEENITRAIIVVQMGMTPSAKQSPVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLP 171
>gi|344243380|gb|EGV99483.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Cricetulus griseus]
Length = 218
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 117/176 (66%), Gaps = 13/176 (7%)
Query: 5 DEEIKRLFRIRRTVMQ--------MLRDRGYFVGDFEINMSKEQFIAKFGENM-----KR 51
+EE RL++IR+T+MQ + DRGY V E++ + E+F A+FG+ +R
Sbjct: 4 EEETYRLWKIRKTIMQASDSLSLQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRR 63
Query: 52 EDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+
Sbjct: 64 TDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAK 123
Query: 112 TCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ +++ K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E+Q+
Sbjct: 124 QSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLP 179
>gi|313226453|emb|CBY21598.1| unnamed protein product [Oikopleura dioica]
Length = 210
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 111/163 (68%), Gaps = 5/163 (3%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKALRNDS 64
+L+RIR+T+M M DR Y V E++ + EQF A+FG R+DL I +D
Sbjct: 9 KLWRIRKTIMAMCHDRKYLVAQRELDQTLEQFKAEFGSQPSQGQPSRKDLTIIVCHSDDP 68
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
+DQ++VFFP++ KV +K +K Y RM+ EN+ RA++V+QQ++TP A+ + +++ K+ LE
Sbjct: 69 TDQMFVFFPEDPKVTIKQVKIYCQRMQEENITRALIVIQQSMTPSAKQALDDMAPKYTLE 128
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F E EL++N+ EH LVP H VLT++EK LLKRY +KE+Q+
Sbjct: 129 SFYEQELMINLTEHELVPTHAVLTDDEKNELLKRYKLKESQLP 171
>gi|148699662|gb|EDL31609.1| mCG13422, isoform CRA_b [Mus musculus]
Length = 165
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 110/160 (68%), Gaps = 5/160 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 6 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 65
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 66 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 125
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
K+ LE F + ELL+NI EH LVPEH V+T EE LL R
Sbjct: 126 PKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 165
>gi|20071300|gb|AAH26842.1| Polr2e protein [Mus musculus]
Length = 162
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 110/160 (68%), Gaps = 5/160 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
K+ LE F + ELL+NI EH LVPEH V+T EE LL R
Sbjct: 123 PKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162
>gi|219112619|ref|XP_002178061.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410946|gb|EEC50875.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 228
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 112/161 (69%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLFR+ RT+ ML RGY V ++ F +FGE RE+L I +D ++
Sbjct: 29 EAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTN 88
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
Q+++FFP+++KVGVK +K YT+RM++E+V AI++++ ++TPFA+ +QE+S F +E F
Sbjct: 89 QLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHF 148
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E+ELLV+I +H LVP HQVLT EK LLKRY +K++Q+
Sbjct: 149 KESELLVDITKHQLVPVHQVLTPNEKNELLKRYRLKDSQLP 189
>gi|324521545|gb|ADY47878.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Ascaris
suum]
Length = 211
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 116/172 (67%), Gaps = 7/172 (4%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
++D+E++ +L+R+R+TVMQM DRGY V E++ + + F FG+ R +L
Sbjct: 1 MADDELETYKLWRVRKTVMQMCHDRGYLVTQEELDQTLDNFKETFGDKPSERKPGRNELT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFP++ K+G+KT+K +M+ + + RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPTDQMFVFFPEDAKIGIKTIKAICQQMQEQAITRAIIVVQAGMTPSAKQAIT 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+++ K+ LE F EAEL+VNI EH LVPEH V+ NEEK LL RY +K+TQ+
Sbjct: 121 DMAPKYTLEQFLEAELMVNITEHELVPEHVVMNNEEKTELLARYKLKDTQLP 172
>gi|357500693|ref|XP_003620635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495650|gb|AES76853.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 239
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 118/199 (59%), Gaps = 33/199 (16%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M ++E+I +L+RIR+T++QML DR Y V + ++ MS+E FI KFGE+MKRE L IN
Sbjct: 1 MVFTEEDITKLYRIRKTILQMLFDRNYLVDETQLTMSREDFIFKFGEHMKREQLEINTTH 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA- 119
RN+ S++I VFF D+ K+GV ++ NRM ENV I+V Q L+P AR + +S+
Sbjct: 61 RNNLSEKICVFFFDDAKLGVNIVRGIINRMLKENVDNGIMVCQNKLSPAARKAVAGMSSI 120
Query: 120 -KFHLEVF-------------------------------QEAELLVNIKEHVLVPEHQVL 147
LEVF +E ELLVNI +H VP HQVL
Sbjct: 121 GSKRLEVFMDTDTCRTAGTPSIKSVGAIELDSLMCRWWKKEDELLVNITKHERVPPHQVL 180
Query: 148 TNEEKKTLLKRYTVKETQV 166
T+ EKK LLKRYTVK+TQ+
Sbjct: 181 TDTEKKALLKRYTVKDTQL 199
>gi|326934422|ref|XP_003213289.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Meleagris gallopavo]
Length = 209
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 113/168 (67%), Gaps = 6/168 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F +FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++V FP E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVSFP-EPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 122
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 123 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 170
>gi|114674426|ref|XP_512960.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan troglodytes]
Length = 230
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 5/158 (3%)
Query: 15 RRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIY 69
R+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++
Sbjct: 34 RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 93
Query: 70 VFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEA 129
VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F +
Sbjct: 94 VFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQ 153
Query: 130 ELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 154 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 191
>gi|354480932|ref|XP_003502657.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cricetulus griseus]
Length = 235
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 117/193 (60%), Gaps = 30/193 (15%)
Query: 5 DEEIKRLFRIRRTVMQ-------------------------MLRDRGYFVGDFEINMSKE 39
+EE RL++IR+T+MQ + DRGY V E++ + E
Sbjct: 4 EEETYRLWKIRKTIMQASDRPASSPHPASGGLLRAHTALMGLCHDRGYLVTQDELDQTLE 63
Query: 40 QFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSEN 94
+F A+FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN
Sbjct: 64 EFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEEN 123
Query: 95 VFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKT 154
+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPEH V+T EE
Sbjct: 124 ITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTE 183
Query: 155 LLKRYTVKETQVS 167
LL RY ++E+Q+
Sbjct: 184 LLARYKLRESQLP 196
>gi|182676597|sp|Q54EH2.2|RPAB1_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 197
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 105/164 (64%), Gaps = 9/164 (5%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E+I RL +IR+TV+QML DR Y + +E +E F++ RE+L + ++D +
Sbjct: 2 EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPT 54
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS--AKFHL 123
D IYVFFPD KVGV +K Y + MK RAI+VVQQN+TPFA+ + E S K L
Sbjct: 55 DSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITL 114
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
E F EAELLVNI H LVP+H +LT EEK LL RY +KE+Q+
Sbjct: 115 EQFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLP 158
>gi|196010385|ref|XP_002115057.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582440|gb|EDV22513.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 210
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 9/170 (5%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR--- 61
+EE +L+RIR+TVMQM DRGY V E++ + +QF +F M V + L
Sbjct: 4 EEEAYKLWRIRKTVMQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQV--RGLLSML 61
Query: 62 ----NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
+D ++Q++VFFPDE KVG+ T+K Y RM+ EN+ RAI+++Q +TP A+ + ++
Sbjct: 62 VHHIDDPTEQLFVFFPDEPKVGINTIKKYCQRMQRENINRAIIIIQSGMTPTAKQSLIDM 121
Query: 118 SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ K+ LE F E+EL++NI EH LVP+H V++ EEK LL RY +KE Q+
Sbjct: 122 APKYTLESFMESELMINITEHHLVPKHIVMSPEEKAELLARYKLKEHQLP 171
>gi|198457753|ref|XP_002138441.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
gi|198136092|gb|EDY68999.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 113/165 (68%), Gaps = 5/165 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG----ENMK-REDLVINKA 59
+EE+ +++RIR+TV+QM DRGY V E++ + + F FG EN R D+ + A
Sbjct: 4 EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP E KVG+K +K Y RM+ E+++RAI+VVQ ++TP AR + E++
Sbjct: 64 HNDDPTDQMFVFFPQEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKET 164
K+ LE F EAEL+ NI E+ VPEH V+T +EK+ LL RY +KE+
Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKLKES 168
>gi|195150967|ref|XP_002016421.1| GL10501 [Drosophila persimilis]
gi|194110268|gb|EDW32311.1| GL10501 [Drosophila persimilis]
Length = 210
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 114/165 (69%), Gaps = 5/165 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG----ENMK-REDLVINKA 59
+EE+ +++RIR+TV+QM DRGY V E++ + + F FG EN R D+ + A
Sbjct: 4 EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+K +K Y RM+ E+++RAI+VVQ ++TP AR + E++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKET 164
K+ LE F EAEL+ NI E+ VPEH V+T +EK+ LL RY ++E+
Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKLRES 168
>gi|302683883|ref|XP_003031622.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
gi|300105315|gb|EFI96719.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
Length = 210
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 112/166 (67%), Gaps = 3/166 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE---NMKREDLVINKALR 61
D+E+ RL+++ RT+ ++++DRG+ V D+EIN+S + F +++ ++ R L R
Sbjct: 6 DDEVPRLWKVNRTIHELVKDRGFQVADYEINLSLDDFKSQYASQSRSVDRNQLNFFTNHR 65
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D++DQI+VFF DE+ VGVKTM+ ++ + + R I++ N+TP AR I + +++
Sbjct: 66 DDTTDQIFVFFSDERSVGVKTMRKLLGILEEKGIRRGIIIFPGNMTPAARKVIVAMQSQY 125
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LE F EA+LLVNI H LVP+H VL EEK+ LL+RY +KETQ+
Sbjct: 126 RLEEFSEADLLVNITHHTLVPQHIVLKPEEKRELLERYRLKETQLP 171
>gi|149034606|gb|EDL89343.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034607|gb|EDL89344.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034608|gb|EDL89345.1| rCG29511, isoform CRA_a [Rattus norvegicus]
Length = 202
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 5/156 (3%)
Query: 17 TVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVF 71
+ Q+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VF
Sbjct: 8 SASQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 67
Query: 72 FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAEL 131
FP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + EL
Sbjct: 68 FPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQEL 127
Query: 132 LVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
L+NI EH LVPEH V+T EE LL RY ++E+Q+
Sbjct: 128 LINITEHELVPEHVVMTKEEVTELLARYKLRESQLP 163
>gi|397485347|ref|XP_003813812.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan paniscus]
Length = 256
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 5/154 (3%)
Query: 19 MQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFP 73
+Q+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP
Sbjct: 64 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 123
Query: 74 DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLV 133
+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+
Sbjct: 124 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 183
Query: 134 NIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 184 NITEHELVPEHVVMTKEEVTELLARYKLRENQLP 217
>gi|281341350|gb|EFB16934.1| hypothetical protein PANDA_012732 [Ailuropoda melanoleuca]
Length = 193
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 5/154 (3%)
Query: 19 MQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFP 73
+Q+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP
Sbjct: 1 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 60
Query: 74 DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLV 133
+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+
Sbjct: 61 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 120
Query: 134 NIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 121 NITEHELVPEHVVMTKEEVTELLARYKLRENQLP 154
>gi|339233930|ref|XP_003382082.1| retinol dehydrogenase 12 [Trichinella spiralis]
gi|316979012|gb|EFV61880.1| retinol dehydrogenase 12 [Trichinella spiralis]
Length = 508
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 112/171 (65%), Gaps = 5/171 (2%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
M D EI RL++IR+ QM RDRG+ V +E++ + E F+ ++G+ R DL
Sbjct: 1 MAEDDREIFRLWKIRQNAFQMCRDRGFLVTSYELDQNFEDFVRQYGDRPSEGKPARSDLS 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
+ D+++ ++V+F DE+KVG+KT+K R++SEN+ RAI++VQ+ +T AR +
Sbjct: 61 FLVSHEEDAAENLFVYFADERKVGIKTIKNVCLRLQSENMSRAIMIVQEPMTAIARHSVA 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++S K+ LE F EAEL+VNI H LVP H +++++EK LL RY +KE Q+
Sbjct: 121 DLSPKYKLEQFLEAELMVNIIRHELVPRHVIMSSKEKDELLDRYKIKEHQL 171
>gi|328770744|gb|EGF80785.1| hypothetical protein BATDEDRAFT_88106 [Batrachochytrium
dendrobatidis JAM81]
Length = 207
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 108/164 (65%), Gaps = 2/164 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF--GENMKREDLVINKALRN 62
D E+ +L+R+ RT+ +M+ RGY V E+ MS + F + G + R+ L +
Sbjct: 4 DREVSKLWRVYRTIHEMVSHRGYLVSKAELEMSLDDFRYTYTKGGIIDRQGLTFLVQHSS 63
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+DQ+ VFF D+ VG+K +K RM S+++ + IL+ +++LTP A +QE++ K+
Sbjct: 64 SENDQLLVFFTDDDSVGIKPIKKICERMISQSIMKGILIYKKSLTPSANKVVQEMAPKYQ 123
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LE+FQE+ELLVNI +H LVP H+VLT +EKKTLL RY +KETQ+
Sbjct: 124 LELFQESELLVNITQHTLVPVHEVLTVDEKKTLLARYRLKETQL 167
>gi|405118149|gb|AFR92924.1| DNA-directed RNA polymerase II 24 kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 255
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 111/165 (67%), Gaps = 2/165 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE--NMKREDLVINKALR 61
++ E+ RL+R+ RTV +M+RDRGY + D+EIN+S E+F + G ++ R ++ +
Sbjct: 51 ANRELARLWRVSRTVHEMVRDRGYMLADYEINVSFEEFKDRHGATGSVDRSNMSFDAIHE 110
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D++D+I+V+F ++ V +MKT+ M R I++ + ++P A+ +QE+ +++
Sbjct: 111 SDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPAAKKTLQEMQSEY 170
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
HLE F E++LLVNI +H LVP+H V+ EEK L+KRY +KETQ+
Sbjct: 171 HLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQL 215
>gi|328865416|gb|EGG13802.1| RapGAP/RanGAP domain-containing protein [Dictyostelium
fasciculatum]
Length = 1144
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 109/165 (66%), Gaps = 4/165 (2%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF-GENMKREDLVINKALRNDS 64
+E RL+ IR+T++QML DRGY + + E+ ++KE F F N RE L + ++D+
Sbjct: 2 DEGTRLYHIRKTILQMLSDRGYMITNSELELTKEDFKKDFTAHNNSREHLNSSYNKKDDA 61
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVF-RAILVVQQNLTPFARTCIQEIS--AKF 121
+D+I+ FFP + KVGV ++ + ++MK + RAI++VQ NLT FA+ + E S K
Sbjct: 62 ADRIFTFFPADVKVGVTPIRKFVDQMKGPHGGNRAIIIVQSNLTAFAKQALSEFSQAKKI 121
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LE F EAELLVNI H LVP+H +LT EEKK LL RY +KETQ+
Sbjct: 122 VLEQFNEAELLVNITHHQLVPKHILLTKEEKKELLTRYKMKETQL 166
>gi|290462657|gb|ADD24376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Lepeophtheirus salmonis]
Length = 210
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 102/149 (68%), Gaps = 5/149 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINKA 59
D EI +L+++R+TVM + DRGY V E++ + EQF +FG+ R DL I A
Sbjct: 4 DAEIYKLWKVRKTVMCLCHDRGYLVTQDELDQTIEQFKIQFGDKPSEKQPSRNDLTILVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP++ K+G+K ++TY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEDPKIGIKHIRTYCKRMQEENITRAIIVVQAGMTPSAKQSLMDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLT 148
K+ LE F E+ELL+N+ EH LVPEH V+T
Sbjct: 124 KYILEQFLESELLINLTEHDLVPEHVVMT 152
>gi|409078308|gb|EKM78671.1| hypothetical protein AGABI1DRAFT_114282, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426199299|gb|EKV49224.1| hypothetical protein AGABI2DRAFT_191302, partial [Agaricus bisporus
var. bisporus H97]
Length = 208
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 109/165 (66%), Gaps = 3/165 (1%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---MKREDLVINKALRN 62
+E +L+++ RT+ +++RDRG+ V D EI+M + F ++ N + R L R
Sbjct: 5 DETAKLWKVNRTIHELVRDRGFLVSDEEIHMDLQHFRDQYANNSGMVDRNQLNFYTTSRA 64
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ +DQI+V+F DE+ VGVKTM+ + ++ +++ R I+V N+TP AR I +SA++
Sbjct: 65 NPTDQIFVYFTDERSVGVKTMRKLLSILEEKSIQRGIIVFPGNMTPSARKVIVAMSAQYR 124
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LE F EA+LLVNI H LVP H+VLT EEKK LL++Y +KETQ+
Sbjct: 125 LEEFSEADLLVNIVHHTLVPRHEVLTPEEKKVLLEKYRLKETQLP 169
>gi|339250892|ref|XP_003374431.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
gi|316969258|gb|EFV53386.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
Length = 211
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 110/172 (63%), Gaps = 5/172 (2%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
M D EI RL++IR QM RDRG+ V E++ + E F+ ++G+ R DL
Sbjct: 1 MAEDDREIFRLWKIRHNAFQMCRDRGFLVTSNELDQNFEDFVRQYGDRPSEGKPARSDLS 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
+ D+++ ++V+F DE+KVG+KT+K R++SEN+ RAI++VQ+ +T AR +
Sbjct: 61 FLVSHEEDAAENLFVYFADEKKVGIKTIKNVCLRLQSENMSRAIMIVQEPMTAIARHSVA 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
++S K+ LE F EAEL+VNI H LVP H +++++EK LL RY +KE Q+
Sbjct: 121 DLSPKYRLEQFLEAELMVNIIRHELVPRHVIMSSKEKDELLDRYKIKEHQLP 172
>gi|353236892|emb|CCA68877.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Piriformospora indica DSM 11827]
Length = 211
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 107/167 (64%), Gaps = 4/167 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQF---IAKFGENMKREDLVINKAL 60
+D + RL+++ RT+ +++RDRGY V D EINM+ ++F A+ G + R L L
Sbjct: 7 ADLAVSRLWKVNRTIHELVRDRGYAVADEEINMTLDEFKQQFARAGSVVDRASLGFWAHL 66
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
RND + IYV+F DE+ VGV+ MK + +N+ R I++ LTP AR + + +
Sbjct: 67 RNDPATSIYVYFCDERSVGVQHMKKLLGILDEKNIVRGIIIYPNVLTPAARKVLTGMP-Q 125
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ LE F E ELLVNI +H LVP+H++L+ E+K+ LL+RY +KETQ+
Sbjct: 126 YQLEEFAETELLVNITQHTLVPQHEILSPEQKRLLLERYRLKETQLP 172
>gi|58259413|ref|XP_567119.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134107497|ref|XP_777633.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260327|gb|EAL22986.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223256|gb|AAW41300.1| DNA-directed RNA polymerases ii 24 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 221
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 112/177 (63%), Gaps = 14/177 (7%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG-----ENMK-------- 50
++ E+ RL+R+ RTV +M+RDRGY + D+EIN+S E+F + G E MK
Sbjct: 5 ANRELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSS 64
Query: 51 -REDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPF 109
R ++ + ND++D+I+V+F ++ V +MKT+ M R I++ + ++P
Sbjct: 65 SRSNMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPA 124
Query: 110 ARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
A+ +QE+ +++HLE F E++LLVNI +H LVP+H V+ EEK L+KRY +KETQ+
Sbjct: 125 AKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQL 181
>gi|449681257|ref|XP_002162780.2| PREDICTED: uncharacterized protein LOC100208454, partial [Hydra
magnipapillata]
Length = 383
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 102/152 (67%), Gaps = 5/152 (3%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINKALRNDSSDQIYVFFPDE 75
M DR Y V E++ + EQFI +FG+ + R D+ + A +D +DQ++VFFP+E
Sbjct: 1 MCHDRRYLVTQDELDQTLEQFIEQFGDRPSEGHPSRGDISVLVAHNDDPTDQMFVFFPEE 60
Query: 76 QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNI 135
+KVG+KT+K Y RM+ E + RAI+VVQ +TP A+ + +++ K+ LE F EAELL+N+
Sbjct: 61 EKVGIKTIKQYCTRMQEEGINRAIIVVQTGMTPSAKQALVDMAPKYILEQFLEAELLINV 120
Query: 136 KEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
EH LVPEH VL+ EEK LL RY +K+ Q+
Sbjct: 121 TEHNLVPEHVVLSPEEKAELLTRYKLKDHQLP 152
>gi|225718552|gb|ACO15122.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
clemensi]
Length = 210
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 104/152 (68%), Gaps = 6/152 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVI 56
+ DE E +L+++R+TVM + DRGY V E++ +++QF +FG+ R DL I
Sbjct: 1 MDDESETYKLWKVRKTVMSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTI 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP++ K+GVK ++TY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEDPKIGVKHIRTYCKRMQEENITRAIIVVQAGMTPSAKQSLMD 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLT 148
++ K+ LE F E+ELL+N+ EH LVPEH V+T
Sbjct: 121 MAPKYILEQFLESELLINLTEHDLVPEHVVMT 152
>gi|336370755|gb|EGN99095.1| hypothetical protein SERLA73DRAFT_181909 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383518|gb|EGO24667.1| hypothetical protein SERLADRAFT_468322 [Serpula lacrymans var.
lacrymans S7.9]
Length = 206
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 111/165 (67%), Gaps = 3/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALR 61
++E +L+++ RT+ ++++DRG+ V D EI+M F + + G ++ R L R
Sbjct: 2 EDETAKLWKVNRTIHELVKDRGFAVSDDEIHMDLVTFRSHYANNGGSVDRNQLNFFTNSR 61
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+ +DQI+VFF DE+ VGVKTM+ ++ +++ R I+V N+TP AR I ++A++
Sbjct: 62 TNPTDQIFVFFSDEKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIAAMAAQY 121
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LE F E++LLVNI H LVP+H+VLT EEKKTLL++Y +KETQ+
Sbjct: 122 RLEEFSESDLLVNITHHTLVPKHEVLTPEEKKTLLEKYRLKETQL 166
>gi|331224607|ref|XP_003324975.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303965|gb|EFP80556.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 204
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 108/163 (66%), Gaps = 3/163 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
D E+ RL R+ RT+ +++RDRGY V D EIN+S ++F K + + + +N A N
Sbjct: 4 DREVSRLHRVNRTIKELVRDRGYEVSDAEINVSLDEF--KASDPISNKSTRLNFAAINPE 61
Query: 65 SDQ-IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
++Q IYV++ DE+ VG+KTM+ + + + + + IL+ Q +TP A I ++ +F L
Sbjct: 62 TNQGIYVYYSDEKSVGIKTMRKFISILDEKKLESGILIYSQAMTPSANKVIASMAQQFTL 121
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
E FQEAELLVNI H++VP+H+V+ EEKK LL RY +K+TQ+
Sbjct: 122 EAFQEAELLVNITRHIMVPKHEVMKPEEKKALLARYRLKDTQL 164
>gi|156396586|ref|XP_001637474.1| predicted protein [Nematostella vectensis]
gi|156224586|gb|EDO45411.1| predicted protein [Nematostella vectensis]
Length = 207
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 110/163 (67%), Gaps = 8/163 (4%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKALRNDS 64
+ +RIR+TVMQ+ G + D E++ + EQF +FG+ R DL I A +D
Sbjct: 9 KFWRIRKTVMQVCN--GLILRD-ELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHNDDP 65
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
+DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQ +TP A+ + +++ K+ LE
Sbjct: 66 TDQMFVFFPEEPKVGIKTIKQYCQRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILE 125
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F EAEL++NI EH LVPEH ++T +EK+ LL RY +KE Q+
Sbjct: 126 QFVEAELMINITEHELVPEHVLMTPDEKQELLLRYKLKEHQLP 168
>gi|393242192|gb|EJD49711.1| DNA-directed RNA polymerase I [Auricularia delicata TFB-10046 SS5]
Length = 209
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 110/165 (66%), Gaps = 2/165 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--MKREDLVINKALR 61
++EE+ RL+++ RT+ +M+RDRGY V + E NMS EQF A+ N + R L
Sbjct: 5 TEEELVRLWKVSRTIHEMVRDRGYQVSEEETNMSLEQFRAQHTTNGTVNRTTLTFFTHHA 64
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
D +DQ++VFF +++ V +KTM+ + + ++ + + R I+V +TP AR I +S +
Sbjct: 65 KDPNDQLFVFFCEDKNVSIKTMRKFLDVLQQKGIQRGIIVFSGTMTPSARKVITGMSQDY 124
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LE F EA+L+VNI +H+LVP+H+V+T E KK LL+RY +KETQ+
Sbjct: 125 KLEEFAEADLIVNITQHILVPKHEVMTTEAKKALLERYRLKETQL 169
>gi|225711614|gb|ACO11653.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
rogercresseyi]
Length = 210
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 99/144 (68%), Gaps = 5/144 (3%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINKALRNDS 64
+L+++R+TVM + DRGY V E++ + +QF +FG+ R DL I A +D
Sbjct: 9 KLWKVRKTVMSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVAHNDDP 68
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
+DQ++VFFPD+ K+G+K ++TY RM+ EN+ RAI++VQ +TP A+ + +++ K+ LE
Sbjct: 69 TDQMFVFFPDDPKIGIKHIRTYCKRMQEENITRAIILVQSGMTPSAKQSLMDMAPKYILE 128
Query: 125 VFQEAELLVNIKEHVLVPEHQVLT 148
F E+ELL+N+ EH LVPEH V+T
Sbjct: 129 QFLESELLINLTEHDLVPEHVVMT 152
>gi|402589264|gb|EJW83196.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 191
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 100/152 (65%), Gaps = 5/152 (3%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINKALRNDSSDQIYVFFPDE 75
M DRGY V E++ + E F FG+ + R +L + A +D +DQ++VFFP++
Sbjct: 1 MCHDRGYLVTQEELDQTLENFKETFGDKPSERHPSRNELTVLVAHNDDPTDQMFVFFPED 60
Query: 76 QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNI 135
K+G+KT+K +M+ + + RAI+VVQ +TP A+ I +++ K+ LE F EAEL+VNI
Sbjct: 61 SKIGIKTIKAICQQMQEQAITRAIIVVQTGMTPSAKQAIADMAPKYTLEQFLEAELMVNI 120
Query: 136 KEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
EH LVPEH V+TNEEK LL RY +K+TQ+
Sbjct: 121 TEHELVPEHVVMTNEEKNELLGRYKLKDTQLP 152
>gi|170098869|ref|XP_001880653.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644178|gb|EDR08428.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 208
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 112/168 (66%), Gaps = 4/168 (2%)
Query: 3 LSD-EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---MKREDLVINK 58
+SD +E +L+++ RT+ ++++DRG+ V D EI+M ++F + + N + R L
Sbjct: 1 MSDVDETAKLWKVNRTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGVVDRNQLNFYT 60
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
R +S+DQI+VFF +E+ VGVKTM+ ++ +++ R I+V N+TP AR I ++
Sbjct: 61 TSRTNSTDQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIVAMA 120
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ LE F EA+LLVNI H LVP H VL+ +EKKTLL++Y +KETQ+
Sbjct: 121 QQYRLEEFSEADLLVNIVHHTLVPRHDVLSPDEKKTLLEKYRLKETQL 168
>gi|15242916|ref|NP_200606.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
gi|9758367|dbj|BAB08868.1| RNA polymerase I, II and III 24.3 kDa subunit-like protein
[Arabidopsis thaliana]
gi|332009598|gb|AED96981.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
Length = 210
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 113/171 (66%), Gaps = 4/171 (2%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKR---EDLVIN 57
M+ D+EI R+F++RRTV+QMLRDRGY + + ++N+ +E+F+ +F + M + E L ++
Sbjct: 1 MSDMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVS 60
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTN-RMKSENVFRAILVVQQNLTPFARTCIQE 116
+ +D+IYVF+P+ KVGV +K +M+ + V R I+VV +T AR + E
Sbjct: 61 ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
++ +EVF+EAEL+ NI EH LV ++ VL ++ KK LL YTV++TQ+
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLP 171
>gi|168036467|ref|XP_001770728.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677946|gb|EDQ64410.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 211
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 106/159 (66%), Gaps = 7/159 (4%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
D + L+++R+ V++M+RD Y V D E+ ++ EQF K+ E+ K+EDL+I K +++
Sbjct: 7 DRQSTHLYQVRKKVLEMMRDLDYVVADNELTLTNEQFCEKYREDPKQEDLMILKPKSSNN 66
Query: 65 SDQIYVFFP---DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
++ P + +VG+KT+KT RMK ENV RA+ VVQQ++TP ++ I + K+
Sbjct: 67 AEH----GPKTGGKGRVGLKTIKTCKKRMKRENVPRAVFVVQQHITPLSKQYISRKAQKY 122
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYT 160
HLEVF E E LVNI E LVP H++LT EEK TLL+RYT
Sbjct: 123 HLEVFLEPEFLVNITECYLVPLHEILTPEEKNTLLERYT 161
>gi|297796715|ref|XP_002866242.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
gi|297312077|gb|EFH42501.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
Length = 213
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 113/174 (64%), Gaps = 7/174 (4%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK------REDL 54
M+ D+EI RLF++RRTV+QMLRDRGY + + ++N+ +E+F+ +F + M +E L
Sbjct: 1 MSDLDDEITRLFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKPMNNMNKVNKEAL 60
Query: 55 VINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTN-RMKSENVFRAILVVQQNLTPFARTC 113
+ + +D+IYVF+P+ KVGV +K +M+ + V R I+VV +T AR
Sbjct: 61 FVAANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVPRGIVVVPMPITGPARMA 120
Query: 114 IQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
I E++ +EVF+EAEL+ NI EH L+ ++ VL ++ KK LLK YTV++TQ+
Sbjct: 121 ISELNKILTIEVFEEAELVTNITEHKLINKYYVLDDQAKKELLKTYTVQDTQLP 174
>gi|299749820|ref|XP_001836357.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
gi|298408613|gb|EAU85541.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
Length = 208
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 105/165 (63%), Gaps = 3/165 (1%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK---REDLVINKALRN 62
+E RL+++ +T+ ++++DRG+ V D EINMS E+F +G NM R L R
Sbjct: 5 DETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYTHHRL 64
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ SDQI+V+F +E VGVK M+ M+ + + R I++ +T AR I +++ +
Sbjct: 65 NPSDQIFVYFTEEPNVGVKAMRKLLGIMEEKAIQRGIIIFPATMTSSARKVISAMASTYR 124
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LE F EA+LLVNI H LVP H+VL+ EEKKTLL+RY +K+TQ+
Sbjct: 125 LEEFAEADLLVNITHHTLVPRHEVLSPEEKKTLLERYRLKDTQLP 169
>gi|149034610|gb|EDL89347.1| rCG29511, isoform CRA_c [Rattus norvegicus]
Length = 146
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 98/144 (68%), Gaps = 5/144 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVFQEAELLVNIKEHVLVP 142
K+ LE F + ELL+NI EH P
Sbjct: 123 PKYVLEQFLQQELLINITEHEQAP 146
>gi|198471708|ref|XP_002133816.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
gi|198146041|gb|EDY72443.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
Length = 320
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 110/170 (64%), Gaps = 6/170 (3%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG-----ENMKREDLVI 56
++DE E+ +L+ IR+T+ +M DRGY V E++ + EQF FG ++ R DL +
Sbjct: 1 MNDEAEVYKLWHIRKTLFEMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTM 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
+ +D +++ VFFP+E KV VKT+K Y +RM+ E + RAILVV+ LTP A+ I
Sbjct: 61 LLSHADDPKNRMLVFFPEEPKVAVKTIKAYAHRMEGEGIHRAILVVRDCLTPPAKQSIMA 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ + +E F E+EL +N+ +H LVP+H VL+ EKK L + Y +KE+Q+
Sbjct: 121 MAPLYIMEQFLESELTINVTKHELVPQHVVLSEVEKKQLFRCYRLKESQM 170
>gi|237834761|ref|XP_002366678.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|211964342|gb|EEA99537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|221486036|gb|EEE24306.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
GT1]
gi|221503532|gb|EEE29223.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
VEG]
Length = 205
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 104/165 (63%), Gaps = 2/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-MKREDLVINKALRND 63
++ +RLFR R+T ML+DRGY V E N S F+ +F EN R +++ + + D
Sbjct: 2 EDSTRRLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKVD 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+++ V+F DE +K GVK ++ T RM+ N+ RAILV Q LT FAR I E + +
Sbjct: 62 PDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRHI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F E+ELLVNI +H LVP+H LTN+EK+ LL RY VKE Q+
Sbjct: 122 IENFMESELLVNITKHELVPKHVPLTNDEKQNLLNRYRVKEIQLP 166
>gi|351714028|gb|EHB16947.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Heterocephalus glaber]
Length = 292
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 98/139 (70%), Gaps = 5/139 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F ++FG+ + +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGHPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEH 138
K+ LE F + ELL+NI EH
Sbjct: 124 KYILEQFLQQELLINITEH 142
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 68/95 (71%)
Query: 73 PDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELL 132
P+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL
Sbjct: 159 PEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELL 218
Query: 133 VNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 219 INITEHELVPEHVVMTKEEVTELLARYKLRENQLP 253
>gi|390594286|gb|EIN03698.1| DNA-directed RNA polymerase RPB5 subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 208
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 108/169 (63%), Gaps = 4/169 (2%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQF---IAKFGENMKREDLVIN 57
M +DE K L+++ RT+ ++++DRG+ V D EI M F A G ++ R L
Sbjct: 1 MADADESAK-LWKVNRTIHELVKDRGFQVSDDEIQMDLATFRQAYANNGGSVDRNQLNFF 59
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
R + +DQI+VFF +E+ VGVKTM+ ++ +++ R I++ N+TP AR I +
Sbjct: 60 TNSRANPADQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIIFPGNMTPSARKVIVAM 119
Query: 118 SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
SA+F LE F E++LLVNI H LVP H+VLT EEK+ LL++Y +KETQ+
Sbjct: 120 SAQFRLEEFSESDLLVNITHHTLVPRHEVLTPEEKRNLLEKYRLKETQL 168
>gi|432101146|gb|ELK29430.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Myotis
davidii]
Length = 203
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 97/139 (69%), Gaps = 5/139 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEH 138
K+ LE F + ELL+NI EH
Sbjct: 124 KYILEQFLQQELLINITEH 142
>gi|330803783|ref|XP_003289882.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325080041|gb|EGC33614.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 196
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 102/164 (62%), Gaps = 10/164 (6%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E+ RL +IR+TV+QML DRGY + + ++ R++L I ++D +
Sbjct: 2 EDPVRLTQIRKTVIQMLSDRGYITSAIDAEVPRD--------ITNRDELKIYCVKKDDPT 53
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS--AKFHL 123
+ +YVFFP+ KVGV +K Y MKS RAI+VVQQN+TPFA+ + EIS K L
Sbjct: 54 ESVYVFFPEVPKVGVTHIKKYVELMKSRQTNRAIIVVQQNITPFAKQALVEISQDKKIVL 113
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
E F EAELLVNI H LVP+H +LT EEK LL RY +KE+Q+
Sbjct: 114 EQFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLP 157
>gi|384497437|gb|EIE87928.1| hypothetical protein RO3G_12639 [Rhizopus delemar RA 99-880]
Length = 188
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGE--NMKREDLVINKALRNDSSDQIYVFFPDEQKV 78
M+ DRGY V E++M E F F ++ R+ L ++D +DQ+ VFFP + V
Sbjct: 1 MVHDRGYLVSQSELDMDLESFKRTFAPSGDVDRDQLTFVVQKKDDPTDQLLVFFPKDPSV 60
Query: 79 GVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEH 138
GVK ++ Y RM + + + I + Q+++T A IQ++ +K LE FQE ELLVNI H
Sbjct: 61 GVKPLRVYVERMAQQQIPKGICIYQKSMTSSANKVIQQLPSKHTLESFQENELLVNITHH 120
Query: 139 VLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
VLVP+H+VLT EEK TLL+RY +KETQ+
Sbjct: 121 VLVPKHEVLTAEEKSTLLQRYRLKETQLP 149
>gi|281202322|gb|EFA76527.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 288
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 110/190 (57%), Gaps = 31/190 (16%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
+E+ RL++I++T++QML DRGY + +++ SK++F F RED+ R D++
Sbjct: 2 DEVTRLYQIQKTILQMLHDRGYMITPVQLDQSKDEFRRNFKS---REDMNSIHTKREDAA 58
