Query 030833
Match_columns 170
No_of_seqs 135 out of 340
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 07:57:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_E DNA-directed RNA polyme 100.0 1.8E-63 6.2E-68 409.8 8.1 170 1-170 1-174 (210)
2 1dzf_A DNA-directed RNA polyme 100.0 6.5E-62 2.2E-66 401.6 9.7 167 3-170 4-179 (215)
3 1eik_A RNA polymerase subunit 99.7 5.9E-18 2E-22 119.4 3.5 40 131-170 1-40 (77)
4 1hmj_A RPB5, protein (subunit 99.6 6.4E-17 2.2E-21 114.4 2.0 38 133-170 1-38 (78)
5 4ayb_H DNA-directed RNA polyme 99.6 1.4E-16 4.8E-21 114.2 2.5 43 128-170 4-46 (84)
6 2yxb_A Coenzyme B12-dependent 72.3 5.5 0.00019 30.1 4.9 77 17-110 37-113 (161)
7 1y88_A Hypothetical protein AF 69.6 9.4 0.00032 30.5 5.9 66 89-158 88-159 (199)
8 2jmk_A Hypothetical protein TA 58.6 48 0.0016 23.8 7.2 58 38-97 46-107 (111)
9 3ezx_A MMCP 1, monomethylamine 58.4 23 0.00078 27.9 6.2 79 17-110 111-191 (215)
10 4f0q_A Restriction endonucleas 54.3 9.2 0.00032 34.4 3.5 55 73-131 360-414 (456)
11 1y80_A Predicted cobalamin bin 40.0 67 0.0023 24.5 6.1 76 16-108 106-183 (210)
12 3s5p_A Ribose 5-phosphate isom 32.7 23 0.00078 27.6 2.3 58 12-106 33-90 (166)
13 1wd5_A Hypothetical protein TT 31.6 1.7E+02 0.0058 22.2 8.0 78 74-157 127-204 (208)
14 1ccw_A Protein (glutamate muta 30.3 20 0.0007 26.0 1.6 72 17-105 22-93 (137)
15 2i2x_B MTAC, methyltransferase 28.6 50 0.0017 26.5 3.7 75 17-108 142-216 (258)
16 3he8_A Ribose-5-phosphate isom 25.9 94 0.0032 23.6 4.6 20 12-31 12-31 (149)
17 2vld_A NUCS, UPF0286 protein p 25.2 1.2E+02 0.004 24.9 5.4 58 66-128 169-230 (251)
18 3ph3_A Ribose-5-phosphate isom 25.1 96 0.0033 24.1 4.6 20 12-31 32-51 (169)
19 2hl7_A Cytochrome C-type bioge 24.4 52 0.0018 22.7 2.7 31 14-50 48-78 (84)
20 1o1x_A Ribose-5-phosphate isom 23.8 1.1E+02 0.0036 23.5 4.6 58 12-106 24-81 (155)
21 2kw0_A CCMH protein; oxidoredu 22.5 72 0.0024 22.3 3.1 31 14-50 45-75 (90)
22 3l9k_W Dynein intermediate cha 22.5 40 0.0014 20.1 1.5 11 147-157 1-11 (38)
23 2vvp_A Ribose-5-phosphate isom 22.4 1.4E+02 0.0047 22.9 5.0 20 12-31 15-34 (162)
24 4gxt_A A conserved functionall 21.2 3.7E+02 0.013 22.6 8.4 122 35-160 173-306 (385)
No 1
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-63 Score=409.80 Aligned_cols=170 Identities=36% Similarity=0.603 Sum_probs=163.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcCCCCCCChhhhccCHHHHHHHhcCC---CCCcceEEEeecCCCC-CCcEEEEeCCCC
Q 030833 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---MKREDLVINKALRNDS-SDQIYVFFPDEQ 76 (170)
Q Consensus 1 m~~~~~e~~rl~r~rrTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~---~~r~~L~~~~~~~~dp-~~~i~VfF~~~~ 76 (170)
|+++++|++||||+|||++|||+||||.|+++|+++|+++|+++||++ ++|++|+|++++.+|| +++|+|||++++
T Consensus 1 m~~~~~e~~rl~rirrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~~~~~r~~l~~~~~~~~dp~~~~i~VfF~~~~ 80 (210)
T 3h0g_E 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEP 80 (210)
T ss_dssp ---CTHHHHHHHGGGSSSSSTTTTTTEECCTTTTSCCHHHHHHHSCCSSSSCCCSSCCCEEEESSCSSCCCEEEECCCSS
T ss_pred CCcchHHHHHHHHHHHHHHHHhcCCCCccCHHHHhCCHHHHHHHhcccCCCCCchheEEEEEcCCCCccCeEEEEECCCC
Confidence 788889999999999999999999999999999999999999999987 5699999999999999 999999999999
