Query 030836
Match_columns 170
No_of_seqs 163 out of 1032
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 08:02:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nu0_A Hypothetical protein YQ 100.0 2.4E-34 8.2E-39 223.5 10.1 105 62-169 2-109 (138)
2 1iv0_A Hypothetical protein; r 100.0 3.5E-32 1.2E-36 200.5 9.5 94 64-161 2-98 (98)
3 1vhx_A Putative holliday junct 100.0 3.7E-29 1.3E-33 196.2 12.6 104 63-169 3-111 (150)
4 4ep4_A Crossover junction endo 98.5 1.5E-06 5.2E-11 68.9 11.5 89 63-154 1-105 (166)
5 1hjr_A Holliday junction resol 97.9 0.00031 1.1E-08 55.0 13.0 89 63-154 1-101 (158)
6 3bzc_A TEX; helix-turn-helix, 97.8 0.00011 3.9E-09 70.2 11.5 93 62-162 328-427 (785)
7 3psf_A Transcription elongatio 97.1 0.0042 1.4E-07 61.0 12.6 92 63-160 519-626 (1030)
8 3psi_A Transcription elongatio 97.0 0.0048 1.6E-07 61.6 11.6 88 63-160 516-623 (1219)
9 3epq_A Putative fructokinase; 94.9 0.088 3E-06 43.8 7.8 101 63-167 3-117 (302)
10 3vov_A Glucokinase, hexokinase 94.8 0.11 3.8E-06 42.9 8.1 99 64-166 2-117 (302)
11 2ch5_A NAGK protein; transfera 94.4 0.42 1.4E-05 39.5 10.8 95 60-160 3-114 (347)
12 3vgl_A Glucokinase; ROK family 93.9 0.059 2E-06 44.8 4.7 100 63-166 2-115 (321)
13 2hoe_A N-acetylglucosamine kin 93.4 0.21 7.2E-06 42.5 7.4 101 62-166 86-207 (380)
14 1saz_A Probable butyrate kinas 93.3 1.3 4.5E-05 37.9 12.3 90 64-158 3-131 (381)
15 2ap1_A Putative regulator prot 92.2 0.3 1E-05 40.3 6.6 98 63-164 24-137 (327)
16 2qm1_A Glucokinase; alpha-beta 92.2 0.37 1.3E-05 39.3 7.0 101 63-166 6-127 (326)
17 3djc_A Type III pantothenate k 92.1 1.3 4.3E-05 36.8 10.2 56 64-119 3-66 (266)
18 3r8e_A Hypothetical sugar kina 92.1 1.2 4.2E-05 36.7 10.1 105 59-166 15-137 (321)
19 2gup_A ROK family protein; sug 91.4 0.35 1.2E-05 39.1 6.0 94 64-164 5-111 (292)
20 3htv_A D-allose kinase, alloki 91.2 0.77 2.6E-05 38.1 8.0 95 62-159 6-119 (310)
21 2e2o_A Hexokinase; acetate and 91.0 0.97 3.3E-05 36.6 8.2 91 64-164 3-103 (299)
22 1z6r_A MLC protein; transcript 90.7 0.83 2.8E-05 38.9 7.9 102 61-166 83-205 (406)
23 3mcp_A Glucokinase; structural 90.4 0.74 2.5E-05 39.7 7.4 100 62-165 8-126 (366)
24 3r6m_A YEAZ, resuscitation pro 90.3 2.6 9.1E-05 33.9 10.2 91 63-164 2-99 (213)
25 1z05_A Transcriptional regulat 90.2 0.4 1.4E-05 41.5 5.5 100 61-166 106-227 (429)
26 2gel_A Putative GRAM negative 89.7 5.7 0.0002 31.8 11.8 84 64-155 2-93 (231)
27 4db3_A Glcnac kinase, N-acetyl 89.3 1.9 6.5E-05 35.8 8.8 98 64-165 25-138 (327)
28 4htl_A Beta-glucoside kinase; 89.2 1.7 5.9E-05 35.5 8.4 100 63-166 4-116 (297)
29 2aa4_A Mannac kinase, putative 89.2 1.2 4.2E-05 35.7 7.4 98 64-165 2-114 (289)