Query: 66 DQIYVFFPDEQKVGVKTMKT--------------------------YTNRMKSENVFRAI 99
D+I++FFP++ KVGVK +K Y RMK RAI
Sbjct: 59 DKIFIFFPNDPKVGVKPIKEVISTLIKPTNHLSIYLSTHNQTNTYRYVKRMKEIGGTRAI 118
Query: 100 LVVQQNLTPFARTCIQEISA--KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLK 157
+VVQQ +TPFA+ + E S + LE F EAELLVNI H LVP+H +L+ EEK LL
Sbjct: 119 IVVQQVMTPFAKQALAEFSQNREIVLENFNEAELLVNITHHQLVPKHILLSKEEKSELLA 178
Query: 158 RYTVKETQVS 167
+Y +KETQ+
Sbjct: 179 KYKMKETQLP 188
>gi|294880824|ref|XP_002769160.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239872330|gb|EER01878.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 168
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 95/139 (68%), Gaps = 5/139 (3%)
Query: 34 INMSKEQFIAKFGE----NMKREDLVINKALRNDSSDQIYVFFPDEQK-VGVKTMKTYTN 88
+N +KE F ++ E R DL+I + ++D SDQ+ VFFPDE K VGVK ++T
Sbjct: 2 LNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLAL 61
Query: 89 RMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLT 148
+M+ + + RAILVVQQ LT FA+T IQE S + +EVF E+EL+VNI H LVPEH+ LT
Sbjct: 62 KMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLT 121
Query: 149 NEEKKTLLKRYTVKETQVS 167
EEK+ LL+RY VKE Q+
Sbjct: 122 AEEKRLLLERYKVKENQLP 140
>gi|380800089|gb|AFE71920.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1, partial
[Macaca mulatta]
Length = 181
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 96/140 (68%), Gaps = 5/140 (3%)
Query: 33 EINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYT 87
E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y
Sbjct: 3 ELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYC 62
Query: 88 NRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVL 147
RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPEH V+
Sbjct: 63 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 122
Query: 148 TNEEKKTLLKRYTVKETQVS 167
T EE LL RY ++E Q+
Sbjct: 123 TKEEVTELLARYKLRENQLP 142
>gi|209738396|gb|ACI70067.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 159
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 95/139 (68%), Gaps = 5/139 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
DEE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL + A
Sbjct: 4 DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA +VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEH 138
K+ LE F + ELL+NI EH
Sbjct: 124 KYILEQFLQQELLINITEH 142
>gi|291000790|ref|XP_002682962.1| predicted protein [Naegleria gruberi]
gi|284096590|gb|EFC50218.1| predicted protein [Naegleria gruberi]
Length = 229
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 23/189 (12%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN------------ 48
M ++ E RL+RIR+TV+QML RGY V + E NM +F +KFG
Sbjct: 1 MNNANSESYRLWRIRKTVLQMLDARGYMVLESEKNMDLAEFESKFGTGPNNVSQSGQARG 60
Query: 49 ---MKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVV--- 102
+ R+ L I ++ +D S+ I+VFFP + +G+K +K Y ++MK NV RAILV+
Sbjct: 61 YTTIGRDRLSIVTSMADDPSEMIFVFFPATKAIGMKQIKDYHSKMKDNNVKRAILVLRPA 120
Query: 103 ----QQNLTPFARTCIQEISA-KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLK 157
Q++L+ A+ I+ + A + LE F+E ELLVNI EHVLVP+H L + + LL+
Sbjct: 121 DSFQQKDLSSQAKRAIEALQAIGYILETFKETELLVNITEHVLVPQHVPLNKAQHEELLQ 180
Query: 158 RYTVKETQV 166
RY +KETQ+
Sbjct: 181 RYKLKETQL 189
>gi|403418276|emb|CCM04976.1| predicted protein [Fibroporia radiculosa]
Length = 207
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 104/164 (63%), Gaps = 4/164 (2%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK---REDLVINKALRN 62
+E RL+++ RT+ ++++DRG+ V D EINM F + + N+ R L +N
Sbjct: 5 DESARLWKVNRTIHELVKDRGFQVSDDEINMDLATFRSHYASNLGSVDRSQLNFFTNHKN 64
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ QI+VFF DE+ VGVKTM+ ++ +N+ + I+V N+TP AR I ++ F
Sbjct: 65 NPMTQIFVFFSDEKSVGVKTMRKMLTILEEKNIMQGIIVFPGNMTPSARKVISAMT-NFA 123
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LE F EA+LLVNI H LVP+H+VL+ +EKK LL+ Y +KETQ+
Sbjct: 124 LEEFAEADLLVNITHHTLVPKHEVLSPKEKKELLETYRLKETQL 167
>gi|156089419|ref|XP_001612116.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
gi|154799370|gb|EDO08548.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
Length = 205
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 107/165 (64%), Gaps = 2/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG-ENMKREDLVINKALRND 63
D+E RLFR RRT +ML DRGYF+ + E + +F A++ + R +++ +L+ D
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPNQERLETFAEFKARYELYDRVRSKMLLVASLKTD 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
++ V+F DE +K GVK ++ T +M+ ++ RAILV Q LTPFA+ I E + +
Sbjct: 62 KDAKLLVYFADETKKTGVKPIRELTEKMEDHDIHRAILVTQNVLTPFAKDAILEAAPRNI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F E ELLVNI +H LVP+H LT +EK+TLL+RY VKE+Q+
Sbjct: 122 IENFLETELLVNITKHELVPKHIPLTADEKQTLLQRYKVKESQIP 166
>gi|84997627|ref|XP_953535.1| DNA-directed RNA polymerase, subunit (RPB5 homologue) [Theileria
annulata strain Ankara]
gi|65304531|emb|CAI76910.1| DNA-directed RNA polymerase, subunit (RPB5 homologue), putative
[Theileria annulata]
Length = 205
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
D+E RLFR RRT +ML DRGYF+ E + +F A++ K R +++ +LR
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYEMYDKVRSKMLLVASLRTA 61
Query: 64 SSDQIYVFFPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ +++ V+F DE+K GVK ++ T RM+ ++ RAILV Q LTPFA+ I E K
Sbjct: 62 AENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F E ELLVNI +H LVP+H LT EEK+ LL++Y VKE+Q+
Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIP 166
>gi|388583908|gb|EIM24209.1| RPB5 subunit of DNA-directed RNA polymerase [Wallemia sebi CBS
633.66]
Length = 207
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Query: 3 LSDEE-IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--MKREDLVINKA 59
+ DE+ I +L+++ RT +M++DRG+ V EI + +F + N + R L +
Sbjct: 1 MEDEKLISKLWKVSRTAHEMVQDRGFAVSQQEIEIPYAEFKETYAGNGIIDRASLHFFAS 60
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
L ++ DQI+VFF DE +G+KTM+ + ++ + R IL+ + LTP A I E++A
Sbjct: 61 LEDNPDDQIFVFFADEPSIGIKTMRKFLTVLEERKIGRGILIYPEKLTPAANKVIAEMAA 120
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ L+ F E+EL VNI H LVP+H+VLT EEKK LL++Y +K TQ+
Sbjct: 121 DYKLQAFTESELQVNITHHQLVPQHEVLTAEEKKLLLQKYRLKPTQLP 168
>gi|409048291|gb|EKM57769.1| hypothetical protein PHACADRAFT_251606 [Phanerochaete carnosa
HHB-10118-sp]
Length = 208
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 104/165 (63%), Gaps = 3/165 (1%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK---REDLVINKALRN 62
+E +L+++ RT+ +++RDRG+ V D EI+M F + + M R L +N
Sbjct: 5 DETAKLWKVNRTIHELVRDRGFQVSDDEIHMDLATFRSLYANQMGSVDRSQLNFFTNHQN 64
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ +QI+ FF DE+ VGVKTM+ N ++ +N+ R I+V +TP AR I +++++
Sbjct: 65 NPMEQIFTFFSDEKSVGVKTMRKILNILEEKNIQRGIIVFPGIMTPSARKVIVAMASQYK 124
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LE F EA+LLVNI H LVP H VLT E+KK LL++Y +KETQ+
Sbjct: 125 LEEFSEADLLVNITHHTLVPRHDVLTPEQKKNLLEKYRLKETQLP 169
>gi|66802850|ref|XP_635268.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|60463617|gb|EAL61802.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 181
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 92/149 (61%), Gaps = 9/149 (6%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGV 80
ML DR Y + +E +E F++ RE+L + ++D +D IYVFFPD KVGV
Sbjct: 1 MLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPTDSIYVFFPDTPKVGV 53
Query: 81 KTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS--AKFHLEVFQEAELLVNIKEH 138
+K Y + MK RAI+VVQQN+TPFA+ + E S K LE F EAELLVNI H
Sbjct: 54 TQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHH 113
Query: 139 VLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LVP+H +LT EEK LL RY +KE+Q+
Sbjct: 114 QLVPKHILLTKEEKLELLTRYKMKESQLP 142
>gi|389742519|gb|EIM83705.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum FP-91666
SS1]
Length = 209
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 102/165 (61%), Gaps = 4/165 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALR 61
D E L+++ RT+ ++++DRGY V D EI+M F + + G ++ R L LR
Sbjct: 6 DSEAATLWKVNRTIHELVKDRGYQVADDEIHMDLTTFKSHYANSGGSVDRNQLNFFTNLR 65
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+ + I+VFF DE+ VGVKTM+ M +N+ R I++ +TP AR I + A+F
Sbjct: 66 VNVEEHIFVFFSDEKSVGVKTMRKLLQIMTEKNIRRGIIIFPGIMTPAARKVIVSM-AEF 124
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E F EA+LLVNI H LVP H VLT EEKK LL+RY +KETQ+
Sbjct: 125 KVEEFSEADLLVNITHHKLVPRHDVLTTEEKKMLLERYRLKETQL 169
>gi|399218319|emb|CCF75206.1| unnamed protein product [Babesia microti strain RI]
Length = 212
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 109/178 (61%), Gaps = 18/178 (10%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVIN 57
+ D E+ RLFR RRT +ML DRGYF+ E K + +++F + R +++
Sbjct: 1 MEDAEV-RLFRCRRTCCEMLEDRGYFIPIQE----KLEILSEFKSRYEMYDKIRSKMLLV 55
Query: 58 KALRNDSSDQIYVFFPDE-QKVGVK-------TMKTYTNRMKSENVFRAILVVQQNLTPF 109
++RND +D+I V+F DE +K GVK +++ T RM+ + RAILV Q LTPF
Sbjct: 56 ASMRNDPNDKIIVYFADETKKTGVKPIRELVPSLRRLTERMEDHGIHRAILVTQNVLTPF 115
Query: 110 ARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
A+ I E + + +E F E ELLVNI +H LVP+H LT EEK+ LL+RY VKE+Q+
Sbjct: 116 AKEAISEAAPRNIIENFMETELLVNITKHELVPKHVPLTAEEKRNLLQRYKVKESQIP 173
>gi|401882166|gb|EJT46437.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406701349|gb|EKD04497.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 195
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--MKREDLVINKALR 61
SD E+ RL+R+ +TV +M+RDRGY V D+EINMS + F +G + R + +
Sbjct: 5 SDRELARLWRVSKTVHEMIRDRGYEVADYEINMSFDDFKETYGGGGSVDRGRMAFHANHS 64
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
DS D+IYVFF E+ V T K++ + + R ++V LT A E+ +++
Sbjct: 65 RDSRDRIYVFFCAEEAVSKATYKSFVTSLDAVGAKRGLIVHGGKLTSGAAKTQNEMQSEY 124
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
HLE F+EA+LLVNI H LVP+H ++ EEK L+KRY +
Sbjct: 125 HLEDFKEADLLVNITRHFLVPKHTIMEPEEKSALIKRYAM 164
>gi|71029810|ref|XP_764548.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68351502|gb|EAN32265.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 205
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
D+E RLFR RRT +ML DRGYF+ E + +F A++ + K R +++ + R
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPVQEKLETFAEFKARYEMHEKVRSKMLLVASQRTA 61
Query: 64 SSDQIYVFFPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S +++ V+F DE+K GVK ++ T RM+ ++ RAILV Q LTPFA+ I E K
Sbjct: 62 SENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F E ELLVNI +H LVP+H LT EEK+ LL++Y VKE+Q+
Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIP 166
>gi|449543190|gb|EMD34167.1| hypothetical protein CERSUDRAFT_141708, partial [Ceriporiopsis
subvermispora B]
Length = 208
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 104/164 (63%), Gaps = 3/164 (1%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
++ +L+++ RT+ ++++DRG+ V D EINM F + + N D N +S
Sbjct: 5 DDSAKLWKVNRTIHELVKDRGFQVSDDEINMDLATFRSHYANNSGSVDRSQLNFFTNHTS 64
Query: 66 D---QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ QI+VFF DE+ VGVKTM+ ++ +N+ + ++V N+TP AR I +++++
Sbjct: 65 NPLVQIFVFFSDEKSVGVKTMRKLLGILEEKNIQQGVIVFPGNMTPSARKVIVAMASQYK 124
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LE F E++LLVNI H LVP H+VLT EEKK LL+ Y +KETQ+
Sbjct: 125 LEEFSESDLLVNITHHTLVPRHEVLTAEEKKELLETYRLKETQL 168
>gi|320168277|gb|EFW45176.1| DNA-directed RNA polymerase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 211
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 106/166 (63%), Gaps = 4/166 (2%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF--GENMK--REDLVINKALR 61
+ ++R++RI +TVMQM DR Y V E+ + E F AK G ++ RE ++ N A +
Sbjct: 7 QHLQRMYRIYQTVMQMCHDRHYIVTADELEQNLETFRAKVCTGNDLTPVRERMLCNFAYK 66
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D + I V F E KVGV ++ +M ++++ R I+VVQ LT FAR+ + E +F
Sbjct: 67 DDPTKSILVMFATEVKVGVAPIRQMIEQMSTQSIQRGIIVVQDCLTSFARSTLAEAMPQF 126
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F+EAELLVNI H LVP+H+VL++++K LLK+Y +KE Q+
Sbjct: 127 IIEEFKEAELLVNITRHTLVPKHEVLSDDDKIALLKQYKLKEAQLP 172
>gi|393221284|gb|EJD06769.1| RPB5 subunit of DNA-directed RNA polymerase [Fomitiporia
mediterranea MF3/22]
Length = 212
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 107/165 (64%), Gaps = 5/165 (3%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMS----KEQFIAKFGENMKREDLVINKALR 61
+E RL+R+ RT+ ++++DRG+ V D EI + K+QF G ++ R L
Sbjct: 9 DEAARLWRVNRTIHELIKDRGFQVSDEEIEVDLVTFKQQFANSSG-SVDRNQLNFFATHE 67
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D SD I+++F D++ VG+KTM+ ++ +++ + I++ +TP AR I ++S ++
Sbjct: 68 SDPSDHIFIYFSDQKSVGIKTMQKVCIILEEKSINKGIVIFPGTMTPSARKFIVQMSVRY 127
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LE F E++LLVNI H+LVP H+VLT EEK TLL++Y +KETQ+
Sbjct: 128 RLEEFSESDLLVNITRHILVPHHEVLTPEEKDTLLEKYRLKETQL 172
>gi|429329987|gb|AFZ81746.1| DNA-directed RNA polymerase, putative [Babesia equi]
Length = 205
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 102/165 (61%), Gaps = 2/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF-GENMKREDLVINKALRND 63
D+E RLFR RRT +ML DRGYF+ E + +F A++ + R +++ + +
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYESYDRTRSKMLLVASQKTA 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S +++ VFF DE +K GVK ++ T RM+ ++ RAILV Q LT FA+ I E S +
Sbjct: 62 SENKVLVFFADETKKTGVKPIRELTERMEDHDIHRAILVTQNVLTSFAKDAIMEASPRNI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F E ELLVNI H LVP+H LT EEK+ LL+RY VKE Q+
Sbjct: 122 IENFMETELLVNITRHELVPKHVPLTMEEKQNLLQRYKVKENQIP 166
>gi|395332226|gb|EJF64605.1| RPB5 subunit of DNA-directed RNA polymerase [Dichomitus squalens
LYAD-421 SS1]
Length = 211
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 104/164 (63%), Gaps = 3/164 (1%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE---NMKREDLVINKALRN 62
EE RL+++ RT+ ++++DRG+ V D EINM F + + + R L R+
Sbjct: 8 EESARLWKVNRTIHELVKDRGFQVADDEINMDLATFRSHYASQSGTVDRSQLNFFTNHRD 67
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ QI++FF DE+ VGVKTM+ ++ +N+ + I+V N+TP AR I +++++
Sbjct: 68 NPMLQIFIFFTDEKSVGVKTMRKLLGILEEKNIQQGIIVFPGNMTPSARKVIVAMASQYK 127
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LE F E++LLVNI H LVP H++LT E+KK LL+ Y +KETQ+
Sbjct: 128 LEEFSESDLLVNITHHTLVPRHELLTPEQKKELLETYRLKETQL 171
>gi|194693176|gb|ACF80672.1| unknown [Zea mays]
Length = 127
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 74/88 (84%)
Query: 80 VKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHV 139
+K +K Y M ENV RA+LV+QQNLTPFA++ + E+ K HLE+FQEAE+L+NIKEHV
Sbjct: 1 MKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHV 60
Query: 140 LVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LVPEHQVLTNEEKKTLL+RYT+KETQ+
Sbjct: 61 LVPEHQVLTNEEKKTLLERYTLKETQLP 88
>gi|397611881|gb|EJK61509.1| hypothetical protein THAOC_17988 [Thalassiosira oceanica]
Length = 581
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 83/106 (78%)
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D ++Q++VFFP+++KVGVK +K T+RMK E V AILV++ N+TPFA+ + E+S F
Sbjct: 437 DDDTNQLFVFFPEDEKVGVKPIKILTDRMKDEQVTNAILVLRGNITPFAKQAVAEMSDTF 496
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F+EAELLV+I EH LVPEHQVL+ EK+ LL+RY ++ETQ+
Sbjct: 497 RIEHFKEAELLVDITEHTLVPEHQVLSQNEKQELLRRYRLRETQLP 542
>gi|343424911|emb|CBQ68449.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Sporisorium reilianum SRZ2]
Length = 208
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 103/166 (62%), Gaps = 3/166 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALR 61
D E RL+R+ RT+ +++RDRGY V D EIN+ E F A++ G + R L
Sbjct: 4 DRETVRLWRVNRTIHELVRDRGYQVADDEINVDLETFKAEYAPTGGAVDRTKLNFFTEHS 63
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
++ +++VF+ E+ VGVKTM+ + + M+ ++ R I++ + +T AR I + F
Sbjct: 64 EHANQRLFVFYSMERNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTF 123
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
HLE F+EA LLVNI H LVP+H+ L +EKK LL+RY +KETQ+
Sbjct: 124 HLEDFEEAFLLVNITHHHLVPKHEPLYPQEKKELLQRYRLKETQLP 169
>gi|389584405|dbj|GAB67137.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 205
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 106/165 (64%), Gaps = 2/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ I R ++ R+T +ML DRGY + E + F +F EN K R + I + +ND
Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
++++I V+F DE +K GVK ++ T +M +++ RAILV Q LTPFAR I+E + +
Sbjct: 62 ANNKIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F + ELLVNI +H LVP+H LT++EK+ LL+RY +KE ++
Sbjct: 122 IENFLDTELLVNITKHELVPKHIPLTSDEKRNLLQRYKIKENKLP 166
>gi|221057466|ref|XP_002261241.1| DNA-directed RNA polymerase 2 [Plasmodium knowlesi strain H]
gi|194247246|emb|CAQ40646.1| DNA-directed RNA polymerase 2, putative [Plasmodium knowlesi strain
H]
Length = 205
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 104/165 (63%), Gaps = 2/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ I R ++ R+T +ML DRGY + E + F +F EN K R + I + +ND
Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYVITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S++I V+F DE +K GVK ++ T +M +++ RAILV Q LTPFAR I+E + +
Sbjct: 62 ESNKIIVYFADETKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F + ELLVNI +H LVP H LT++EK+ LL+RY +KE ++
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLP 166
>gi|443896772|dbj|GAC74115.1| hypothetical protein PANT_10d00023 [Pseudozyma antarctica T-34]
Length = 283
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 101/165 (61%), Gaps = 3/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALR 61
D E RL+R+ +T+ +++RDRGY V D EIN+ E F A++ G ++ R L
Sbjct: 79 DRETVRLWRVNKTIHELVRDRGYQVADDEINIDLESFKAEYAPTGGSVDRTKLNFFTEHS 138
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+ +++VF+ E+ VGVKTM+ + + M+ ++ R I++ +T AR I + F
Sbjct: 139 AHENQRLFVFYSMERNVGVKTMRQFISIMEERDIQRGIIIWPDKMTSAARKVIDAMRGTF 198
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
HLE F+EA LLVNI H LVP H+ L +EKK LL+RY +KETQ+
Sbjct: 199 HLEDFEEAYLLVNITHHHLVPRHEPLYPDEKKELLQRYRLKETQL 243
>gi|156101473|ref|XP_001616430.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium vivax
Sal-1]
gi|148805304|gb|EDL46703.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Plasmodium vivax]
Length = 205
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ I R ++ R+T +ML DRGY + E + F +F EN K R + I + +ND
Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
++++I V+F DE +K GVK ++ T +M +++ RAILV Q LTPFAR I+E + +
Sbjct: 62 ANNKIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F + ELLVNI +H LVP H LT++EK+ LL+RY +KE ++
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLP 166
>gi|392594893|gb|EIW84217.1| RPB5 subunit of DNA-directed RNA polymerase [Coniophora puteana
RWD-64-598 SS2]
Length = 207
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 112/167 (67%), Gaps = 3/167 (1%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKA 59
++++E +L+++ RTV ++++DRGY V D EI+M F + + G ++ R L
Sbjct: 1 MAEDETAKLWKVNRTVHELVKDRGYQVSDDEIHMDFATFKSHYANNGGSVDRNQLNFFTN 60
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+ + ++QI+++F DE+ VG+KTM+ ++ +++ RAI++ +T AR I +++
Sbjct: 61 SQENPTEQIFIYFSDERSVGIKTMRKLIAILEEKSIQRAIIIFPGAMTGAARKVIVAMAS 120
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ +E F E++LLVNI H+LVP+H+VLT E+KK LL++Y +K+TQ+
Sbjct: 121 QYRIEEFSESDLLVNITHHILVPKHEVLTPEQKKALLEKYRLKDTQL 167
>gi|449273017|gb|EMC82646.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1, partial
[Columba livia]
Length = 168
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Query: 40 QFIAKFGEN-MKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA 98
QF K E +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA
Sbjct: 1 QFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRA 60
Query: 99 ILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPEH V+T EE LL R
Sbjct: 61 LIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 120
Query: 159 YTVKETQVS 167
Y ++E Q+
Sbjct: 121 YKLRENQLP 129
>gi|392564185|gb|EIW57363.1| DNA-directed RNA polymerase RPB5 subunit [Trametes versicolor
FP-101664 SS1]
Length = 209
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 106/169 (62%), Gaps = 3/169 (1%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQF---IAKFGENMKREDLVIN 57
M+ +E +L+++ RT+ ++++DRG+ V D EINM F A ++ R L
Sbjct: 1 MSADQDESAKLWKVNRTIHELVKDRGFQVSDDEINMDLSTFRDHYANQSGSVDRSQLNFF 60
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
R++ S QI++FF DE+ VGVKTM+ ++ + + + I+V N+TP AR I +
Sbjct: 61 TNHRDNPSVQIFIFFTDEKSVGVKTMRKLLGILEEKAIQQGIIVFPGNMTPSARKVIVAM 120
Query: 118 SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ + LE F E++LLVNI H LVP+H++LT ++KK LL+ Y +KETQ+
Sbjct: 121 ASTYKLEEFSESDLLVNITHHTLVPKHELLTPQQKKELLETYRLKETQL 169
>gi|388855814|emb|CCF50598.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Ustilago hordei]
Length = 236
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 3/166 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALR 61
D E RL+R+ RT+ +++RDRGY V D EIN+ E F +++ G ++ R L
Sbjct: 4 DRETVRLWRVNRTIHELVRDRGYQVADDEINIDLETFKSEYAPTGGSVDRTKLNFFTEHS 63
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+ +++VF+ E+ VGVKTM+ + + M+ ++ R I++ + +T AR I + F
Sbjct: 64 EHENQRLFVFYSMERNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTF 123
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
HLE F+EA LLVNI H LVP+H+ L +EKK LL RY +KETQ+
Sbjct: 124 HLEDFEEAFLLVNITHHHLVPKHEPLYPQEKKELLARYRLKETQLP 169
>gi|410081459|ref|XP_003958309.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
gi|372464897|emb|CCF59174.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
Length = 215
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 102/169 (60%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED--LVINKALRND-- 63
I+RL+R +TV +M++DRGYFV D EI++S E F AK+ ++M R ++ +A ND
Sbjct: 9 IRRLWRTFKTVKEMVKDRGYFVNDEEIDLSLEDFKAKYSDSMGRPQRKMMSFQANPNDEF 68
Query: 64 -----SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
++V F DE VGVKTMK + ++ +N I + Q N+TP A + I
Sbjct: 69 LAKFPDLGSLWVEFCDEPSVGVKTMKNFVVHIQEKNYSTGIFIYQNNVTPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E FQEA L+VNI H LVP+H L+ EEKK LLKRY +KE+Q+
Sbjct: 129 PA-TIETFQEASLVVNITHHELVPKHIRLSLEEKKELLKRYRLKESQLP 176
>gi|213405090|ref|XP_002173317.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
gi|212001364|gb|EEB07024.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
Length = 211
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 1 MTLSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIA---KFGENMKREDLVI 56
M+ S+E I ++FR+ +TV Q++ DRGY V E+ ++ +QF A G N+ R L
Sbjct: 1 MSSSEERNIVKVFRVWKTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTLSF 60
Query: 57 -NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
K IYV F E VG+K M+T+ + + N IL+ N+TP A I
Sbjct: 61 YAKPPPGSDKGTIYVEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANNMTPSATKIIS 120
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ +F +E FQE++L+VNI H LVP+H +LT EEKK LL RY ++ETQ+
Sbjct: 121 TVTGQFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDRYKLRETQL 171
>gi|19114099|ref|NP_593187.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe 972h-]
gi|2500628|sp|Q09191.1|RPAB1_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPC24B
gi|256599719|pdb|3H0G|E Chain E, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599731|pdb|3H0G|Q Chain Q, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|1345439|dbj|BAA07843.1| RNA polymerase II 5th largest subunit [Schizosaccharomyces pombe]
gi|2465157|emb|CAB16886.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe]
gi|2708526|gb|AAB92515.1| Rpb5 [Schizosaccharomyces pombe]
Length = 210
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 4/170 (2%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIA---KFGENMKREDLVIN 57
M+ ++ I R+FR +T Q++ DRGY V E++++ +QF A G N+ R L
Sbjct: 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFY 60
Query: 58 KALRNDSS-DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
NDS+ IY+ F E VG+K M+T+ + + N IL+ ++TP A I
Sbjct: 61 AKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIAT 120
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ +F +E FQE++L+VNI H LVP+H +L+ +EKK LL RY ++ETQ+
Sbjct: 121 VTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQL 170
>gi|384497180|gb|EIE87671.1| hypothetical protein RO3G_12382 [Rhizopus delemar RA 99-880]
Length = 140
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 87/140 (62%), Gaps = 2/140 (1%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGE--NMKREDLVINKALRNDSSDQIYVFFPDEQKV 78
M+ DRGY V E++M E F F ++ R+ L ++D +DQ+ VFFP + V
Sbjct: 1 MVHDRGYLVSQSELDMDLESFKRTFAPSGDVDRDQLTFVVQKKDDPTDQLLVFFPKDPSV 60
Query: 79 GVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEH 138
GVK ++ Y RM + + + I + Q+++T A IQ++ +K LE FQE ELLVNI H
Sbjct: 61 GVKPLRVYVERMAQQQIPKGICIYQKSMTSSANKVIQQLPSKHTLESFQENELLVNITHH 120
Query: 139 VLVPEHQVLTNEEKKTLLKR 158
VLVP+H+VLT EEK TLL+R
Sbjct: 121 VLVPKHEVLTAEEKSTLLQR 140
>gi|403223518|dbj|BAM41648.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 205
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 103/165 (62%), Gaps = 2/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
D+E RLFR RRT +ML DRGYF+ E + +F A++ K R +++ + +
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPGKERLETFAEFKARYELYDKMRSKMLLVASQKTA 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S +++ V+F DE +K GVK ++ T RM+ ++ RAILV + LTPFA+ I E +
Sbjct: 62 SDNKLLVYFADETRKTGVKPIRELTERMEDHDIHRAILVTRNVLTPFAKDAIMEAYPRNI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F E ELLVNI H LVP+H LT +EK+ LL++Y VKE+Q+
Sbjct: 122 IENFMETELLVNITRHELVPKHIPLTMDEKQNLLQKYKVKESQIP 166
>gi|414586667|tpg|DAA37238.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 117
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 69/78 (88%)
Query: 90 MKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTN 149
MK+ENVF ILVVQQ L+ FAR+ +QE+S K+HLEVFQEAELLVNIK+HVLVPEH +LT
Sbjct: 1 MKNENVFAGILVVQQALSAFARSAVQEVSQKYHLEVFQEAELLVNIKDHVLVPEHVLLTP 60
Query: 150 EEKKTLLKRYTVKETQVS 167
E+KKTLL+RYTVKETQ+
Sbjct: 61 EDKKTLLERYTVKETQLP 78
>gi|392576849|gb|EIW69979.1| hypothetical protein TREMEDRAFT_29545 [Tremella mesenterica DSM
1558]
Length = 218
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 104/176 (59%), Gaps = 17/176 (9%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN----MKREDLVINKAL 60
D E+ RL+R+ RTV +M+RDRGY V ++EI S E F G + MK+E L++N
Sbjct: 6 DRELARLWRVSRTVHEMVRDRGYLVAEYEIEQSFEDFKDAHGSSGVVEMKKE-LIVNS-- 62
Query: 61 RND----------SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA 110
RN+ + D++ V+F E+ V ++K + +M+ + + IL+ + A
Sbjct: 63 RNNMHFTCDHSERTGDRLLVWFCPERNVPKSSIKIFLGQMEHRSANKGILIHPDKMGSAA 122
Query: 111 RTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+ E+ A++HLE F EA+LLVNI H LVP+H ++ EEK L+KRY +KETQ+
Sbjct: 123 NKAMMEMQAEYHLESFSEADLLVNITRHFLVPKHTIMRPEEKAALIKRYRLKETQL 178
>gi|124514006|ref|XP_001350359.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
gi|23615776|emb|CAD52768.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
Length = 205
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 104/165 (63%), Gaps = 2/165 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-MKREDLVINKALRND 63
++ + R ++ R+T +ML DRGY + E + F F +N +R + I+ +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQRSKMGISTTHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S+++I V+F DE +K GVK ++ T RM+ +++ RAILV Q LTPFAR I+E + +
Sbjct: 62 SNNRIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHI 121
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F + ELLVNI +H LVP H LT++EKK LL+RY + E ++
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLP 166
>gi|365982519|ref|XP_003668093.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
gi|343766859|emb|CCD22850.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
Length = 215
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 97/169 (57%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M+RDRGYF+ E+++S E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRTFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPTEES 68
Query: 68 IYVF---------FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I F F DE+ VGVKTMK + ++ +N I V Q N+TP A + I
Sbjct: 69 IAKFPDMGSLWAEFCDEESVGVKTMKNFVIHIQEKNFQTGIFVYQTNVTPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H L+ EEKK LLKRY +KE+Q+
Sbjct: 129 PA-TIETFHEASLVVNITHHELVPKHIKLSEEEKKELLKRYRLKESQLP 176
>gi|156848515|ref|XP_001647139.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156117823|gb|EDO19281.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 215
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 98/173 (56%), Gaps = 10/173 (5%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+ I RL+R RTV +M+RDRGYF+ EI++S E F AK+ ++M R + N
Sbjct: 5 SERSISRLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYCDSMGRPQRKMMSFQANP 64
Query: 64 SSD---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
+ + ++V F DE VGVKTMK + ++ +N I V Q N+TP A +
Sbjct: 65 TEETMEKFPTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTNVTPSAMKLV 124
Query: 115 QEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
I +E F EA L+VNI H LVP+H L+ EKK LLK+Y +KE+Q+
Sbjct: 125 PSIPPA-TIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKYRLKESQLP 176
>gi|330040362|ref|XP_003239875.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
gi|327206800|gb|AEA38977.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
Length = 216
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 107/175 (61%), Gaps = 9/175 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDF--EINMSKEQFIAKFGENMK--REDLVI 56
M + E+ LFRIRRTV+Q+L+DR Y V + ++NMS+ F K+ +N K RE + I
Sbjct: 1 MDKENNEVFNLFRIRRTVLQLLKDRNYLVFNSKDDLNMSRIDFEFKYVKNYKVVREKMEI 60
Query: 57 NKALRNDSSDQIYVFFPDEQK----VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFART 112
+ L N +I V F +++K +GVK ++ Y RMK + + ++V+ LT A+
Sbjct: 61 KRPLWNSLDKKILVVFIEKEKSGTMIGVKLIRKYCERMKQDQLSNLVIVLHAKLTSHAKQ 120
Query: 113 CIQEI-SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
I I S+ +E F E+EL++NI H LVP+H++L+ EE K L KRY +KETQ+
Sbjct: 121 AIDTINSSGDKIEYFNESELIINITHHTLVPKHEILSLEESKCLFKRYYIKETQL 175
>gi|367013608|ref|XP_003681304.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
gi|359748964|emb|CCE92093.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
Length = 215
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 96/169 (56%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RT+ +M++DRGYF+ EI +S E F K+ ++M R + N + +
Sbjct: 9 ISRLWRTFRTMKEMVKDRGYFIAQEEIELSLEDFKVKYCDSMGRPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ITKFPNLGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H L+ EEKK LLKRY +KE+Q+
Sbjct: 129 PA-TIETFHEASLVVNITHHELVPKHIKLSEEEKKELLKRYRLKESQLP 176
>gi|290878169|emb|CBK39228.1| Rpb5p [Saccharomyces cerevisiae EC1118]
Length = 215
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H L+N+EK+ LLKRY +KE+Q+
Sbjct: 129 PA-TIETFNEAALVVNITHHELVPKHIRLSNDEKRELLKRYRLKESQLP 176
>gi|399949804|gb|AFP65461.1| RNA polymerase I, II and III 24.3 kDa subunit [Chroomonas
mesostigmatica CCMP1168]
Length = 216
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 110/175 (62%), Gaps = 9/175 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFE--INMSKEQFIAKFGENMK--REDLVI 56
M D+EI +FR+R+TV Q+LRDRG+ V D + ++M + F KF +N + RE+L I
Sbjct: 1 MESRDKEIFNVFRVRKTVFQILRDRGFIVLDNQEDLDMPRTVFERKFVKNYQIVREELEI 60
Query: 57 NKALRNDSSDQIYVFFPDEQK----VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFART 112
+ + +I V F +K +GVK+++ Y R+K +N +ILV+ LT A+
Sbjct: 61 IRPKWQMENHKILVAFVQGEKGKLTIGVKSIREYCERIKQDNYESSILVLHGRLTSHAKQ 120
Query: 113 CIQEI-SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
I I S +E F E+EL++NI EH LVP+H++++ EEKK+LLKRY++KE Q+
Sbjct: 121 AISSINSVSDRIEYFSESELIINITEHCLVPKHEIISLEEKKSLLKRYSIKENQL 175
>gi|326520990|dbj|BAJ92858.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531658|dbj|BAJ97833.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 251
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E +RLF RRT ++MLRDRGY V + E+ + +F A + E + E L + L +D S
Sbjct: 53 ESQRLFLARRTALEMLRDRGYSVPEDELARTLPEFRAWWSETPEIERLSFSTTLASDPSS 112
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + ++ R+K EN+ IL++Q +T AR I+EI KF ++VF
Sbjct: 113 KVRIVFCPPEPVKIAAIREVHLRIKEENLSCLILILQSKITARARESIKEI-FKFKVDVF 171
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
Q ELLVNI +HVL P H+VLT EEK LLK Y V ++Q+
Sbjct: 172 QITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQL 211
>gi|366996969|ref|XP_003678247.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
gi|342304118|emb|CCC71905.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
Length = 215
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 96/169 (56%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M+RDRGYF+ E+++S E F K+ ++M R + N + +
Sbjct: 9 ISRLWRTFRTVKEMVRDRGYFITQEEVDLSLEDFKTKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 IYVF---------FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I F F DE VGVKTMK++ ++ +N I V Q N+TP A + I
Sbjct: 69 IAKFPSMGSLWAEFCDEPSVGVKTMKSFVIHIQEKNFQTGIFVFQTNVTPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H L+ EEK+ LLKRY +KE+Q+
Sbjct: 129 PA-TIETFHEASLVVNITHHELVPKHIRLSEEEKRELLKRYRLKESQLP 176
>gi|346703190|emb|CBX25289.1| hypothetical_protein [Oryza brachyantha]
Length = 288
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 1/160 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E KRLF RRT ++MLRDRGY V + EI + +F A +GE + E L L +D S
Sbjct: 90 ESKRLFLARRTALEMLRDRGYSVPEEEIARTLPEFRAWWGEKSEIERLAFTTTLVSDPSK 149
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + + EN+ R IL++Q + AR I+EI K +++F
Sbjct: 150 KVQIVFCPPEPVKIATIREIYRQTEGENLSRLILILQSRILSRARESIKEI-FKLKVDIF 208
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
Q ELLVNI +HVL P+H+VL+ +K LLK+Y V+++Q+
Sbjct: 209 QVTELLVNITKHVLKPKHEVLSAAQKAKLLKQYNVEDSQL 248
>gi|71019505|ref|XP_759983.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
gi|46099489|gb|EAK84722.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
Length = 554
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALR 61
D E RL+R+ RT+ +++RDRGY V D EI++ E F A++ G ++ R L
Sbjct: 4 DRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFTEHG 63
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+ +++VF+ ++ VGVKTM+ + + M+ ++ R I++ + +T AR I + F
Sbjct: 64 EHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTF 123
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
HLE F+EA LLVNI H LVP+H+ L EEKK LL+R
Sbjct: 124 HLEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELLQR 160
>gi|6319630|ref|NP_009712.1| Rpb5p [Saccharomyces cerevisiae S288c]
gi|133338|sp|P20434.1|RPAB1_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=ABC27; AltName: Full=DNA-directed
RNA polymerases I, II, and III 27 kDa polypeptide
gi|9257127|pdb|1DZF|A Chain A, Rpb5 From S.Cerevisiae
gi|14278327|pdb|1I3Q|E Chain E, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278338|pdb|1I50|E Chain E, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278368|pdb|1I6H|E Chain E, Rna Polymerase Ii Elongation Complex
gi|20150716|pdb|1K83|E Chain E, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749620|pdb|1NIK|E Chain E, Wild Type Rna Polymerase Ii
gi|30749741|pdb|1NT9|E Chain E, Complete 12-Subunit Rna Polymerase Ii
gi|34810557|pdb|1PQV|E Chain E, Rna Polymerase Ii-Tfiis Complex
gi|46015418|pdb|1R5U|E Chain E, Rna Polymerase Ii Tfiib Complex
gi|46015783|pdb|1SFO|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965914|pdb|1R9S|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965926|pdb|1R9T|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966110|pdb|1TWA|E Chain E, Rna Polymerase Ii Complexed With Atp
gi|56966124|pdb|1TWC|E Chain E, Rna Polymerase Ii Complexed With Gtp
gi|56966134|pdb|1TWF|E Chain E, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966144|pdb|1TWG|E Chain E, Rna Polymerase Ii Complexed With Ctp
gi|56966154|pdb|1TWH|E Chain E, Rna Polymerase Ii Complexed With 2'datp