Q ss_pred ccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhcccccceeeeeccccccccccccccccccccCHHHHHHHH
Q 030833 77 KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLL 156 (170)
Q Consensus 77 ~vgvk~Ir~~~~~~~~e~~~~~IiV~q~~lt~~Ar~~~~~~~~~~~iE~F~e~ELl~ni~~H~lVP~h~~l~~eE~~~ll 156 (170)
+||+|+||.|+++|.++|+++||||+|+++||+|++++.+++++++||+|+|+||+||||+|+|||+|++||+||+++||
T Consensus 81 ~vgvk~Ir~~~~~~~~en~~~~IiV~q~~~t~~A~~~l~~~~~~~~iE~F~e~eLlvnit~H~lVPkH~~ls~eE~~~lL 160 (210)
T 3h0g_E 81 SVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELL 160 (210)
T ss_dssp SCCTTTTGGGTHHHHHTTCSEEEECCSSCCCSHHHHTTTTTCTTCEECCCCSSSSCSCTTSBTTBCCEECCCHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHcCCceEEEEECCCCCHHHHHHHHHhCcCcEEEEEeehHeeEecccccccCcEEEcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCC
Q 030833 157 KRYTVKETQVSDKF 170 (170)
Q Consensus 157 ~~y~~~~~qlP~~~ 170 (170)
++|+++++|||+|.
T Consensus 161 ~~y~i~~~qLP~I~ 174 (210)
T 3h0g_E 161 DRYKLRETQLPRIQ 174 (210)
T ss_dssp HHTCCCTTTSCCCC
T ss_pred HHcCCCHHHCCccc
Confidence 99999999999984
No 2
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=100.00 E-value=6.5e-62 Score=401.61 Aligned_cols=167 Identities=39% Similarity=0.608 Sum_probs=161.2
Q ss_pred CcHHHHHHHHHHHHHHHHHhcCCCCCCChhhhccCHHHHHHHhcC---CCCCcceEEEeecCCCCCCcE------EEEeC
Q 030833 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE---NMKREDLVINKALRNDSSDQI------YVFFP 73 (170)
Q Consensus 3 ~~~~e~~rl~r~rrTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~---~~~r~~L~~~~~~~~dp~~~i------~VfF~ 73 (170)
+++.++.||||+|||++|||+||||.|+++|+++|+++|+++||+ .++|++|+|++++++||++++ +||||
T Consensus 4 ~~~~e~~rl~r~rrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~g~p~r~~L~~~~~~~~d~~~k~~~~~~~~VfF~ 83 (215)
T 1dzf_A 4 ENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFC 83 (215)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTTBCCCHHHHTCCHHHHHHHHBCTTSCBCGGGTCEEECBCHHHHHHCTTCCCEEEEEC
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccCHhHhcCCHHHHHHHHccccCCCchhheEEEecCCCChhhhhccCCceEEEec
Confidence 467899999999999999999999999999999999999999998 567999999999999999998 99999
Q ss_pred CCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhcccccceeeeeccccccccccccccccccccCHHHHH
Q 030833 74 DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKK 153 (170)
Q Consensus 74 ~~~~vgvk~Ir~~~~~~~~e~~~~~IiV~q~~lt~~Ar~~~~~~~~~~~iE~F~e~ELl~ni~~H~lVP~h~~l~~eE~~ 153 (170)
++++||+|+||+|+++|+++|+++||||+|+++||+|++++.++++ ++||+|+|+||+||||+|+|||+|++||+|||+
T Consensus 84 ~~~~vgvk~ir~~~~~~~~e~~~~~IlV~q~~itp~Ak~~l~~~~~-~~iE~F~e~eL~vni~~H~lVP~H~~l~~eE~~ 162 (215)
T 1dzf_A 84 DEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPP-ATIETFNEAALVVNITHHELVPKHIRLSSDEKR 162 (215)
T ss_dssp SSSEECHHHHHHHHHHHHHTTCSEEEEEESSEECHHHHTTTTSSTT-CEEEEEEHHHHSSCGGGSTTSCEEEECCHHHHH
T ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEECCCCChHHHHHHHHhcC-ceEEEeehHHheeccccceeccceEEccHHHHH
Confidence 9999999999999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCC
Q 030833 154 TLLKRYTVKETQVSDKF 170 (170)
Q Consensus 154 ~ll~~y~~~~~qlP~~~ 170 (170)
+||++|+++++|||+|.