30 1zbs_A Hypothetical protein PG 88.3 2.9 0.0001 33.9 9.1 81 65-156 2-97 (291)
31 1woq_A Inorganic polyphosphate 88.3 1.4 4.9E-05 35.3 7.2 100 63-166 12-133 (267)
32 2ivn_A O-sialoglycoprotein end 87.2 5 0.00017 33.6 10.2 86 64-157 2-108 (330)
33 2yhw_A Bifunctional UDP-N-acet 86.9 0.42 1.4E-05 39.8 3.3 99 63-165 30-149 (343)
34 3h1q_A Ethanolamine utilizatio 86.4 7.4 0.00025 30.6 10.4 84 62-155 27-126 (272)
35 2a6a_A Hypothetical protein TM 85.5 13 0.00043 29.8 12.7 90 63-164 12-109 (218)
36 2h3g_X Biosynthetic protein; p 85.2 8.9 0.0003 31.6 10.6 80 64-155 1-89 (268)
37 3eno_A Putative O-sialoglycopr 84.8 11 0.00038 31.7 11.2 88 61-155 4-111 (334)
38 3lm2_A Putative kinase; struct 83.5 1.9 6.7E-05 34.7 5.7 56 63-121 6-65 (226)
39 1sz2_A Glucokinase, glucose ki 82.5 6 0.0002 32.7 8.5 96 62-164 13-119 (332)
40 3bex_A Type III pantothenate k 77.8 12 0.0004 30.4 8.5 57 63-119 3-65 (249)
41 3en9_A Glycoprotease, O-sialog 77.8 19 0.00066 31.9 10.7 87 62-155 5-110 (540)
42 1jmv_A USPA, universal stress 74.5 9.7 0.00033 26.4 6.4 51 96-156 88-138 (141)
43 4gni_A Putative heat shock pro 74.0 2 6.9E-05 36.3 3.1 20 62-81 12-31 (409)
44 2q2r_A Glucokinase 1, putative 73.7 9 0.00031 32.1 7.1 99 62-163 28-144 (373)
45 1zxo_A Conserved hypothetical 72.3 5.3 0.00018 32.4 5.1 83 65-157 2-96 (291)
46 1tq8_A Hypothetical protein RV 72.1 8 0.00027 28.3 5.7 54 96-156 105-158 (163)
47 1yuw_A Heat shock cognate 71 k 71.9 2.2 7.4E-05 38.4 2.9 21 61-81 2-22 (554)
48 2gm3_A Unknown protein; AT3G01 71.3 8.7 0.0003 27.9 5.7 55 96-157 110-164 (175)
49 3i33_A Heat shock-related 70 k 70.8 2.1 7.3E-05 35.9 2.5 20 62-81 22-41 (404)
50 1mjh_A Protein (ATP-binding do 69.7 6.2 0.00021 28.2 4.5 55 96-157 106-160 (162)
51 1dkg_D Molecular chaperone DNA 68.8 2.1 7.1E-05 35.7 1.9 18 64-81 3-20 (383)
52 3qfu_A 78 kDa glucose-regulate 68.5 2.9 9.8E-05 34.8 2.8 19 63-81 18-36 (394)
53 3tnj_A Universal stress protei 68.3 6.2 0.00021 27.7 4.2 52 96-155 95-146 (150)
54 2yhx_A Hexokinase B; transfera 68.0 13 0.00044 33.0 7.0 37 37-81 43-79 (457)
55 2f9w_A Pantothenate kinase; CO 68.0 29 0.00099 28.7 8.8 51 62-117 22-76 (271)
56 2z08_A Universal stress protei 67.3 5.8 0.0002 27.6 3.8 52 96-154 85-136 (137)
57 2ych_A Competence protein PILM 66.8 31 0.0011 28.3 8.8 58 63-120 13-85 (377)
58 3cet_A Conserved archaeal prot 66.7 25 0.00086 30.3 8.4 86 64-155 1-91 (334)
59 2dum_A Hypothetical protein PH 66.6 7.5 0.00026 28.0 4.5 55 96-157 103-157 (170)
60 4b9q_A Chaperone protein DNAK; 62.8 4.9 0.00017 36.5 3.3 19 63-81 2-20 (605)
61 3mdq_A Exopolyphosphatase; str 62.5 36 0.0012 28.2 8.5 83 63-155 4-110 (315)