gi|58177168|pdb|1WCM|E Chain E, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679448|pdb|1Y1W|E Chain E, Complete Rna Polymerase Ii Elongation Complex
gi|61679465|pdb|1Y77|E Chain E, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679506|pdb|1Y1V|E Chain E, Refined Rna Polymerase Ii-tfiis Complex
gi|61679519|pdb|1Y1Y|E Chain E, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754247|pdb|2B63|E Chain E, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590858|pdb|2B8K|E Chain E, 12-Subunit Rna Polymerase Ii
gi|122920064|pdb|2E2H|E Chain E, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920079|pdb|2E2I|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920094|pdb|2E2J|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921033|pdb|2NVQ|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921069|pdb|2NVT|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921085|pdb|2NVX|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921100|pdb|2NVY|E Chain E, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921112|pdb|2NVZ|E Chain E, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104678|pdb|2JA5|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104693|pdb|2JA6|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104714|pdb|2JA7|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104726|pdb|2JA7|Q Chain Q, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104738|pdb|2JA8|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387187|pdb|2YU9|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877777|pdb|2R7Z|E Chain E, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172231|pdb|2R92|E Chain E, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172244|pdb|2R93|E Chain E, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613466|pdb|2VUM|E Chain E, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368737|pdb|3CQZ|E Chain E, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983594|pdb|3FKI|E Chain E, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781919|pdb|3GTG|E Chain E, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781932|pdb|3GTJ|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781945|pdb|3GTK|E Chain E, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781958|pdb|3GTL|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781971|pdb|3GTM|E Chain E, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781985|pdb|3GTO|E Chain E, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781998|pdb|3GTP|E Chain E, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782011|pdb|3GTQ|E Chain E, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104515|pdb|3H3V|F Chain F, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839445|pdb|3HOU|E Chain E, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839460|pdb|3HOU|Q Chain Q, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839475|pdb|3HOV|E Chain E, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839490|pdb|3HOW|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839505|pdb|3HOX|E Chain E, Complete Rna Polymerase Ii Elongation Complex V
gi|254839520|pdb|3HOY|E Chain E, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839535|pdb|3HOZ|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471950|pdb|3I4M|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471965|pdb|3I4N|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618769|pdb|3K1F|E Chain E, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914555|pdb|3K7A|E Chain E, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982478|pdb|3M3Y|E Chain E, Rna Polymerase Ii Elongation Complex C
gi|295982491|pdb|3M4O|E Chain E, Rna Polymerase Ii Elongation Complex B
gi|325053967|pdb|3PO2|E Chain E, Arrested Rna Polymerase Ii Elongation Complex
gi|325053982|pdb|3PO3|E Chain E, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634542|pdb|3QT1|E Chain E, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197459|pdb|3RZD|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197471|pdb|3RZO|E Chain E, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197483|pdb|3S14|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197495|pdb|3S15|E Chain E, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197507|pdb|3S16|E Chain E, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197519|pdb|3S17|E Chain E, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197531|pdb|3S1M|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197543|pdb|3S1N|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197555|pdb|3S1Q|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197567|pdb|3S1R|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197579|pdb|3S2D|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781200|pdb|3S2H|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251637|pdb|3J0K|E Chain E, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380840|pdb|4A3C|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546294|pdb|4A3B|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546312|pdb|4A3D|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546329|pdb|4A3E|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546346|pdb|4A3F|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546363|pdb|4A3J|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546380|pdb|4A3K|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546396|pdb|4A3L|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546413|pdb|4A3M|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977883|pdb|4A3G|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977898|pdb|4A3I|E Chain E, Rna Polymerase Ii Binary Complex With Dna
gi|380764983|pdb|4A93|E Chain E, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145450|pdb|4BBR|E Chain E, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145463|pdb|4BBS|E Chain E, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|287822|emb|CAA37381.1| RNA polymerase RPB5 subunit [Saccharomyces cerevisiae]
gi|396754|emb|CAA50472.1| DNA-directed RNA polymerase [Saccharomyces cerevisiae]
gi|536484|emb|CAA85113.1| RPB5 [Saccharomyces cerevisiae]
gi|151946543|gb|EDN64765.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae YJM789]
gi|190408693|gb|EDV11958.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae RM11-1a]
gi|207347621|gb|EDZ73732.1| YBR154Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270199|gb|EEU05422.1| Rpb5p [Saccharomyces cerevisiae JAY291]
gi|285810484|tpg|DAA07269.1| TPA: Rpb5p [Saccharomyces cerevisiae S288c]
gi|323334603|gb|EGA75977.1| Rpb5p [Saccharomyces cerevisiae AWRI796]
gi|323338690|gb|EGA79906.1| Rpb5p [Saccharomyces cerevisiae Vin13]
gi|323356099|gb|EGA87904.1| Rpb5p [Saccharomyces cerevisiae VL3]
gi|349576528|dbj|GAA21699.1| K7_Rpb5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300997|gb|EIW12086.1| Rpb5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 215
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H L+++EK+ LLKRY +KE+Q+
Sbjct: 129 PA-TIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLP 176
>gi|401626842|gb|EJS44762.1| rpb5p [Saccharomyces arboricola H-6]
Length = 215
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 96/169 (56%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R +TV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFKTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ITKFPEMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H L+ +EKK LLKRY +KE+Q+
Sbjct: 129 PA-SIETFNEAALVVNITHHELVPKHIRLSTDEKKELLKRYRLKESQLP 176
>gi|444321044|ref|XP_004181178.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
gi|387514222|emb|CCH61659.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
Length = 215
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 12/170 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
+ RL+R RTV +M+RDRGYF+ EI++S E F +K+ +M + N + + + +++
Sbjct: 9 VSRLWRTFRTVKEMVRDRGYFITQEEIDLSLEDFKSKYTNSMGTPERK-NISFQANPTEE 67
Query: 68 ----------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
++V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 68 TLAKFPELGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSI 127
Query: 118 SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H L++EEKK LLK+Y +KE+Q+
Sbjct: 128 PPA-TIETFHEASLIVNITHHELVPKHIRLSDEEKKELLKKYRLKESQLP 176
>gi|162606200|ref|XP_001713615.1| RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
gi|13794535|gb|AAK39910.1|AF165818_118 RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
Length = 214
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 107/167 (64%), Gaps = 9/167 (5%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDF--EINMSKEQFIAKFGEN--MKREDLVINKAL 60
D+ I+ LF++RRTV+QM+RDRGY V D ++N+S+ F + +N + R+ L I +
Sbjct: 4 DKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIKRPR 63
Query: 61 RNDSSDQIYVFF----PDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
++ ++I + F D+ +GVK+++ + R+K+E R ++++ LTP A+ +
Sbjct: 64 WDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHAKQAVSS 123
Query: 117 ISAKFHL-EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
I++ L E F E EL+VNI H+LVP+H++L+ E K+LL+RY++K
Sbjct: 124 INSNNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSIK 170
>gi|125533361|gb|EAY79909.1| hypothetical protein OsI_35073 [Oryza sativa Indica Group]
Length = 227
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT M+MLRDRGY V + EI + +F A + E E L L +D S
Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTPPEFRAWWAEKPGIERLAFTTTLVSDPSK 88
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + K EN+ R +L++Q + AR I+EI KF +++F
Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
Q +LLVNI +HVL P+H+VL+ ++K LLK Y V+++Q+
Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLP 188
>gi|357153158|ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836489 [Brachypodium
distachyon]
Length = 468
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 100/163 (61%), Gaps = 1/163 (0%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
D E RLF RRT ++MLRDR Y V + ++ + +F A + E + + L + L +D
Sbjct: 267 GDPESHRLFLARRTALEMLRDRRYAVPEADLARTLPEFRAWWAERPEIDRLSFSTTLASD 326
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
S+++ + F + + ++ R+K EN+ ILV+Q +T A+ I+EI K+ +
Sbjct: 327 PSNKVQLVFCPPEPFKIAAIREVYGRVKDENLSCLILVLQSKITSRAKDAIKEI-FKYKV 385
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+VFQ AELLVN+ +HVL PEH+VLT EEK LLK+Y V ++Q+
Sbjct: 386 DVFQIAELLVNVTKHVLKPEHEVLTPEEKAHLLKKYNVVDSQL 428
>gi|1680605|gb|AAC60556.1|S59774_1 RNA polymerase subunit [Saccharomyces cerevisiae]
Length = 215
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 96/169 (56%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVEWPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H L+++EK+ LLKRY +KE+Q+
Sbjct: 129 PA-TIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLP 176
>gi|108862173|gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 335
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT M+MLRDRGY V + EI + +F A + E E L L +D S
Sbjct: 137 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 196
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + K EN+ R +L++Q + AR I+EI KF +++F
Sbjct: 197 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 255
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
Q +LLVNI +HVL P+H+VL+ ++K LLK Y V+++Q+
Sbjct: 256 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQL 295
>gi|365766868|gb|EHN08357.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 215
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 96/169 (56%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H L+ +EK+ LLKRY +KE+Q+
Sbjct: 129 PA-TIETFNEAALVVNITHHELVPKHIRLSXDEKRELLKRYRLKESQLP 176
>gi|406699193|gb|EKD02404.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 211
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--MKREDLVINKALR 61
SD E+ RL+R+ +TV +M+RDRGY V D+EINMS + F +G + R + +
Sbjct: 5 SDRELARLWRVSKTVHEMIRDRGYEVADYEINMSFDDFKETYGGGGSVDRGRMAFHANHS 64
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
DS D+IYVFF E+ V T K++ + + R ++V LT A E+ +++
Sbjct: 65 RDSRDRIYVFFCAEEAVSKATYKSFVTSLDAVGAKRGLIVHGGKLTSGAAKTQNEMQSEY 124
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVL 147
HLE F+EA+LLVNI H LVP+H ++
Sbjct: 125 HLEDFKEADLLVNITRHFLVPKHTIM 150
>gi|357155279|ref|XP_003577067.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 270
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
+ E+ LF RRT ++MLRDRGY V + E+ + +F A + E + L + +D
Sbjct: 69 ASHEVHSLFLARRTALEMLRDRGYSVPEPELARTLTEFRAWWAEKPEMRRLSFSATFASD 128
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
S+++ F + V + T++ ++++ EN+ R IL++Q ++T AR CI+EI F +
Sbjct: 129 HSNKVQFVFCPPKPVNITTIREVYSQIEEENLSRLILILQGDITSKARDCIKEI-FPFKV 187
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
++FQ ELLVNI +H L P+H+VLT EEK LLK+Y ++++++
Sbjct: 188 DIFQVTELLVNISKHELKPKHEVLTAEEKAELLKKYNLEDSRLP 231
>gi|241950235|ref|XP_002417840.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
gi|223641178|emb|CAX45555.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
Length = 214
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 103/175 (58%), Gaps = 10/175 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D + RLFR +TV +M+RDRGY++ E++M+ E+F +K ++M +R+ +
Sbjct: 1 MDDTDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQ 60
Query: 58 KALRNDS------SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
++ + ++V F DE VG+KTM+ + + +N I + Q ++TP A
Sbjct: 61 ATPTGETLEKFPETGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSAN 120
Query: 112 TCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
I +S +E+FQE +L+VNI H LVP+H L +EEKK LL RY +KE+Q+
Sbjct: 121 KLIPTVSPA-TIEIFQENDLIVNITHHELVPKHLKLNHEEKKELLTRYRLKESQL 174
>gi|346703279|emb|CBX25377.1| hypothetical_protein [Oryza brachyantha]
Length = 226
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 99/161 (61%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E KRLF RRT ++MLRDRGY V D EI + +F A +GE + E L L +D S
Sbjct: 30 ESKRLFLARRTALEMLRDRGYSVPDEEIARTLPEFRAWWGEKSEIERLAFTTTLVSDPSK 89
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + + EN+ R IL++Q + AR I+EI K +++F
Sbjct: 90 KVQIVFCPPEPVKIATIREIYRQTEGENLSRLILILQSRILSRARESIKEI-FKLKVDIF 148
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
Q ELLVNI +HVL P+H+VL+ +K LLK+Y V+++Q+
Sbjct: 149 Q--ELLVNITKHVLKPKHEVLSAAQKAKLLKQYNVEDSQLP 187
>gi|406605852|emb|CCH42738.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 215
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 10/172 (5%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---LVINKAL 60
+D + RL+R RTV +M DRGYF+ EI M+ E+F +K+ + M R + +
Sbjct: 5 NDRIVSRLWRAFRTVKEMALDRGYFIATEEITMNLEEFRSKYCDAMGRPQRKLMSFQASP 64
Query: 61 RNDSSDQ------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
++S Q ++V F DE VG+KTMK + + +N I + Q +TP A I
Sbjct: 65 TSESLGQFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFSVGIFIYQNGITPSANKLI 124
Query: 115 QEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ +E FQE++L+VNI H LVP+H VL+++EKK LL+RY +KE+Q+
Sbjct: 125 PTVAPAV-IETFQESDLIVNITHHELVPKHIVLSDDEKKELLERYRLKESQL 175
>gi|358054002|dbj|GAA99801.1| hypothetical protein E5Q_06504 [Mixia osmundae IAM 14324]
Length = 298
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVIN------ 57
++ +I R++R+ RTV ++ RDRGY + + EINMS ++F + N + +N
Sbjct: 5 TERDIARVWRVNRTVRELCRDRGYTMSEQEINMSLQKFTESYTMNGHLDRTALNFHASRH 64
Query: 58 --KALRNDSS-DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
A R ++ QIYVFF +E+ +G+K ++ + + N+ IL+ +Q++TP A +
Sbjct: 65 VPVAGREETEVQQIYVFFAEERSLGIKPVREFLTVLLDRNLHSGILIYKQSITPPALRAL 124
Query: 115 QEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+ E E+ELLVNI +H LVP+H+VL+ +K LLK+Y +K+TQ+
Sbjct: 125 AQAGQHTTAEALSESELLVNITQHTLVPKHEVLSPMDKAELLKKYRLKDTQL 176
>gi|313765818|gb|ADR80315.1| RNA polymerase B5-subunit [Rutilus rutilus]
Length = 129
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLE 124
K+ LE
Sbjct: 123 PKYILE 128
>gi|209878710|ref|XP_002140796.1| DNA-directed RNA polymerase 2 [Cryptosporidium muris RN66]
gi|209556402|gb|EEA06447.1| DNA-directed RNA polymerase 2, putative [Cryptosporidium muris
RN66]
Length = 205
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 98/168 (58%), Gaps = 10/168 (5%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
D R FR RRT+ +ML DRGY V + K++ A F E + R +++ +
Sbjct: 2 DNSDTRFFRARRTLCEMLEDRGYIVS----SQDKDEQFATFKERFESHQRLRSRMLMVAS 57
Query: 60 LRNDSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
+ D + +I +F DE +K GVK ++ +M N+ RAIL+ Q LT A+ I + +
Sbjct: 58 HKQDQTKRIICYFADESKKTGVKPIRDIVEKMDEHNIQRAILISQNVLTAHAKVAILDAA 117
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K ++E F E ELLVNI H LVP+H +L++EEK LL+RY VKETQ+
Sbjct: 118 PKHYIESFLENELLVNITRHELVPKHVLLSDEEKSQLLERYKVKETQL 165
>gi|115487264|ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|113648626|dbj|BAF29138.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|125535725|gb|EAY82213.1| hypothetical protein OsI_37416 [Oryza sativa Indica Group]
gi|125578454|gb|EAZ19600.1| hypothetical protein OsJ_35178 [Oryza sativa Japonica Group]
gi|346703760|emb|CBX24428.1| hypothetical_protein [Oryza glaberrima]
Length = 227
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT M+MLRDRGY V + EI + +F A + E E L L +D S
Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 88
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + K EN+ R +L++Q + AR I+EI KF +++F
Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
Q +LLVNI +HVL P+H+VL+ ++K LLK Y V+++Q+
Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLP 188
>gi|241696177|ref|XP_002411834.1| RNA polymerase, 25-kDa subunit, putative [Ixodes scapularis]
gi|215504757|gb|EEC14251.1| RNA polymerase, 25-kDa subunit, putative [Ixodes scapularis]
Length = 91
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 70/91 (76%)
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQQ +TP A+ + +++ K+ LE F
Sbjct: 1 MFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALGDMAPKYILEHFL 60
Query: 128 EAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
E+ELL+NI EH LVPEH VLT EEK LL R
Sbjct: 61 ESELLINITEHELVPEHVVLTPEEKAELLAR 91
>gi|115484123|ref|NP_001065723.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|77548620|gb|ABA91417.1| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113644427|dbj|BAF27568.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|125576186|gb|EAZ17408.1| hypothetical protein OsJ_32930 [Oryza sativa Japonica Group]
Length = 227
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT M+MLRDRGY V + EI + +F A + E E L L +D S
Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 88
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + K EN+ R +L++Q + AR I+EI KF +++F
Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
Q +LLVNI +HVL P+H+VL+ ++K LLK Y V+++Q+
Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLP 188
>gi|126275976|ref|XP_001386931.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
gi|126212800|gb|EAZ62908.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
Length = 213
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 99/171 (57%), Gaps = 10/171 (5%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
D + RLFR +TV +M+RDRGY++ E++MS ++F AK ++M R + N +
Sbjct: 4 DRTVSRLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRAKICDSMGRPQRKLMCFQANPT 63
Query: 65 SDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
++ + +V F DE VG+KTM+ + + +N I + Q ++TP A I
Sbjct: 64 AESLDKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITPSANKLIP 123
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+S +E FQE +L+VNI H LVP+H L+ +EKK LL RY +KE+Q+
Sbjct: 124 TVSPA-SIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRYRLKESQL 173
>gi|50290313|ref|XP_447588.1| hypothetical protein [Candida glabrata CBS 138]
gi|54036350|sp|Q6FQA6.1|RPAB1_CANGA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49526898|emb|CAG60525.1| unnamed protein product [Candida glabrata]
Length = 215
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 10/173 (5%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
+D I RL+R RTV +M+RDRGYF+ E++++ E F K+ ++M R + N
Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64
Query: 64 SSDQ---------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
+ + ++V F DE VGVKTMKT+ ++ + I + Q N+TP A +
Sbjct: 65 TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124
Query: 115 QEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
I +E F EA L+VNI H LVP+H L EEK LLKRY +KE+Q+
Sbjct: 125 PSIPPA-TIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLP 176
>gi|346703375|emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]
Length = 206
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT M+MLRDRGY V + EI + +F A + E E L L +D S
Sbjct: 8 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 67
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + K EN+ R +L++Q + AR I+EI KF +++F
Sbjct: 68 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 126
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
Q +LLVNI +HVL P+H+VL+ ++K LLK Y V+++Q+
Sbjct: 127 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLP 167
>gi|254578454|ref|XP_002495213.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
gi|238938103|emb|CAR26280.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
Length = 215
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R +TV +M++DRGYF+ EI + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYCDSMGRPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 IAKFPSMGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNNVTPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H + +EK+ LLKRY +KE+Q+
Sbjct: 129 PA-TIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRYRLKESQLP 176
>gi|320582063|gb|EFW96281.1| RNA polymerase subunit ABC27 [Ogataea parapolymorpha DL-1]
Length = 214
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 10/166 (6%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVINKALRNDSSD 66
RL+R RTV +M+RDRGY++ EI++S +QF K ++M +R+ + ++++
Sbjct: 10 RLWRAYRTVKEMVRDRGYYITQEEIDISLDQFREKICDSMGMPQRKLMSFQANASQEAAE 69
Query: 67 Q------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+ ++V F DE VG+ TMK + + +N I + QQN+TP A I ++
Sbjct: 70 KYGDLGPLWVEFCDEPSVGITTMKNFCQHIADKNFATGIFIYQQNMTPSATKAIA-VAEP 128
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E FQEA+++VNI H LVP+H L+ EEKK LL RY +KE+Q+
Sbjct: 129 AIIETFQEADIIVNITHHELVPKHIRLSTEEKKELLARYRLKESQL 174
>gi|367006695|ref|XP_003688078.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
gi|357526385|emb|CCE65644.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
Length = 215
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 10/173 (5%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+ + L+R RTV +M+RDRGYF+ EI + E F AK+ + M + + N
Sbjct: 5 SERSVSSLWRTFRTVKEMVRDRGYFISQDEIELPLEDFRAKYCDYMGKPQRKMMSFQANP 64
Query: 64 S---------SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
+ + ++V F DE VGVKTMK + ++ +N I V Q N+TP A +
Sbjct: 65 TEESLEKFPETGSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTNVTPSAMKLV 124
Query: 115 QEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
I +E F EA L+VNI H LVP+H L+ EEKK LLKRY +KE+Q+
Sbjct: 125 PSIPPA-TIETFHEASLVVNITHHELVPKHIRLSEEEKKDLLKRYRLKESQLP 176
>gi|255718861|ref|XP_002555711.1| KLTH0G15598p [Lachancea thermotolerans]
gi|238937095|emb|CAR25274.1| KLTH0G15598p [Lachancea thermotolerans CBS 6340]
Length = 215
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 10/168 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKR--------EDLVINKA 59
+ RL+R +TV +M+RDRGYF+ E+++S E F AK+ ++M R + + +A
Sbjct: 9 VSRLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPVEEA 68
Query: 60 LRN-DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
L + ++V F DE VG+KTMK + + +N I V Q +TP A + +
Sbjct: 69 LEKFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTGIFVYQNGVTPSAMKLLPSV- 127
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
A +E F EA L+VNI H LVP+H L++EEKK LL+RY +KE+Q+
Sbjct: 128 APATIETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRYRLKESQL 175
>gi|365761982|gb|EHN03600.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841351|gb|EJT43753.1| RPB5-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 215
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R +TV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFKTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
+ +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 VSKFPEMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H L+ +EK+ LLKRY +KE+Q+
Sbjct: 129 PA-TIETFNEAALVVNITHHELVPKHIRLSTDEKRELLKRYRLKESQLP 176
>gi|45190642|ref|NP_984896.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|54036391|sp|Q757H7.1|RPAB1_ASHGO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|44983621|gb|AAS52720.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|374108119|gb|AEY97026.1| FAER036Wp [Ashbya gossypii FDAG1]
Length = 215
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD- 66
+ RL+R RTV +M+RDRGYF+ E+++S E F AK+ ++M R + N + +
Sbjct: 9 VSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPTEET 68
Query: 67 --------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
++V F DE VG+KTMK + + +N I + Q +TP A + +
Sbjct: 69 LKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSV- 127
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
A +E F E L+VNI H LVP+H L++EEKK LLKRY +KE+Q+
Sbjct: 128 APATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLP 176
>gi|242069947|ref|XP_002450250.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
gi|241936093|gb|EES09238.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
Length = 263
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 95/161 (59%), Gaps = 1/161 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E KRLF RRT ++MLRDRGY V + E+ + +F A + + + E L + L +D S
Sbjct: 65 ESKRLFLARRTALEMLRDRGYAVPEDELARTLPEFRAWWEDKPELERLAFSTTLASDPSS 124
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ V F + V + ++ +K EN+ R IL++Q + AR I+EI + ++ F
Sbjct: 125 KVKVVFCPPEPVKIAAIRVVYTGVKDENLSRLILILQGRIMSKAREAIKEIF-PYKVDTF 183
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
Q ELLVNI +H L P+HQVLT EEK LLK Y V ++Q+
Sbjct: 184 QITELLVNITKHALKPKHQVLTAEEKAKLLKEYNVVDSQLP 224
>gi|255728687|ref|XP_002549269.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240133585|gb|EER33141.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 214
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D I RLFR +TV +M+RDRGY++ EI+M+ E+F +K ++M +R+ +
Sbjct: 1 MDETDRSISRLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRSKICDSMGNPQRKQMCFQ 60
Query: 58 KALRNDSSDQ------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
++ ++ ++V F DE VG+KTM+ + + +N + + Q ++TP A
Sbjct: 61 AQPTGETLEKFPELGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGLFIYQNSITPSAN 120
Query: 112 TCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
I +S +E+FQE++L+VNI H LVP+H L+ +EK LL+RY +KE+Q+
Sbjct: 121 KLIPTVSPSV-IEIFQESDLIVNITHHELVPKHLKLSKDEKVELLERYRLKESQL 174
>gi|238878328|gb|EEQ41966.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
albicans WO-1]
Length = 214
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 102/175 (58%), Gaps = 10/175 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D + RLFR +TV +M+RDRGY++ E++M+ E+F +K ++M +R+ +
Sbjct: 1 MDDTDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQ 60
Query: 58 KALRNDS------SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
++ + ++V F DE VG+KTM+ + + +N I + Q ++TP A
Sbjct: 61 ATPTAETLEKFPETGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSAN 120
Query: 112 TCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
I +S +E+FQE +L+VNI H LVP+H L EEKK LL RY +KE+Q+
Sbjct: 121 KLIPTVSPA-TIEIFQENDLIVNITHHELVPKHLKLNREEKKELLTRYRLKESQL 174
>gi|224087898|ref|XP_002198655.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Taeniopygia guttata]
Length = 119
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 79/113 (69%), Gaps = 5/113 (4%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAK 115
>gi|363753390|ref|XP_003646911.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890547|gb|AET40094.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
Length = 215
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
+ RL+R RTV +M+RDRGYF+ EI+++ + F AK+ ++M R + N + +
Sbjct: 9 VSRLWRAFRTVKEMVRDRGYFITQEEIDLALDDFKAKYCDSMGRPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I ++ F DE VG+KTMK + + +N I + Q +TP A + +
Sbjct: 69 IVKSPQMGSVWIEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSV- 127
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
A +E F EA L+VNI H LVP+H L++EEK+ LLKRY +KE+Q+
Sbjct: 128 APATIETFNEASLVVNITHHELVPKHIKLSDEEKRELLKRYRLKESQLP 176
>gi|297824079|ref|XP_002879922.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297325761|gb|EFH56181.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 218
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 101/161 (62%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E + + RRT M+MLRDRGY V D ++N S EQF A +GE + + L I+ R DSS
Sbjct: 20 ECHKYYLARRTTMEMLRDRGYDVSDEDVNFSLEQFRALYGERLDVDRLRISAKHRFDSSK 79
Query: 67 QIYVFFPDEQKVGVKTMKTY-TNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V M+ + + E++ ILV+Q ++T A ++ S F +E+
Sbjct: 80 KIMVVFCGTGMVKVNAMRAIAADVLNRESITGLILVLQSHITNQALKAVELFS--FKVEL 137
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
F+ +LLVN+ +HVL P+HQVL ++EK++LLK+Y+++E Q+
Sbjct: 138 FEITDLLVNVTKHVLRPKHQVLNDKEKESLLKKYSIEEKQL 178
>gi|11994623|dbj|BAB02760.1| RNA polymerase-like protein [Arabidopsis thaliana]
Length = 178
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 93/161 (57%), Gaps = 34/161 (21%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M L DEEIKRLF ++RT+MQML+DRGY + EI M+ E+FI K+G+NMK
Sbjct: 1 MALMDEEIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGDNMK---------- 50
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+++ + K + RAILVV Q++ F+R + + A
Sbjct: 51 --------------------RSLLLLSKLRKMMTMIRAILVV-QDIKAFSRQALVFLGAV 89
Query: 121 ---FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
FH+EVFQE EL+VN+KEHV VPEHQ LT EEK+ L+R
Sbjct: 90 YPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQKFLER 130
>gi|12229927|sp|Q9P4B9.1|RPAB1_KLUMA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|9651716|gb|AAF91238.1|AF225206_4 RNA polymerase subunit [Kluyveromyces marxianus]
Length = 215
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M+RDRGYF+ EI++S E F K+ ++M + + N + +
Sbjct: 9 ISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMK + + +N I + Q +TP A I +
Sbjct: 69 IEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANK-ILPTA 127
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
A +E F EA L+VNI H LVP+H L++ EKK LLKRY +KE+Q+
Sbjct: 128 APAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLP 176
>gi|254570507|ref|XP_002492363.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|238032161|emb|CAY70112.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|328353624|emb|CCA40022.1| DNA-directed RNA polymerase II subunit E [Komagataella pastoris CBS
7435]
Length = 214
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 10/168 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M DRGYF+ E++ S E+F +K ++M + L N + +
Sbjct: 8 ISRLWRSFRTVKEMAADRGYFISQEEMDQSLEEFRSKICDSMGNPQRKLMSFLANPTPEA 67
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
+ +V F DE VG+KTM+ + R++ +N I + Q N+TP A I +S
Sbjct: 68 LEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTGIFIYQNNITPSANKMIPTVS 127
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E FQE++L+VNI H LVP+H L++ EK LL+RY +KE+Q+
Sbjct: 128 PAI-IETFQESDLVVNITHHELVPKHIRLSDGEKSQLLQRYKLKESQL 174
>gi|50311991|ref|XP_456027.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|54036341|sp|Q6CJ62.1|RPAB1_KLULA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49645163|emb|CAG98735.1| KLLA0F21098p [Kluyveromyces lactis]
Length = 215
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 10/168 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R +TV +M+RDRGYF+ EI++S E F AK+ ++M + + N + +
Sbjct: 9 ISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMK + + +N I + Q +TP A I +
Sbjct: 69 IEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANK-ILPTA 127
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
A +E F EA L+VNI H LVP+H L+ EKK LLKRY +KE+Q+
Sbjct: 128 APAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQL 175
>gi|323349753|gb|EGA83968.1| Rpb5p [Saccharomyces cerevisiae Lalvin QA23]
Length = 215
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ + I V Q N+TP A + I
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKXFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F EA L+VNI H LVP+H L+ +EK+ LLKRY +KE+Q+
Sbjct: 129 PA-TIETFNEAALVVNITHHELVPKHIRLSXDEKRELLKRYRLKESQLP 176
>gi|15227327|ref|NP_181665.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
gi|3894190|gb|AAC78539.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
gi|19310385|gb|AAL84932.1| At2g41340/F13H10.11 [Arabidopsis thaliana]
gi|330254867|gb|AEC09961.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
Length = 218
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 103/164 (62%), Gaps = 3/164 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S E + + RRT M+MLRDRGY V D +IN+S +QF A +GE+ + L I+ R D
Sbjct: 17 SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKS-ENVFRAILVVQQNLTPFARTCIQEISAKFH 122
SS +I V F V V M+ + S EN+ ILV+Q ++T A ++ S F
Sbjct: 77 SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFS--FK 134
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E+F+ +LLVN+ +HVL P+HQVL ++EK++LLK+++++E Q+
Sbjct: 135 VELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQL 178
>gi|344307865|ref|XP_003422599.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Loxodonta africana]
Length = 224
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 98/186 (52%), Gaps = 27/186 (14%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFV---GDFEINMSKEQFIAKFGENMKREDLVINKALR 61
+EE RL++IR+T+MQ+ R R V G E +S + R +AL
Sbjct: 4 EEETYRLWKIRKTIMQVSRARNGLVVPGGGKERGVSPSLSPCGWIGGSPRPP----QALV 59
Query: 62 NDSSDQIYVFFP--------------------DEQKVGVKTMKTYTNRMKSENVFRAILV 101
S+ + P +E KVG+KT+K Y RM+ EN+ RA++V
Sbjct: 60 AGSAPGALPYVPRAQRRDTCFGAGRARVTVRREEPKVGIKTIKVYCQRMQEENITRALIV 119
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
VQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPEH V+T EE LL RY +
Sbjct: 120 VQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 179
Query: 162 KETQVS 167
+E Q+
Sbjct: 180 RENQLP 185
>gi|66358302|ref|XP_626329.1| DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa II]
gi|46228002|gb|EAK88922.1| putative DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa
II]
Length = 214
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 99/172 (57%), Gaps = 10/172 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
+ + D R FR RRT+ +ML DRGY V + KE+ + F E + R ++
Sbjct: 7 LIIMDSSDNRFFRARRTLCEMLEDRGYIVS----SQDKEEDFSTFKERFESHQRLRSRML 62
Query: 56 INKALRNDSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
+ + R D + +I +F DE +K GVK ++ +M + RAIL+ Q LT A+ I
Sbjct: 63 MVASHRQDQTKRIICYFADESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAI 122
Query: 115 QEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+ + K ++E F E ELLVNI +H LVP+H +L+++EK LL RY +KETQ+
Sbjct: 123 LDAAPKHYIESFLENELLVNITKHELVPKHILLSDDEKLQLLDRYKIKETQL 174
>gi|160331077|ref|XP_001712246.1| rpabc5 [Hemiselmis andersenii]
gi|159765693|gb|ABW97921.1| rpabc5 [Hemiselmis andersenii]
Length = 216
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 7 EIKRLFRIRRTVMQMLRDRGY--FVGDFEINMSKEQFIAKFGENMK--REDLVINKALRN 62
EI LF+IRRT++QMLRDR Y F ++ MS+ F KF +N + R +L IN++
Sbjct: 7 EILNLFKIRRTILQMLRDRSYVVFENQDDLEMSRSSFEQKFVKNFQVIRSELEINRSKWL 66
Query: 63 DSSDQIYVFFPDEQK----VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI- 117
+ + +I V F + +K +GVK+++ + R+K + +I+V+ LT A+ I I
Sbjct: 67 EENMRILVVFIEGEKEKSAIGVKSIRGFCERIKQDGFQNSIIVLHGKLTSHAKQAINSIN 126