T Consensus 163 ~lL~~y~i~~~qLP~I~ 179 (215)
T 1dzf_A 163 ELLKRYRLKESQLPRIQ 179 (215)
T ss_dssp HHHHHTTCCGGGSCEEC
T ss_pred HHHHHcCCCHHHCCcee
Confidence 99999999999999984
No 3
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=99.70 E-value=5.9e-18 Score=119.45 Aligned_cols=40 Identities=33% Similarity=0.457 Sum_probs=38.7
Q ss_pred cccccccccccccccccCHHHHHHHHhhcCCCCCCCCCCC
Q 030833 131 LLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVSDKF 170 (170)
Q Consensus 131 Ll~ni~~H~lVP~h~~l~~eE~~~ll~~y~~~~~qlP~~~ 170 (170)
|+||||+|+|||+|++||+|||++||++|+++++|||+|.
T Consensus 1 l~vnIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLP~I~ 40 (77)
T 1eik_A 1 MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIK 40 (77)
T ss_dssp CCCCCCSSSSCCEEEEECHHHHHHHHHHTTCCTTTSCCCB
T ss_pred CcccCccceecCCEEEcCHHHHHHHHHHcCCCHHHCCeee
Confidence 7899999999999999999999999999999999999984
No 4
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=99.62 E-value=6.4e-17 Score=114.39 Aligned_cols=38 Identities=34% Similarity=0.778 Sum_probs=36.9
Q ss_pred cccccccccccccccCHHHHHHHHhhcCCCCCCCCCCC
Q 030833 133 VNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVSDKF 170 (170)
Q Consensus 133 ~ni~~H~lVP~h~~l~~eE~~~ll~~y~~~~~qlP~~~ 170 (170)
||||+|+|||+|++||+|||++||++|+++++|||+|.
T Consensus 1 vnIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLPrI~ 38 (78)
T 1hmj_A 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIY 38 (78)
T ss_pred CCccceeeCCCeEECCHHHHHHHHHHcCCCHHHCCeee
Confidence 79999999999999999999999999999999999984
No 5
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=99.61 E-value=1.4e-16 Score=114.16 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=37.9
Q ss_pred ccccccccccccccccccccCHHHHHHHHhhcCCCCCCCCCCC
Q 030833 128 EAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQVSDKF 170 (170)
Q Consensus 128 e~ELl~ni~~H~lVP~h~~l~~eE~~~ll~~y~~~~~qlP~~~ 170 (170)
.++++||||+|+|||+|++||+||+++||++|+++++|||+|.
T Consensus 4 ~~~~~~Ni~~H~LVPkH~vLs~eE~~~ll~~y~i~~~qLP~I~ 46 (84)
T 4ayb_H 4 SSNRKIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIR 46 (84)
T ss_dssp ----CCCCSSSSSCCEEEECCHHHHHHHHHHHTCCGGGSCCEE
T ss_pred cccceecccccccCCCeEECCHHHHHHHHHHhcCCHhHCCeec
Confidence 4679999999999999999999999999999999999999973
No 6
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=72.35 E-value=5.5 Score=30.10 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=51.3
Q ss_pred HHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHhhcCCC
Q 030833 17 TVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVF 96 (170)
Q Consensus 17 Tv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~e~~~ 96 (170)
-+.-||++.||.|..--.+.+.++|.+..... +.+-+.+++ .. .-.+..++.+++.+.+.+..
T Consensus 37 ~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~-~~diV~lS~--------------~~--~~~~~~~~~~i~~L~~~g~~ 99 (161)
T 2yxb_A 37 VVARALRDAGFEVVYTGLRQTPEQVAMAAVQE-DVDVIGVSI--------------LN--GAHLHLMKRLMAKLRELGAD 99 (161)
T ss_dssp HHHHHHHHTTCEEECCCSBCCHHHHHHHHHHT-TCSEEEEEE--------------SS--SCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc-CCCEEEEEe--------------ec--hhhHHHHHHHHHHHHhcCCC
Confidence 35568999999999877788999998865322 112222222 21 24678889999999888875
Q ss_pred eEEEEEcCCCCHHH
Q 030833 97 RAILVVQQNLTPFA 110 (170)
Q Consensus 97 ~~IiV~q~~lt~~A 110 (170)
...+++.+.+.+..