62 1zc6_A Probable N-acetylglucos 61.5 27 0.00093 28.1 7.3 20 63-82 11-30 (305)
63 3s3t_A Nucleotide-binding prot 61.2 8.5 0.00029 26.8 3.7 51 97-154 94-145 (146)
64 3fdx_A Putative filament prote 60.5 8.5 0.00029 26.7 3.6 51 96-154 92-142 (143)
65 2qxy_A Response regulator; reg 60.4 22 0.00076 24.1 5.8 56 100-166 38-93 (142)
66 3hgm_A Universal stress protei 60.3 6.5 0.00022 27.4 3.0 24 96-119 96-119 (147)
67 3fg9_A Protein of universal st 60.2 5.7 0.0002 28.3 2.7 51 96-154 104-155 (156)
68 4e7p_A Response regulator; DNA 59.8 39 0.0013 23.2 7.3 58 100-167 56-113 (150)
69 1t6c_A Exopolyphosphatase; alp 58.8 50 0.0017 27.4 8.7 82 64-155 13-118 (315)
70 3hv2_A Response regulator/HD d 58.7 42 0.0014 23.2 8.3 58 100-167 48-105 (153)
71 4ehu_A Activator of 2-hydroxyi 57.7 24 0.00083 27.8 6.3 20 63-82 1-20 (276)
72 3qze_A DHDPS, dihydrodipicolin 55.6 31 0.0011 28.8 6.9 96 66-168 9-112 (314)
73 2kho_A Heat shock protein 70; 55.2 6 0.00021 35.9 2.5 19 63-81 2-20 (605)
74 2v7y_A Chaperone protein DNAK; 55.1 7.8 0.00027 34.2 3.2 18 64-81 3-20 (509)
75 3dlo_A Universal stress protei 55.0 7.8 0.00027 28.1 2.7 24 96-119 103-126 (155)
76 3ifr_A Carbohydrate kinase, FG 54.8 65 0.0022 28.3 9.2 20 63-82 7-26 (508)
77 3hdg_A Uncharacterized protein 54.0 46 0.0016 22.2 7.3 58 100-167 41-98 (137)
78 3eul_A Possible nitrate/nitrit 54.0 50 0.0017 22.6 7.9 58 100-167 51-108 (152)
79 3g0t_A Putative aminotransfera 52.6 42 0.0014 27.5 7.1 56 98-159 170-225 (437)
80 3b2n_A Uncharacterized protein 52.2 50 0.0017 22.1 7.7 57 101-167 40-96 (133)
81 3gi1_A LBP, laminin-binding pr 52.2 35 0.0012 27.9 6.6 38 126-167 210-247 (286)
82 2prs_A High-affinity zinc upta 51.6 27 0.00091 28.4 5.7 38 126-167 205-242 (284)
83 2qr3_A Two-component system re 51.2 36 0.0012 22.8 5.6 59 100-166 37-98 (140)
84 1q77_A Hypothetical protein AQ 50.4 14 0.00047 25.5 3.3 43 96-154 95-137 (138)
85 3f6c_A Positive transcription 49.8 42 0.0014 22.3 5.7 51 104-164 40-90 (134)
86 3i8b_A Xylulose kinase; strain 49.6 1.1E+02 0.0038 26.9 9.9 56 63-118 5-72 (515)
87 3hzh_A Chemotaxis response reg 49.3 63 0.0022 22.4 7.5 57 101-167 72-130 (157)
88 3mfq_A TROA, high-affinity zin 49.2 36 0.0012 27.8 6.2 37 126-166 194-230 (282)
89 3cz5_A Two-component response 49.2 61 0.0021 22.2 7.8 58 100-167 41-98 (153)
90 3cx3_A Lipoprotein; zinc-bindi 49.2 34 0.0012 27.8 6.0 38 126-167 208-245 (284)
91 1u6z_A Exopolyphosphatase; alp 48.9 30 0.001 30.9 6.0 84 62-155 10-117 (513)
92 3kht_A Response regulator; PSI 48.9 49 0.0017 22.4 6.1 58 100-167 41-100 (144)
93 2rjn_A Response regulator rece 48.5 63 0.0022 22.2 7.6 58 100-167 41-98 (154)