Query: 118 SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
S +E F E+EL+VNI EH LVP+H++++ EE + L KRY+++E Q+
Sbjct: 127 SLDDKIEYFSESELIVNITEHNLVPKHEIISEEEARCLFKRYSIRENQL 175
>gi|344302236|gb|EGW32541.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Spathaspora
passalidarum NRRL Y-27907]
Length = 214
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 104/175 (59%), Gaps = 10/175 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D I RLFR +TV +M+RDRGY++ EI+M+ ++F AK ++M +R+ +
Sbjct: 1 MDDNDRVISRLFRSFKTVKEMVRDRGYYITQEEIDMTLDEFRAKVCDSMGVPQRKLMCFQ 60
Query: 58 KALRNDSSDQ------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+S ++ ++V F DE VG+KTM+ + + +N + + Q ++TP A
Sbjct: 61 AQPTGESLEKFPDLGALWVEFCDEASVGIKTMRNFCIHITEKNFSTGLFIYQNSITPSAN 120
Query: 112 TCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
I +S +E FQE +L+VNI H LVP+H L+ +EKK LL+RY +KE+Q+
Sbjct: 121 KLIPTVSPA-SIETFQEGDLVVNITHHELVPKHIKLSKDEKKELLERYRLKESQL 174
>gi|67624263|ref|XP_668414.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis TU502]
gi|54659611|gb|EAL38180.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis]
gi|323509171|dbj|BAJ77478.1| cgd2_980 [Cryptosporidium parvum]
gi|323509997|dbj|BAJ77891.1| cgd2_980 [Cryptosporidium parvum]
Length = 205
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 10/168 (5%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
D R FR RRT+ +ML DRGY V + KE+ + F E + R +++ +
Sbjct: 2 DSSDNRFFRARRTLCEMLEDRGYIVS----SQDKEEDFSTFKERFESHQRLRSRMLMVAS 57
Query: 60 LRNDSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
R D + +I +F DE +K GVK ++ +M + RAIL+ Q LT A+ I + +
Sbjct: 58 HRQDQTKRIICYFADESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAA 117
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
K ++E F E ELLVNI +H LVP+H +L+++EK LL RY +KETQ+
Sbjct: 118 PKHYIESFLENELLVNITKHELVPKHILLSDDEKLQLLDRYKIKETQL 165
>gi|403218074|emb|CCK72566.1| hypothetical protein KNAG_0K02020 [Kazachstania naganishii CBS
8797]
Length = 215
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 10/169 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
++RL+R RT+ +M++DRGYF+ E+ +S E F K+ ++M R + N +
Sbjct: 9 VRRLWRTFRTIKEMVKDRGYFITQEEVELSLEDFKVKYCDSMGRPQRKMMSFQANPMEEA 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMK + ++ +N I V Q N+TP A + I
Sbjct: 69 IAKFPDMGSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQIGIFVYQNNVTPSAMKLVPSIP 128
Query: 119 AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F E L+VNI H LVP+H L+ +EKK LLKRY +KE+Q+
Sbjct: 129 PA-TIETFHETSLVVNITHHELVPKHIKLSTDEKKELLKRYRLKESQLP 176
>gi|354545760|emb|CCE42488.1| hypothetical protein CPAR2_201310 [Candida parapsilosis]
Length = 214
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 10/176 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D I RLFR +TV +M++DRGY++ E++M+ EQF AK M +R+ +
Sbjct: 1 MDDNDRAISRLFRTYKTVKEMVKDRGYYISQEELDMTLEQFRAKVCNTMGEPQRKLMCFQ 60
Query: 58 KALRNDSSDQ------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+ D+ ++V F DE VG+KTM+ + + +N I + Q +TP A
Sbjct: 61 ATPTAEQLDKFPDMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSVGIFIYQNGITPSAN 120
Query: 112 TCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
I + +E FQE +L+VNI H LVP+H L+ +EKK LL+RY +KE+Q+
Sbjct: 121 KLIPTVQPA-TIETFQENDLIVNITHHELVPKHIKLSRDEKKELLERYRLKESQLP 175
>gi|344230604|gb|EGV62489.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Candida
tenuis ATCC 10573]
gi|344230605|gb|EGV62490.1| hypothetical protein CANTEDRAFT_114816 [Candida tenuis ATCC 10573]
Length = 214
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE--NMKREDLVINK 58
M +D + RL+R +TV +M+RDRGY++ E++MS ++F K + NM + L+ +
Sbjct: 1 MDEADRSMSRLWRTFKTVKEMVRDRGYYISQEELDMSLDEFRQKICDSMNMPQRKLMCFQ 60
Query: 59 ALRNDSS-------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
A S ++V F DE VG+KTM+ + + N I + Q ++TP A
Sbjct: 61 ANPTAESLEKFPELGTLWVEFCDEDSVGIKTMRNFCIHISERNFSTGIFIYQSSITPSAN 120
Query: 112 TCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
I + A +E FQE++L+VNI H LVP+H L+ EKK LL RY +KE+Q+
Sbjct: 121 KLIPTV-APASIETFQESDLVVNITHHELVPKHIKLSKGEKKELLDRYRLKESQL 174
>gi|50426767|ref|XP_461981.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
gi|54036338|sp|Q6BIJ0.1|RPAB1_DEBHA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49657651|emb|CAG90451.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
Length = 214
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 100/175 (57%), Gaps = 10/175 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE--NMKREDLVINK 58
M +D I RL+R +TV +M+RDRGY++ EI+MS +F ++ + N+ + L+ +
Sbjct: 1 MEDTDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQ 60
Query: 59 ALRNDSS-------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
A S ++V F DE VG+KTM+ + + +N I + Q ++TP A
Sbjct: 61 ANPTAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSAN 120
Query: 112 TCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
I +S +E FQE +L+VNI H LVP+H L +EKK LL+RY +KE+Q+
Sbjct: 121 KLIPTVSPA-SIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQL 174
>gi|15230206|ref|NP_191267.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
gi|6911878|emb|CAB72178.1| putative protein [Arabidopsis thaliana]
gi|26452919|dbj|BAC43537.1| unknown protein [Arabidopsis thaliana]
gi|28973011|gb|AAO63830.1| unknown protein [Arabidopsis thaliana]
gi|332646091|gb|AEE79612.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
Length = 222
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 99/165 (60%), Gaps = 3/165 (1%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
LS EE R + RR +QMLRDRGY V D +IN+S F +GE + L I+ R+
Sbjct: 20 LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79
Query: 63 DSSDQIYVFFPDEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
DS+ ++ + F V V +++ + + E + ILV+Q ++T A I+ S F
Sbjct: 80 DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--F 137
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E+FQ +LLVNI +H L P+HQVL +EEK TLLK+++++E Q+
Sbjct: 138 KVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQL 182
>gi|448112295|ref|XP_004202060.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359465049|emb|CCE88754.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 10/175 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D + RL+R +TV +M+RDRGY++ EI MS ++F A ++M +R +
Sbjct: 1 MDDNDRTVSRLWRTFKTVKEMVRDRGYYITQEEIEMSLDEFRAHVCDSMGIPQRRLMCFQ 60
Query: 58 -----KALRN-DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+AL S ++V F DE VG+KTM+ + + +N I + Q ++TP A
Sbjct: 61 ANPTAEALEKFPSLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQASITPSAT 120
Query: 112 TCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
I +S +E FQE++L+VNI H LVP+H L+ +EKK LL RY +KE+Q+
Sbjct: 121 KLIPTVSPA-SIETFQESDLVVNITHHELVPKHIKLSKDEKKELLDRYRLKESQL 174
>gi|448525471|ref|XP_003869121.1| Rpb5 protein [Candida orthopsilosis Co 90-125]
gi|380353474|emb|CCG22984.1| Rpb5 protein [Candida orthopsilosis]
Length = 214
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 98/176 (55%), Gaps = 10/176 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM--KREDLVINK 58
M +D I RLFR +TV +M++DRGY++ E+ M+ EQF +K +M + L+ +
Sbjct: 1 MDDNDRAISRLFRTYKTVKEMVKDRGYYISQEELEMTLEQFRSKVCNSMGEPQRKLMCFQ 60
Query: 59 ALRNDSS-------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
A N ++V F DE VG+KTM+ + + +N I + Q +TP A
Sbjct: 61 ATPNAEQLEKFPDMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSVGIFIYQNGITPSAN 120
Query: 112 TCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
I + +E FQE +L+VNI H LVP+H L+ +EKK LL+RY +KE+Q+
Sbjct: 121 KLIPTVQPA-TIETFQENDLIVNITHHELVPKHIKLSRDEKKELLERYRLKESQLP 175
>gi|432855570|ref|XP_004068252.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Oryzias latipes]
Length = 159
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 85/163 (52%), Gaps = 46/163 (28%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
+EE RL++IR+T+MQ+ DRGY
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYL------------------------------------ 27
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++ K+ LE
Sbjct: 28 ----------EPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILE 77
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F + ELL+NI EH LVPEH V+T EE LL RY +KE+Q+
Sbjct: 78 QFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLP 120
>gi|164656180|ref|XP_001729218.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
gi|159103108|gb|EDP42004.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
Length = 159
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--MKREDLVINKALR 61
D E RL+R+ RT+ +++ DRGY V + E+N+ + F A+ N + R + +
Sbjct: 3 DDRETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQHK 62
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+ ++++VF+ E+ VGVKTM+ + N ++ +N+ R I++ +T A+ I+ + +
Sbjct: 63 DKPEERLFVFYSTERNVGVKTMRQFINILEEKNITRGIIIWSDKMTSAAKKVIEAMRLQL 122
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
LE F+EA LLVNI H LVP+H+VLT +EKK LL R
Sbjct: 123 VLEDFEEAFLLVNITHHQLVPKHEVLTPDEKKELLHR 159
>gi|326430122|gb|EGD75692.1| polymerase II polypeptide E [Salpingoeca sp. ATCC 50818]
Length = 201
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 97/161 (60%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
+++RL R T +Q+ DRGY V E+ SK +F +FG + + +L A + D +
Sbjct: 2 DVERLRRAYNTTVQLCSDRGYSVPHTEV--SKTEFEQRFGSDPRPSELDSVFAHKKDEQN 59
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI-SAKFHLEV 125
+I +F+ D+ K+G+ +K Y +++ + + I+V Q LTP A +++ SA ++V
Sbjct: 60 RIAIFWADDLKIGISKVKEYLDKLTQQGINAGIIVAQAKLTPSASKAVRDAASAGITVQV 119
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
F EL+VNI H LVP+H VL+ EEK+ LL+RY ++E Q+
Sbjct: 120 FDITELIVNITRHELVPQHVVLSKEEKQALLQRYKLQEQQL 160
>gi|448114850|ref|XP_004202684.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359383552|emb|CCE79468.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK---------R 51
M +D + RL+R +TV +M+RDRGY++ EI MS ++F A ++M +
Sbjct: 1 MDDNDRTVTRLWRTFKTVKEMVRDRGYYITQEEIEMSLDEFRAHVCDSMGIPQRRLMCFQ 60
Query: 52 EDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+ + + S ++V F DE VG+KTM+ + + +N I + Q ++TP A
Sbjct: 61 ANPTAEELEKFPSLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQASITPSAT 120
Query: 112 TCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
I +S +E FQE++L+VNI H LVP+H L+ +EKK LL RY +KE+Q+
Sbjct: 121 KLIPTVSPA-SIETFQESDLVVNITHHELVPKHIKLSKDEKKELLDRYRLKESQL 174
>gi|297817026|ref|XP_002876396.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322234|gb|EFH52655.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 222
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 3/164 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S EE R + R+ +QMLRDRGY V D +IN+S F A +GE + L I+ R+D
Sbjct: 21 SSEESHRYYLARQNALQMLRDRGYQVSDEDINLSLHDFRAVYGERPDVDRLRISAQHRSD 80
Query: 64 SSDQIYVFFPDEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
SS ++ V F V V +++ + + E V ILV+Q +T A I+ S F
Sbjct: 81 SSKKVKVVFFGTGMVKVNAIRSIAADVLSQETVTGLILVLQSQVTKQAMKAIELFS--FK 138
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E+FQ +LLVNI +H L P+H+VL ++EK TLLK+++++E Q+
Sbjct: 139 VEIFQITDLLVNITKHALKPQHRVLNDKEKTTLLKKFSIEEKQL 182
>gi|403332978|gb|EJY65550.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Oxytricha
trifallax]
Length = 215
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 15/170 (8%)
Query: 11 LFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD---- 66
L+R+R+TV+QML+DRGY V D ++ + E+F A F +L++ K + D +D
Sbjct: 9 LYRVRKTVLQMLKDRGYIVSDKKLKQTIEEFKATFNNTRDSLNLIVTKRQQVDPNDPNSQ 68
Query: 67 ---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
++ VFFPD +K+ + +K +M N F AI++++ T +R + E+
Sbjct: 69 VAQNSEEQQKLIVFFPDVEKLNMAALKQIAIKMLEVNCFNAIVIIK-GATQISRRELDEL 127
Query: 118 SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E F + ELLVNI EH LVP H+VL+++ K LLK+Y VK++Q+
Sbjct: 128 KP-CEIECFLQQELLVNITEHELVPRHEVLSDKAKHELLKKYRVKDSQLP 176
>gi|215399667|gb|ACJ65826.1| RNA polymerase II [Oreochromis niloticus]
Length = 108
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 75/107 (70%), Gaps = 5/107 (4%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDS 64
RL++IR+T+MQ+ DRGY V E++ + E+F ++FG+ +R DL + A +D
Sbjct: 1 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDP 60
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+
Sbjct: 61 TDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAK 107
>gi|167379694|ref|XP_001735242.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Entamoeba dispar SAW760]
gi|165902841|gb|EDR28561.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Entamoeba dispar SAW760]
Length = 204
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALRN 62
E + ++R +TV++MLRDRGY + + N + E F +F GE + ++L I N
Sbjct: 2 ENVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLT-PFARTCIQEISAKF 121
D++D I VFF + + + Y ++SE+V RAI+V + L+ P + Q K+
Sbjct: 62 DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVKW 121
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
E E EL+VN+ HVLVP+H +L+ EEK+ LLK+Y VKE+Q+
Sbjct: 122 --EALLEDELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQL 164
>gi|67469583|ref|XP_650770.1| RNA polymerase subunit Rpb5 [Entamoeba histolytica HM-1:IMSS]
gi|56467420|gb|EAL45380.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407044881|gb|EKE42883.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Entamoeba nuttalli P19]
gi|449705666|gb|EMD45670.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica KU27]
Length = 204
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALRN 62
E + ++R +TV++MLRDRGY + + N + E F +F GE + ++L I N
Sbjct: 2 ESVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLT-PFARTCIQEISAKF 121
D++D I VFF + + + Y ++SE+V RAI+V + L+ P + Q K+
Sbjct: 62 DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVKW 121
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
E E EL+VN+ H+LVP+H +L+ EEK+ LLK+Y VKE+Q+
Sbjct: 122 --EALLEDELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQL 164
>gi|21617912|gb|AAM66962.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
Length = 222
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 99/165 (60%), Gaps = 3/165 (1%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
LS EE R + RR +Q+LRDRGY V D +IN+S F +GE + L I+ R+
Sbjct: 20 LSSEESHRYYLARRNGLQILRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79
Query: 63 DSSDQIYVFFPDEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
DS+ ++ + F V V +++ + + E + ILV+Q ++T A I+ S F
Sbjct: 80 DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--F 137
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E+FQ +LLVNI +H L P+HQVL +EEK TLLK+++++E Q+
Sbjct: 138 KVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQL 182
>gi|195635599|gb|ACG37268.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 264
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 1/160 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT ++MLRDRGY V + E+ + +F A + + E L + L +D S
Sbjct: 66 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLASDPSS 125
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ V F V + ++ +K EN+ R IL++Q + R I+EI +F ++ F
Sbjct: 126 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 184
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
Q ELLVNI +HVL P+H+VLT E K LLK Y V ++Q+
Sbjct: 185 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQL 224
>gi|414588639|tpg|DAA39210.1| TPA: DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 263
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 1/161 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT ++MLRDRGY V + E+ + +F A + + E L + L +D S
Sbjct: 65 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLTSDPSS 124
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ V F V + ++ +K EN+ R IL++Q + R I+EI +F ++ F
Sbjct: 125 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 183
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
Q ELLVNI +HVL P+H+VLT E K LLK Y V ++Q+
Sbjct: 184 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLP 224
>gi|226491902|ref|NP_001141853.1| uncharacterized protein LOC100273995 [Zea mays]
gi|194706176|gb|ACF87172.1| unknown [Zea mays]
Length = 248
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 1/161 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT ++MLRDRGY V + E+ + +F A + + E L + L +D S
Sbjct: 50 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLTSDPSS 109
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ V F V + ++ +K EN+ R IL++Q + R I+EI +F ++ F
Sbjct: 110 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 168
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
Q ELLVNI +HVL P+H+VLT E K LLK Y V ++Q+
Sbjct: 169 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLP 209
>gi|385301817|gb|EIF45980.1| dna-directed rna polymerases ii 24 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 194
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 10/156 (6%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVINKALRNDSSDQ------IYVF 71
M++DRGY++ EI++ +QF KF ++M +R+ + D+ ++ ++V
Sbjct: 1 MVKDRGYYIPQEEIDLPLDQFREKFCDSMGVPQRKLMSFQATPTQDALEKYGDLGPLWVE 60
Query: 72 FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAEL 131
F DE VG++TMK + + +N I + QQN+TP A I ++ +E+FQE+E+
Sbjct: 61 FCDEPSVGIQTMKNFCAHIADKNFSTGIFIYQQNMTPSATKAI-AVAEPATIEIFQESEI 119
Query: 132 LVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+VNI H LVP+H L+NEEK LLKRY +KE+Q+
Sbjct: 120 VVNITHHELVPKHIRLSNEEKIDLLKRYRLKESQLP 155
>gi|50550027|ref|XP_502486.1| YALI0D06457p [Yarrowia lipolytica]
gi|54036340|sp|Q6CA26.1|RPAB1_YARLI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49648354|emb|CAG80674.1| YALI0D06457p [Yarrowia lipolytica CLIB122]
Length = 212
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 105/178 (58%), Gaps = 18/178 (10%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+S ++ ++L+++ RT ++++DRGY + D E+N+S +QF+++ + M + I K +
Sbjct: 1 MSSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKP---IKKKMCF 57
Query: 63 DSSDQ------------IYVFFPDEQKVGVKTMKTYTNRMKSENVFR-AILVVQQNLTPF 109
+S I+V F +E V VKTM+ + + SEN F ILV + N+TP
Sbjct: 58 MASPSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHI-SENKFATGILVYENNMTPS 116
Query: 110 ARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
A I + A ++ FQE +LLVNI +HVLVP H L+ EKK LL+RY +KE+Q+
Sbjct: 117 ANRLIPSV-APATIDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLP 173
>gi|406866728|gb|EKD19767.1| RNA polymerase subunit [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 231
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 25/183 (13%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGY------------------FVGDFEINMSKEQFIAKF 45
D E RL+R RTV +M+ DRGY + D IN QF A+
Sbjct: 14 GDREAARLWRAWRTVHEMVADRGYELSEEEVKISFADFKSTYTLADGSINRKGMQFSARP 73
Query: 46 GENMKREDLVINKALRNDSSD--QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
+ M ++ AL + +SD ++V F +E VG+K M+T+ + + ILV
Sbjct: 74 SDKMMKQ-----YALPDGTSDIGTVWVEFLNETNVGIKQMRTFAQYCSANSFATGILVTA 128
Query: 104 QNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
+TP A I ++++ +E F +A+LLVNI H LVP+H L+ +EKK LL+RY +K+
Sbjct: 129 VTITPAALKIIPAVASETRIECFMDADLLVNITHHELVPKHITLSRDEKKALLERYRLKD 188
Query: 164 TQV 166
TQ+
Sbjct: 189 TQL 191
>gi|167516220|ref|XP_001742451.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779075|gb|EDQ92689.1| predicted protein [Monosiga brevicollis MX1]
Length = 210
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 97/162 (59%), Gaps = 6/162 (3%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRE-DLVINKALRNDSSDQI 68
RL+++ T+ QM DRG+ V +NM+ + + +GE ++E + K +D +D +
Sbjct: 9 RLYKVWITLKQMCHDRGFRVTQEMMNMTFDTWNEIYGEYPRKELSFPVQKV--DDDNDGL 66
Query: 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI---SAKFHLEV 125
+VFFP+ V V +K+ +R+KS+N+ RAI+V Q+ + P A++ I + + +E
Sbjct: 67 FVFFPESPDVKVAAIKSLYDRLKSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPPYIVET 126
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F EAEL+ N+ H LVP H++L EK+ LL+RY V E ++
Sbjct: 127 FAEAELVYNVTRHHLVPHHEILKESEKQQLLERYCVSEDRLP 168
>gi|297739911|emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 99/161 (61%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT+++MLRDRGY + +I++S + F + + + + L I+ ALR+D S
Sbjct: 132 ESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLRISAALRSDPSK 191
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRM-KSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V +++ ++ +++ + ILV+Q ++T A + S F +E
Sbjct: 192 KILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFS--FQVEK 249
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
FQ +LLVNI +HVL P+H+VLT++EK LLK+Y++ E Q+
Sbjct: 250 FQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQL 290
>gi|359482221|ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 99/161 (61%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT+++MLRDRGY + +I++S + F + + + + L I+ ALR+D S
Sbjct: 31 ESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLRISAALRSDPSK 90
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRM-KSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V +++ ++ +++ + ILV+Q ++T A + S F +E
Sbjct: 91 KILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFS--FQVEK 148
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
FQ +LLVNI +HVL P+H+VLT++EK LLK+Y++ E Q+
Sbjct: 149 FQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQL 189
>gi|449437743|ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 227
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R F RRTV++ML+DRGY + I+ S +QF FG+ + L ++ A +D S
Sbjct: 29 ESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDRLKLSAAHHSDPSK 88
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLEV 125
++ V F V V ++ ++ +++ IL+VQ +T A ++ S F +E+
Sbjct: 89 RVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFS--FKVEI 146
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
FQ +LLVNI +H L P HQVLT EEK+ LLK+Y+++E Q+
Sbjct: 147 FQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQL 187
>gi|296232401|ref|XP_002761575.1| PREDICTED: uncharacterized protein LOC100393628 [Callithrix
jacchus]
Length = 323
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 69/101 (68%)
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
Q + +E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 184 QAGILSTEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQF 243
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ ELL+NI EH LVPEH V+T EE LL RY ++E Q+
Sbjct: 244 LQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLP 284
>gi|154276568|ref|XP_001539129.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150414202|gb|EDN09567.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 236
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + EI +S ++F ++ + + D
Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKISLDEFRTRYSDALGFPDRNKMKISARP 72
Query: 54 -----------LVINKALRNDSSDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+K IYV F D Q VG K ++ + + + +N I V
Sbjct: 73 SQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGIFV 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I +F E FQE ELLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 133 SQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191
Query: 162 KETQVS 167
KE+Q+
Sbjct: 192 KESQLP 197
>gi|255576548|ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 238
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E R + RRTV++MLRDRGY V EI++S ++F A G N + L + +D S
Sbjct: 39 HETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPS 98
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLE 124
++ V F + V T++ ++ +++ ILV+Q +T A + KF +E
Sbjct: 99 KRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAVDLF--KFKVE 156
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+FQ +LLVNI +HVL P+HQVLT+ EK+ LLK Y ++E Q+
Sbjct: 157 MFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQL 198
>gi|320590726|gb|EFX03169.1| RNA polymerase subunit [Grosmannia clavigera kw1407]
Length = 237
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMS------------------KEQFIAKFGEN 48
E+++L+R RTV +M +DRGY + + E+ +S K QF A+ E+
Sbjct: 17 ELRKLWRAWRTVHEMCQDRGYELAEDEVKISFDDFVRQFSLPDGTADRGKMQFSARPSES 76
Query: 49 MKREDLVINKALRNDSSDQ---IYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQ 104
M ++ A R D + I+V F EQ++GVK +K + SEN FRA I+V Q
Sbjct: 77 MIKKFTPPPTAARPDPPTECGTIWVEFMTEQQIGVKEIKRFLQHC-SENSFRAGIMVTQG 135
Query: 105 NLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKET 164
L+ AR I +E F + +LLVNI H LVP H +L+ EEK LL RY +KET
Sbjct: 136 ALSAQARKVINATMMYTQIECFMQDDLLVNITHHELVPTHVLLSKEEKTALLSRYRLKET 195
Query: 165 QVS 167
Q+
Sbjct: 196 QLP 198
>gi|425770508|gb|EKV08978.1| hypothetical protein PDIP_66930 [Penicillium digitatum Pd1]
gi|425771874|gb|EKV10306.1| hypothetical protein PDIG_57390 [Penicillium digitatum PHI26]
Length = 234
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
++ E+ RL+R RTV ++L DRGY V D E+ + E F AK+ + + D
Sbjct: 11 AEREMTRLWRTFRTVYELLADRGYEVSDNELVLPLEDFRAKYADPLGYPDRTKMKIQARP 70
Query: 54 ---------LVINKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ +KA N D IYV F PD VG K ++ + + + N I +
Sbjct: 71 TETMKLKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFI 130
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + + + E FQE +LLVNI H LVP+H +L+ EEK LL+RY +
Sbjct: 131 TQTPISPSAVRLLSGVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKGKLLERYRL 189
Query: 162 KETQVS 167
KE+Q+
Sbjct: 190 KESQLP 195
>gi|261200923|ref|XP_002626862.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239593934|gb|EEQ76515.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607191|gb|EEQ84178.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327351148|gb|EGE80005.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 236
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + EI + ++F ++ + + D
Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72
Query: 54 --------LVINKALRNDS---SDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ L+ + IYV F PD VG K ++ + + + +N I +
Sbjct: 73 SQAMMDRYTPLPTTLKPNPVPECGTIYVEFCPDIHSVGTKQVRAFNHFIDEQNYHTGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I +F E FQE ELLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 133 SQTPISPSAIRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191
Query: 162 KETQVS 167
KE+Q+
Sbjct: 192 KESQLP 197
>gi|225560287|gb|EEH08569.1| RNA polymerase subunit [Ajellomyces capsulatus G186AR]
gi|240279038|gb|EER42544.1| RNA polymerase subunit [Ajellomyces capsulatus H143]
gi|325090297|gb|EGC43607.1| RNA polymerase subunit [Ajellomyces capsulatus H88]
Length = 236
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + EI + ++F ++ + + D
Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72
Query: 54 -----------LVINKALRNDSSDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+K IYV F D Q VG K ++ + + + +N I V
Sbjct: 73 SQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGIFV 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I +F E FQE ELLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 133 SQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191
Query: 162 KETQVS 167
KE+Q+
Sbjct: 192 KESQLP 197
>gi|87162511|gb|ABD28306.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
Length = 224
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 99/164 (60%), Gaps = 3/164 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+ E R F R+T+M ML DRGY V + ++ +S +F ++FGE K L ++ +LR++
Sbjct: 23 SNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFPKPHTLGVSVSLRSN 82
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRM-KSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S ++ V FP + + +++ E + R ILV+Q +T +AR ++ + F
Sbjct: 83 PSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSKMTSYARKELE--NCPFK 140
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E+ Q +LLVN+ +HVL P+++VLT EK+ LL +Y V+E Q+
Sbjct: 141 VEIIQLNDLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQL 184
>gi|255941598|ref|XP_002561568.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586191|emb|CAP93939.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 234
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
++ E+ RL+R RTV ++L DRGY V D E+ + E F AK+ + + D
Sbjct: 11 AEREMTRLWRTFRTVYELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRTKMKIQARP 70
Query: 54 ---------LVINKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ +KA N D IYV F PD VG K ++ + + + N I +
Sbjct: 71 TETMKMKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFI 130
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + + + E FQE +LLVNI H LVP+H +L+ EEK LL+RY +
Sbjct: 131 TQTPISPSAVRLLSGVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLERYRL 189
Query: 162 KETQVS 167
KE+Q+
Sbjct: 190 KESQLP 195
>gi|226289047|gb|EEH44559.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb18]
Length = 236
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ +L+R RTV +ML DRGY V + EI + E+F ++ + + D
Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPDRNKMKISARP 72
Query: 54 -----------LVINKALRNDSSDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
++K IYV F D Q VG K ++ + + + +N I +
Sbjct: 73 SQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I +F E FQE ELLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 133 SQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRYRL 191
Query: 162 KETQVS 167
KE+Q+
Sbjct: 192 KESQLP 197
>gi|8896071|gb|AAF81222.1| RPB5d [Brassica napus]
Length = 223
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 12 FRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVF 71
+ RRT M+MLRDRGY + + +IN++ ++F A +G+ + L I+ +DSS +I V
Sbjct: 29 YLARRTTMEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDRLRISAQHCSDSSKKIAVV 88
Query: 72 FPDEQKVGVKTMK-TYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAE 130
F V V ++ + + EN+ ILV+Q ++T A ++ S F +E+FQ E
Sbjct: 89 FCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAVELFS--FKVELFQLTE 146
Query: 131 LLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
LLVNI +HVL P+H VL +EK++L K+++++E Q+
Sbjct: 147 LLVNITKHVLRPKHHVLNEQEKESLFKKFSIQEQQL 182
>gi|452981679|gb|EME81439.1| hypothetical protein MYCFIDRAFT_70882 [Pseudocercospora fijiensis
CIRAD86]
Length = 227
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 25/188 (13%)
Query: 3 LSDE---EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE------------ 47
+SDE E+ RL+R+ RT QM DRGY + D E N+S E+F ++ +
Sbjct: 1 MSDENSRELSRLWRVLRTTKQMCSDRGYELTDEECNISLEEFRQQYADESGAPSRVKMAF 60
Query: 48 NMKREDLVINK--ALRNDSSDQ-------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRA 98
+ D +I K ++ D+ I+V F ++ +G+K +K + + + +N +
Sbjct: 61 TARPSDAMIKKYTPIQRPGQDEKPPEIGTIHVEFSNDASIGIKQLKQFASNLADKNYYTG 120
Query: 99 ILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
I V Q T A I + +E+F+E +LLVNI H LVP+H +L+ EEK+ LL+R
Sbjct: 121 IYVSQVQPTSAALKIIPSVHP-LIMEIFKEDDLLVNISRHELVPKHILLSQEEKRGLLER 179
Query: 159 YTVKETQV 166
Y +KETQ+
Sbjct: 180 YRLKETQL 187
>gi|452840713|gb|EME42651.1| hypothetical protein DOTSEDRAFT_73472 [Dothistroma septosporum
NZE10]
Length = 228
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 25/188 (13%)
Query: 4 SDE---EIKRLFRIRRTVMQMLRDRGYFVGDFEINMS------------------KEQFI 42
SDE E+ RL+R+ RT QM DRGY + + E N+S + F
Sbjct: 3 SDEVSRELSRLWRVLRTTKQMCADRGYELTEEECNISLDDFRQQYADETGAPQRTRMAFT 62
Query: 43 AKFGENMKREDLVINKALRNDSSDQI---YVFFPDEQKVGVKTMKTYTNRMKSENVFRAI 99
A+ ENM+++ + + + +++ I +V F ++ +G+K +K + + +N + I
Sbjct: 63 ARPSENMQKKYMPLQRPGQSEGEPAIGTIHVEFSNDANIGIKHIKQFAQVLSEKNYYTGI 122
Query: 100 LVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRY 159
V TP A I I +E+F+E +LLVNI +H LVP+H +L+ EEKK LL+RY
Sbjct: 123 FVSAVAPTPAAMKIIPSILPTV-MEIFREEDLLVNISKHELVPKHVLLSPEEKKGLLERY 181
Query: 160 TVKETQVS 167
+KETQ+
Sbjct: 182 RLKETQLP 189
>gi|440634485|gb|ELR04404.1| hypothetical protein GMDG_01480 [Geomyces destructans 20631-21]
Length = 236
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 21/186 (11%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG---------------- 46
++D E+ RL+R RTV QM+ DRGY + + E+++S +F +F
Sbjct: 12 IADREVARLWRAWRTVHQMVNDRGYELNEDELSISLAEFKHRFTNDGVPDRKKMIFTARP 71
Query: 47 --ENMKREDLVINKALRNDSS---DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
E + R A N IY+ F + VG+K M+++ + N ILV
Sbjct: 72 SVEMVARYSTPATAANPNPPKADVGTIYIEFLADTNVGIKQMRSFAQVLSQGNFHTGILV 131
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
++TP A + ++++ +E F E +LLVNI H LVP+H +L+ EE+ LL+RY +
Sbjct: 132 THVHITPAAMKIVPAVASETRIECFLEQDLLVNITHHELVPKHVLLSKEERSKLLQRYRL 191
Query: 162 KETQVS 167
K+TQ+
Sbjct: 192 KDTQLP 197
>gi|396500613|ref|XP_003845762.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
gi|312222343|emb|CBY02283.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
Length = 412
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 34/193 (17%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
+ I RL+R+ RT +M+RDRGY V + + MS +F +KFG RED +++ N
Sbjct: 6 ASPSIIRLWRVWRTAKEMMRDRGYMVLEEDTTMSLAEFTSKFG----REDGEPDRSRLNF 61
Query: 64 SS-------------------------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA 98
S I+V F ++ VG+K ++ Y + + N +
Sbjct: 62 SCLPSEEMLAKYTPAPTKKDPNPVPQIGSIWVEFNSDENVGLKQLRDYMGHLLNGNFYSG 121
Query: 99 ILVVQQNLTPFARTCIQEISA-----KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKK 153
+++ Q +T A ++ ++ K +EVF E +LLVNI +H LVP+H +L+ EEK+
Sbjct: 122 VMITVQAMTGMAIRLLRGATSMSDGPKGGVEVFVEQDLLVNITKHELVPKHVLLSAEEKQ 181
Query: 154 TLLKRYTVKETQV 166
LLKRY +KETQ+
Sbjct: 182 QLLKRYRLKETQL 194
>gi|295671500|ref|XP_002796297.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284430|gb|EEH39996.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
Length = 236
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ +L+R RTV +ML DRGY V + EI + ++F ++ + + D
Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72
Query: 54 -----------LVINKALRNDSSDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
++K IYV F D Q VG K ++ + + + +N I +
Sbjct: 73 SQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I +F E FQE ELLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 133 SQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRYRL 191
Query: 162 KETQVS 167
KE+Q+
Sbjct: 192 KESQLP 197
>gi|440302517|gb|ELP94824.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Entamoeba invadens IP1]
Length = 217
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 94/163 (57%), Gaps = 5/163 (3%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG---ENMKREDLVINKALRNDS 64
+ R++ + +TV+ ML+DRGY D + + ++F + G + + R L I KA+R S
Sbjct: 16 LTRVYHVWKTVLDMLKDRGYVTNDLDHQTTLDEFRERVGVGADGVDRGKLTI-KAVREGS 74
Query: 65 SDQ-IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
+D I V F + K+ + ++Y ++ + RAI+V + L+ + K
Sbjct: 75 ADDGIIVLFAKDDKMKTEVFRSYAEEVQGQECKRAIVVYRGQLSSVIVQFVNSSEQKVKW 134
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
E+ E EL+VN+ +HVLVPEH LT+EEK+ +LK+Y VKE+Q+
Sbjct: 135 ELLLEDELIVNVTKHVLVPEHIKLTDEEKQAVLKKYQVKESQL 177
>gi|224139746|ref|XP_002323257.1| predicted protein [Populus trichocarpa]
gi|222867887|gb|EEF05018.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 95/161 (59%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRTV++ML+DRGY V EI++S + F +G+N E L + ++D S
Sbjct: 18 ESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIELLKFSATHKSDPSK 77
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLEV 125
++ V F V V ++ T ++ + ILV+Q N+T A + KF +E+
Sbjct: 78 RMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKALDLF--KFKIEI 135
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
FQ +LLVNI +H+L P+HQVL+ + K+ LLK+Y+++E Q+
Sbjct: 136 FQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQL 176
>gi|119186603|ref|XP_001243908.1| hypothetical protein CIMG_03349 [Coccidioides immitis RS]
gi|303317654|ref|XP_003068829.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108510|gb|EER26684.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038831|gb|EFW20766.1| DNA-directed RNA polymerase 1 [Coccidioides posadasii str.