T Consensus 100 ~i~v~vGG~~~~~~ 113 (161)
T 2yxb_A 100 DIPVVLGGTIPIPD 113 (161)
T ss_dssp TSCEEEEECCCHHH
T ss_pred CCEEEEeCCCchhc
Confidence 45556666665543
No 7
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=69.57 E-value=9.4 Score=30.46 Aligned_cols=66 Identities=9% Similarity=0.154 Sum_probs=47.1
Q ss_pred HHhhcCCCeEEEEEcCCCCHHHHHHHHhcccccceeee-----eccccccccccccccc-cccccCHHHHHHHHhh
Q 030833 89 RMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF-----QEAELLVNIKEHVLVP-EHQVLTNEEKKTLLKR 158 (170)
Q Consensus 89 ~~~~e~~~~~IiV~q~~lt~~Ar~~~~~~~~~~~iE~F-----~e~ELl~ni~~H~lVP-~h~~l~~eE~~~ll~~ 158 (170)
.+...+..+|++|+-+..|+.|++..... .|++. ...+|.--|.+..|=| ----||++|+.+||++
T Consensus 88 d~~~~~a~~g~VVTn~~FT~~A~~~A~~~----~I~Li~wd~p~g~~L~~~i~~~~l~pi~~l~~~~~e~~~l~~~ 159 (199)
T 1y88_A 88 DVEKHGFTQPWIFTNTKFSEEAKKYAGCV----GIKLTGWSYPEKEGIEVLLESKGLYPITILRIDKEVLDELVRA 159 (199)
T ss_dssp HHGGGTCSEEEEECSSEECHHHHHHHHHH----TCEEECSSCSTTTSHHHHHHTTTCCBGGGSSCCHHHHHHHHHT
T ss_pred hhhccCCCEEEEEECCCCCHHHHHHHHHC----CcEEEECCCCchHHHHHHHHHcCCCCeEEEeeCHHHHhhhhcC
Confidence 34556899999999999999998866543 45554 2355555566666766 1227899999999874
No 8
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=58.62 E-value=48 Score=23.83 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCC----CCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHhhcCCCe
Q 030833 38 KEQFIAKFGENM----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97 (170)
Q Consensus 38 ~~~F~~~~~~~~----~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~e~~~~ 97 (170)
+.+|.++|.--. .-...-|.+-++ ..+-+-|-|++......+.|+.+++..++.|++.
T Consensus 46 l~dFIsryARTDEImPEDKTvGFvviN~--dKK~mSvsFsd~~~~~K~~i~ei~kkykd~Gykv 107 (111)
T 2jmk_A 46 MMDFISRFARTDEIMPEDKTVGFVVVNA--DKKLMSVSFSDIDENMKKVIKATAEKFKNKGFKV 107 (111)
T ss_dssp HHHHHHHHCCCSCCCSSCEEEEEEEEET--TTTEEEEEECSCCTTHHHHHHHHHHHGGGGCCEE
T ss_pred HHHHHHHhhcccccCCCCceeEEEEEec--CCeEEEEEeehhhhhHHHHHHHHHHHhhcCCcee
Confidence 789999997442 233455555433 2345889999998899999999999998888763
No 9
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=58.42 E-value=23 Score=27.87 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=52.1
Q ss_pred HHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHhhcCC-
Q 030833 17 TVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENV- 95 (170)
Q Consensus 17 Tv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~e~~- 95 (170)
-+.-||+++||.|-.--.+.+.++|.+.-... +| +-|.+-|+.-..-.+..++.+++.+.+.+.
T Consensus 111 iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~--------------~~-d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~ 175 (215)
T 3ezx_A 111 LVTTMLGANGFQIVDLGVDVLNENVVEEAAKH--------------KG-EKVLLVGSALMTTSMLGQKDLMDRLNEEKLR 175 (215)
T ss_dssp HHHHHHHHTSCEEEECCSSCCHHHHHHHHHHT--------------TT-SCEEEEEECSSHHHHTHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHc--------------CC-CEEEEEchhcccCcHHHHHHHHHHHHHcCCC
Confidence 35678999999998766678899997754222 11 123332233333466778999999999988
Q ss_pred -CeEEEEEcCCCCHHH
Q 030833 96 -FRAILVVQQNLTPFA 110 (170)
Q Consensus 96 -~~~IiV~q~~lt~~A 110 (170)
+--|+|-....|+..