94 3hi0_A Putative exopolyphospha 48.5 72 0.0025 28.3 8.5 83 63-155 15-121 (508)
95 3dzz_A Putative pyridoxal 5'-p 48.3 29 0.001 27.8 5.4 55 99-159 149-203 (391)
96 3cer_A Possible exopolyphospha 47.6 46 0.0016 28.1 6.8 84 63-155 16-123 (343)
97 3eod_A Protein HNR; response r 47.6 58 0.002 21.5 7.5 58 100-167 41-98 (130)
98 1toa_A Tromp-1, protein (perip 47.5 42 0.0014 27.9 6.4 38 126-167 228-265 (313)
99 3kax_A Aminotransferase, class 46.6 58 0.002 25.9 6.9 54 99-159 146-199 (383)
100 3nra_A Aspartate aminotransfer 46.2 69 0.0023 25.8 7.4 54 99-159 169-222 (407)
101 3loq_A Universal stress protei 46.1 62 0.0021 25.3 7.0 54 96-156 237-290 (294)
102 2ekc_A AQ_1548, tryptophan syn 46.1 97 0.0033 24.8 8.3 54 99-154 33-100 (262)
103 3g25_A Glycerol kinase; IDP007 46.0 83 0.0028 27.4 8.4 20 63-82 6-25 (501)
104 4a2a_A Cell division protein F 45.3 92 0.0032 26.8 8.5 59 63-121 8-86 (419)
105 3ll3_A Gluconate kinase; xylul 45.1 56 0.0019 28.6 7.1 21 62-82 3-23 (504)
106 3l8a_A METC, putative aminotra 45.0 48 0.0016 27.3 6.4 56 98-159 182-237 (421)
107 1qkk_A DCTD, C4-dicarboxylate 45.0 62 0.0021 22.2 6.2 57 101-167 38-94 (155)
108 3kki_A CAI-1 autoinducer synth 44.7 65 0.0022 26.2 7.1 52 99-159 175-226 (409)
109 2o1e_A YCDH; alpha-beta protei 44.5 33 0.0011 28.5 5.3 39 126-168 221-259 (312)
110 1kcf_A Hypothetical 30.2 KD pr 44.5 14 0.00049 30.5 3.0 61 64-124 41-124 (258)
111 3f9t_A TDC, L-tyrosine decarbo 44.4 85 0.0029 24.8 7.6 52 99-159 160-211 (397)
112 3vzx_A Heptaprenylglyceryl pho 44.3 29 0.00098 28.2 4.7 39 106-154 27-65 (228)
113 3d2f_A Heat shock protein homo 44.3 12 0.00041 34.6 2.7 18 64-81 3-20 (675)
114 2qsj_A DNA-binding response re 44.1 73 0.0025 21.7 6.4 56 100-165 39-95 (154)
115 3cg0_A Response regulator rece 43.8 69 0.0024 21.3 6.9 57 101-167 45-101 (140)
116 1d2f_A MALY protein; aminotran 43.8 38 0.0013 27.3 5.5 55 99-159 151-205 (390)
117 3nkl_A UDP-D-quinovosamine 4-d 43.6 30 0.001 24.2 4.3 45 100-155 55-99 (141)
118 1o13_A Probable NIFB protein; 43.4 57 0.0019 23.8 5.9 51 101-169 67-117 (136)
119 1hux_A Activator of (R)-2-hydr 42.9 94 0.0032 24.8 7.7 20 63-82 3-22 (270)
120 3jte_A Response regulator rece 42.7 74 0.0025 21.3 7.9 50 108-167 47-96 (143)
121 1qop_A Tryptophan synthase alp 42.6 42 0.0014 27.0 5.5 54 99-154 33-100 (268)
122 2bdq_A Copper homeostasis prot 42.5 74 0.0025 25.9 6.9 56 105-169 84-144 (224)
123 2yx6_A Hypothetical protein PH 41.9 66 0.0023 22.4 5.9 51 101-169 54-104 (121)
124 2ioy_A Periplasmic sugar-bindi 41.9 76 0.0026 24.4 6.8 43 100-156 48-90 (283)