Silveira]
gi|392870629|gb|EAS32444.2| DNA-directed RNA polymerase II polypeptide [Coccidioides immitis
RS]
Length = 236
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + E+N+ +F K+ + + D
Sbjct: 13 ADREMTRLWRTWRTVFEMLLDRGYEVTEEEVNVPLAEFRTKYSDALGFPDRNKMRISARP 72
Query: 54 ---------LVINKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ + A N + IYV F D Q VG K ++ + + + +N I +
Sbjct: 73 SQTMIEKYTPLASPAKPNPVPECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I +F E F E ELLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 133 TQSPISPSAIRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191
Query: 162 KETQVS 167
KE+Q+
Sbjct: 192 KESQLP 197
>gi|145230680|ref|XP_001389604.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus niger CBS 513.88]
gi|134055723|emb|CAK44096.1| unnamed protein product [Aspergillus niger]
gi|350638607|gb|EHA26963.1| hypothetical protein ASPNIDRAFT_205564 [Aspergillus niger ATCC
1015]
gi|358370671|dbj|GAA87281.1| RNA polymerase subunit [Aspergillus kawachii IFO 4308]
Length = 235
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + E+ M +F K+ + + D
Sbjct: 12 ADREMTRLWRTWRTVFEMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDRNKMKISARP 71
Query: 54 ---------LVINKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ +K+ N D IYV F PD VG K ++T+ + + N + +
Sbjct: 72 TEAMQAKYTPLPSKSNPNPQPDCGTIYVEFCPDSTGVGTKQVRTFNHFVDENNFHTGVFI 131
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + + + E FQE +LLVNI H LVP+H +L+ +EK LL+RY +
Sbjct: 132 TQTPISPSAVRLLSSMPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPDEKARLLERYRL 190
Query: 162 KETQVS 167
KE+Q+
Sbjct: 191 KESQLP 196
>gi|317137040|ref|XP_003190012.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus oryzae RIB40]
Length = 235
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 27/188 (14%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINK----- 58
+D E+ RL+R RTV +ML+DRGY V + E+ +S E+F K+ + + D NK
Sbjct: 12 ADREMTRLWRTWRTVFEMLQDRGYEVTEEEVQISLEEFKQKYSDPLGYPDR--NKMKVQA 69
Query: 59 -----------ALRNDSSDQ-------IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAI 99
A++ +++ IYV F PD VG K ++ + + + N +
Sbjct: 70 RPTEAMQHKYTAIKTNANPDPQPDCGIIYVEFCPDSTGVGTKQVRAFNHVVDENNFHTGV 129
Query: 100 LVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRY 159
+ Q ++P A + + + E FQE +LLVNI H LVP+H +L+ EEK LL RY
Sbjct: 130 FITQTPISPSAVRLLSGVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLARY 188
Query: 160 TVKETQVS 167
+KE+Q+
Sbjct: 189 RLKESQLP 196
>gi|378727418|gb|EHY53877.1| DNA-directed RNA polymerase II subunit E [Exophiala dermatitidis
NIH/UT8656]
Length = 238
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 98/187 (52%), Gaps = 23/187 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---------MKREDL 54
++E+ RL+R RTV++ML DRGY + E+ ++++ F KFG+ MK + +
Sbjct: 13 GEKELTRLWRTWRTVLEMLVDRGYAIAQDELAITRDDFQRKFGDPSTGHVERRLMKLQAV 72
Query: 55 VINKALRNDS-------------SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ ++ D+ + I+V F E +G+K ++ + + + I +
Sbjct: 73 PTEEMIKRDTPRPTKSNPNPQTTAGTIWVEFSPETTIGIKHLRAFAQHLDANKFTTGIFI 132
Query: 102 VQQNLTPFARTCIQEISAK-FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYT 160
+T A + ++ + E FQE++LLVNI H LVP+H +L+ EEKK LL RY
Sbjct: 133 TISPVTAAALRAFEPLAERGITAEWFQESDLLVNITRHELVPKHVLLSAEEKKVLLDRYR 192
Query: 161 VKETQVS 167
+KETQ+
Sbjct: 193 LKETQLP 199
>gi|367046000|ref|XP_003653380.1| hypothetical protein THITE_2170468 [Thielavia terrestris NRRL 8126]
gi|347000642|gb|AEO67044.1| hypothetical protein THITE_2170468 [Thielavia terrestris NRRL 8126]
Length = 234
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 24/185 (12%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEI------------------NMSKEQFIAKFGE 47
+E+ RL+R RT+ +M++DRGY + + E+ N +K QF A+ E
Sbjct: 12 KEVTRLWRAWRTIHEMVQDRGYELAEEEVKISLDRFRAEYTNDDGSPNRAKMQFSARPSE 71
Query: 48 NMKREDLVINKALRNDSSDQ---IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
M ++ A D + + I+V F PD+ +G+ MK + N ILV
Sbjct: 72 AMIKKFTPPPTAANPDPAPECGTIWVEFCPDKGSIGISVMKKFVEHCAQNNFRAGILVTA 131
Query: 104 QNLTPFARTCIQEISAKFHL-EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
L+ AR + ++++F L E F E +LLVNI H LVP+H +L+ EEK LLKRY +K
Sbjct: 132 VALSAQARK-VMTVTSQFTLIECFLEEDLLVNITHHELVPKHVLLSREEKAALLKRYRLK 190
Query: 163 ETQVS 167
ETQ+
Sbjct: 191 ETQLP 195
>gi|255544029|ref|XP_002513077.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223548088|gb|EEF49580.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 239
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 101/161 (62%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E +R + R+TVM+MLRDRGY V D E+ S +F+++FG+N L I+ +L +
Sbjct: 41 ESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILKLRISASLHSHPDK 100
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKS-ENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
++ V F +++ + ++ ++K+ E++ IL++Q + +AR + + +K +E+
Sbjct: 101 KMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSK--VEI 158
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
F ++LLVNI +HVL P H+VLT E+K+ LL +++ ++ Q+
Sbjct: 159 FHISDLLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQL 199
>gi|407928431|gb|EKG21288.1| RNA polymerase subunit H/Rpb5 [Macrophomina phaseolina MS6]
Length = 227
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 26/186 (13%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---MKREDLVINK 58
T ++ E RL+R RT +M+ DRGY + + E ++ ++F AKFG++ + R+ L
Sbjct: 7 TEAEREASRLWRAWRTAHEMIADRGYIMSESEYKITLDEFRAKFGDSSGYVDRKQL---- 62
Query: 59 ALRNDSSDQ------------------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAIL 100
A + SD+ I+V F +Q +GVK ++ + + + N I
Sbjct: 63 AFSANPSDEMKQKHFNPRKPKESEVGNIWVEFNGDQNIGVKQLRNFGHTLNEHNFSSGIF 122
Query: 101 VVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYT 160
+ +T A+ I + +E+F E +LLVNI +H LVP+H +L+ EEK LL RY
Sbjct: 123 ITAVPVTGAAQKIIPSLHPLI-MEIFMEQDLLVNITQHELVPKHVLLSAEEKAALLARYR 181
Query: 161 VKETQV 166
+KE+Q+
Sbjct: 182 LKESQL 187
>gi|260943051|ref|XP_002615824.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
gi|238851114|gb|EEQ40578.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
Length = 287
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 11/163 (6%)
Query: 14 IRRTVMQMLRDRGYFVGDFEINMSKEQFIAK---FGENMKREDLVINKALRNDSSDQ--- 67
IR + + D GY++ D EINM+ ++F AK GE +R+ + +++++
Sbjct: 88 IRTKIWKSSGDIGYYITDEEINMTLDEFKAKICPMGE-AQRKLMCFQAQPTPEAAEKFPE 146
Query: 68 ---IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
++V F DE VG+KTM+ + + +N I + Q ++TP A I +S +E
Sbjct: 147 MGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQTSITPSANKLIPTVSPA-TIE 205
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
VFQE++L+VNI H LVP+H L+ EKK LL RY +KE+Q+
Sbjct: 206 VFQESDLVVNITHHELVPKHIRLSKPEKKELLDRYRLKESQLP 248
>gi|121701167|ref|XP_001268848.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
gi|119396991|gb|EAW07422.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
Length = 234
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINK-ALRN 62
+D E+ RL+R RTV +ML DRGY V + EI + E+F K+ + + D K + R
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKISARP 70
Query: 63 DSSDQ--------------------IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
++ Q IYV F D VG K ++ + + + N + +
Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSSGVGTKQVRAFNHFVDENNFHTGVFI 130
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I + E FQE +LLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189
Query: 162 KETQVS 167
KE+Q+
Sbjct: 190 KESQLP 195
>gi|258563314|ref|XP_002582402.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237907909|gb|EEP82310.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 239
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 26/189 (13%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
++ E+ RL+R +TV +ML DRGY V + E+ +S F +K+ + + D +R
Sbjct: 13 ANREMTRLWRTWKTVFEMLLDRGYEVTEEEVKISLNDFRSKYADTLGFPDAPSRNKMRIS 72
Query: 64 S------------------------SDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRA 98
+ IYV F D Q VG K ++ + + + +N
Sbjct: 73 ARPSQAMIEKYTPLPSPAKPNPVAECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTG 132
Query: 99 ILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
I + Q ++P A + I +F E F E ELLVNI H LVP+H +L+ EEKK LL R
Sbjct: 133 IFITQSPISPSAVRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHR 191
Query: 159 YTVKETQVS 167
Y +KE+Q+
Sbjct: 192 YRLKESQLP 200
>gi|340959991|gb|EGS21172.1| RNA polymerases I, II, and III-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 547
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 32/189 (16%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
++E+ RL+R RTV +M++DRGY + D E+ +S E+F A++ ED N+A S
Sbjct: 11 EKEVTRLWRAWRTVHEMVQDRGYELADEEVKISLERFKAEY----TNEDGSPNRAKMQFS 66
Query: 65 S-------------------------DQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRA 98
+ I+V F P++ +G+ MK + N
Sbjct: 67 ARPSEAMIKKFTPPPTPQNPDPQPECGTIWVEFCPEKTSIGISVMKKFVEHCAQNNFKAG 126
Query: 99 ILVVQQNLTPFARTCIQEISAKFHL-EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLK 157
ILV L+ AR + ++++F L E F E +LLVNI H LVP+H +L+ EEK LLK
Sbjct: 127 ILVTAVALSSQARK-VMTVTSQFTLIECFLEEDLLVNITHHELVPKHILLSREEKAALLK 185
Query: 158 RYTVKETQV 166
RY +KETQ+
Sbjct: 186 RYRLKETQL 194
>gi|340377817|ref|XP_003387425.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Amphimedon queenslandica]
Length = 143
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 60/82 (73%)
Query: 86 YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQ 145
Y RM+ EN+ RAI+VVQQ +TP A+ + +++ K+ LE F EAEL++NI EH LVPEH
Sbjct: 23 YCGRMQEENISRAIIVVQQGMTPSAKQALVDMAPKYILEQFMEAELMINITEHELVPEHI 82
Query: 146 VLTNEEKKTLLKRYTVKETQVS 167
V+T EEK+ LL RY +KE Q+
Sbjct: 83 VMTTEEKRELLARYKLKEHQLP 104
>gi|297742693|emb|CBI35146.3| unnamed protein product [Vitis vinifera]
Length = 731
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 2/159 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT+ QML DRGY V E+ S F A FG N L I L + S
Sbjct: 534 ESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLRICLPLISSPSK 593
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+I V F ++ ++ ++ E + R ILV+Q + AR + E K +E F
Sbjct: 594 KILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFF 651
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQ 165
Q ELL+NI +HV VP+H++L+ +EK+ L+ +Y +++ Q
Sbjct: 652 QITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQ 690
>gi|342884561|gb|EGU84768.1| hypothetical protein FOXB_04663 [Fusarium oxysporum Fo5176]
Length = 236
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 23/185 (12%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVG------------------DFEINMSKEQFIAKFGE 47
+E+ RL+R RT+ +M+ DR Y + D IN +K QF A+ E
Sbjct: 13 KEVVRLWRAWRTIHEMVADREYELAEEEVKISLDRFRDEYCNPDGSINRAKLQFSARPSE 72
Query: 48 NMKREDLVINKALR---NDSSD--QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVV 102
NM R++ A N +D ++V F ++ GV ++ + + + N I+V
Sbjct: 73 NMIRKNTPPVTAANPNPNPGADCGPVWVEFLADKTFGVNQIRQFAKYVITNNYKTGIMVT 132
Query: 103 QQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
L+P AR +Q + + +E F E +LLVNI H LVP+H +L+ EEK LLKRY +K
Sbjct: 133 HVPLSPAARKTLQSVESVAKIECFLEDDLLVNITHHELVPKHVLLSREEKLALLKRYRLK 192
Query: 163 ETQVS 167
ETQ+
Sbjct: 193 ETQLP 197
>gi|443920437|gb|ELU40353.1| hypothetical protein AG1IA_05623 [Rhizoctonia solani AG-1 IA]
Length = 133
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 18/134 (13%)
Query: 25 RGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMK 84
+GY V + E+NM + F + F +D ++QI++FF DE+ V +KT+
Sbjct: 18 QGYLVAEDEMNMDIQTFKSTF----------------DDPTNQIFIFFADEKNVTIKTI- 60
Query: 85 TYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEH 144
+ + + + I+V + +TP AR I +S+++ LE F EA+LLVNI H LVP+H
Sbjct: 61 -FLGILDEKGITHGIIVFMEKMTPSARKVISAMSSQYSLEEFAEADLLVNITHHKLVPQH 119
Query: 145 QVLTNEEKKTLLKR 158
QVLT EKK LL+R
Sbjct: 120 QVLTQVEKKALLER 133
>gi|154292350|ref|XP_001546750.1| hypothetical protein BC1G_14664 [Botryotinia fuckeliana B05.10]
Length = 242
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 24/186 (12%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-------------MKR 51
D E +L+R RTV +M++DRGY + + E+NMS + F +KF N
Sbjct: 16 DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKSKFTSNDGSVDRRQMNFSATPS 75
Query: 52 EDLVINKALR------NDSSDQIYVFFPD-----EQKVGVKTMKTYTNRMKSENVFRAIL 100
E ++ A+ N ++ +I + + + +G+K M+T+ + N IL
Sbjct: 76 EAMIARYAVAPTAENPNPTTSEIGTIWIEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135
Query: 101 VVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYT 160
+ + A+ I ++++ +E F E +LLVNI H LVP+H +L+ EE+ LL RY
Sbjct: 136 IAPVAPSGPAQKIIPAVASETRIETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYR 195
Query: 161 VKETQV 166
+K+TQ+
Sbjct: 196 LKDTQL 201
>gi|156061727|ref|XP_001596786.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980]
gi|154700410|gb|EDO00149.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 242
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 24/187 (12%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-------------MKR 51
D E +L+R RTV +M++DRGY + + E+NMS + F AKF N
Sbjct: 16 DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKAKFTSNDGSVDRRQMNFSATPS 75
Query: 52 EDLVINKALR------NDSSDQIYVFFPD-----EQKVGVKTMKTYTNRMKSENVFRAIL 100
E ++ A N ++ +I + + + +G+K M+T+ + N IL
Sbjct: 76 EAMIAKYANAPTPQNPNPTTSEIGTIWVEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135
Query: 101 VVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYT 160
+ + A+ I +++ +E F E +LLVNI H LVP+H +L+ EE+ LL RY
Sbjct: 136 IAPVPPSGPAQKIIPAVASDTRIETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYR 195
Query: 161 VKETQVS 167
+K+TQ+
Sbjct: 196 LKDTQLP 202
>gi|119495104|ref|XP_001264345.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
gi|119412507|gb|EAW22448.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
Length = 234
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINK-ALRN 62
+D E+ RL+R RTV +ML DRGY V + EI + ++F K+ + + D K + R
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKISARP 70
Query: 63 DSSDQ--------------------IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
++ Q IYV F D VG K ++ + + + N + +
Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFI 130
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I + E FQE +LLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189
Query: 162 KETQVS 167
KE+Q+
Sbjct: 190 KESQLP 195
>gi|154411936|ref|XP_001579002.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121913204|gb|EAY18016.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 202
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 6/166 (3%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+S E+ FRI T+ QM+RDRGY V + +S ++F + N +N+ N
Sbjct: 1 MSSEKESMYFRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPHN----LNECYSN 56
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQN-LTPFARTCIQEI-SAK 120
++I FF +++ KT++T M V RAI++ + LTP A + + S+
Sbjct: 57 MEGERILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSG 116
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E F E+++NI EH LVP+H+VLT +EK+ +LKRY V ETQ+
Sbjct: 117 KTIEFFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQL 162
>gi|242778512|ref|XP_002479254.1| RNA polymerase subunit [Talaromyces stipitatus ATCC 10500]
gi|218722873|gb|EED22291.1| RNA polymerase subunit [Talaromyces stipitatus ATCC 10500]
Length = 236
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 26/184 (14%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG------------------EN 48
E+ RL+R RTV +MLRDRGY + + E+ + + F KFG E
Sbjct: 15 EMARLWRTWRTVHEMLRDRGYEMSEEEVKIDYQDFANKFGGEHGYPSRAKMTIAAMPSEA 74
Query: 49 MKREDLVINKALRNDSS----DQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
MK + + K + + IYV F D VG K ++ + + + N I + +
Sbjct: 75 MKAKYTPLKKRVSDPDPVPDCGPIYVQFCEDTTGVGAKQVRAFNHLVDEGNYHSGIFITR 134
Query: 104 QNLTPFARTCIQEISAKFHL-EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
++P A + SA H+ E FQE++LLVNI H LVP+H +L+ EEK LL+RY +K
Sbjct: 135 TAISPSAMRLLS--SAVGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYRLK 192
Query: 163 ETQV 166
E+Q+
Sbjct: 193 ESQL 196
>gi|67516941|ref|XP_658356.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|40746238|gb|EAA65394.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|259488970|tpe|CBF88854.1| TPA: RNA polymerase subunit (AFU_orthologue; AFUA_1G14110)
[Aspergillus nidulans FGSC A4]
Length = 235
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF-GEN--MKREDLVI---- 56
++ E R++R RTV +ML+DRGY V + E+ + ++F K+ GE RE L I
Sbjct: 12 AERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKIQARP 71
Query: 57 ------------NKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ R+ D IY+ F PD+ +G K ++T+ + + N I +
Sbjct: 72 TEAMKAKYTPLPTPSNRDPQPDCGTIYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTGIFI 131
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
+ ++P A + I + E FQE +LLVNI H LVP+H +L+ EEK LL+RY +
Sbjct: 132 TKTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRYRL 190
Query: 162 KETQVS 167
KE+Q+
Sbjct: 191 KESQLP 196
>gi|359487223|ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 221
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 2/159 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT+ QML DRGY V E+ S F A FG N L I L + S
Sbjct: 24 ESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLRICLPLISSPSK 83
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+I V F ++ ++ ++ E + R ILV+Q + AR + E K +E F
Sbjct: 84 KILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFF 141
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQ 165
Q ELL+NI +HV VP+H++L+ +EK+ L+ +Y +++ Q
Sbjct: 142 QITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQ 180
>gi|357509489|ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|124359979|gb|ABN07995.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 248
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 92/161 (57%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRTV++ML+DRGY + EI +S + F G++ + L + + S
Sbjct: 50 ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSK 109
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRM-KSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V ++ ++ E++ IL+VQ +T A + +S F +E+
Sbjct: 110 RILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLS--FKVEI 167
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
FQ +LLVN +HVL P+HQVLT+++KK LLK+Y ++E Q+
Sbjct: 168 FQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQL 208
>gi|171688464|ref|XP_001909172.1| hypothetical protein [Podospora anserina S mat+]
gi|170944194|emb|CAP70304.1| unnamed protein product [Podospora anserina S mat+]
Length = 235
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 22/186 (11%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF--GENMKREDLVINKAL 60
+ D+E+ RL+R RT+ +M+ DRGY + + EI M ++F KF G+ ++ A
Sbjct: 10 IHDKEVSRLWRAWRTIHEMVADRGYELAEEEIKMPLDEFKRKFTNGDGSPNRSIMSFSAR 69
Query: 61 RNDS-------------------SDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAIL 100
+ S I+V F P++ +G+ MK + + + IL
Sbjct: 70 PSASMIKKFTPPPTASNPDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCANNSYKAGIL 129
Query: 101 VVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYT 160
V L+ AR + S +E F E +LLVNI H LVP H +L+ EEK LLKRY
Sbjct: 130 VTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKRYR 189
Query: 161 VKETQV 166
+KETQ+
Sbjct: 190 LKETQL 195
>gi|367022836|ref|XP_003660703.1| hypothetical protein MYCTH_2314258 [Myceliophthora thermophila ATCC
42464]
gi|347007970|gb|AEO55458.1| hypothetical protein MYCTH_2314258 [Myceliophthora thermophila ATCC
42464]
Length = 234
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 32/187 (17%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS- 65
E+ RL+R RTV +M++DRGY + + E+ +S ++F A++ ED N+A S+
Sbjct: 13 EVTRLWRAWRTVHEMVQDRGYELAEDEVKISLDRFRAEY----TNEDGSPNRAKMQFSAR 68
Query: 66 ------------------------DQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAIL 100
I+V F P++ +G+ MK + + N IL
Sbjct: 69 PSEAMIKKFTPPPTPSNPDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCSANNFKAGIL 128
Query: 101 VVQQNLTPFARTCIQEISAKFHL-EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRY 159
V L+ AR + ++++F L E F E +LLVNI H LVP+H +L+ EEK LLKRY
Sbjct: 129 VTAVALSAQARK-VMTVTSQFTLIECFLEEDLLVNITHHELVPKHVLLSREEKAALLKRY 187
Query: 160 TVKETQV 166
+KETQ+
Sbjct: 188 RLKETQL 194
>gi|296822412|ref|XP_002850281.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
gi|238837835|gb|EEQ27497.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
Length = 236
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 23/185 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV ++L DRGY V + E+ +S +F ++ + + D
Sbjct: 13 ADREMARLWRTWRTVFELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPDRNKMRISARP 72
Query: 54 -----------LVINKALRNDSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILV 101
+K I+V F E Q VG K ++ + + +N I +
Sbjct: 73 SQAMMEKYTPLPTTSKPNTAPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I +F E F E ELLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 133 TQSPISPSAIRLLTAIPGRF-CEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRL 191
Query: 162 KETQV 166
KE+Q+
Sbjct: 192 KESQL 196
>gi|345562747|gb|EGX45783.1| hypothetical protein AOL_s00140g99 [Arthrobotrys oligospora ATCC
24927]
Length = 225
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRE-------------- 52
E+ RL+R RT +M+ DRGY + + E+N+S + F K+ ++ R
Sbjct: 8 EVSRLYRAWRTAHEMIADRGYDLTEEELNISLDDFKVKYCDSDGRPQRKKMTFSAKPSQS 67
Query: 53 ------DLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNL 106
D + + N S I++ F E +G+K M+ + + + N + + L
Sbjct: 68 MIDRNTDTQTGQLIPN-SCGTIWIEFSPEPSIGIKQMRVFAHTIVEHNFHTGVFITMAPL 126
Query: 107 TPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
T A I ++ +E F E +LLVNI H LVP+H +++ E+K+ LL+RY +KETQ+
Sbjct: 127 TSSAAKIIPTVAPSV-IECFLEQDLLVNITRHELVPQHVLMSREDKRKLLERYRLKETQL 185
>gi|378756615|gb|EHY66639.1| hypothetical protein NERG_00279 [Nematocida sp. 1 ERTm2]
Length = 208
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 17/171 (9%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
EEI++L+ ++T+ QM++ RGY V + ++ M F + +IN ++ S
Sbjct: 5 EEIRKLWLCQKTIFQMMKCRGYTVSEVDMEMDLNAFKTSYPA-------LINTGSKHSLS 57
Query: 66 ----------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
Q++VFFPD K +K YT+ + +N+ I+V ++ L + +
Sbjct: 58 MLFQHTSMPEKQLFVFFPDNAYFKAKDIKLYTSTLGKQNIHNGIIVCKETLKAHSLKALD 117
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
E + LE+F ELL NI +H VP+H +LT+EEKK++LK V + Q+
Sbjct: 118 ESRKDYDLELFYIKELLFNITKHKDVPKHVLLTDEEKKSVLKERKVGDAQL 168
>gi|388510192|gb|AFK43162.1| unknown [Medicago truncatula]
Length = 248
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRTV++ML+DRGY + EI +S + F G++ + L + + S
Sbjct: 50 ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSK 109
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRM-KSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V ++ ++ E++ IL+VQ +T A + +S F +E+
Sbjct: 110 RILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLS--FKVEI 167
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
Q +LLVN +HVL P+HQVLT+++KK LLK+Y ++E Q+
Sbjct: 168 LQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQL 208
>gi|358384639|gb|EHK22236.1| hypothetical protein TRIVIDRAFT_84202 [Trichoderma virens Gv29-8]
Length = 233
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 21/183 (11%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVG------------------DFEINMSKEQFIAKFGE 47
+E+ RL+R RTV +M+ DR Y + D +N +K QF A+ +
Sbjct: 12 KEVVRLWRAWRTVHEMVADREYELAEDEVTISLDRFRDEYCHPDGTVNRAKLQFSARPSD 71
Query: 48 NMKREDLVINKALRNDS---SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
+M R++ A D I+V F +++ GV ++ + S N I+V
Sbjct: 72 SMLRKNTPPATASNPDPVPDCGPIWVEFLTDKQFGVGQIRQFAKYTISNNYKTGIMVTHV 131
Query: 105 NLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKET 164
L+P AR + + +E F E +LLVNI H LVP H +L+ EEK LLKRY +KET
Sbjct: 132 PLSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKIALLKRYRLKET 191
Query: 165 QVS 167
Q+
Sbjct: 192 QLP 194
>gi|387594524|gb|EIJ89548.1| hypothetical protein NEQG_00318 [Nematocida parisii ERTm3]
gi|387596634|gb|EIJ94255.1| hypothetical protein NEPG_00922 [Nematocida parisii ERTm1]
Length = 208
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 17/171 (9%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
EEI++L+ ++T+ QM++ RGY V + ++ M + F + +IN ++ S
Sbjct: 5 EEIRKLWLCQKTIFQMMKCRGYTVSEADLEMDLDLFKTSYPA-------LINTGSKHSLS 57
Query: 66 ----------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
Q++VFFPD K +K YT+ + +N+ I+V ++ L + +
Sbjct: 58 MLFQHTTMPEKQLFVFFPDNAYFKAKDIKLYTSTLGKQNIHNGIIVCKETLKAHSLKALD 117
Query: 116 EISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
E ++ LE+F ELL NI +H VP+H +LT EEKK +LK V E Q+
Sbjct: 118 ESRKEYDLELFYIRELLFNITKHKDVPKHILLTEEEKKNVLKERKVGEAQL 168
>gi|389628590|ref|XP_003711948.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|351644280|gb|EHA52141.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
Length = 230
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 93/181 (51%), Gaps = 24/181 (13%)
Query: 9 KRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE---NMKREDLVINKALRNDS- 64
++L+R RT+ QML DRGY + + E N+S E+F+A F + N+ + L + A +D+
Sbjct: 11 RKLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFS-ARPSDAM 69
Query: 65 ------------------SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNL 106
I+V F +E+K+GV K + + ILV Q L
Sbjct: 70 LKLHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGAL 129
Query: 107 TPFARTCIQEI-SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQ 165
+ AR + S +E F +LLVNI H LVP+H +L+ EKK LL+RY +KETQ
Sbjct: 130 SSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRLKETQ 189
Query: 166 V 166
+
Sbjct: 190 L 190
>gi|85105978|ref|XP_962076.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
crassa OR74A]
gi|28923670|gb|EAA32840.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
crassa OR74A]
Length = 234
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 32/192 (16%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR 61
T + +E+ RL+R RTV +M++DRGY + + E+ +S E+F A++ ED N+A
Sbjct: 8 TSASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKAEY----TNEDGTPNRAKL 63
Query: 62 NDSS-------------------------DQIYVFFPDEQ-KVGVKTMKTYTNRMKSENV 95
S+ I+V F E+ +GV MK + S+N
Sbjct: 64 QFSARPSEAMIKKFTAPPTPSNPNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHC-SDNK 122
Query: 96 FRA-ILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKT 154
F+A I + L+ AR + S +E F E +LLVNI H LVP+H +L+ EEK
Sbjct: 123 FKAGIFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAA 182
Query: 155 LLKRYTVKETQV 166
LLKRY +KETQ+
Sbjct: 183 LLKRYRLKETQL 194
>gi|440470981|gb|ELQ40020.1| DNA-directed RNA polymerases I [Magnaporthe oryzae Y34]
gi|440484880|gb|ELQ64891.1| DNA-directed RNA polymerases I [Magnaporthe oryzae P131]
Length = 259
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 93/181 (51%), Gaps = 24/181 (13%)
Query: 9 KRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE---NMKREDLVINKALRNDS- 64
++L+R RT+ QML DRGY + + E N+S E+F+A F + N+ + L + A +D+
Sbjct: 11 RKLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFS-ARPSDAM 69
Query: 65 ------------------SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNL 106
I+V F +E+K+GV K + + ILV Q L
Sbjct: 70 LKLHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGAL 129
Query: 107 TPFARTCIQEI-SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQ 165
+ AR + S +E F +LLVNI H LVP+H +L+ EKK LL+RY +KETQ
Sbjct: 130 SSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRLKETQ 189
Query: 166 V 166
+
Sbjct: 190 L 190
>gi|212533613|ref|XP_002146963.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
gi|210072327|gb|EEA26416.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
Length = 236
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 26/184 (14%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---MKREDLVINK----- 58
E+ RL+R RTV +MLRDRGY + + E+ + + F KF ++ RE + I
Sbjct: 15 EMARLWRTWRTVHEMLRDRGYEISEEELKIDLQDFTNKFSDSNGFPSRERMTIAAIPSEA 74
Query: 59 ------ALRNDSSD--------QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
L+ +D QI+V F D VG K ++ + + + N I + +
Sbjct: 75 MKAKYTPLKKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIFITR 134
Query: 104 QNLTPFARTCIQEISAKFHL-EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
++P A + SA H+ E FQE++LLVNI H LVP+H +L+ EEK LL+RY +K
Sbjct: 135 TAISPSAVRLLN--SAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYRLK 192
Query: 163 ETQV 166
E+Q+
Sbjct: 193 ESQL 196
>gi|336471719|gb|EGO59880.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
tetrasperma FGSC 2508]
gi|350292835|gb|EGZ74030.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
tetrasperma FGSC 2509]
Length = 234
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 32/192 (16%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR 61
T + +E+ RL+R RTV +M++DRGY + + E+ +S E+F A++ ED N+A
Sbjct: 8 TSASKEVSRLWRAWRTVHEMVQDRGYELSEDEVKISLERFKAEY----TNEDGTPNRAKL 63
Query: 62 NDSS-------------------------DQIYVFFPDEQ-KVGVKTMKTYTNRMKSENV 95
S+ I+V F E+ +GV MK + S+N
Sbjct: 64 QFSARPSEAMIKKFTAPPTPSNPNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHC-SDNK 122
Query: 96 FRA-ILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKT 154
F+A I + L+ AR + S +E F E +LLVNI H LVP+H +L+ EEK
Sbjct: 123 FKAGIFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAA 182
Query: 155 LLKRYTVKETQV 166
LLKRY +KETQ+
Sbjct: 183 LLKRYRLKETQL 194
>gi|195606570|gb|ACG25115.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 154
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT ++ML DRGY V + E+ + +F A + E L L +D S
Sbjct: 9 ESHRLFLARRTALEMLXDRGYAVPEEELARTLPEFRAWXEYXPELERLAFXTTLTSDPSS 68
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ V F V + ++ +K EN+ R IL++Q + R I+EI +F ++ F
Sbjct: 69 KVKVVFCPPGPVKIAAIRLIYTEVKDENLARLILILQGKIMSPTRESIKEI-FRFKVDTF 127
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEK 152
Q ELLVNI +HVL P+H+VLT E K
Sbjct: 128 QITELLVNITKHVLKPKHEVLTAEGK 153
>gi|398396120|ref|XP_003851518.1| hypothetical protein MYCGRDRAFT_43980, partial [Zymoseptoria
tritici IPO323]
gi|339471398|gb|EGP86494.1| hypothetical protein MYCGRDRAFT_43980 [Zymoseptoria tritici IPO323]
Length = 218
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 22/179 (12%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-----------MKREDLVI-- 56
RL+R+ RT QM DRGY + + E N+S E+F + + + R +
Sbjct: 2 RLWRVLRTTKQMCADRGYELTEAECNISLEEFRSLYADESGVPQRTKMAFTARPSAAMIK 61
Query: 57 --------NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTP 108
N+ + I+V F +E +G+K +K + + +N + I V Q T
Sbjct: 62 KYTPFTRPNQPEKEAEIGNIHVEFSNESNIGIKHIKNFAQLLSEKNYYTGIFVTQVAPTS 121
Query: 109 FARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
A I + +E+F+E +LLVNI +H LVP+H +L+ EEK+ LL+RY +KETQ+
Sbjct: 122 AALKIIPSVLPTV-MEIFREEDLLVNISKHDLVPKHILLSQEEKRGLLERYRLKETQLP 179
>gi|326480400|gb|EGE04410.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 276
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--------------- 48
+D E+ RL+R RTV ++L DRGY V + E+ +S F ++ +
Sbjct: 13 ADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARP 72
Query: 49 ----MKREDLVINKALRN--DSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILV 101
M+R + + N I+V F E Q VG K ++ + + +N I +
Sbjct: 73 SQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I +F E F E ELLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 133 TQSPISPSAIRLLTAIPGRF-CEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRL 191
Query: 162 KETQV 166
KE+Q+
Sbjct: 192 KESQL 196
>gi|296424747|ref|XP_002841908.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638159|emb|CAZ86099.1| unnamed protein product [Tuber melanosporum]
Length = 220
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 23/183 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL--- 60
+ E RL+R RTV +M +DRGY + + EI ++ E+F ++ + R I K L
Sbjct: 3 PERESSRLWRAWRTVHEMAKDRGYEISEEEITITLEEFRHQYCDGEGRP---IRKNLTFK 59
Query: 61 RNDSSDQI----------------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
N S I +V F E +G+K M+ + + + SEN I +
Sbjct: 60 ANPSPSMIKQHAPAPNQPATVGTLWVEFSAESNIGIKHMRAFAHTINSENFHTGIFICSS 119
Query: 105 NLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKET 164
+ TP A + + +EVF E++LLVNI +H LVP H +L+ EEKK LL+RY +KE+
Sbjct: 120 HPTPAAMKIVPTVLPSV-IEVFLESDLLVNITKHELVPRHILLSREEKKKLLERYRLKES 178
Query: 165 QVS 167
Q+
Sbjct: 179 QLP 181
>gi|358393858|gb|EHK43259.1| hypothetical protein TRIATDRAFT_301149 [Trichoderma atroviride IMI
206040]
Length = 233
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 21/183 (11%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVG------------------DFEINMSKEQFIAKFGE 47
+E+ RL+R RTV +M+ DR Y + D +N +K QF A+ +
Sbjct: 12 KEVVRLWRAWRTVHEMVADREYELAEDEVSISLERFRDEYCHPDGSVNRAKLQFSARPSD 71
Query: 48 NMKREDLVINKALRNDS---SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
+M R++ A D I+V F +++ GV ++ + + N I+V
Sbjct: 72 SMLRKNTPPATASNPDPVPDCGPIWVEFLTDKQFGVSQIRNFAKYTITNNYKTGIMVTPV 131
Query: 105 NLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKET 164
L+P AR + + +E F E +LLVNI H LVP H +L+ EEK LLKRY +KET
Sbjct: 132 ALSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKIALLKRYRLKET 191
Query: 165 QVS 167
Q+
Sbjct: 192 QLP 194
>gi|402467370|gb|EJW02677.1| hypothetical protein EDEG_02909 [Edhazardia aedis USNM 41457]
Length = 200
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Query: 14 IRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFP 73
R TV++ML+DRGY ++S ++F+ ++ ++ + L + +++Q+ F
Sbjct: 11 CRETVIEMLQDRGYISNRTTKSLSLQEFMHEYSNALQDRSTIKMLVLHSKTNEQLVCHFF 70
Query: 74 DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLV 133
DE KVG+K +K + S+ + +LV ++ L+P + E ++EVF+E ELL
Sbjct: 71 DEAKVGLKALKLTIEGILSQKIENVVLVCKEGLSPAGAKFVAEFK---NVEVFKEKELLF 127
Query: 134 NIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
N+ +H+LVP+H++L EEK LL+ +KE+Q+
Sbjct: 128 NVTKHMLVPKHRILEYEEKCKLLECRRIKESQL 160
>gi|302503318|ref|XP_003013619.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|302665750|ref|XP_003024482.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|327294261|ref|XP_003231826.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