T Consensus 176 ~~v~v~vGG~~~~~~~ 191 (215)
T 3ezx_A 176 DSVKCMFGGAPVSDKW 191 (215)
T ss_dssp GGSEEEEESSSCCHHH
T ss_pred CCCEEEEECCCCCHHH
Confidence 445666666677543
No 10
>4f0q_A Restriction endonuclease; cytosine methylation-dependent endonuclease, hydrolase; 2.05A {Mycobacterium SP} PDB: 4f0p_A
Probab=54.26 E-value=9.2 Score=34.35 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=42.3
Q ss_pred CCCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhcccccceeeeecccc
Q 030833 73 PDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAEL 131 (170)
Q Consensus 73 ~~~~~vgvk~Ir~~~~~~~~e~~~~~IiV~q~~lt~~Ar~~~~~~~~~~~iE~F~e~EL 131 (170)
..+..||.+.|+.|+..| .+...||+|+-+..|..|++.+..-. ..|.++.=.+|
T Consensus 360 ~~~~~Vg~~~I~~f~g~l--~~~~~GifITTS~Ft~~A~~ea~~d~--~pI~LIdG~~L 414 (456)
T 4f0q_A 360 QPTSSVSPEQVARVVARL--RRGWIGVYVTTGSFSRQAQVEIIDDQ--YPVVLIAGGTL 414 (456)
T ss_dssp CTTSEECHHHHHHHHTTC--CTTEEEEEEESSEECHHHHHHHHHTT--CCEEEECHHHH
T ss_pred cCCCCCCHHHHHHHHHhh--cCCCeEEEEECCcCCHHHHHHHHcCC--CcEEEEcHHHH
Confidence 445679999999999888 45689999999999999988766533 46776644443
No 11
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=39.99 E-value=67 Score=24.49 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=48.0
Q ss_pred HHHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHhhcCC
Q 030833 16 RTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENV 95 (170)
Q Consensus 16 rTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~e~~ 95 (170)
+-+..||+.+||.|..--.+.+.++|.+.-... +.+-+.+++ . ..-....++.+++.+.+.+.
T Consensus 106 ~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~-~~d~v~lS~--------------~--~~~~~~~~~~~i~~l~~~~~ 168 (210)
T 1y80_A 106 NLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKY-QPDIVGMSA--------------L--LTTTMMNMKSTIDALIAAGL 168 (210)
T ss_dssp HHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHH-CCSEEEEEC--------------C--SGGGTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-CCCEEEEec--------------c--ccccHHHHHHHHHHHHhcCC
Confidence 346678999999998766678889998754221 112222222 1 12357789999999988886
Q ss_pred C--eEEEEEcCCCCH
Q 030833 96 F--RAILVVQQNLTP 108 (170)
Q Consensus 96 ~--~~IiV~q~~lt~ 108 (170)
. --|+|-....++
T Consensus 169 ~~~~~v~vGG~~~~~ 183 (210)
T 1y80_A 169 RDRVKVIVGGAPLSQ 183 (210)
T ss_dssp GGGCEEEEESTTCCH
T ss_pred CCCCeEEEECCCCCH
Confidence 4 335554444554
No 12
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=32.74 E-value=23 Score=27.63 Aligned_cols=58 Identities=28% Similarity=0.313 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHh
Q 030833 12 FRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMK 91 (170)
Q Consensus 12 ~r~rrTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~ 91 (170)
|.....+.+.|+++||.|.+ ||... .++ |-||+ ++ ...++.+.
T Consensus 33 ~~lK~~i~~~L~~~G~eV~D-------------~G~~~------------~~~-----~dYPd---~a----~~va~~V~ 75 (166)
T 3s5p_A 33 RDLRMFLQQRASAHGYEVMD-------------LGTES------------DAS-----VDYPD---FA----KIGCEAVT 75 (166)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-------------EEC-------------------------CH---HH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEE-------------cCCCC------------CCC-----CCHHH---HH----HHHHHHHH
Confidence 45567888889899998877 33221 111 11332 22 44556666
Q ss_pred hcCCCeEEEEEcCCC
Q 030833 92 SENVFRAILVVQQNL 106 (170)
Q Consensus 92 ~e~~~~~IiV~q~~l 106 (170)
+....+||+|+..++
T Consensus 76 ~g~~d~GIliCGTGi 90 (166)
T 3s5p_A 76 SGRADCCILVCGTGI 90 (166)
T ss_dssp TTSCSEEEEEESSSH
T ss_pred cCCCcEEEEEcCCcH
Confidence 778899999998885
No 13
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=31.62 E-value=1.7e+02 Score=22.18 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=48.9
Q ss_pred CCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhcccccceeeeeccccccccccccccccccccCHHHHH
Q 030833 74 DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKK 153 (170)
Q Consensus 74 ~~~~vgvk~Ir~~~~~~~~e~~~~~IiV~q~~lt~~Ar~~~~~~~~~~~iE~F~e~ELl~ni~~H~lVP~h~~l~~eE~~ 153 (170)
++---+=.|++..++.+.+.|..+..+.+ .-..+.+.+.+.... . +-.|.-.+-.+.+-. .-.+.+.+|++|..