125 3hh8_A Metal ABC transporter s 41.9 53 0.0018 27.0 6.1 33 128-164 216-248 (294)
126 2zyj_A Alpha-aminodipate amino 41.4 63 0.0021 26.2 6.5 56 99-160 151-207 (397)
127 3piu_A 1-aminocyclopropane-1-c 41.3 65 0.0022 26.6 6.6 56 99-160 175-235 (435)
128 2zay_A Response regulator rece 41.2 80 0.0027 21.3 7.5 58 100-167 42-101 (147)
129 4e1j_A Glycerol kinase; struct 41.1 55 0.0019 28.9 6.5 21 62-82 25-45 (520)
130 1srr_A SPO0F, sporulation resp 40.8 74 0.0025 20.7 7.9 54 102-165 39-92 (124)
131 3olq_A Universal stress protei 40.7 59 0.002 25.6 6.1 52 97-155 253-304 (319)
132 4dad_A Putative pilus assembly 40.2 46 0.0016 22.6 4.8 58 100-167 56-114 (146)
133 3mt0_A Uncharacterized protein 40.2 44 0.0015 26.2 5.2 24 96-119 75-98 (290)
134 2gkg_A Response regulator homo 40.2 65 0.0022 20.8 5.4 56 101-164 40-95 (127)
135 1b5f_B Protein (cardosin A); h 39.8 24 0.00081 23.4 3.0 17 64-80 70-86 (87)
136 3cnb_A DNA-binding response re 39.7 81 0.0028 20.9 7.9 58 100-167 44-103 (143)
137 3w01_A Heptaprenylglyceryl pho 39.6 48 0.0017 27.0 5.4 44 100-154 27-70 (235)
138 1eo1_A Hypothetical protein MT 39.6 95 0.0033 21.7 7.4 51 101-169 56-106 (124)
139 3ksm_A ABC-type sugar transpor 39.4 99 0.0034 23.2 7.0 45 100-157 49-93 (276)
140 3cq5_A Histidinol-phosphate am 39.3 91 0.0031 24.9 7.1 52 99-159 153-204 (369)
141 3l6u_A ABC-type sugar transpor 39.3 1.2E+02 0.0041 23.0 7.6 44 101-158 56-99 (293)
142 3rot_A ABC sugar transporter, 38.8 1.2E+02 0.0041 23.4 7.5 44 101-158 53-96 (297)
143 3a2b_A Serine palmitoyltransfe 38.7 75 0.0026 25.6 6.5 52 99-159 159-213 (398)
144 1ivn_A Thioesterase I; hydrola 38.0 97 0.0033 22.2 6.5 22 100-121 52-73 (190)
145 1twd_A Copper homeostasis prot 37.9 86 0.0029 26.0 6.7 56 105-169 81-139 (256)
146 3gv0_A Transcriptional regulat 37.8 73 0.0025 24.5 6.1 45 99-158 55-99 (288)
147 2jk1_A HUPR, hydrogenase trans 37.8 90 0.0031 20.9 6.6 54 101-164 35-88 (139)
148 2dpn_A Glycerol kinase; thermu 37.6 1E+02 0.0034 26.8 7.5 19 64-82 3-21 (495)
149 1dbw_A Transcriptional regulat 37.6 85 0.0029 20.5 7.0 57 101-167 38-94 (126)
150 1xvl_A Mn transporter, MNTC pr 37.5 57 0.0019 27.2 5.7 38 126-167 235-272 (321)
151 3jy6_A Transcriptional regulat 37.4 92 0.0031 23.7 6.6 43 100-158 53-95 (276)
152 3fdb_A Beta C-S lyase, putativ 37.2 97 0.0033 24.5 6.9 55 99-160 140-194 (377)
153 1pq4_A Periplasmic binding pro 37.1 56 0.0019 26.7 5.5 37 126-166 219-255 (291)
154 1tmy_A CHEY protein, TMY; chem 36.7 84 0.0029 20.2 7.1 56 102-167 39-94 (120)
155 1uf3_A Hypothetical protein TT 36.7 75 0.0025 23.3 5.8 49 99-154 21-69 (228)
156 3g1w_A Sugar ABC transporter; 36.6 1.2E+02 0.004 23.3 7.2 44 101-158 53-96 (305)