gi|291177184|gb|EFE32979.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|291188539|gb|EFE43871.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|326465771|gb|EGD91224.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
Length = 236
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--------------- 48
+D E+ RL+R RTV ++L DRGY V + E+ +S F ++ +
Sbjct: 13 ADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARP 72
Query: 49 ----MKREDLVINKALRN--DSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILV 101
M+R + + N I+V F E Q VG K ++ + + +N I +
Sbjct: 73 SQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I +F E F E ELLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 133 TQSPISPSAIRLLTAIPGRF-CEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRL 191
Query: 162 KETQV 166
KE+Q+
Sbjct: 192 KESQL 196
>gi|351723899|ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT ++ML+DRGY + EI++S F G+ + L ++ +SS
Sbjct: 39 ESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLRLSLTHATNSSK 98
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V ++ ++ + + IL+V+ ++T A + S F +E+
Sbjct: 99 RILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFS--FKVEI 156
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
FQ +LLVNI +HVL P+HQVLT+++K LLK+Y ++E Q+
Sbjct: 157 FQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQL 197
>gi|326475256|gb|EGD99265.1| DNA-directed RNA polymerase II [Trichophyton tonsurans CBS 112818]
Length = 228
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--------------- 48
+D E+ RL+R RTV ++L DRGY V + E+ +S F ++ +
Sbjct: 13 ADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARP 72
Query: 49 ----MKREDLVINKALRN--DSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILV 101
M+R + + N I+V F E Q VG K ++ + + +N I +
Sbjct: 73 SQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I +F E F E ELLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 133 TQSPISPSAIRLLTAIPGRF-CEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRL 191
Query: 162 KETQVS 167
KE+Q+
Sbjct: 192 KESQLP 197
>gi|302894285|ref|XP_003046023.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726950|gb|EEU40310.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 234
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 21/183 (11%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVG------------------DFEINMSKEQFIAKFGE 47
+E+ RL+R RTV +M+ DR Y + D IN +K QF A+ E
Sbjct: 13 KEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSINRAKLQFSARPSE 72
Query: 48 NMKREDLVINKALRNDS---SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
+M R+ A + D I+V F ++ GV ++ + + + + I+V
Sbjct: 73 SMLRKFTPPATADKPDPVPDCGPIWVEFLADKTFGVSQIRQFATYVITNHYKTGIMVTHV 132
Query: 105 NLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKET 164
L+P AR + + + +E F E +LLVNI H LVP+H +L+ +EK LLKRY +KET
Sbjct: 133 PLSPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKRYRLKET 192
Query: 165 QVS 167
Q+
Sbjct: 193 QLP 195
>gi|326430754|gb|EGD76324.1| hypothetical protein PTSG_01026 [Salpingoeca sp. ATCC 50818]
Length = 207
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 20 QMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ--IYVFFPDEQK 77
QM DRGY V + M +++ G+ ++RE ++ +R DS D + V+FP E
Sbjct: 18 QMCHDRGYLVTQDMMEMPYDRWEEMHGDKIRRE---LSYYVRKDSGDPTGLLVYFPVEPD 74
Query: 78 VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI-SAKFHLEVFQEAELLVNIK 136
V +K+ R+ EN R I+V + L AR ++ + + F EVF EAEL +N+
Sbjct: 75 VSTVLIKSLHERITKENSKRVIIVYRGKLAGAARKAMEVLKDSGFVFEVFTEAELAINVT 134
Query: 137 EHVLVPEHQVLTNEEKKTLLKRYTV 161
H LVP+H VLT EK+ LL RY++
Sbjct: 135 RHRLVPKHDVLTEAEKQQLLDRYSI 159
>gi|315056263|ref|XP_003177506.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
gi|311339352|gb|EFQ98554.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
Length = 236
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 23/186 (12%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--------------- 48
+D E+ RL+R RTV ++L DRGY V + E+ +S F ++ +
Sbjct: 13 ADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLGDFKQRYSDALGFPDRNKMRISARP 72
Query: 49 ----MKREDLVINKALRN--DSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILV 101
M+R + + N I+V F E Q VG K ++ + + +N I +
Sbjct: 73 SQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
Q ++P A + I +F E F E ELLVNI H LVP+H +L+ EEKK LL+RY +
Sbjct: 133 TQSPISPSAIRLLTAIPGRF-CEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRL 191
Query: 162 KETQVS 167
KE+Q+
Sbjct: 192 KESQLP 197
>gi|336267790|ref|XP_003348660.1| hypothetical protein SMAC_01684 [Sordaria macrospora k-hell]
gi|380093918|emb|CCC08134.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 234
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 97/188 (51%), Gaps = 24/188 (12%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKE------------------QFIA 43
T + +E+ RL+R RTV +M++DRGY + + E+ +S E QF A
Sbjct: 8 TSASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKLEYTNEDGTPNRGKLQFSA 67
Query: 44 KFGENMKREDLVINKALRNDSSDQ---IYVFFPDEQ-KVGVKTMKTYTNRMKSENVFRA- 98
+ E M ++ + + + I+V F E+ +GV MK + S+N F+A
Sbjct: 68 RPSEAMIKKFTAPPTPSNPNPAPECGTIWVEFCTEKGSIGVSVMKKFVTHC-SDNKFKAG 126
Query: 99 ILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
I + L+ AR + S +E F E +LLVNI H LVP+H +L+ EEK LLKR
Sbjct: 127 IFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKR 186
Query: 159 YTVKETQV 166
Y +KETQ+
Sbjct: 187 YRLKETQL 194
>gi|340521475|gb|EGR51709.1| predicted protein [Trichoderma reesei QM6a]
Length = 237
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 25/187 (13%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMS----------------------KEQFIA 43
+E+ RL+R RTV +M+ DR Y + + E+N+S K QF A
Sbjct: 12 KEVVRLWRAWRTVHEMVADREYELAEDEVNISLDRFRDEYCHPDGTLTQKNSRAKLQFSA 71
Query: 44 KFGENMKREDLVINKALRNDS---SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAIL 100
+ ++M R++ D I+V F +++ GV ++ + S N I+
Sbjct: 72 RPSDSMLRKNTPPATPSNPDPVPDCGPIWVEFLTDKQFGVGQIRQFAKYTISNNYKTGIM 131
Query: 101 VVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYT 160
V L+P AR + + +E F E +LLVNI H LVP H +L+ EEK LLKRY
Sbjct: 132 VTHVPLSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKIALLKRYR 191
Query: 161 VKETQVS 167
+KETQ+
Sbjct: 192 LKETQLP 198
>gi|169600143|ref|XP_001793494.1| hypothetical protein SNOG_02900 [Phaeosphaeria nodorum SN15]
gi|160705387|gb|EAT89631.2| hypothetical protein SNOG_02900 [Phaeosphaeria nodorum SN15]
Length = 277
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 34/188 (18%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS---- 65
R++R+ RT +M+ +RGY V D E+ MS E F K+ RED +++ N SS
Sbjct: 55 RMWRVWRTAKEMMYERGYNVLDEEMTMSLEAFADKYA----REDGEPDRSRLNFSSTPSE 110
Query: 66 ---------------------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
I+ F ++ VG+K ++ + N + S + + I+V +
Sbjct: 111 EMLIKYTPMPTKKEPNPVPAIGTIWCEFNADEAVGLKQLRDFMNHLGSGSFYSGIMVTVK 170
Query: 105 NLTPFARTCIQEIS-----AKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRY 159
+T A ++ S K +EVF E +LLVNI +H LVP+H +L+ EEK LL RY
Sbjct: 171 PITGMAIRLLRGASNLSDGPKGGIEVFVEQDLLVNITKHELVPKHVLLSAEEKAQLLTRY 230
Query: 160 TVKETQVS 167
+KETQ+
Sbjct: 231 RLKETQLP 238
>gi|224053296|ref|XP_002297750.1| predicted protein [Populus trichocarpa]
gi|222845008|gb|EEE82555.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRTV++ML+DRGY V D E+N S +F + FG + + L + +LR+
Sbjct: 35 ESYRYYISRRTVLEMLKDRGYDVLDSELNRSLTEFRSVFGNSPDLDSLRFSVSLRSIPHK 94
Query: 67 QIYVFFPDEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+ V F ++ ++T Y + E++ IL++Q + FA+ +++ F +EV
Sbjct: 95 KTLVMFLGTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKFP--FKVEV 152
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
FQ +LLVNI +HVL P+ +LT E+K+ ++ +Y +++ Q+
Sbjct: 153 FQITDLLVNITKHVLQPQMDILTAEQKQQVMNKYKLEDKQL 193
>gi|408398400|gb|EKJ77531.1| hypothetical protein FPSE_02281 [Fusarium pseudograminearum CS3096]
Length = 234
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 21/183 (11%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVG------------------DFEINMSKEQFIAKFGE 47
+E+ RL+R RTV +M+ DR Y + D IN +K F A+
Sbjct: 13 KEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSINRNKLSFSARPST 72
Query: 48 NMKREDLVINKALRNDS---SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
M R+ A D I++ F ++ GV ++ + + + S N I++
Sbjct: 73 AMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVNQIRAFASYVISNNYKTGIMITHV 132
Query: 105 NLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKET 164
L+P AR + + + +E F E +LLVNI H LVP+H +L+ EEK LLKRY +KET
Sbjct: 133 PLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKRYRLKET 192
Query: 165 QVS 167
Q+
Sbjct: 193 QLP 195
>gi|440494631|gb|ELQ76996.1| RNA polymerase, 25-kDa subunit (common to polymerases I, II and
III) [Trachipleistophora hominis]
Length = 197
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 97/163 (59%), Gaps = 13/163 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
++ + +R+TV++ML DRGY V ++++N + F+ K+ +K D + + +
Sbjct: 4 VRNQYLVRKTVLEMLSDRGYSVKEYQVN-DYDDFVNKYPNCVK--DTTNLRIIVQKDKEM 60
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTP----FARTCIQEISAKFHL 123
++VFF DE+K+ +K++K M+ +N+ ILV+++ ++P FA C I+
Sbjct: 61 LFVFFSDEEKMSLKSVKILVENMEKQNIKNLILVLREGISPAANKFALECPMNIT----- 115
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+F+E ELL N+ +H LV +H++++ EEK+ L+ +KE Q+
Sbjct: 116 -IFKEKELLFNVTKHSLVFKHRIISVEEKERLMDEKKIKEEQM 157
>gi|15228284|ref|NP_188290.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332642330|gb|AEE75851.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 87
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 4/79 (5%)
Query: 83 MKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK---FHLEVFQEAELLVNIKEHV 139
MK Y +++KS NVFRAILVVQ ++ F+R + + A FH+EVFQE EL+VN+KEHV
Sbjct: 1 MKKYIDQLKSANVFRAILVVQ-DIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHV 59
Query: 140 LVPEHQVLTNEEKKTLLKR 158
VPEHQ LT EEK+ L+R
Sbjct: 60 FVPEHQALTTEEKQKFLER 78
>gi|300175741|emb|CBK21284.2| unnamed protein product [Blastocystis hominis]
Length = 206
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 2/151 (1%)
Query: 12 FRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDL-VINKALRNDSSDQIYV 70
F R+ ++M+ RGY + + + F+++FG E L VI K L N +D +
Sbjct: 12 FIARKNAIKMMTKRGYVLRMTDDMTKYDAFLSRFGNEPDYESLSVIGKRLSN-KNDGCLL 70
Query: 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAE 130
F D +G ++ +++ EN+ AI+VV+ + A+ ++ FHL++F+E+
Sbjct: 71 IFNDSPSLGAPAIREIIEQLEKENISSAIIVVKNRIPSTAKHACKKFEPIFHLDLFKESS 130
Query: 131 LLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
LLV+I EH LVP H L+ +E K LL+R ++
Sbjct: 131 LLVDITEHFLVPPHIALSEQETKELLERLSI 161
>gi|322706717|gb|EFY98297.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Metarhizium
anisopliae ARSEF 23]
Length = 232
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 21/183 (11%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMS------------------KEQFIAKFGE 47
+E+ RL+R RTV +M+ DR Y + + E+N+S K QF A+ +
Sbjct: 11 KEVVRLWRAWRTVHEMVADREYELAEEEVNISLDRFRDEYCNPDGSVNRSKLQFSARPSD 70
Query: 48 NMKREDLVINKALRNDS---SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
M +++ D ++V F +++ GV ++ + S N I+V
Sbjct: 71 AMLKKNTPPATESNPDPVPDCGPVWVEFLTDKQFGVGQIRQFAKYTISNNYKTGIMVTHV 130
Query: 105 NLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKET 164
L+P AR + + +E F E +LLVNI H LVP H +L+ +EK LLKRY +KET
Sbjct: 131 PLSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSRDEKSALLKRYRLKET 190
Query: 165 QVS 167
Q+
Sbjct: 191 QLP 193
>gi|380474201|emb|CCF45905.1| RNA polymerase Rpb5, partial [Colletotrichum higginsianum]
Length = 219
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 21/183 (11%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGY------------------FVGDFEINMSKEQFIAKFG 46
++E+ RL+R RT +M DRGY D +N K QF A
Sbjct: 8 NKEVTRLWRAWRTAHEMAADRGYELAEDELKISLDRFKMEYTAADGSVNRGKLQFSANPS 67
Query: 47 ENMKREDLVINKALR-NDSSD--QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
+M R+ + N + D ++V F + G+K +K + + + S I+V
Sbjct: 68 ADMIRKYTPPPTSQNPNPTPDCGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSGIMVTH 127
Query: 104 QNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
L+P AR + + +E F E +LLVNI +H LVP+H +L+ EEK LLKRY +KE
Sbjct: 128 VPLSPAARKMLITXESFXKVECFLEEDLLVNITQHELVPKHILLSREEKVALLKRYRLKE 187
Query: 164 TQV 166
TQ+
Sbjct: 188 TQL 190
>gi|189192274|ref|XP_001932476.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187974082|gb|EDU41581.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 235
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 101/193 (52%), Gaps = 34/193 (17%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
+ + RL+R+ +T +M+ DRGY V + ++NMS +QF K+ RED +++ N S
Sbjct: 8 NPSLMRLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFARKYA----REDGEPDRSRLNFS 63
Query: 65 S-------------------------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAI 99
I+V F ++ VG+K ++ Y + + + I
Sbjct: 64 CQPSEEMLAKYTDAPTKKVPNPLPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGI 123
Query: 100 LVVQQNLTPFARTCIQEISA-----KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKT 154
++ + +T A ++ ++ K +EVF E +LLVNI +H LVP+H +L++EEK+
Sbjct: 124 MITVKPMTGMAIRLLRGATSLSDGPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQQ 183
Query: 155 LLKRYTVKETQVS 167
LL+RY +K+TQ+
Sbjct: 184 LLQRYRLKQTQLP 196
>gi|115492143|ref|XP_001210699.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114197559|gb|EAU39259.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 219
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 7/170 (4%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYF--VGDFEINMSKEQFIAKFGENMKREDLVINKALR 61
+D E+ RL+R RTV +ML+DR + + +K + A+ E M+ + + K +
Sbjct: 12 ADREMTRLWRTWRTVFEMLQDRPSPQRILLTLASRAKMKIQARPTEAMQVKYTPLTKQGQ 71
Query: 62 NDSS---DQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
+ + IYV F PD VG K ++ + + + N I + Q ++P A + +
Sbjct: 72 SPAPADCGTIYVEFCPDSSGVGTKQVRAFNHTVDEHNFHTGIFITQTPISPSAVRLLSGV 131
Query: 118 SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ E FQE +LLVNI H LVP+H +L+ EEKK LL RY +KE+Q+
Sbjct: 132 PGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRYRLKESQLP 180
>gi|330933135|ref|XP_003304060.1| hypothetical protein PTT_16482 [Pyrenophora teres f. teres 0-1]
gi|311319571|gb|EFQ87830.1| hypothetical protein PTT_16482 [Pyrenophora teres f. teres 0-1]
Length = 235
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 101/189 (53%), Gaps = 26/189 (13%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG------------------ 46
+ + RL+R+ +T +M+ DRGY V + ++NMS +QF K+
Sbjct: 8 NPSLMRLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFSRKYAREDGEPDRSRLNFSCQPS 67
Query: 47 -ENMKREDLVINKALRNDSSD--QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
E + + K + N + + I+V F ++ VG+K ++ Y + + + I++
Sbjct: 68 EEMLAKYTDAPTKKVPNPTPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMITV 127
Query: 104 QNLTPFARTCIQEISA-----KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
+ +T A ++ ++ K +EVF E +LLVNI +H LVP+H +L++EEK+ LL+R
Sbjct: 128 KPMTGMAIRLLRGATSLSDGPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQR 187
Query: 159 YTVKETQVS 167
Y +K+TQ+
Sbjct: 188 YRLKQTQLP 196
>gi|15232524|ref|NP_191013.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
gi|7258352|emb|CAB77569.1| RNA polymerase 24kDa subunit-like protein [Arabidopsis thaliana]
gi|332645717|gb|AEE79238.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
Length = 233
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E KR + R T +MLRDRGY V + E++++ +F + FGE + E L I LR+D
Sbjct: 35 ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F + + VK+++ ++ + A ILV+Q + FA+ + + F +E
Sbjct: 95 KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL--TTFPFTVET 152
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F +LLVNI +H+ P+ ++L EEK+ LL+++ +++ Q+
Sbjct: 153 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLP 194
>gi|300120101|emb|CBK19655.2| DNA-directed RNA polymerase II [Blastocystis hominis]
Length = 215
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLV---INKALRNDSSD 66
+LFR+R+TV +ML RGY + D + +M+ + F+ + + DL+ I D D
Sbjct: 11 KLFRVRKTVFKMLSKRGYAISDKDQSMTLDTFVKDYCDAETNPDLLKLTIISRKTEDEDD 70
Query: 67 QIYVFF--PDEQKVGVKTMKTYTNRMKSE-NVFRAILVVQQNLTP-FARTCIQEISAKFH 122
++ VFF ++K+ K ++ ++ SE NV R ILV LT +
Sbjct: 71 RVVVFFIRSVDKKINGKDFESKIEKVSSEENVKRIILVFGGELTSEAKKKANSASKKNLI 130
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E FQE EL+V+I EH LVPEHQ+L +EK LLK+Y ++E Q+
Sbjct: 131 VESFQEDELVVDITEHELVPEHQLLKPQEKADLLKQYGLEERQL 174
>gi|400596436|gb|EJP64210.1| RNA polymerase Rpb5 domain-containing protein [Beauveria bassiana
ARSEF 2860]
Length = 232
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 29/187 (15%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKA------ 59
+E+ RL+R +TV +M+ DR Y + EIN+S ++F ++F D +N+A
Sbjct: 11 KEVVRLWRAWKTVHEMVADRDYELAQDEINISLDRFRSEFCN----PDGTVNRAKLQFSA 66
Query: 60 ------LRNDS-------------SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAIL 100
LR + I+V F +++ GV ++ + + N I+
Sbjct: 67 RPSDAMLRKHTPPATDANPDPVPDCGPIWVEFLADKQFGVAQIRQFAKYTITNNYKTGIM 126
Query: 101 VVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYT 160
V L+P AR + + +E F E +LLVNI H LVP H +L+ EEK LL+RY
Sbjct: 127 VTHVALSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKVALLRRYR 186
Query: 161 VKETQVS 167
+KETQ+
Sbjct: 187 LKETQLP 193
>gi|310792261|gb|EFQ27788.1| RNA polymerase Rpb5 domain-containing protein [Glomerella
graminicola M1.001]
Length = 230
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 21/184 (11%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVG------------------DFEINMSKEQFIAKFG 46
++E+ RL+R RT +M DRGY + D +N +K QF A
Sbjct: 8 NKEVTRLWRAWRTAHEMAADRGYELAEDELTISLDRFKMEYTSADGSVNRNKLQFSANPS 67
Query: 47 ENMKREDLVINKALRNDSSDQ---IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
M R+ + + + ++V F + G+K +K + + + S I++
Sbjct: 68 AEMIRKFTPPATPQNPNPAPECGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSGIMITH 127
Query: 104 QNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKE 163
L+P AR + I + +E F E +LLVNI +H LVP+H +L+ EEK LLKRY +KE
Sbjct: 128 VALSPAARKMLITIESFAKVECFLEEDLLVNITKHELVPKHILLSREEKIALLKRYRLKE 187
Query: 164 TQVS 167
TQ+
Sbjct: 188 TQLP 191
>gi|46136465|ref|XP_389924.1| hypothetical protein FG09748.1 [Gibberella zeae PH-1]
Length = 253
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 25/186 (13%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFV--------------------GDFEINMSKEQ--FIA 43
+E+ RL+R RTV +M+ DR Y + G IN S+ + F A
Sbjct: 13 KEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSININYSRNKLSFSA 72
Query: 44 KFGENMKREDLVINKALRNDS---SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAIL 100
+ M R+ A D I++ F ++ GV ++ + + + S N I+
Sbjct: 73 RPSTAMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVSQIRAFASYVISNNYKTGIM 132
Query: 101 VVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYT 160
+ L+P AR + + + +E F E +LLVNI H LVP+H +L+ EEK LLKRY
Sbjct: 133 ITHVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKRYR 192
Query: 161 VKETQV 166
+KETQ+
Sbjct: 193 LKETQL 198
>gi|302423138|ref|XP_003009399.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|261352545|gb|EEY14973.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|346970556|gb|EGY14008.1| DNA-directed RNA polymerases I [Verticillium dahliae VdLs.17]
Length = 231
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 22/184 (11%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGY------------------FVGDFEINMSKEQFIAKFG 46
+E+ R +R RTV +M DRGY D +N SK F A+
Sbjct: 8 SKEVVRAWRAWRTVHEMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKLTFSARPS 67
Query: 47 ENM-KREDLVINKALRNDSSD--QIYVFFPDEQ-KVGVKTMKTYTNRMKSENVFRAILVV 102
+M R + A N D IY+ F EQ +GV+ ++ + + + I+V
Sbjct: 68 SDMLSRHTPAPSAANPNPDPDCGPIYIEFIAEQGSLGVQHLRRFVQHVLEGHFKAGIMVT 127
Query: 103 QQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
LT R + + + +E F E +LLVNI H LVP+H +L+ +EK LLKRY +K
Sbjct: 128 SSPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKRYRLK 187
Query: 163 ETQV 166
ETQ+
Sbjct: 188 ETQL 191
>gi|413952169|gb|AFW84818.1| hypothetical protein ZEAMMB73_052663 [Zea mays]
Length = 134
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 3 LSDEE-IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR 61
++DE + RL+RIRRTVMQMLRDRGY V D E+ S+ F+ KFGE+ REDL+INK +
Sbjct: 6 VTDEATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKK 65
Query: 62 NDSSDQI 68
ND SDQ+
Sbjct: 66 NDPSDQV 72
>gi|340386554|ref|XP_003391773.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like, partial [Amphimedon queenslandica]
Length = 124
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 55/74 (74%)
Query: 94 NVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKK 153
N+ RAI+VVQQ +TP A+ + +++ K+ LE F EAEL++NI EH LVPEH V+T EEK+
Sbjct: 14 NISRAIIVVQQGMTPSAKQALVDMAPKYILEQFMEAELMINITEHELVPEHIVMTTEEKR 73
Query: 154 TLLKRYTVKETQVS 167
LL RY +KE Q+
Sbjct: 74 ELLARYKLKEHQLP 87
>gi|356541565|ref|XP_003539245.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Glycine max]
Length = 214
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 92/159 (57%), Gaps = 4/159 (2%)
Query: 10 RLFRIRRTVMQMLRDRGY-FVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI 68
R F RRT+++ML+DRGY V ++ S +F ++FG+N + L + ++ S+ +
Sbjct: 18 RYFLSRRTLLEMLQDRGYDVVQHANLSPSLAEFRSRFGQNPNPQTLAFCVSHLSNPSNTV 77
Query: 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
V F + T+ ++ + + ILVVQ +T FA+ ++ S F +E+ +
Sbjct: 78 QVVFAGTDDIRKGTVNEICTQIADKGRLKGLILVVQSKMTSFAKKDLE--SLPFKVEIIR 135
Query: 128 EAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+LLVNI +HVL P++++LT++EKK LL ++ + E Q+
Sbjct: 136 IDDLLVNITKHVLQPKYEILTDDEKKALLTKHNLDEKQL 174
>gi|44890007|emb|CAF32125.1| DNA-directed RNA polymerase, putative [Aspergillus fumigatus]
Length = 220
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 13/174 (7%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRG------YFVGDFEINMSKEQFIAKFGENMKREDLVIN 57
+D E+ RL+R RTV +ML DR +F+ + + +K + A+ M+ + +
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRPRSTRLTHFLQPY--SRTKMKISARPTAAMQAKYTPLP 68
Query: 58 KALRNDS---SDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTC 113
D IYV F D VG K ++ + + + N + + Q ++P A
Sbjct: 69 TPANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRL 128
Query: 114 IQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ I + E FQE +LLVNI H LVP+H +L+ EEKK LL+RY +KE+Q+
Sbjct: 129 LSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLP 181
>gi|451853318|gb|EMD66612.1| hypothetical protein COCSADRAFT_35119 [Cochliobolus sativus ND90Pr]
Length = 234
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 98/187 (52%), Gaps = 34/187 (18%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN------- 62
RL+R+ RT +M+ DRGY V + ++ MS E+F ++ RED +++ N
Sbjct: 12 RLWRVWRTTKEMMNDRGYMVVEDDMTMSLEEFSRRYA----REDGEPDRSRLNFSCQPSE 67
Query: 63 ------------------DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
S I+V F ++ VG+K ++ Y + + + I+V +
Sbjct: 68 EMLAKYTDAPTKKNPNPTPSIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMVTVK 127
Query: 105 NLTPFARTCIQEISA-----KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRY 159
+T A ++ ++ K +EVF E +LLVNI +H LVP+H +L+++EK+ LL+RY
Sbjct: 128 AMTGMAIRLLRGATSITDGPKGGVEVFVEQDLLVNITKHELVPKHVLLSDQEKQQLLQRY 187
Query: 160 TVKETQV 166
+K+TQ+
Sbjct: 188 RLKQTQL 194
>gi|297816744|ref|XP_002876255.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322093|gb|EFH52514.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 223
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
Query: 9 KRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI 68
KR + R T +MLRDRGY V + E++++ +F + FGE E L I LR+D +I
Sbjct: 33 KRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPDLERLRICVPLRSDPKKKI 92
Query: 69 YVFFPDEQKVGVKTMKTYTNRMKSE-NVFRAILVVQQNLTPFARTCIQEISA-KFHLEVF 126
V F + + VK+++ +++ + V IL++Q + FA +E++ F +E
Sbjct: 93 LVVFMGTEPITVKSVRAIHSQISNNVGVNAMILILQSKMNHFAH---KELTTFPFTVETI 149
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQ 165
+LLVNI +H+ P+ ++L EEK+ LL+++ +++ Q
Sbjct: 150 PIGDLLVNIAKHIQQPKIEILNKEEKEQLLRKHALEDKQ 188
>gi|452004738|gb|EMD97194.1| hypothetical protein COCHEDRAFT_1163800 [Cochliobolus
heterostrophus C5]
Length = 234
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 34/188 (18%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS---- 65
RL+R+ RT +M+ DRGY V + ++ MS E+F ++ RED +++ N S
Sbjct: 12 RLWRVWRTTKEMMNDRGYMVVEDDMTMSLEEFSRRYA----REDGEPDRSRLNFSCQPSE 67
Query: 66 ---------------------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
I+V F ++ VG+K ++ Y + + + I+V +
Sbjct: 68 EMIAKYTDAPTKKNPNPTPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMVTVK 127
Query: 105 NLTPFARTCIQEISA-----KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRY 159
+T A ++ ++ K +EVF E +LLVNI +H LVP+H +L+++EK+ LL+RY
Sbjct: 128 AMTGMAIRLLRGATSITDGPKGGVEVFVEQDLLVNITKHELVPKHVLLSDQEKQQLLQRY 187
Query: 160 TVKETQVS 167
+K+TQ+
Sbjct: 188 RLKQTQLP 195
>gi|68489026|ref|XP_711626.1| hypothetical protein CaO19.13696 [Candida albicans SC5314]
gi|68489167|ref|XP_711558.1| hypothetical protein CaO19.6340 [Candida albicans SC5314]
gi|46432871|gb|EAK92334.1| hypothetical protein CaO19.6340 [Candida albicans SC5314]
gi|46432944|gb|EAK92404.1| hypothetical protein CaO19.13696 [Candida albicans SC5314]
Length = 179
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
+ ++V F DE VG+KTM+ + + +N I + Q ++TP A I +S +E
Sbjct: 39 TGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSANKLIPTVSPA-TIE 97
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+FQE +L+VNI H LVP+H L EEKK LL RY +KE+Q+
Sbjct: 98 IFQENDLIVNITHHELVPKHLKLNREEKKELLTRYRLKESQLP 140
>gi|83315225|ref|XP_730701.1| RNA polymerase Rpb5 [Plasmodium yoelii yoelii 17XNL]
gi|23490506|gb|EAA22266.1| RNA polymerase Rpb5, C-terminal domain, putative [Plasmodium yoelii
yoelii]
Length = 112
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 83 MKTY--TNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVL 140
MK Y T +M +++ RAILV Q LTPFA+ I+E + + +E F + ELLVNI +H L
Sbjct: 1 MKNYRLTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHEL 60
Query: 141 VPEHQVLTNEEKKTLLKRYTVKETQVS 167
VP+H LT++EK+ LL+RY +KE ++
Sbjct: 61 VPKHIPLTSDEKRNLLQRYKIKENKLP 87
>gi|70938710|ref|XP_739995.1| DNA-directed RNA polymerase 2 [Plasmodium chabaudi chabaudi]
gi|56517394|emb|CAH79759.1| DNA-directed RNA polymerase 2, putative [Plasmodium chabaudi
chabaudi]
Length = 126
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 83 MKTY--TNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVL 140
MK Y T +M +++ RAILV Q LTPFA+ I+E + + +E F + ELLVNI +H L
Sbjct: 1 MKNYRLTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHEL 60
Query: 141 VPEHQVLTNEEKKTLLKRYTVKETQVS 167
VP+H LT++EK+ LL+RY +KE ++
Sbjct: 61 VPKHIPLTSDEKRNLLQRYKIKENKLP 87
>gi|119589956|gb|EAW69550.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_c [Homo sapiens]
gi|194381594|dbj|BAG58751.1| unnamed protein product [Homo sapiens]
Length = 117
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 55/78 (70%)
Query: 90 MKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTN 149
M+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPEH V+T
Sbjct: 1 MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60
Query: 150 EEKKTLLKRYTVKETQVS 167
EE LL RY ++E Q+
Sbjct: 61 EEVTELLARYKLRENQLP 78
>gi|322700991|gb|EFY92743.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Metarhizium
acridum CQMa 102]
Length = 250
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 39/201 (19%)
Query: 6 EEIKRLFRIRRTVMQMLRDRG------------------------------------YFV 29
+E+ RL+R RTV +M+ DR Y
Sbjct: 11 KEVVRLWRAWRTVHEMVADRPCDHIRPTRPPQTDPFIQEYELAEEEVNISLDRFRDEYCN 70
Query: 30 GDFEINMSKEQFIAKFGENMKREDLVINKALRNDS---SDQIYVFFPDEQKVGVKTMKTY 86
D +N SK QF A+ + M +++ D ++V F +++ GV ++ +
Sbjct: 71 PDGSVNRSKLQFSARPSDAMLKKNTPPATESNPDPIPDCGPVWVEFLTDKQFGVGQIRQF 130
Query: 87 TNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQV 146
S N I+V L+P AR + + +E F E +LLVNI H LVP H +
Sbjct: 131 AKYTISNNYKTGIMVTHVPLSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVL 190
Query: 147 LTNEEKKTLLKRYTVKETQVS 167
L+ +EK LLKRY +KETQ+
Sbjct: 191 LSRDEKSALLKRYRLKETQLP 211
>gi|167517495|ref|XP_001743088.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778187|gb|EDQ91802.1| predicted protein [Monosiga brevicollis MX1]
Length = 176
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 48/173 (27%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG-----ENMKREDL-- 54
L+ + RL+R+R T+ Q+ +DRGY V ++ +++E F +FG E +R DL
Sbjct: 5 ALNQSLLYRLWRVRVTLAQLCQDRGYDVKSEDLLLTREGFAERFGSQPLNEQPRRSDLDF 64
Query: 55 VINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
V+ +A +D +DQ+ V+F ++ KVG+ ++ +
Sbjct: 65 VVQRA--SDPTDQLGVYFANDPKVGIAVVRDF---------------------------- 94
Query: 115 QEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F+E EL+VN+ +H LVP+H + T EEK LL+RY +KE Q+
Sbjct: 95 -----------FEEKELVVNVTKHELVPKHFLQTPEEKAALLERYKLKEQQLP 136
>gi|146418140|ref|XP_001485036.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
gi|146390509|gb|EDK38667.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 179
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++V F DE VG+KTM+ + + +N I + Q ++TP A + + A +E F
Sbjct: 41 SLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITPSANKLVPTV-APASIETF 99
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
QE++L+VNI H LVP+H L+ EKK LL RY +KE+Q+
Sbjct: 100 QESDLIVNITHHDLVPKHIKLSIGEKKELLARYRLKESQL 139
>gi|149239546|ref|XP_001525649.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146451142|gb|EDK45398.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 179
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 36 MSKEQFIAKFGENM---KREDLVINKALRNDSSDQ------IYVFFPDEQKVGVKTMKTY 86
M+ E+F AK ++M +R+ + + D+ ++V F DE VG+KTM+ +
Sbjct: 1 MTLEEFRAKVCDSMGYPQRKLMCFQATPTAEQLDKFPEMGSLWVEFCDEPSVGIKTMRNF 60
Query: 87 TNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQV 146
+ +N I + Q ++TP A I + +E FQE +L+VNI H LVP+H
Sbjct: 61 CIHISEKNFQVGIFIYQNSITPSANKLIPTVQPA-SIETFQETDLIVNITHHELVPKHIK 119
Query: 147 LTNEEKKTLLKRYTVKETQVS 167
L EEKK LL+RY +KE+Q+
Sbjct: 120 LNREEKKELLERYRLKESQLP 140
>gi|197259982|gb|ACH56539.1| RNA polymerase II [Scophthalmus maximus]
Length = 87
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%), Gaps = 5/84 (5%)
Query: 33 EINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYT 87
E++ + ++F ++FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y
Sbjct: 3 ELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKMYC 62
Query: 88 NRMKSENVFRAILVVQQNLTPFAR 111
RM+ EN+ RAI+VVQ +TP A+
Sbjct: 63 QRMQEENITRAIIVVQMGMTPSAK 86
>gi|429861288|gb|ELA35981.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 204
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 27 YFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ---IYVFFPDEQKVGVKTM 83
Y GD +N K QF A +M R+ + + + + ++V F + G+K +
Sbjct: 22 YTSGDGSVNRGKLQFSANPSADMIRKFTPPPTSQNPNPTPECGTLWVEFLADTTFGIKEI 81
Query: 84 KTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPE 143
K + + + S I+V L+P AR + I + +E F E +LLVNI +H LVP
Sbjct: 82 KKFIHHLISNKYSSGIMVTHVPLSPAARKMLVTIESFAKVECFLEEDLLVNITKHELVPR 141
Query: 144 HQVLTNEEKKTLLKRYTVKETQVS 167
H +L+ EEK LLKRY +KETQ+
Sbjct: 142 HILLSREEKIALLKRYRLKETQLP 165
>gi|225681878|gb|EEH20162.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb03]
Length = 171
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Query: 68 IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
IYV F D Q VG K ++ + + + +N I + Q ++P A + I +F E F
Sbjct: 33 IYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRF-CEHF 91
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
QE ELLVNI H LVP+H +L+ EEKK LL+RY +KE+Q+
Sbjct: 92 QEQELLVNITHHELVPKHILLSAEEKKRLLQRYRLKESQLP 132
>gi|402084014|gb|EJT79032.1| DNA-directed RNA polymerase I [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 233
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 24/184 (13%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E +RL+R RT +ML+DRGY + E+N+S ++F+ ++ + D K + S
Sbjct: 10 EARRLWRAWRTAHEMLQDRGYELSQEEVNISLDRFLQQYTDGAGNVDASKLKFSAHPSEA 69
Query: 67 QI--YVFFPDEQK----------------------VGVKTMKTYTNRMKSENVFRAILVV 102
I + P EQ+ +G++ ++++ N I++
Sbjct: 70 MIKKHTPPPTEQRPDPVPECGTVWVEFMGDASDKSLGIQAIRSFIQYTVEHNFHTGIMIT 129
Query: 103 QQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
+ ++ +R I + +E F ++LVNI H LVP+H +L+ EK LL+RY +K
Sbjct: 130 KSPISSGSRKLIGASANYATIEAFMLDDMLVNITHHELVPKHVLLSKIEKAALLERYRLK 189
Query: 163 ETQV 166
ETQ+
Sbjct: 190 ETQL 193
>gi|116196520|ref|XP_001224072.1| hypothetical protein CHGG_04858 [Chaetomium globosum CBS 148.51]
gi|88180771|gb|EAQ88239.1| hypothetical protein CHGG_04858 [Chaetomium globosum CBS 148.51]
Length = 220
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 27 YFVGDFEINMSKEQFIAKFGENMKRE---DLVINKALRNDSSDQIYV-FFPDEQKVGVKT 82
Y D N SK QF A+ E+M ++ + I+V F P++ +G+
Sbjct: 37 YTNDDGSPNRSKMQFSARPSESMIKKFTPPPTPSNPDPAPECGTIWVEFCPEKASIGINV 96
Query: 83 MKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVP 142
MK + + N ILV L+ AR + S +E F E +LLVNI H LVP
Sbjct: 97 MKKFVEHCGTNNFKAGILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVP 156
Query: 143 EHQVLTNEEKKTLLKRYTVKETQV 166
+H +L+ EEK LLKRY +KETQ+
Sbjct: 157 KHVLLSREEKTALLKRYRLKETQL 180
>gi|403257973|ref|XP_003921562.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Saimiri boliviensis boliviensis]
Length = 87
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 90 MKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTN 149
M+ EN+ RA+ VVQQ +TP A+ + +++ K LE F + ELL+NI EH LVPEH V+T
Sbjct: 1 MQEENITRALFVVQQGMTPSAKQSLVDMAPKCILEQFLQQELLINITEHELVPEHVVMTK 60
Query: 150 EEKKTLLKRYTVKETQVS 167
EE LL RY ++E Q+
Sbjct: 61 EEVTELLARYKLRENQLP 78
>gi|389749829|gb|EIM91000.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum FP-91666
SS1]
Length = 175
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 40/166 (24%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
D E L+++ RT+ ++++DRGY V D EI+M F + + + D RN
Sbjct: 6 DSEAATLWKVNRTIQELVKDRGYQVADDEIHMDLSTFESHYANSAGSVD-------RNQ- 57
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR----AILVVQQNLTPFARTCIQEISAK 120
+ +TN + +F+ +++ +TP AR
Sbjct: 58 ------------------LNFFTNLRVNPQIFKDIRSGVIIFPGIMTPSARK-------- 91
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E F EA+LLV I H LVP H VLT EEKK +L+RY +KETQ+