T Consensus 127 DDvi~TG~Tl~~a~~~L~~~ga~~V~v~~-~v~~~~~~~~l~~~~-~--~v~~~~~~~f~~v~~--~y~~~~~~~~~ev~ 200 (208)
T 1wd5_A 127 DDGVATGASMEAALSVVFQEGPRRVVVAV-PVASPEAVERLKARA-E--VVALSVPQDFAAVGA--YYLDFGEVTDEDVE 200 (208)
T ss_dssp CSCBSSCHHHHHHHHHHHTTCCSEEEEEE-EEBCHHHHHHHHTTS-E--EEEEECCTTCCCGGG--GBSCCCCCCHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHcCCCEEEEEE-EEcCHHHHHHhcccC-c--EEEEecCcchhhHHH--HhcCCCCCCHHHHH
Confidence 44334667889999999988988776665 223466666666554 2 222332222233333 23466799999999
Q ss_pred HHHh
Q 030833 154 TLLK 157 (170)
Q Consensus 154 ~ll~ 157 (170)
.+|+
T Consensus 201 ~~l~ 204 (208)
T 1wd5_A 201 AILL 204 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9998
No 14
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=30.26 E-value=20 Score=25.98 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=45.8
Q ss_pred HHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHhhcCCC
Q 030833 17 TVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVF 96 (170)
Q Consensus 17 Tv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~e~~~ 96 (170)
-+.-|+++.||.|..--.+.+.++|.+..-+. +.+-+.+++ .. .-....++.+++.+.+.+..
T Consensus 22 ~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~-~~d~v~lS~--------------~~--~~~~~~~~~~i~~l~~~g~~ 84 (137)
T 1ccw_A 22 ILDHAFTNAGFNVVNIGVLSPQELFIKAAIET-KADAILVSS--------------LY--GQGEIDCKGLRQKCDEAGLE 84 (137)
T ss_dssp HHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH-TCSEEEEEE--------------CS--STHHHHHTTHHHHHHHTTCT
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc-CCCEEEEEe--------------cC--cCcHHHHHHHHHHHHhcCCC
Confidence 35578999999998766688999998865322 111222222 22 23456678888888888875
Q ss_pred eEEEEEcCC
Q 030833 97 RAILVVQQN 105 (170)
Q Consensus 97 ~~IiV~q~~ 105 (170)
...+++.+.
T Consensus 85 ~i~v~vGG~ 93 (137)
T 1ccw_A 85 GILLYVGGN 93 (137)
T ss_dssp TCEEEEEES
T ss_pred CCEEEEECC
Confidence 444444454
No 15
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=28.60 E-value=50 Score=26.45 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=46.8
Q ss_pred HHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHhhcCCC
Q 030833 17 TVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVF 96 (170)
Q Consensus 17 Tv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~e~~~ 96 (170)
-+..||+++||.|..--.+.+.++|.+.-... +.+-+.+++ .. .-.+..++.+++.+.+.+..
T Consensus 142 iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~-~~d~V~lS~--------------l~--~~~~~~~~~~i~~l~~~~~~ 204 (258)
T 2i2x_B 142 IVTALLRANGYNVVDLGRDVPAEEVLAAVQKE-KPIMLTGTA--------------LM--TTTMYAFKEVNDMLLENGIK 204 (258)
T ss_dssp HHHHHHHHTTCEEEEEEEECCSHHHHHHHHHH-CCSEEEEEC--------------CC--TTTTTHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-CCCEEEEEe--------------ec--cCCHHHHHHHHHHHHhcCCC
Confidence 45678899999997755567888887653221 112222222 11 23466889999999988887
Q ss_pred eEEEEEcCCCCH
Q 030833 97 RAILVVQQNLTP 108 (170)
Q Consensus 97 ~~IiV~q~~lt~ 108 (170)
--|+|-....++
T Consensus 205 ~~v~vGG~~~~~ 216 (258)
T 2i2x_B 205 IPFACGGGAVNQ 216 (258)
T ss_dssp CCEEEESTTCCH
T ss_pred CcEEEECccCCH
Confidence 445554444554
No 16
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=25.85 E-value=94 Score=23.57 Aligned_cols=20 Identities=35% Similarity=0.773 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCCCCCCh
Q 030833 12 FRIRRTVMQMLRDRGYFVGD 31 (170)
Q Consensus 12 ~r~rrTv~eMl~DRGY~v~~ 31 (170)
|.....+.+.|+++||.|.+
T Consensus 12 ~~lK~~i~~~L~~~G~eV~D 31 (149)
T 3he8_A 12 YNLKREIADFLKKRGYEVID 31 (149)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 44567888899999998876
No 17
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=25.21 E-value=1.2e+02 Score=24.93 Aligned_cols=58 Identities=26% Similarity=0.310 Sum_probs=37.2
Q ss_pred CcEEEEeCCC--CccchhHHHHHHHHHhhc--CCCeEEEEEcCCCCHHHHHHHHhcccccceeeeec
Q 030833 66 DQIYVFFPDE--QKVGVKTMKTYTNRMKSE--NVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQE 128 (170)
Q Consensus 66 ~~i~VfF~~~--~~vgvk~Ir~~~~~~~~e--~~~~~IiV~q~~lt~~Ar~~~~~~~~~~~iE~F~e 128 (170)
.-++|..--. ..=.+.++..|++.+..+ +-.+||+|. +..++.|+.++.+ ..||++..
T Consensus 169 ~~VvIElKr~~~~~e~V~QL~~Yl~~l~~~~~~~vrGIlvA-~s~s~~ar~~l~d----~gIe~v~l 230 (251)
T 2vld_A 169 NIVVLELKRRKADLHAVSQMKRYVDSLKEEYGENVRGILVA-PSLTEGAKKLLEK----EGLEFRKL 230 (251)
T ss_dssp CEEEEEECSSCBCHHHHHHHHHHHHHHHHHHCSCEEEEEEE-SCBCHHHHHHHHH----HTCEEEEC
T ss_pred CEEEEEEeeccCCHhHHHHHHHHHHHHHhccCCCeEEEEEe-CCCCHHHHHHHHH----cCcEEEEe
Confidence 3455665442 223455666677777654 557888887 4568999998775 35777654
No 18
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=25.10 E-value=96 Score=24.09 Aligned_cols=20 Identities=35% Similarity=0.773 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCCCCCCh
Q 030833 12 FRIRRTVMQMLRDRGYFVGD 31 (170)
Q Consensus 12 ~r~rrTv~eMl~DRGY~v~~ 31 (170)
|.....+.+.|.++||.|.+
T Consensus 32 ~~lK~~i~~~L~~~G~eV~D 51 (169)
T 3ph3_A 32 YNLKREIADFLKKRGYEVID 51 (169)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 44567888888888988876
No 19
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=24.38 E-value=52 Score=22.70 Aligned_cols=31 Identities=26% Similarity=0.583 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCC
Q 030833 14 IRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK 50 (170)
Q Consensus 14 ~rrTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~ 50 (170)
-|+-|.+|+.+ |. +++|+ ++.|.++||+-..
T Consensus 48 lR~~V~~~l~~-G~--sd~eI---~~~~v~RYG~fVl 78 (84)
T 2hl7_A 48 LRKQIYGQLQQ-GK--SDGEI---VDYMVARYGDFVR 78 (84)
T ss_dssp HHHHHHHHHHH-TC--CHHHH---HHHHHHHHTTTCE
T ss_pred HHHHHHHHHHc-CC--CHHHH---HHHHHHhcCCeee
Confidence 46778899974 54 57777 7899999998754
No 20
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=23.75 E-value=1.1e+02 Score=23.47 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHh
Q 030833 12 FRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMK 91 (170)
Q Consensus 12 ~r~rrTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~ 91 (170)
|..+..+.+.|...||.|.+ ||.... ++ |-||+ + -...++.+.
T Consensus 24 ~~lK~~i~~~L~~~G~eV~D-------------~G~~~~------------~~-----~dYpd---~----a~~va~~V~ 66 (155)
T 1o1x_A 24 FELKEKVKNYLLGKGIEVED-------------HGTYSE------------ES-----VDYPD---Y----AKKVVQSIL 66 (155)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-------------CCCCSS------------SC-----CCHHH---H----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEE-------------eCCCCC------------CC-----CChHH---H----HHHHHHHHH
Confidence 45567888889999998877 343210 11 01321 1 234555566
Q ss_pred hcCCCeEEEEEcCCC
Q 030833 92 SENVFRAILVVQQNL 106 (170)
Q Consensus 92 ~e~~~~~IiV~q~~l 106 (170)
+....+||+|+..++
T Consensus 67 ~g~~d~GIliCGTGi 81 (155)
T 1o1x_A 67 SNEADFGILLCGTGL 81 (155)
T ss_dssp TTSCSEEEEEESSSH
T ss_pred cCCCceEEEEcCCcH
Confidence 777889999998875
No 21
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=22.51 E-value=72 Score=22.33 Aligned_cols=31 Identities=23% Similarity=0.579 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCCCCChhhhccCHHHHHHHhcCCCC
Q 030833 14 IRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK 50 (170)
Q Consensus 14 ~rrTv~eMl~DRGY~v~~~e~~~s~~~F~~~~~~~~~ 50 (170)
-|+-|.+|+.+ |. +++++ ++.|.++||+-..