Sbjct: 92 --VEEFAEADLLVYITHHKLVPRHDVLTPEEKKMVLERYHLKETQL 135
>gi|340386044|ref|XP_003391518.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like, partial [Amphimedon queenslandica]
Length = 88
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Query: 3 LSDEEIK-RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVI 56
+ +EE+ RL+RIR+TVMQM DR Y V E++ + +QF +FGE + R DL I
Sbjct: 1 MDNEEVTYRLWRIRKTVMQMCHDRRYLVTQDELDQTLDQFKEQFGERPNDGHPSRNDLSI 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMK 84
A +D +DQ++VFFP++ KVG+KT+K
Sbjct: 61 LVAHNDDPTDQMFVFFPEDPKVGIKTIK 88
>gi|444509531|gb|ELV09326.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Tupaia
chinensis]
Length = 199
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 50/68 (73%)
Query: 74 DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLV 133
+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+
Sbjct: 113 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 172
Query: 134 NIKEHVLV 141
NI EH +V
Sbjct: 173 NITEHEVV 180
>gi|453084450|gb|EMF12494.1| RNA polymerase subunit [Mycosphaerella populorum SO2202]
Length = 170
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 41 FIAKFGENMKREDLVINKALRNDSSDQI---YVFFPDEQKVGVKTMKTYTNRMKSENVFR 97
F A+ E M + I + + + +I +V F +E VG+K +K + + +N +
Sbjct: 3 FTARPSEAMIKRYTPITRPGQPEKEPEIGTIHVEFANETSVGIKHLKQFAQELSEKNYYT 62
Query: 98 AILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLK 157
I V Q T A I + +E+F+E +LLVNI +H LVP+H L+ EEK+ LL+
Sbjct: 63 GIYVSQVAPTSAALKIIPSVLPTV-MEIFREEDLLVNISKHELVPKHIPLSQEEKRGLLE 121
Query: 158 RYTVKETQVS 167
RY +KETQ+
Sbjct: 122 RYRLKETQLP 131
>gi|449299839|gb|EMC95852.1| hypothetical protein BAUCODRAFT_34618, partial [Baudoinia
compniacensis UAMH 10762]
Length = 171
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 22/163 (13%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMS------------------KEQFIAKFGEN 48
E RL+RI RT QM DRGY + + E N+S + F A+
Sbjct: 9 EQSRLWRILRTAKQMCYDRGYELTEDECNISFDDFKTQYCDESGAPQRTRMNFTARPTPE 68
Query: 49 MKREDLVINKALRNDSSDQI---YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQN 105
M ++ + K D + I +V F + +G+K +KT+ + +N+ I V Q
Sbjct: 69 MNKKYSPLPKPSNPDPAPDIGTIFVQFNSDPNIGIKHLKTFAQLLSEKNLHTGIYVSQAA 128
Query: 106 LTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLT 148
T A I I A +E+F+E +LLVNI H LVP+H +L+
Sbjct: 129 PTASALKIIPTI-APLVMEIFREEDLLVNISRHELVPKHTLLS 170
>gi|300701817|ref|XP_002995033.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
gi|239603668|gb|EEQ81362.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
Length = 204
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 94/161 (58%), Gaps = 6/161 (3%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E+ ++ F R T+++M +RGY D ++ +S + FIA+F + ++ IN +N +
Sbjct: 3 EKKRKFFLCRNTLVEMCTERGY-TTDQKV-LSYDNFIAQF-PSCDKDVNSINFVCKN-AD 58
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+ + + F D++K+G +++ KS N++ ILV+ Q ++ ++ + + +E+
Sbjct: 59 NLVGIHFIDDEKIGKSSIEKVIETYKSINIYHLILVINQKMSSASQNIVN--VSDLKIEI 116
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
F++ EL+ NI +HV VP H++L + EK ++L++ + Q+
Sbjct: 117 FKDEELMFNITKHVSVPRHRILNDTEKNSILEKLKITVDQM 157
>gi|428177456|gb|EKX46336.1| hypothetical protein GUITHDRAFT_163048 [Guillardia theta CCMP2712]
Length = 231
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 32/188 (17%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN--- 62
E R+F+IR+T ML DRG+ V N +K + I +F E +++ L
Sbjct: 9 EYCSRIFQIRKTCWSMLEDRGFKV----TNENKSETIVQFKETCTDRGHILDPGLLTMRS 64
Query: 63 ----DSSDQIYVFF--------PDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA 110
+ +I V F D+ K + ++E++ A++++ +NLT +A
Sbjct: 65 HRVENEKQRIMVLFCGRKDKFVTDDAKYVFSCIDDEWKNTQAESL-TAVVIIHKNLTSYA 123
Query: 111 -RTCIQEISAKFH-----------LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
R + E ++H L +F E EL+VNI EH +VP+H++++ EKK LL+R
Sbjct: 124 KRFLVTEHQKRYHGGGEGPRMKIELNIFFEVELVVNITEHEMVPKHRIMSGVEKKKLLQR 183
Query: 159 YTVKETQV 166
Y V + Q+
Sbjct: 184 YKVNDDQL 191
>gi|195164197|ref|XP_002022935.1| GL16452 [Drosophila persimilis]
gi|194104997|gb|EDW27040.1| GL16452 [Drosophila persimilis]
Length = 126
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 6/95 (6%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
++DE EI +L+ IR+TV +M DRGY V E++ + EQF FG+ R DL +
Sbjct: 5 MNDEAEIYKLWHIRKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLTM 64
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMK 91
+D +++ VFFP+E KV V+T+K + NRM+
Sbjct: 65 VLTHADDPKNRMLVFFPEEPKVAVRTIKAFANRMR 99
>gi|238488995|ref|XP_002375735.1| RNA polymerase subunit [Aspergillus flavus NRRL3357]
gi|220698123|gb|EED54463.1| RNA polymerase subunit [Aspergillus flavus NRRL3357]
Length = 171
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 68 IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
IYV F PD VG K ++ + + + N + + Q ++P A + + + E F
Sbjct: 33 IYVEFCPDSTGVGTKQVRAFNHVVDENNFHTGVFITQTPISPSAVRLLSGVPGRI-CEHF 91
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
QE +LLVNI H LVP+H +L+ EEK LL RY +KE+Q+
Sbjct: 92 QEQDLLVNITRHELVPKHVLLSPEEKAKLLARYRLKESQLP 132
>gi|429961418|gb|ELA40963.1| hypothetical protein VICG_01993 [Vittaforma corneae ATCC 50505]
Length = 206
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 82/152 (53%), Gaps = 9/152 (5%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
++ L+ R T+++ML +RGY + ++ + F+++F N + +N S DQ
Sbjct: 10 MRELWLARNTIIEMLNERGYSSSNMPLDYA--SFVSQF-PNAENNPSTLNFVC---SKDQ 63
Query: 68 IY-VFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+ V F E K+ K+++T TN ++ + IL+ L P + ++ I K +LE F
Sbjct: 64 PFAVHFTSEDKLSKKSLETLTNEYAAQGIANVILITSAKLNPACKVLMKSI--KLNLEHF 121
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKR 158
EL NI +H LVP+H++++ E+K LL +
Sbjct: 122 LVEELQFNITKHHLVPKHRIMSESEQKELLNK 153
>gi|149034615|gb|EDL89352.1| rCG29511, isoform CRA_f [Rattus norvegicus]
Length = 175
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-----MKREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTP 108
+D +DQ++VFFP E G + + + F + + +++P
Sbjct: 64 HNDDPTDQMFVFFPGEGPWAGSSGILWGPPVLVAAACFVPVFPWEASISP 113
>gi|70996052|ref|XP_752781.1| RNA polymerase subunit [Aspergillus fumigatus Af293]
gi|66850416|gb|EAL90743.1| RNA polymerase subunit [Aspergillus fumigatus Af293]
gi|159131535|gb|EDP56648.1| RNA polymerase subunit [Aspergillus fumigatus A1163]
Length = 171
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 68 IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
IYV F D VG K ++ + + + N + + Q ++P A + I + E F
Sbjct: 33 IYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRI-CEHF 91
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
QE +LLVNI H LVP+H +L+ EEKK LL+RY +KE+Q+
Sbjct: 92 QEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLP 132
>gi|90954539|emb|CAJ44464.1| RNA polymerase subunit 2RPB5 [Trypanosoma brucei brucei]
gi|261333514|emb|CBH16509.1| DNA-directed RNA polymerases II subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 219
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 10/161 (6%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF----GENMKREDLVIN-KALRNDS 64
R+FR+ RTV +M+RDR Y V I + QF ++ G+ + RE + + + +
Sbjct: 17 RMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQYVDREGKRIYRERMTVPCERVGGTH 76
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR---TCIQEISAKF 121
+ VFF E +G++ MK Y N R I+V + + CI
Sbjct: 77 RSRAMVFFASE--LGMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYVDCINRSGTGQ 134
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
+++F E +L+VNI H LVP+H L +EE K +L+ ++++
Sbjct: 135 KVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSLE 175
>gi|429965029|gb|ELA47026.1| hypothetical protein VCUG_01471 [Vavraia culicis 'floridensis']
Length = 223
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 84/143 (58%), Gaps = 17/143 (11%)
Query: 12 FRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVF 71
+ +R+T+++ML DRGY + ++++ ++F+ K+ +K D + + + ++VF
Sbjct: 34 YLVRKTMLEMLSDRGYPIKEYQMK-DYDEFVNKYPSCVK--DTSNLRIIVQKDKEMLFVF 90
Query: 72 FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE------V 125
F DE+K+ +K +K ++ +N+ I+V+++ ++P A +KF LE +
Sbjct: 91 FSDEEKMSLKNVKILVENIEKQNIKNLIVVLREGISPAA--------SKFALECPVNITI 142
Query: 126 FQEAELLVNIKEHVLVPEHQVLT 148
F+E ELL N+ +H LV +H+++T
Sbjct: 143 FKEKELLFNVTKHSLVFKHRIIT 165
>gi|71748956|ref|XP_827817.1| DNA-directed RNA polymerases II subunit [Trypanosoma brucei
TREU927]
gi|70833201|gb|EAN78705.1| DNA-directed RNA polymerases II subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 219
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF----GENMKREDLVIN-KALRNDS 64
R+FR+ RTV +M+RDR Y V I + QF ++ G + RE + + + +
Sbjct: 17 RMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQYVDREGRRIYRERMTVPCERVGGTH 76
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR---TCIQEISAKF 121
+ VFF E +G++ MK Y N R I+V + + CI
Sbjct: 77 RSRAMVFFASE--LGMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYVDCINRSGTGQ 134
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
+++F E +L+VNI H LVP+H L +EE K +L+ ++++
Sbjct: 135 KVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSLE 175
>gi|346325153|gb|EGX94750.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Cordyceps
militaris CM01]
Length = 334
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 37 SKEQFIAKFGENMKREDLVINKALRNDS---SDQIYVFFPDEQKVGVKTMKTYTNRMKSE 93
+K QF A+ + M R+ D I+V F +++ GV ++ + +
Sbjct: 104 AKLQFSARPSDAMLRKHTPPATDANPDPVADCGPIWVEFLADKQFGVAQIRQFAKYTITN 163
Query: 94 NVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKK 153
+ I+V L+P AR + + +E F E +LLVNI H LVP H +L+ EEK
Sbjct: 164 HYKTGIMVTHVALSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKI 223
Query: 154 TLLKRYTVKETQV 166
LLKRY +KETQ+
Sbjct: 224 ALLKRYRLKETQL 236
>gi|326499964|dbj|BAJ90817.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 132
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
D + + F + V + ++ ++++ EN+ R IL++ + P A+ ++E F +++
Sbjct: 26 DGVKILFCPPEPVRIANIQEIHDQIEGENLSRLILILLGKIMPRAKESVKE-KFTFKVDI 84
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
FQ ELLVNI +H L P+H+VLT EEK LLK Y V+++QV
Sbjct: 85 FQVNELLVNISKHDLKPKHEVLTAEEKAKLLKLYNVEDSQV 125
>gi|68074989|ref|XP_679411.1| DNA-directed RNA polymerase 2 [Plasmodium berghei strain ANKA]
gi|56500155|emb|CAI00595.1| DNA-directed RNA polymerase 2, putative [Plasmodium berghei]
Length = 107
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ + R ++ R+T +ML DRGY + E + F F EN K R + I + +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTP 108
++++I V+F DE +K GVK ++ T +M +++ RAILV Q LTP
Sbjct: 62 ANNKIIVYFVDEVKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTP 107
>gi|344239060|gb|EGV95163.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Cricetulus griseus]
Length = 112
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 70 VFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEA 129
VFFP+E V +KT+K Y ++ EN+ R ++VVQ+ + P + + +++ K+ LE F +
Sbjct: 3 VFFPEEPTVDIKTIKVYCQCIQEENITRVLIVVQEGMMPSDKQSLVDMAPKYVLEQFLQQ 62
Query: 130 ELLVNIKEHVLVPEH 144
ELL+NI EH LV EH
Sbjct: 63 ELLINITEHELVLEH 77
>gi|413949944|gb|AFW82593.1| hypothetical protein ZEAMMB73_065125 [Zea mays]
Length = 142
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 36/39 (92%)
Query: 128 EAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
E E+ +NIKEHVLVPEH VLTNEEKKTLL++YT+KETQV
Sbjct: 36 EVEMFINIKEHVLVPEHHVLTNEEKKTLLEQYTLKETQV 74
>gi|407846764|gb|EKG02755.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
Length = 219
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG---ENMKREDLVINKALRNDSS- 65
++FR+ RTV +M+ DR Y V D I S E+F + E + D + R S
Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTDPREGVIHRDRMTVPCERIGVSQ 76
Query: 66 -DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI---SAKF 121
+ VFF + + ++TMK Y + N R I+VVQ + + +++I S
Sbjct: 77 RSRAMVFF--SEGLSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSSLGL 134
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
+++F E +L+VNI H LVP+H L +EE K +L+ ++++
Sbjct: 135 KIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHSLE 175
>gi|161899423|ref|XP_001712938.1| RNA polymerase I, II and III [Bigelowiella natans]
gi|75756432|gb|ABA27326.1| RNA polymerase I, II and III [Bigelowiella natans]
Length = 204
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK--REDLVINKALRNDS 64
+++ + ++ +ML RGY+V +N++ QF K E + + +IN ND+
Sbjct: 5 SLEKYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEKKRYFKSFKIINHL--NDT 62
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
+++I F+ ++ + V + + K+ N I + ++ L+ + F++E
Sbjct: 63 NNKIIGFYNNKGLIDVNYLGLKIEKAKTNNSNSIIFITKRYLSKQTNIALSHFRRNFNIE 122
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+F E E+L+N +H LVP+H +L + K+ +LK Y VK++Q+
Sbjct: 123 IFFEYEILINPIKHFLVPKHVLLAPDIKRKILKSYNVKDSQL 164
>gi|413923120|gb|AFW63052.1| hypothetical protein ZEAMMB73_163602 [Zea mays]
Length = 222
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 40/59 (67%), Gaps = 6/59 (10%)
Query: 108 PFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
P A C+ + E E+ +NIKEHVLV EH VLTNEEKKTLL+RYT+KETQV
Sbjct: 98 PHAPPCVPPAI------LASEVEMFINIKEHVLVSEHHVLTNEEKKTLLERYTLKETQV 150
>gi|22902245|gb|AAH37681.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|148699663|gb|EDL31610.1| mCG13422, isoform CRA_c [Mus musculus]
Length = 96
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-----MKREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDE 75
A +D +DQ++VFFP E
Sbjct: 63 AHNDDPTDQMFVFFPGE 79
>gi|71660313|ref|XP_821874.1| DNA-directed RNA polymerases II [Trypanosoma cruzi strain CL
Brener]
gi|71664576|ref|XP_819267.1| DNA-directed RNA polymerases II [Trypanosoma cruzi strain CL
Brener]
gi|19718719|gb|AAL96367.1|AC116314_4 Tcc44h21-2.4 [Trypanosoma cruzi]
gi|70884561|gb|EAN97416.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
gi|70887263|gb|EAO00023.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
Length = 219
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 14/163 (8%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS---- 65
++FR+ RTV +M+ DR Y V D I S E+F + + RE ++ +
Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD--PREGVIYRDRMTVPCERIGV 74
Query: 66 ---DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI---SA 119
+ VFF + + ++TMK Y + N R I+VVQ + + +++I S
Sbjct: 75 SQRSRAMVFF--SEGLSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSSL 132
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
+++F E +L+VNI H LVP+H L +EE K +L+ + ++
Sbjct: 133 GLKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHALE 175
>gi|212533615|ref|XP_002146964.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
gi|210072328|gb|EEA26417.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
Length = 172
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 65 SDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
QI+V F D VG K ++ + + + N I + + ++P A + SA H+
Sbjct: 31 CGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIFITRTAISPSAVRLLN--SAIGHI 88
Query: 124 -EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
E FQE++LLVNI H LVP+H +L+ EEK LL+RY +KE+Q+
Sbjct: 89 CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYRLKESQLP 133
>gi|407407449|gb|EKF31248.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi
marinkellei]
Length = 219
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS---- 65
++FR+ RTV +M+ DR Y V D I S E+F + + RE ++ +
Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD--PREGVIYRDRMTVPCERIGV 74
Query: 66 ---DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI---SA 119
+ VFF + + ++TMK Y + N R I+V Q + + +++I S
Sbjct: 75 SQRSRAMVFF--SEGLSMETMKRYHTQASEANCDRVIIVAQGKINAIVKRHVEDINRSSL 132
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
+++F E +L+VNI H LVP+H L +EE K +L+ + ++
Sbjct: 133 GLKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHALE 175
>gi|401827017|ref|XP_003887601.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
gi|392998607|gb|AFM98620.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
Length = 200
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-KREDLVINKALRNDSS 65
E++ L R T ++M++DRGY E+ E F K+ + KR L + D
Sbjct: 4 ELRALCLSRNTTIEMVKDRGYTTTQ-EVQ-PLESFREKYPFALTKRSSL---NFVCVDVD 58
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+ + F D++K+G K+ + ++ + +N+F IL++ Q +P + I ++AKF++E+
Sbjct: 59 RPVAIHFGDDEKMGKKSFEGLLSQYEKDNIFHLILILPQMPSPAVMSMIA-LNAKFNVEI 117
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLK 157
F E++ N +H VP H++L+ EE++ + K
Sbjct: 118 FLVEEMMFNKTKHSWVPPHRILSREERENVFK 149
>gi|396081727|gb|AFN83342.1| DNA-directed RNA polymerase I [Encephalitozoon romaleae SJ-2008]
Length = 210
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-KREDLVINKALRNDSS 65
E++ L R T ++M++DRGY E+ S E F ++ + KR L + D
Sbjct: 14 ELRALCLSRNTTIEMIKDRGYTTTQ-EVQ-SLESFHERYPFALTKRSTL---NFVCVDVD 68
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+ + F D++K+G K + ++ + +N+F IL++ Q +P + I ++ KF++E+
Sbjct: 69 RPVGIHFGDDEKMGKKGFEGLLSQYEKDNIFHLILILPQFPSPTVMSMIS-LNPKFNVEI 127
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLK 157
F E++ N +H VP H++L+ EEK+ +LK
Sbjct: 128 FLVEEMVFNKTKHSWVPPHRILSREEKENVLK 159
>gi|145481253|ref|XP_001426649.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393725|emb|CAK59251.1| unnamed protein product [Paramecium tetraurelia]
Length = 224
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 93/176 (52%), Gaps = 20/176 (11%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL---RNDS 64
IK+ +++ +T+ M+R RGYF + I + E F + E R D++ + + + D
Sbjct: 14 IKKKYKVFQTLASMIRQRGYFEANPPILIEDEPF--ELFEAKYRTDVLPQRVVCFKKEDE 71
Query: 65 SDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA-RTCIQEISAKFH 122
+D++ + F+ + + K Y + + + V R I+V + PFA + + E A+F
Sbjct: 72 TDKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTD--PFATKPQVVEKKARFF 129
Query: 123 L-----------EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ E+F E +L+ ++ +H LVP+H +L ++EK+ LLK+Y + + Q+
Sbjct: 130 IDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLP 185
>gi|392512756|emb|CAD25628.2| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 202
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 83/155 (53%), Gaps = 13/155 (8%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN---- 62
E++ L R T ++M+RDRGY + ++ +A G + + + ++ N
Sbjct: 4 ELRALCLSRNTAIEMVRDRGY--------TTTQEVLALDGFHERYPLALTKRSTLNFVCV 55
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ + V F D++K+G K + ++ + +N+F IL++ Q +P + I ++ +F
Sbjct: 56 NVDRPVAVHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTVMSMIP-LTPRFS 114
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLK 157
+E+F EL+ N +H VP H+VL+ EE++++ +
Sbjct: 115 IEIFLVEELIFNKTKHSWVPPHRVLSREERESVFR 149
>gi|19074518|ref|NP_586024.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329590|gb|AGE95861.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 212
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 83/155 (53%), Gaps = 13/155 (8%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN---- 62
E++ L R T ++M+RDRGY + ++ +A G + + + ++ N
Sbjct: 14 ELRALCLSRNTAIEMVRDRGY--------TTTQEVLALDGFHERYPLALTKRSTLNFVCV 65
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ + V F D++K+G K + ++ + +N+F IL++ Q +P + I ++ +F
Sbjct: 66 NVDRPVAVHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTVMSMIP-LTPRFS 124
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLK 157
+E+F EL+ N +H VP H+VL+ EE++++ +
Sbjct: 125 IEIFLVEELIFNKTKHSWVPPHRVLSREERESVFR 159
>gi|388498148|gb|AFK37140.1| unknown [Lotus japonicus]
Length = 150
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAIL-VVQQNLTPFARTCIQEISA 119
+++S V F V V +++ ++ +++ +L +V+ N+T A I S
Sbjct: 31 KSNSPSLNSVIFCGPGVVKVTSIRNIAGQIVNKDTLSGVLLIVENNITGQALKAINLFS- 89
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F +E+FQ +LLVNI +HVL P+HQVLT+ +KK LLK++ ++E Q+
Sbjct: 90 -FKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLP 136
>gi|342184881|emb|CCC94363.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma
congolense IL3000]
Length = 219
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDL-----VINKALRNDS 64
R+FR+ RTV +M+RDR Y I + EQF ++ + RE + + +
Sbjct: 17 RMFRVLRTVGEMMRDRKYHFPTSLIPETVEQFCEQYVDRDTREIFRSRMTLPCERVGGSQ 76
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS---AKF 121
+ VFF E +G++ MKTY R I+VV + + + I+
Sbjct: 77 RGRAMVFFSVE--LGMEAMKTYYQSAMDAGCDRVIIVVHSKVNATVKRYVDYINRSNTGA 134
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
+++F E L+VNI H LVP+H L +EE + +L+ ++++
Sbjct: 135 KVQLFDEDSLVVNITHHELVPKHTPLEDEEVREMLRAHSLE 175
>gi|145481865|ref|XP_001426955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394033|emb|CAK59557.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 97/185 (52%), Gaps = 41/185 (22%)
Query: 9 KRLFRIRRTVMQMLRDRGYF-------VGD--FEINMSKEQFIAKFGENMKREDLVINKA 59
K+ ++I +T+ M+R RGYF V D FEI F +K+ +N+ E +V K
Sbjct: 15 KKKYKIFQTLASMIRQRGYFESTPAKLVEDETFEI------FESKYRDNLP-EKIVCFK- 66
Query: 60 LRNDSSDQIYVFF-----PDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA---- 110
R+D SD++ + F P + KT++ ++NR V R I++ + PFA
Sbjct: 67 -RDDESDKLLIIFYTKQAPLTHEEAKKTIQDFSNR----QVKRLIMIFPTD--PFATKPQ 119
Query: 111 ------RTCIQEISA--KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
R I ++++ + E+F E +L+ ++ +H LVP+H +L + EK+ LLK+Y +
Sbjct: 120 VVDKKARLFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYGLV 179
Query: 163 ETQVS 167
+ Q+
Sbjct: 180 DNQLP 184
>gi|401404940|ref|XP_003881920.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Neospora caninum Liverpool]
gi|325116334|emb|CBZ51887.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Neospora caninum Liverpool]
Length = 150
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 63 DSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
D +++ V+F DE +K GVK ++ T RM+ N+ RAILV Q LT FAR I E + +
Sbjct: 10 DPDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRH 69
Query: 122 HLEVFQEAELLV 133
+E F E+ELLV
Sbjct: 70 IIENFMESELLV 81
>gi|323305973|gb|EGA59708.1| Rpb5p [Saccharomyces cerevisiae FostersB]
Length = 114
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSEN 94
I +V F DE VGVKTMKT+ ++ +N
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKN 104
>gi|356506928|ref|XP_003522225.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Glycine max]
Length = 183
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 81/149 (54%), Gaps = 7/149 (4%)
Query: 21 MLRDRGY-FVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVG 79
ML+DRGY + I+ S +F ++F +N + L S+ + V F +++
Sbjct: 1 MLQDRGYDAIQHANISPSLTEFCSRFSQNPNPQTL---DFCVPHLSNTVQVVFVGPKEIR 57
Query: 80 VKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEH 138
T+ +++ + + ILVV+ +T FA+ ++ F +E + +LLVNI +H
Sbjct: 58 KGTVNEICSQIADKGSLKWLILVVKSKMTSFAKKDLENFP--FKVETIKIDDLLVNITKH 115
Query: 139 VLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
VL P++++LT++EK+ LL ++ + E Q+
Sbjct: 116 VLQPKYEILTDDEKQALLTKHNLDEKQLP 144
>gi|380495005|emb|CCF32725.1| DNA-directed RNA polymerase II polypeptide [Colletotrichum
higginsianum]
Length = 107
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 100 LVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRY 159
+V L+P AR + I + +E F E +LLVNI +H LVP+H +L+ EEK LLKRY
Sbjct: 1 MVTHVPLSPAARKMLITIESFAKVECFLEEDLLVNITQHELVPKHILLSREEKVALLKRY 60
Query: 160 TVKETQVS 167
+KETQ+
Sbjct: 61 RLKETQLP 68
>gi|323310097|gb|EGA63291.1| Rpb5p [Saccharomyces cerevisiae FostersO]
Length = 114
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTY 86
I +V F DE VGVKTMKT+
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTF 96
>gi|340057896|emb|CCC52248.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma vivax
Y486]
Length = 308
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 10/163 (6%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN----MKREDLVIN-KALRNDS 64
R+FR+ RTV +M+RDR Y + I S EQF + + + RE + + + +
Sbjct: 106 RMFRVMRTVGEMMRDRKYNIACNVIPESVEQFREWYTDQHSNAILRERMTVPCERVCGPQ 165
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI---SAKF 121
+ VFF Q +G++ +K Y S+N R I+V + + + ++
Sbjct: 166 RSRAMVFF--SQGLGMEAVKQYIMTANSDNCDRLIIVTSGKVNATVKRHVDDVNRTGVAL 223
Query: 122 HLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKET 164
+++F E +L+VNI H LVP+H L EE+K +L+ ++++++
Sbjct: 224 KIQLFDEDDLVVNITHHELVPKHTQLEEEEEKEMLQSHSLEKS 266
>gi|147776024|emb|CAN60800.1| hypothetical protein VITISV_022856 [Vitis vinifera]
Length = 162
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
I V F ++ ++ ++ E + R ILV+Q + AR + E K +E FQ
Sbjct: 26 ILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFFQ 83
Query: 128 EAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQ 165
ELL+NI +HV VP+H++L+ +EK+ L+ +Y +++ Q
Sbjct: 84 ITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQ 121
>gi|303389965|ref|XP_003073214.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
gi|303302359|gb|ADM11854.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
Length = 214
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 79/151 (52%), Gaps = 13/151 (8%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN---- 62
E++ L R T ++M++DRGY + Q + +F E K + ++ N
Sbjct: 18 ELRALCLSRNTTIEMIKDRGY------TTTQEVQTLDEFHE--KYPFALTKRSTLNFVCV 69
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D++ + + F +++K+G K + + + +N+F IL++ +P + I ++ KF
Sbjct: 70 DTNRPVAIHFGEDEKMGKKVFEGLLTQYEKDNIFHLILILPLAPSPTVMSMIS-LNPKFC 128
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKK 153
+E+F E++ N +H VP H++L+ EEK+
Sbjct: 129 IEIFLVEEMIFNKTKHSWVPPHRILSREEKE 159
>gi|169806439|ref|XP_001827964.1| DNA-directed RNA polymerase, subunit H, RpoH-RPB5 [Enterocytozoon
bieneusi H348]
gi|161779104|gb|EDQ31129.1| DNA-directed RNA polymerase, subunit H, RpoH-RPB5 [Enterocytozoon
bieneusi H348]
Length = 202
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 7/152 (4%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN--DS 64
++ L+ R T+++ML DRGY + + I E F F N++ A+RN D
Sbjct: 5 SVRDLWLARNTIIEMLTDRGY-IFEQSIFSQLEDFKNTF--NLEDSTSCNFTAIRNVNDK 61
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
+ F K+ K ++T ++++ + IL+ L A + + + F +E
Sbjct: 62 VILCAIHFTSNDKLSKKQIETIITDYSNQSISKLILISCNKLNHAALAYLDK--SNFSIE 119
Query: 125 VFQEAELLVNIKEHVLVPEHQVLTNEEKKTLL 156
+F ++L N +H+LVP H++++ EEK TLL
Sbjct: 120 LFLYKDILFNPTKHILVPHHKIMSIEEKTTLL 151
>gi|308160666|gb|EFO63141.1| RNA polymerase II subunit Rpb5a [Giardia lamblia P15]
Length = 229
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 12 FRIRRTVMQMLRDRGYFV---------GDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
F++RRTV++ML DRGY V + +N + + F +F ++ LR
Sbjct: 11 FKVRRTVVEMLIDRGYMVQSDDMSPWSAEMLLNQTFQDFDGEFHTAPFSWKILGTHKLRK 70
Query: 63 DSSDQI------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVV----QQNLTPFART 112
S++ + P K + +K T ++ + R I V+ + L P +T
Sbjct: 71 SSANSLNQETIKVRPVPVIDKDLIDKLKVETQNRETRPLDRIIYVIYGREGKKLDPPNKT 130
Query: 113 CIQEI-----SAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
I + +E F LL+NI +HVLVP+H +L+ EK +LK Y E Q+
Sbjct: 131 IQARIDEAQRANGIVIEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKEYRCTEGQIP 190
>gi|159108363|ref|XP_001704453.1| RNA polymerase II subunit Rpb5a [Giardia lamblia ATCC 50803]
gi|21842211|gb|AAM77735.1|AF510643_1 RNA polymerase II subunit Rpb5a [Giardia intestinalis]
gi|157432516|gb|EDO76779.1| RNA polymerase II subunit Rpb5a [Giardia lamblia ATCC 50803]
Length = 229
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 12 FRIRRTVMQMLRDRGYFV---------GDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
F++RRTV++ML DRGY V + +N + + F +F ++ LR
Sbjct: 11 FKVRRTVIEMLIDRGYMVQSDDMSPWSAEMLLNQTFQDFDGEFHTAPFSWKILGTHKLRK 70
Query: 63 DSSDQI------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVV---------QQNLT 107
S++ + P K + +K T ++ + R I V+ N T
Sbjct: 71 SSANSLNQETIKVRPVPVIDKDLIDKLKVETQNRETRPLDRVIYVIYGREGKKLDSPNKT 130
Query: 108 PFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
AR + + +E F LL+NI +HVLVP+H +L+ EK +LK Y E Q+
Sbjct: 131 IQARIDEAQRANGIVIEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKEYRCTEGQIP 190
>gi|83315223|ref|XP_730700.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23490505|gb|EAA22265.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 91
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ + R ++ R+T +ML DRGY + E + F F EN K R + I + +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKS 92
++++I V+F DE +K GVK ++ Y ++K
Sbjct: 62 ANNKIIVYFVDEVKKTGVKPLREYNKKIKD 91
>gi|149034609|gb|EDL89346.1| rCG29511, isoform CRA_b [Rattus norvegicus]
Length = 167
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 17 TVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-----MKREDLVINKALRNDSSDQIYVF 71
+ Q+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VF
Sbjct: 8 SASQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 67
Query: 72 FPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTP 108
FP E G + + + F + + +++P
Sbjct: 68 FPGEGPWAGSSGILWGPPVLVAAACFVPVFPWEASISP 105
>gi|149595717|ref|XP_001520959.1| PREDICTED: hypothetical protein LOC100092316, partial
[Ornithorhynchus anatinus]
Length = 157
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 15 RRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-----MKREDLVINKALRNDSSDQIY 69
R Q+ DRGY V E++ + E+F +FG+ +R DL + A +D +DQ++
Sbjct: 46 RNAPFQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 105
Query: 70 VFFPDE 75
VFFP E
Sbjct: 106 VFFPGE 111
>gi|357456709|ref|XP_003598635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355487683|gb|AES68886.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 124
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+ E R F R+T+M ML DRGY V + ++ +S +F ++FGE K L ++ +LR++
Sbjct: 23 SNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFPKPHTLGVSVSLRSN 82
Query: 64 SSDQI 68
S ++
Sbjct: 83 PSIKV 87
>gi|401419204|ref|XP_003874092.1| putative DNA-directed RNA polymerases II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490326|emb|CBZ25586.1| putative DNA-directed RNA polymerases II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 239
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 30/191 (15%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK---------------- 50
E+ + FRI +T +M+ DR Y V + S +FI ++ E ++
Sbjct: 10 ELHKCFRILQTSAEMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDA 69
Query: 51 --------RED---LVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAI 99
R D L + + ++ + V+F + + +K +E R +
Sbjct: 70 PPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRVV 129
Query: 100 LVVQQNLTPFARTCIQEISAK---FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLL 156
V P R + + E+F+E EL VNI H LVP+H L+ EE K +L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELKDVL 189
Query: 157 KRYTVKETQVS 167
+ ++ Q+
Sbjct: 190 HAHALELHQLP 200
>gi|308158149|gb|EFO60958.1| RNA polymerase II subunit Rpb5b [Giardia lamblia P15]
Length = 201
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFE--INMSKEQFIAKFGENMKREDLVINKALRND-S 64
+ + R+ V++M RDRGY +G E I +S E+ +N+ + ++ +
Sbjct: 6 LDHIARVHTVVLEMYRDRGYELGPLEKQIGLSAEEIGRLIDDNVNNLRPLWFVTIKGSVA 65
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE--ISAKFH 122
+ +Y P V + E V + + V A +C E +
Sbjct: 66 AAVVYSILP-----WVDASAAIGQYVDQEAVQKCLFVY---FGGPATSCRLEHRVINDVE 117
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
++++ ++LL+N +H LVP+H +L+N EK +L V E Q+
Sbjct: 118 IDIYDFSQLLINPTKHRLVPKHTILSNTEKAKVLAELRVTEAQIP 162
>gi|428163062|gb|EKX32155.1| hypothetical protein GUITHDRAFT_82572, partial [Guillardia theta
CCMP2712]
Length = 81
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 126 FQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
F +EL VNI H LVP+H VLT E+KKTLLKRY ++E +
Sbjct: 1 FLASELKVNITRHELVPQHYVLTEEDKKTLLKRYHLQEKHLP 42
>gi|253741620|gb|EES98486.1| RNA polymerase II subunit Rpb5a [Giardia intestinalis ATCC 50581]
Length = 229
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 12 FRIRRTVMQMLRDRGYFVGDFEIN-MSKEQFIAKFGENMKRE--------DLVINKALRN 62
F++RRTV++ML DRGY V +I+ S E + + ++ + E ++ LR
Sbjct: 11 FKVRRTVVEMLIDRGYMVQSDDISPWSAEMLLGQTFQDFEAEFHTAPFSWKILGTHKLRK 70
Query: 63 DSSDQI------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVV---------QQNLT 107
+++ + P K + ++ T ++ + R I V+ N T
Sbjct: 71 SNANSLNQETIKVRPVPVIDKELIDKLRVETQNKETRPLDRIIYVIYGREGKKLDSPNKT 130
Query: 108 PFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
AR + +E F LL+NI HVLVP+H +L+ EK +LK Y E Q+
Sbjct: 131 IQARIDEAQRVNGIIIEHFLVTRLLINITRHVLVPKHVLLSEMEKSVVLKEYRCTEGQIP 190
>gi|326488034|dbj|BAJ89856.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 108
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
+ +E RLF RRT ++MLRDRGY V + E+ + +F A + + + E L + L +D
Sbjct: 25 ASQESHRLFLARRTALEMLRDRGYSVPESELARTLPEFRAWWAQEPEIERLSFSTFLASD 84
Query: 64 SSDQIYVFF 72
SD++ +
Sbjct: 85 HSDKVSLLL 93
>gi|154417816|ref|XP_001581927.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121916159|gb|EAY20941.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 217
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 21/177 (11%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGY-FVGDFEI------NMSKEQFIAKFGENMKREDLVI 56
S E I + + R + QM+ R Y + D EI M ++F A + +++K
Sbjct: 8 SPEMINKCLKACRVISQMMAARQYESLDDDEIFSVITDEMEIDEFEATY-DSIKNTHYFR 66
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMK-----TYTNRMKSENVFRAILVVQQNLTP--F 109
N N +++ + + F K+ KT K YTN K + ILV Q+ F
Sbjct: 67 N----NTTTEALAIVFDFRDKLTHKTFKEDYFKYYTNADKP--ITHLILVHQEGSLAHIF 120
Query: 110 ARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
R Q LE F EL NI H VP+H+VL+NEEK L RY + ET++
Sbjct: 121 DRIKKQLRLIGKKLETFTLQELQYNITMHFFVPKHKVLSNEEKNELFNRYKIDETKL 177
>gi|146083991|ref|XP_001464893.1| putative DNA-directed RNA polymerases II [Leishmania infantum
JPCM5]
gi|398013799|ref|XP_003860091.1| DNA-directed RNA polymerases II, putative [Leishmania donovani]
gi|134068988|emb|CAM67131.1| putative DNA-directed RNA polymerases II [Leishmania infantum
JPCM5]
gi|322498310|emb|CBZ33384.1| DNA-directed RNA polymerases II, putative [Leishmania donovani]
Length = 239
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 30/191 (15%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK---------------- 50
E + FRI +T +M+ DR Y V + S +FI ++ E ++
Sbjct: 10 EFHKCFRILQTSAEMMSDRKYKVAQHVVPSSLGEFIERYVEEVEVTEDGGAAVGGGPNDA 69
Query: 51 --------RED---LVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAI 99
R D L + + ++ + V+F + + +K +E R +
Sbjct: 70 PPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRVV 129
Query: 100 LVVQQNLTPFARTCIQEISAK---FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLL 156
V P R + + E+F+E EL VNI H LVP+H L+ EE +L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHSPLSEEELTDVL 189
Query: 157 KRYTVKETQVS 167
+ + ++ Q+
Sbjct: 190 QAHALELNQLP 200
>gi|157867861|ref|XP_001682484.1| putative DNA-directed RNA polymerases II [Leishmania major strain
Friedlin]
gi|68125938|emb|CAJ03739.1| putative DNA-directed RNA polymerases II [Leishmania major strain
Friedlin]
Length = 239
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 30/191 (15%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK---------------- 50
E + FRI +T +M+ DR Y V + S +FI ++ E ++
Sbjct: 10 EFHKCFRILQTSAEMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDA 69
Query: 51 --------RED---LVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAI 99
R D L + + ++ + V+F + + +K +E R +
Sbjct: 70 LPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRIV 129
Query: 100 LVVQQNLTPFARTCIQEISAK---FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLL 156
V P R + + E+F+E EL VNI H LVP+H L+ EE + +L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVL 189
Query: 157 KRYTVKETQVS 167
+ ++ Q+
Sbjct: 190 HAHALELNQLP 200
>gi|284504393|ref|YP_003407108.1| RNAP subunit Rpb5 [Marseillevirus]
gi|282935831|gb|ADB04146.1| RNAP subunit Rpb5 [Marseillevirus]
Length = 193
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 22/158 (13%)
Query: 10 RLFRIRRTVMQMLRDRGYF----VGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
+L R ++TV++M+ DRGY + D + + S+E +F +++ V R++S
Sbjct: 4 QLSRAKKTVVRMMSDRGYLPLKRLPDPKGSSSREPICWEFENEQQKKANVFWNLDRSESK 63
Query: 66 DQI--YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
YVF +V V + + + ++VV + L + + +S +
Sbjct: 64 MPFIQYVF-----EVAV-----------MDKLEQVVIVVDKGLVSKGKNTVSSMSENVDM 107
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
VF+ ++L V +HV VP H+ L+ ++K+ L++Y V
Sbjct: 108 TVFEVSDLQVITPDHVDVPPHKKLSEKKKRETLEKYGV 145
>gi|389852854|ref|YP_006355088.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. ST04]
gi|388250160|gb|AFK23013.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. ST04]
Length = 82
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 134 NIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
NI +HVLVPEH+VL+ EEKK LL++Y + Q+
Sbjct: 8 NIFDHVLVPEHRVLSEEEKKALLEKYKITPAQLP 41
>gi|159118208|ref|XP_001709323.1| RNA polymerase II subunit Rpb5b [Giardia lamblia ATCC 50803]
gi|21842214|gb|AAM77736.1|AF510644_1 RNA polymerase II subunit Rpb5b [Giardia intestinalis]
gi|157437439|gb|EDO81649.1| RNA polymerase II subunit Rpb5b [Giardia lamblia ATCC 50803]
Length = 201
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 17/167 (10%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFE--INMSKEQ---FIAKFGENMKREDLVINKALRN 62
+ + R+ V++M RDRGY +G E + +S E+ I N++ +I K
Sbjct: 6 LDHIARVHTVVLEMYRDRGYEMGPLEKQMGLSAEEVGRLIDDNVTNLRPLWFIITKG--P 63
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE--ISAK 120
++ +Y P V + E V + + V A +C E +
Sbjct: 64 VATAVVYSILP-----WVDASAAIGQYVDQEAVQKCLFVYFGGP---AISCRSEHRVIND 115
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+++ ++ L+N +H LVP+H +L+N EK +L V E Q+
Sbjct: 116 VEVDIHDFSQFLINPTKHRLVPKHTILSNTEKARVLAELRVTEAQIP 162
>gi|332157776|ref|YP_004423055.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. NA2]
gi|331033239|gb|AEC51051.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. NA2]
Length = 82
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 134 NIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
NI +HVLVPEH+VL+ EEK+ LLK+Y + Q+
Sbjct: 8 NIFDHVLVPEHRVLSEEEKEALLKKYRITPAQLP 41
>gi|238488993|ref|XP_002375734.1| DNA-directed RNA polymerase II, putative [Aspergillus flavus
NRRL3357]
gi|220698122|gb|EED54462.1| DNA-directed RNA polymerase II, putative [Aspergillus flavus
NRRL3357]
Length = 79
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM 49
+D E+ RL+R RTV +ML+DRGY V + E+ +S E+F K+ + +
Sbjct: 12 ADREMTRLWRTWRTVFEMLQDRGYEVTEEEVQISLEEFKQKYSDPL 57
>gi|14591330|ref|NP_143408.1| DNA-directed RNA polymerase subunit H [Pyrococcus horikoshii OT3]
gi|6685902|sp|O74019.1|RPOH_PYRHO RecName: Full=DNA-directed RNA polymerase subunit H
gi|3257975|dbj|BAA30658.1| 82aa long hypothetical DNA-directed RNA polymerase subunit Hprotein
[Pyrococcus horikoshii OT3]
Length = 82
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 134 NIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
NI +HVLVPEH++L+ EEKK LL++Y + Q+
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLP 41
>gi|14520829|ref|NP_126304.1| DNA-directed RNA polymerase subunit H [Pyrococcus abyssi GE5]
gi|13124530|sp|Q9V116.1|RPOH_PYRAB RecName: Full=DNA-directed RNA polymerase subunit H
gi|5458045|emb|CAB49535.1| rpoH DNA-directed RNA polymerase, subunit H [Pyrococcus abyssi GE5]
gi|380741371|tpe|CCE70005.1| TPA: DNA-directed RNA polymerase subunit H [Pyrococcus abyssi GE5]
Length = 82
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 134 NIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
NI +HVLVPEH++L+ EEKK LL++Y + Q+
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLP 41
>gi|68074991|ref|XP_679412.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500156|emb|CAI00596.1| hypothetical protein PB108754.00.0 [Plasmodium berghei]
Length = 117
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
KF+ + +VNI +H LVP H LT++EK+ LL+RY +KE ++
Sbjct: 4 KFYAFISSSCYSVVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLP 51
>gi|119587531|gb|EAW67127.1| hCG1640002 [Homo sapiens]
Length = 90
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 117 ISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
++ K+ LE F + +LL++I E+ LVPE+ V+T EE LL Y ++E Q+
Sbjct: 1 MAPKYILEQFLQQKLLIDITEYELVPEYVVMTKEEVTVLLALYKLRENQLP 51
>gi|242398378|ref|YP_002993802.1| DNA-directed RNA polymerase subunit H [Thermococcus sibiricus MM
739]
gi|259494220|sp|C6A1F8.1|RPOH_THESM RecName: Full=DNA-directed RNA polymerase subunit H
gi|242264771|gb|ACS89453.1| DNA-directed RNA polymerase subunit H [Thermococcus sibiricus MM
739]
Length = 82
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 133 VNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+ I +HVLVPEH+VL+ EE + LLK+Y +K +Q+
Sbjct: 7 LTIFDHVLVPEHRVLSKEETEELLKKYNIKPSQLP 41
>gi|253741540|gb|EES98408.1| RNA polymerase II subunit Rpb5b [Giardia intestinalis ATCC 50581]
Length = 201
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 13 RIRRTVMQMLRDRGYFVGDF--EINMSKE---QFIAKFGENMKREDLVINKALRNDSSDQ 67
R+ V++M RDRGY + ++ ++ E Q I N++ ++ K ++
Sbjct: 11 RVHTVVLEMCRDRGYDIESLRKQMGLTAEEMGQLIDNNVSNLRPLWFIVTKG--PVATAV 68
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
+Y P + E V + + + T R+ + I+ ++++
Sbjct: 69 VYSVLP-----WADASAAIGQYLDQEAVQKCLFIYFGGPTTSCRSEHRVIN-DVEIDIYD 122
Query: 128 EAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
++ L+N +H LVP+H +L++ EK +L V E Q+
Sbjct: 123 FSQFLINPTKHSLVPKHTILSSTEKARVLAELRVTEAQI 161
>gi|18977937|ref|NP_579294.1| DNA-directed RNA polymerase subunit H [Pyrococcus furiosus DSM
3638]
gi|397652058|ref|YP_006492639.1| DNA-directed RNA polymerase subunit H [Pyrococcus furiosus COM1]
gi|22096124|sp|Q8U0M2.1|RPOH_PYRFU RecName: Full=DNA-directed RNA polymerase subunit H
gi|18893707|gb|AAL81689.1| DNA-directed RNA polymerase subunit h [Pyrococcus furiosus DSM
3638]
gi|393189649|gb|AFN04347.1| DNA-directed RNA polymerase subunit H [Pyrococcus furiosus COM1]
Length = 82
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 134 NIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+I +HVLVPEH+VL+ EEKK LL++Y + Q+
Sbjct: 8 SIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLP 41
>gi|356927751|gb|AET42541.1| hypothetical protein EXVG_00192 [Emiliania huxleyi virus 202]
Length = 213
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 23/159 (14%)
Query: 11 LFRIRRTVMQMLRDRGY--FVGDFEINMSKEQFIAKFGE---NMKREDLVINKALRNDSS 65
L +ML RGY GD + +G +M+ ++ + N
Sbjct: 22 LLNCANVAKEMLTARGYECIKGD----------VTSYGAIEYSMENTTPLLTGSFSNRCR 71
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKS--ENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
V+F +E KVGVK ++ ++ + E+V ++ VQ T + H+
Sbjct: 72 PDSVVYFFNELKVGVKIVRDLLEKLDATPESVHLILVSVQ------GSTSSRPAHKMDHV 125
Query: 124 EVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
E ++ NI +HVLVP+H + E+ ++ +T K
Sbjct: 126 EFLTYKQMSFNITKHVLVPKHTYIDKEQADVIINSFTAK 164
>gi|146083994|ref|XP_001464894.1| putative DNA-directed RNA polymerase II [Leishmania infantum JPCM5]
gi|134068989|emb|CAM67132.1| putative DNA-directed RNA polymerase II [Leishmania infantum JPCM5]
Length = 342
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKS-ENVFRAILVVQQNLTPFARTCIQE 116
KA +N + VFF K+ +K + ++ R K+ + + ++++V + P R +QE
Sbjct: 190 KAAKN----ALMVFFSGSPKLSIKEVHSF--REKALKKMASSMIIVTNKIDPGVRMDVQE 243
Query: 117 ISAK---------FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLL 156
+S + ++VF+E L N+ H VP H LT E + L
Sbjct: 244 LSGRMDEATGAELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFL 292
>gi|398013801|ref|XP_003860092.1| DNA-directed RNA polymerase II, putative [Leishmania donovani]
gi|322498311|emb|CBZ33385.1| DNA-directed RNA polymerase II, putative [Leishmania donovani]
Length = 342
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKS-ENVFRAILVVQQNLTPFARTCIQE 116
KA +N + VFF K+ +K + ++ R K+ + + ++++V + P R +QE
Sbjct: 190 KAAKN----ALMVFFSGSPKLSIKEVHSF--REKALKKMASSMIIVTNKIDPGVRMDVQE 243
Query: 117 ISAK---------FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLL 156
+S + ++VF+E L N+ H VP H LT E + L
Sbjct: 244 LSGRMDEATGAELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFL 292
>gi|401419206|ref|XP_003874093.1| putative DNA-directed RNA polymerase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490327|emb|CBZ25587.1| putative DNA-directed RNA polymerase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 342
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
KA +N + +FF K+ VK + ++ + + ++++V + P R +QE+
Sbjct: 190 KAAKN----ALMIFFSGSPKLSVKEVHSFREKALKKKA-SSMIIVANKIDPGVRMDVQEL 244
Query: 118 SAK---------FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLL 156
S + ++VF+E L N+ H VP H LT E + L
Sbjct: 245 SGRMDEATGAELLSIQVFEEEALAFNVVRHETVPGHVALTPAEAEAFL 292
>gi|315426561|dbj|BAJ48191.1| DNA-directed RNA polymerase subunit H [Candidatus Caldiarchaeum
subterraneum]
gi|343485293|dbj|BAJ50947.1| DNA-directed RNA polymerase subunit H [Candidatus Caldiarchaeum
subterraneum]
Length = 76
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 133 VNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
++I EHVLVP+H+VL+ EE + LL+RY V
Sbjct: 1 MDITEHVLVPKHEVLSPEEAEELLRRYGV 29
>gi|327409963|ref|YP_004347383.1| DNA-directed RNA polymerase subunit RPB5 [Lausannevirus]
gi|326785137|gb|AEA07271.1| DNA-directed RNA polymerase subunit RPB5 [Lausannevirus]
Length = 198
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 73/153 (47%), Gaps = 9/153 (5%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIY 69
++ R ++ V+ M+ DR + + + K + E+ +E ++ + D
Sbjct: 4 QIVRAKKAVVSMMTDREF------LPLKK---LPDPSESTSKECVIWDFVHEKDPEKFAR 54
Query: 70 VFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEA 129
VF+ + + ++ + +E + + +++V+ L A+T + I+ + VF+ +
Sbjct: 55 VFWSLGSESKMSFVQQVFSEAATEKLNQIVIIVEHPLVSKAKTTVNSITKIVNTCVFEIS 114
Query: 130 ELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVK 162
++ H LVP H+ L+ EEK+ +L+ Y VK
Sbjct: 115 DVQFRKPSHKLVPPHRRLSEEEKQKVLEDYQVK 147
>gi|157867863|ref|XP_001682485.1| putative DNA-directed RNA polymerase II [Leishmania major strain
Friedlin]
gi|68125939|emb|CAJ03745.1| putative DNA-directed RNA polymerase II [Leishmania major strain
Friedlin]
Length = 342
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
KA +N + VFF K+ +K + ++ + + +++VV + P R +QE+
Sbjct: 190 KAAKN----ALMVFFSGSPKLSMKEVHSFREKALKKKA-SSMIVVTNKIDPGVRMDVQEL 244
Query: 118 SAK---------FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLL 156
S + ++VF+E L N+ H VP H LT E + L
Sbjct: 245 SGRMDEATGAELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFL 292
>gi|154335547|ref|XP_001564012.1| putative DNA-directed RNA polymerase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061043|emb|CAM38062.1| putative DNA-directed RNA polymerase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 322
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK--- 120
+ + + VFF K+ +K ++ + + + V +++VV + P R +QE+S +
Sbjct: 172 AKNALMVFFSSSPKLSIKEVQAFREKALKKKV-SSMIVVTNKVDPGVRMDVQELSGRMDE 230
Query: 121 ------FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLL 156
++VF+E L N+ H VP H L+ E L
Sbjct: 231 ATGAELLSIQVFEEEALAFNVVRHETVPHHVALSPTEAAMFL 272
>gi|359481904|ref|XP_003632689.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II,
and III subunit RPABC1-like [Vitis vinifera]
Length = 207
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT+++MLRDRGY + +I++ QF + F + D +
Sbjct: 51 ESHRYYLARRTLLEMLRDRGYSIPALDIDI-YLQFXSVFHLFVSSSDYSLFXL------- 102
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRM-KSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
I V F V V +++ ++ +++ + ILV+Q ++T A + S F +E+
Sbjct: 103 HILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFS--FQVEM 160
Query: 126 FQ 127
FQ
Sbjct: 161 FQ 162
>gi|154335545|ref|XP_001564011.1| putative DNA-directed RNA polymerases II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061042|emb|CAM38061.1| putative DNA-directed RNA polymerases II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 239
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 70 VFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK---FHLEVF 126
V+F + + +K E R + V P R + + E+F
Sbjct: 100 VYFCPPNHLSSEVVKKIAEDALHEGYQRVVFVTPSKPNPIVRKTMDTYNRSEQDLRFELF 159
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+E EL VNI H LVP+H L+ EE K +L + ++ Q+
Sbjct: 160 EEDELSVNITHHELVPKHTPLSEEELKDVLHAHALELHQLP 200
>gi|219852747|ref|YP_002467179.1| DNA-directed RNA polymerase subunit H [Methanosphaerula palustris
E1-9c]
gi|219547006|gb|ACL17456.1| RNA polymerase Rpb5 [Methanosphaerula palustris E1-9c]
Length = 83
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 133 VNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+N+ +H++VP+HQ+++ EE K LL RY + Q+
Sbjct: 5 INVLDHLMVPDHQIMSEEEVKALLSRYKITYDQLP 39
>gi|357290920|gb|AET73520.1| hypothetical protein EMVG_00234 [Emiliania huxleyi virus PS401]
Length = 191
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 36/144 (25%)
Query: 21 MLRDRGYFVGD--------FEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFF 72
MLR RGY D E+ + E + G R L S + VFF
Sbjct: 15 MLRKRGYEEVDNYNPSNLEAEMKATLEPLLVALGRANTRPVL---------SQQEARVFF 65
Query: 73 -PDEQKVGVKTMK----TYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
+E ++ +KT++ T+ N + ILV TPFAR + ++VF+
Sbjct: 66 VTNEARISIKTIRCLQETHPNCL-------LILVSAGGATPFARK-------EDDVQVFE 111
Query: 128 EAELLVNIKEHVLVPEHQVLTNEE 151
+ L ++ H LVP H V+T E
Sbjct: 112 LSSLTHDVTTHSLVPRHTVMTQTE 135
>gi|342184880|emb|CCC94362.1| putative DNA-directed RNA polymerase II [Trypanosoma congolense
IL3000]
Length = 292
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 123 LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+++F+E EL NI H VP+H VLT E K L+ + + TQ+
Sbjct: 209 IQIFEEEELSYNITRHSSVPKHVVLTPCEAKEFLQNWKLTPTQL 252
>gi|167623817|ref|YP_001674111.1| radical SAM domain-containing protein [Shewanella halifaxensis
HAW-EB4]
gi|167353839|gb|ABZ76452.1| Radical SAM domain protein [Shewanella halifaxensis HAW-EB4]
Length = 414
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 93 ENVFRAILVVQQNLTPFAR-TCIQEISAKFHLEVFQEAELLVNIKEHVLVP--EHQVLTN 149
E V+R++L++Q++ PFA TCI SA++ LE++Q ++ + +P EH T
Sbjct: 152 EQVYRSVLLLQKHQVPFATLTCINNHSAQYALEIYQFLRDVLQSPQIQFIPIVEHSSFTA 211
Query: 150 EEKKTLL 156
E L
Sbjct: 212 ESSTQAL 218
>gi|340057895|emb|CCC52247.1| putative DNA-directed RNA polymerase II [Trypanosoma vivax Y486]
Length = 282
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
++ R + + VFF + + + ++ +R ++ I+VV + P R +E+
Sbjct: 127 RSSRGSKGNIMIVFF--SLSLTMAELYSFRDRALQKDARSMIVVVGSKIRPVLRRSAREL 184
Query: 118 SAKFH---------LEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+++F+E EL NI H VP H L++EE + L++ +K +Q+
Sbjct: 185 CGCLRAGTTEELLRVQLFEEDELSYNISRHQTVPRHVPLSSEEAQVFLQKRHLKISQL 242
>gi|70936236|ref|XP_739092.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56515823|emb|CAH87208.1| hypothetical protein PC302370.00.0 [Plasmodium chabaudi chabaudi]
Length = 69
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ + R ++ R+T +ML DRGY + E + F F EN K R + I + +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVF 71
+S++I V+
Sbjct: 62 ASNKIIVY 69
>gi|242082576|ref|XP_002441713.1| hypothetical protein SORBIDRAFT_08g001130 [Sorghum bicolor]
gi|241942406|gb|EES15551.1| hypothetical protein SORBIDRAFT_08g001130 [Sorghum bicolor]
Length = 274
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 132 LVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
LVNI +HVL P+H+VLT EEK L K Y V ++ +
Sbjct: 200 LVNITKHVLKPKHEVLTVEEKVKLQKDYNVVDSHLP 235
>gi|105923218|gb|ABF81464.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]
Length = 1617
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGV 80
M +DRGY V D E+ S +F + FG + L + +LR++ ++ V F ++
Sbjct: 1 MHKDRGYDVADTELTRSLMEFRSIFGNCPDLDSLRFSISLRSNPYNKNLVIFMGTDEIRT 60
Query: 81 KTMK-TYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQE 128
++ Y + E+ IL++Q + FA+ ++ F ++VFQ+
Sbjct: 61 ANIRAVYGQILSKESRQGLILILQSKMNHFAKKEPEKFP--FKVKVFQK 107
>gi|71748954|ref|XP_827816.1| DNA-directed RNA polymerase II [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833200|gb|EAN78704.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|84619250|emb|CAJ43705.1| RNA polymerase I subunit 1RPB5 [Trypanosoma brucei brucei]
gi|261333513|emb|CBH16508.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei
gambiense DAL972]
Length = 299
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 76 QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH---------LEVF 126
Q +GV + + N I+VV + R I+E H ++VF
Sbjct: 161 QSLGVDVLNNLREVAQRRNASSMIVVVGSKVR-GGRRSIREAGGGLHPGTTGQVIRIQVF 219
Query: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+E EL NI H VP+H +T+ E + L++ + TQ+
Sbjct: 220 EEDELAYNISRHQSVPKHVPMTDVEVRAFLEQRKLMITQL 259
>gi|401022|sp|P31815.1|RPOH_THECE RecName: Full=DNA-directed RNA polymerase subunit H
gi|809777|emb|CAA41801.1| DNA-dependent RNA polymerase (subunit H) [Thermococcus celer]
gi|809778|emb|CAA47721.1| Subunit H of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 82
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 134 NIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+I H LVPEH++L+ EE K LL+RY ++ +Q+
Sbjct: 8 DIFAHELVPEHRILSEEETKELLRRYRIQISQLP 41
>gi|407478575|ref|YP_006792452.1| aldo/keto reductase [Exiguobacterium antarcticum B7]
gi|407062654|gb|AFS71844.1| Aldo/keto reductase [Exiguobacterium antarcticum B7]
Length = 310
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 24/119 (20%)
Query: 30 GDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNR 89
GD +N S E +++KR LR D D Y+ FPDEQ + +
Sbjct: 94 GDVVMNNSPEFLKQAVEDSLKR--------LRTDYIDLYYIHFPDEQTPKDEAVAALA-E 144
Query: 90 MKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ----------EAELLVNIKEH 138
+K+E RAI ++ F+ ++E + H++V+Q E E+L I+EH
Sbjct: 145 LKAEGKIRAI-----GVSNFSLEQLKEANKDGHIDVYQGEYNLFKRDAEKEILPYIREH 198
>gi|118387602|ref|XP_001026905.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89308672|gb|EAS06660.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 275
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+ E+F +L++NI +H LVP+H L EKK L+ +Y + + Q+
Sbjct: 190 YKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQL 235
>gi|421733151|ref|ZP_16172265.1| aldo/keto reductase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|407072966|gb|EKE45965.1| aldo/keto reductase [Bacillus amyloliquefaciens subsp. plantarum
M27]
Length = 310
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 30 GDFEINMSKEQFIAKFGEN-MKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTN 88
G E++ S+E F+ EN +KR L+ D D YV FPD K + +
Sbjct: 94 GQIELDNSRE-FLRNEAENSLKR--------LKTDVIDLYYVHFPD-GKTPLSEVAGTLK 143
Query: 89 RMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ-EAELLVNIKEHVLVP 142
+K E RAI NL+ F + +QE +A +LEVFQ E L+ EH L+P
Sbjct: 144 ELKDEGKIRAIGA--SNLS-FGQ--LQEFNADGYLEVFQSEYSLIQREAEHDLLP 193
>gi|375360934|ref|YP_005128973.1| aldo/keto reductase [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|451348362|ref|YP_007446993.1| aldo/keto reductase [Bacillus amyloliquefaciens IT-45]
gi|371566928|emb|CCF03778.1| aldo/keto reductase [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|449852120|gb|AGF29112.1| aldo/keto reductase [Bacillus amyloliquefaciens IT-45]
Length = 310
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 30 GDFEINMSKEQFIAKFGEN-MKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTN 88
G E++ S+E F+ EN +KR L+ D D YV FPD K + +
Sbjct: 94 GQIELDNSRE-FLRNEAENSLKR--------LKTDVIDLYYVHFPD-GKTPLSEVAGTLK 143
Query: 89 RMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ-EAELLVNIKEHVLVP 142
+K E RAI NL+ F + +QE +A +LEVFQ E L+ EH L+P
Sbjct: 144 ELKDEGKIRAIGA--SNLS-FGQ--LQEFNADGYLEVFQSEYSLIQREAEHDLLP 193
>gi|432330440|ref|YP_007248583.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Methanoregula
formicicum SMSP]
gi|432137149|gb|AGB02076.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Methanoregula
formicicum SMSP]
Length = 83
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 133 VNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+N+ EHV+VP+HQ+++ +E LL RY + Q+
Sbjct: 5 LNVLEHVMVPDHQIMSEDEVSELLTRYNITTEQLP 39
>gi|365103171|ref|ZP_09333203.1| hypothetical protein HMPREF9428_04211 [Citrobacter freundii
4_7_47CFAA]
gi|363645510|gb|EHL84773.1| hypothetical protein HMPREF9428_04211 [Citrobacter freundii
4_7_47CFAA]
Length = 783
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 38 KEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97
+ ++ KF EN ++ ++ +L +S DQ + D + M T + + +R
Sbjct: 547 RSDWVVKFAENRSKDGNLLGYSLLQESVDQASYMYSDNHYLA--QMATLLGKHEEAQRYR 604
Query: 98 AILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVN 134
+ QNL + TC+ + KF +V E + L N
Sbjct: 605 QL---AQNLADYINTCMFDPETKFFYDVRIEEQPLAN 638
>gi|407846765|gb|EKG02756.1| DNA-directed RNA polymerase II, putative [Trypanosoma cruzi]
Length = 282
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 84/240 (35%), Gaps = 77/240 (32%)
Query: 4 SDEEIK--RLFRIRRTVMQMLRDRGY---------------FVGDFEINMSKEQFIAKF- 45
S EE+K RL+R T +QM DRGY V +E + + F+ +F
Sbjct: 3 SIEELKIVRLYRAYNTTIQMCMDRGYTVRHPSAVAQAVRDPCVYSYEHGLDYDWFLQRFV 62
Query: 46 -------GENMKRED-----------------------------LVINKALRNDSSDQ-- 67
G ED LV + L + D+
Sbjct: 63 TQRAAASGAERAEEDEDDKVRVPTNQNKLLEENKKHILMRGAMRLVCSAELDGATDDEEV 122
Query: 68 ------------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
+ VFF + + ++ + + ++V + P R +
Sbjct: 123 SLSKRGEKKGSLMLVFFSASPSLSMSELQECREKALLKEAHCMVVVSAGKIPPMVRRGAR 182
Query: 116 EISA---------KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
E+S +++ +E EL NI H VP+H+VL+ EE + L++ + +Q+
Sbjct: 183 ELSGFLRAGTGEEIMSIQLLEEDELAYNIARHDTVPQHEVLSPEEAQLFLQQRQISLSQL 242
>gi|7208597|gb|AAF40216.1|AF236666_1 RNA polymerase subunit [Emericella nidulans]
Length = 117
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMS----KEQFIAKFGENMKREDLVINKA 59
++ E R++R RTV +ML+DRGY V + E+ + K ++ K G R V N+
Sbjct: 22 AERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKREYAVKKGYPSARS--VKNQG 79
Query: 60 LRNDSSDQIYVFFPDEQKVGV 80
++ Y FP+ K G+
Sbjct: 80 RATEAMRGEYTPFPNPLKPGI 100
>gi|448579176|ref|ZP_21644453.1| DNA-directed RNA polymerase subunit H [Haloferax larsenii JCM
13917]
gi|448589491|ref|ZP_21649650.1| DNA-directed RNA polymerase subunit H [Haloferax elongans ATCC
BAA-1513]
gi|445723855|gb|ELZ75491.1| DNA-directed RNA polymerase subunit H [Haloferax larsenii JCM
13917]
gi|445735919|gb|ELZ87467.1| DNA-directed RNA polymerase subunit H [Haloferax elongans ATCC
BAA-1513]
Length = 75
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 27/36 (75%)
Query: 132 LVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+V++ +H LVPEH VL +EE +++L+ Y V++T +
Sbjct: 1 MVDVSQHKLVPEHTVLDDEEVESVLQEYNVEKTNLP 36
>gi|402840087|ref|ZP_10888556.1| hypothetical protein HMPREF1144_2602 [Klebsiella sp. OBRC7]
gi|402287037|gb|EJU35497.1| hypothetical protein HMPREF1144_2602 [Klebsiella sp. OBRC7]
Length = 782
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 38 KEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97
+ + KF EN + ++ +L +S DQ + D + M T + + +R
Sbjct: 547 RSDWTVKFAENRDKSGNLLGYSLLQESVDQASYMYSDNHYLA--EMATLLGKPEEAKRYR 604
Query: 98 AILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVN 134
A+ Q L + TC+ + +KF+ ++ EA+ L N
Sbjct: 605 AL---AQKLADYINTCMFDPQSKFYYDIRIEAQPLAN 638
>gi|397660070|ref|YP_006500772.1| isomerase [Klebsiella oxytoca E718]
gi|394348152|gb|AFN34273.1| Putative isomerase [Klebsiella oxytoca E718]
Length = 791
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 38 KEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97
+ + KF EN + ++ +L +S DQ + D + M T + + +R
Sbjct: 555 RSDWTVKFAENRDKSGNLLGYSLLQESVDQASYMYSDNHYLA--EMATLLGKPEEAKRYR 612
Query: 98 AILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVN 134
A+ Q L + TC+ + +KF+ ++ EA+ L N
Sbjct: 613 AL---AQKLADYINTCMFDPQSKFYYDIRIEAQPLAN 646
>gi|423104970|ref|ZP_17092672.1| hypothetical protein HMPREF9686_03576 [Klebsiella oxytoca 10-5242]
gi|376381736|gb|EHS94472.1| hypothetical protein HMPREF9686_03576 [Klebsiella oxytoca 10-5242]
Length = 782
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 38 KEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97
+ + KF EN + ++ +L +S DQ + D + M T + + +R
Sbjct: 547 RSDWTVKFAENRDKSGNLLGYSLLQESVDQASYMYSDNHYLA--EMATLLGKPEEAKRYR 604
Query: 98 AILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVN 134
A+ Q L + TC+ + +KF+ ++ EA+ L N
Sbjct: 605 AL---AQKLADYINTCMFDPQSKFYYDIRIEAQPLAN 638
>gi|375257460|ref|YP_005016630.1| alpha-glucosidase [Klebsiella oxytoca KCTC 1686]
gi|365906938|gb|AEX02391.1| alpha-glucosidase [Klebsiella oxytoca KCTC 1686]
Length = 791
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 38 KEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97
+ + KF EN + ++ +L +S DQ + D + M T + + +R
Sbjct: 555 RSDWTVKFAENRDKSGNLLGYSLLQESVDQASYMYSDNHYLA--EMATLLGKPEEAKRYR 612
Query: 98 AILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVN 134
A+ Q L + TC+ + +KF+ ++ EA+ L N
Sbjct: 613 AL---AQKLADYINTCMFDPQSKFYYDIRIEAQPLAN 646
>gi|71664578|ref|XP_819268.1| DNA-directed RNA polymerase II [Trypanosoma cruzi strain CL Brener]
gi|70884562|gb|EAN97417.1| DNA-directed RNA polymerase II, putative [Trypanosoma cruzi]
Length = 282
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 99 ILVVQQNLTPFARTCIQEISA---------KFHLEVFQEAELLVNIKEHVLVPEHQVLTN 149
++V + P R +E+S +++ +E EL NI H VP+H+VL+
Sbjct: 166 VVVSAGKIPPMVRRGARELSGFLRAGTGEEIMSIQLLEEDELAYNIARHETVPQHEVLSP 225
Query: 150 EEKKTLLKRYTVKETQV 166
EE + L++ + +Q+
Sbjct: 226 EEAQLFLQQRQISLSQL 242
>gi|71660311|ref|XP_821873.1| DNA-directed RNA polymerase II [Trypanosoma cruzi strain CL Brener]
gi|19718718|gb|AAL96366.1|AC116314_3 Tcc44h21-2.3 [Trypanosoma cruzi]
gi|70887262|gb|EAO00022.1| DNA-directed RNA polymerase II, putative [Trypanosoma cruzi]
Length = 282
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA-------- 119
+ VFF + + ++ + + + ++V + P R +E+
Sbjct: 135 MLVFFSASPSLSMSELQEFREKALLKEARCMVVVSAGKIPPMVRRGARELGGFLRAGTGE 194
Query: 120 -KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+++ +E EL NI H VP+H+VL+ EE + L++ + +Q+
Sbjct: 195 EIMSIQLLEEDELAYNIARHDTVPQHEVLSPEEARLFLQQRQISLSQL 242
>gi|389860839|ref|YP_006363079.1| DNA-directed RNA polymerase subunit H [Thermogladius cellulolyticus
1633]
gi|388525743|gb|AFK50941.1| DNA-directed RNA polymerase subunit H [Thermogladius cellulolyticus
1633]
Length = 91
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 133 VNIKEHVLVPEHQVLTNEEKKTLLKRYTV 161
+NI EHVLVP+H+VL+ EE +LK+ V
Sbjct: 7 INILEHVLVPKHEVLSPEEALEVLKKLGV 35
>gi|154151475|ref|YP_001405093.1| DNA-directed RNA polymerase subunit H [Methanoregula boonei 6A8]
gi|154000027|gb|ABS56450.1| RNA polymerase subunit, RPB5 [Methanoregula boonei 6A8]
Length = 83
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 133 VNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQV 166
+N+ HV+VP+HQ+++ EE LL RY + Q+
Sbjct: 5 LNVLSHVMVPDHQLMSEEEVSALLSRYHITTEQL 38
>gi|423125862|ref|ZP_17113541.1| hypothetical protein HMPREF9694_02553 [Klebsiella oxytoca 10-5250]
gi|376398437|gb|EHT11063.1| hypothetical protein HMPREF9694_02553 [Klebsiella oxytoca 10-5250]
Length = 783
Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 38 KEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97
+ + KF EN + ++ +L +S DQ + D + M T + + +R
Sbjct: 547 RSDWAVKFAENRGKNGSLLGYSLLQESVDQASYMYSDNHYLA--EMATLLGKPEEAKRYR 604
Query: 98 AILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVN 134
A+ Q L + TC+ + +KF+ ++ EA+ L N
Sbjct: 605 AL---AQKLADYINTCMFDPQSKFYYDIRIEAQPLAN 638
>gi|327401235|ref|YP_004342074.1| DNA-directed RNA polymerase subunit H [Archaeoglobus veneficus
SNP6]
gi|327316743|gb|AEA47359.1| DNA-directed RNA polymerase subunit H [Archaeoglobus veneficus
SNP6]
Length = 77
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 135 IKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
+++HVLVP+H+VL+ EE + LLK VK Q+
Sbjct: 6 LQDHVLVPKHEVLSKEEAEELLKTLGVKPEQLP 38
>gi|385263394|ref|ZP_10041481.1| Aldo/keto reductase family protein [Bacillus sp. 5B6]
gi|452854310|ref|YP_007495993.1| putative ion channel associated enzyme [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|385147890|gb|EIF11827.1| Aldo/keto reductase family protein [Bacillus sp. 5B6]
gi|452078570|emb|CCP20321.1| putative ion channel associated enzyme [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 310
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 30 GDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNR 89
G E++ S+E ++ ++KR L+ D D YV FPD K + +
Sbjct: 94 GQIELDNSREFLRSEAENSLKR--------LKTDVIDLYYVHFPD-GKTPLSEVAGTLKE 144
Query: 90 MKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ-EAELLVNIKEHVLVP 142
+K E RAI NL+ F + +QE +A +LEVFQ E L+ EH L+P
Sbjct: 145 LKDEGKIRAIGA--SNLS-FRQ--LQEFNADGYLEVFQSEYSLIQREAEHDLLP 193
>gi|394993010|ref|ZP_10385775.1| YccK [Bacillus sp. 916]
gi|429503781|ref|YP_007184965.1| myo-inositol catabolism protein [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|393806125|gb|EJD67479.1| YccK [Bacillus sp. 916]
gi|429485371|gb|AFZ89295.1| myo-inositol catabolism protein [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 310
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 30 GDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNR 89
G E++ S+E ++ ++KR L+ D D YV FPD K + +
Sbjct: 94 GQIELDNSREFLRSEAENSLKR--------LKTDVIDLYYVHFPD-GKTPLSEVAGTLKE 144
Query: 90 MKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ-EAELLVNIKEHVLVP 142
+K E RAI NL+ F + +QE +A +LEVFQ E L+ EH L+P
Sbjct: 145 LKDEGKIRAIGA--SNLS-FRQ--LQEFNADGYLEVFQSEYSLIQREAEHDLLP 193
>gi|384263876|ref|YP_005419583.1| aldo/keto reductase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|387896770|ref|YP_006327066.1| myo-inositol catabolism protein [Bacillus amyloliquefaciens Y2]
gi|380497229|emb|CCG48267.1| aldo/keto reductase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|387170880|gb|AFJ60341.1| myo-inositol catabolism protein [Bacillus amyloliquefaciens Y2]
Length = 310
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 30 GDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNR 89
G E++ S+E ++ ++KR L+ D D YV FPD K + +
Sbjct: 94 GQIELDNSREFLRSEAENSLKR--------LKTDVIDLYYVHFPD-GKTPLSEVAGTLKE 144
Query: 90 MKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ-EAELLVNIKEHVLVP 142
+K E RAI NL+ F + +QE +A +LEVFQ E L+ EH L+P
Sbjct: 145 LKDEGKIRAIGA--SNLS-FRQ--LQEFNADGYLEVFQSEYSLIQREAEHDLLP 193
>gi|154684772|ref|YP_001419933.1| hypothetical protein RBAM_003030 [Bacillus amyloliquefaciens FZB42]
gi|154350623|gb|ABS72702.1| YccK [Bacillus amyloliquefaciens FZB42]
Length = 310
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 30 GDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNR 89
G E++ S+E ++ ++KR L+ D D YV FPD K + +
Sbjct: 94 GQIELDNSREFLRSEAENSLKR--------LKTDVIDLYYVHFPD-GKTPLSEVAGTLKE 144
Query: 90 MKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ-EAELLVNIKEHVLVP 142
+K E RAI NL+ F + +QE +A +LEVFQ E L+ EH L+P
Sbjct: 145 LKDEGKIRAIGA--SNLS-FRQ--LQEFNADGYLEVFQSEYSLIQREAEHDLLP 193
>gi|297616212|ref|YP_003710351.1| DNA-directed RNA polymerase subunit H [Methanocella arvoryzae
MRE50]
Length = 79
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 134 NIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVS 167
N+ EH LVPEH +L+ EE +LK+Y + + Q+
Sbjct: 6 NVLEHELVPEHILLSEEEAAEVLKKYNISKGQLP 39
>gi|116874179|ref|YP_850960.1| glycosyl transferase family protein [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116743057|emb|CAK22181.1| glycosyl transferase, family 65 [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 725
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 15/149 (10%)
Query: 20 QMLRDRGYFVGDFEINMSKEQFIAKFGENMKRE--DLVINKAL-RNDSSDQIYVFFPDEQ 76
++ D Y V ++E+ S QF+ ++G + E + I++A RN + + V PDE
Sbjct: 398 HLVADIAYAVCEYEVATSDAQFMVEYGAELLLETAEFWISRATSRNGRLEILDVIGPDEY 457
Query: 77 KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIK 136
+ TYTN M NV +A+ ++N AR ++F E L
Sbjct: 458 TEHIDN-NTYTNYMAHYNVKKALEWNKENTDFEARA-----------KIFLENLYLPVAN 505
Query: 137 EHVLVPEHQVLTNEEKKTLLKRYTVKETQ 165
E L+P+ ++ L K + TQ
Sbjct: 506 ESGLIPQDDTFLQKDWINLDKYKAAQGTQ 534
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,231,526,386
Number of Sequences: 23463169
Number of extensions: 79754754
Number of successful extensions: 228333
Number of sequences better than 100.0: 570
Number of HSP's better than 100.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 227282
Number of HSP's gapped (non-prelim): 598
length of query: 170
length of database: 8,064,228,071
effective HSP length: 130
effective length of query: 40
effective length of database: 9,308,983,397
effective search space: 372359335880
effective search space used: 372359335880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)