T Consensus 45 lR~~Vre~l~~-G~--Sd~eI---~~~mv~RYGdfVl 75 (90)
T 2kw0_A 45 LRQKVYELMQE-GK--SKKEI---VDYMVARYGNFVT 75 (90)
T ss_dssp HHHHHHHHHHH-TC--CHHHH---HHHHHHHHTTTCB
T ss_pred HHHHHHHHHHc-CC--CHHHH---HHHHHHhcCCeEE
Confidence 46778899975 54 57777 7899999998754
No 22
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=22.47 E-value=40 Score=20.05 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=9.1
Q ss_pred cCHHHHHHHHh
Q 030833 147 LTNEEKKTLLK 157 (170)
Q Consensus 147 l~~eE~~~ll~ 157 (170)
||+|||++++.
T Consensus 1 LseEEk~~I~~ 11 (38)
T 3l9k_W 1 LSEEQKQMIIL 11 (38)
T ss_dssp CCHHHHHHHHT
T ss_pred CCHHHHHHHhc
Confidence 78999998875
No 23
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=22.39 E-value=1.4e+02 Score=22.94 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCCCCCCh
Q 030833 12 FRIRRTVMQMLRDRGYFVGD 31 (170)
Q Consensus 12 ~r~rrTv~eMl~DRGY~v~~ 31 (170)
|..++.+.+.|.++||.|.+
T Consensus 15 ~~lK~~i~~~L~~~G~eV~D 34 (162)
T 2vvp_A 15 YELKQRIIEHLKQTGHEPID 34 (162)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 45567788999999998877
No 24
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=21.18 E-value=3.7e+02 Score=22.62 Aligned_cols=122 Identities=8% Similarity=0.109 Sum_probs=67.6
Q ss_pred ccCHHHHHHHhc------CCCCCcceEEEeecCCCCCCcEEEEeCCCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCH
Q 030833 35 NMSKEQFIAKFG------ENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTP 108 (170)
Q Consensus 35 ~~s~~~F~~~~~------~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~e~~~~~IiV~q~~lt~ 108 (170)
+||.++|.+.-. ..+.-............+.+.+.+.|.....+ ...+++++..+.+.|+. .. |+-++...
T Consensus 173 GmT~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~gir~-~p~~~eLi~~L~~~G~~-v~-IVSgg~~~ 249 (385)
T 4gxt_A 173 NYKTEEVYDLCKGAYASMKKERIRVEEFVSPDIKSEAGRISIKYFVGIRT-LDEMVDLYRSLEENGID-CY-IVSASFID 249 (385)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSCCEEEEEECCSSCCSSCCCEEEEEECCEE-CHHHHHHHHHHHHTTCE-EE-EEEEEEHH
T ss_pred CCCHHHHHHHHHHHHHhccccccCceeeecccccccCceeEEeeccCcee-CHHHHHHHHHHHHCCCe-EE-EEcCCcHH
Confidence 688888876421 12222222333222333445666666554433 46788999999999987 33 34466667
Q ss_pred HHHHHHHhcccccce---eeeeccccccc---cccccccccccccCHHHHHHHHhhcC
Q 030833 109 FARTCIQEISAKFHL---EVFQEAELLVN---IKEHVLVPEHQVLTNEEKKTLLKRYT 160 (170)
Q Consensus 109 ~Ar~~~~~~~~~~~i---E~F~e~ELl~n---i~~H~lVP~h~~l~~eE~~~ll~~y~ 160 (170)
.++.....+.-.|.| .++ =.+|.++ ..-..+.+..++...+.|.+.+++|-
T Consensus 250 ~v~~ia~~lg~~y~ip~~~Vi-g~~l~~~~dG~~tg~~~~~~p~~~~~gK~~~i~~~~ 306 (385)
T 4gxt_A 250 IVRAFATDTNNNYKMKEEKVL-GLRLMKDDEGKILPKFDKDFPISIREGKVQTINKLI 306 (385)
T ss_dssp HHHHHHHCTTSSCCCCGGGEE-EECEEECTTCCEEEEECTTSCCCSTHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcceEE-EeEEEEecCCceeeeecCccceeCCCchHHHHHHHH
Confidence 776665554311222 122 1333332 22234455556677888999998873
Done!