157 1c7n_A Cystalysin; transferase 36.2 58 0.002 26.2 5.4 55 99-159 153-207 (399)
158 1iay_A ACC synthase 2, 1-amino 36.1 82 0.0028 25.8 6.4 56 99-160 172-232 (428)
159 2yvt_A Hypothetical protein AQ 36.1 88 0.003 23.7 6.2 19 99-117 21-39 (260)
160 3thx_A DNA mismatch repair pro 35.7 1.8E+02 0.0061 28.2 9.5 53 63-117 145-202 (934)
161 2d4w_A Glycerol kinase; alpha 35.5 84 0.0029 27.4 6.7 19 64-82 3-21 (504)
162 3kcn_A Adenylate cyclase homol 35.5 1E+02 0.0036 20.9 8.1 57 101-167 38-95 (151)
163 3euc_A Histidinol-phosphate am 35.4 75 0.0026 25.2 5.9 55 99-159 146-202 (367)
164 2w8t_A SPT, serine palmitoyltr 35.3 50 0.0017 27.4 5.0 53 99-160 180-235 (427)
165 3flu_A DHDPS, dihydrodipicolin 35.2 1.7E+02 0.0057 23.9 8.2 64 98-168 29-96 (297)
166 3tb6_A Arabinose metabolism tr 34.8 66 0.0023 24.5 5.3 47 101-158 62-109 (298)
167 3cfy_A Putative LUXO repressor 34.8 1E+02 0.0036 20.7 7.3 57 101-167 39-95 (137)
168 3mt0_A Uncharacterized protein 34.7 36 0.0012 26.7 3.8 52 97-155 224-275 (290)
169 2uyt_A Rhamnulokinase; rhamnos 34.7 27 0.00092 30.3 3.3 21 61-81 2-22 (489)
170 3qk7_A Transcriptional regulat 34.6 93 0.0032 24.1 6.3 43 100-157 55-97 (294)
171 3crn_A Response regulator rece 34.4 1E+02 0.0035 20.5 7.5 57 101-167 38-94 (132)
172 3lyh_A Cobalamin (vitamin B12) 34.1 1.2E+02 0.004 21.1 6.6 48 113-167 8-57 (126)
173 2wfb_A Putative uncharacterize 33.9 80 0.0027 22.0 5.3 53 100-169 57-109 (120)
174 2r6a_A DNAB helicase, replicat 33.8 69 0.0024 27.5 5.8 58 99-156 302-362 (454)
175 2q6t_A DNAB replication FORK h 33.7 81 0.0028 27.0 6.2 59 98-156 298-361 (444)
176 2xws_A Sirohydrochlorin cobalt 33.7 83 0.0029 21.9 5.4 46 113-163 6-54 (133)
177 3loq_A Universal stress protei 33.3 75 0.0026 24.8 5.5 52 97-158 112-164 (294)
178 2xdq_A Light-independent proto 33.0 88 0.003 26.9 6.3 53 96-155 83-135 (460)
179 1jce_A ROD shape-determining p 32.5 25 0.00084 28.7 2.6 18 64-81 4-21 (344)
180 3i42_A Response regulator rece 32.5 1E+02 0.0036 20.0 5.5 49 100-156 37-85 (127)
181 2yrr_A Aminotransferase, class 32.4 97 0.0033 24.0 6.0 52 99-159 113-164 (353)
182 3rqi_A Response regulator prot 32.4 1.1E+02 0.0037 22.0 6.0 57 101-167 42-98 (184)
183 4h08_A Putative hydrolase; GDS 32.2 1.4E+02 0.0049 21.5 6.9 55 98-154 62-117 (200)
184 3gl9_A Response regulator; bet 32.2 1.1E+02 0.0037 20.1 7.2 59 101-167 37-95 (122)
185 3ujp_A Mn transporter subunit; 32.1 62 0.0021 26.9 5.1 37 126-166 221-257 (307)
186 2pl1_A Transcriptional regulat 32.0 1E+02 0.0035 19.8 8.1 57 101-167 35-91 (121)
187 2f6u_A GGGPS, (S)-3-O-geranylg 31.7 73 0.0025 25.7 5.3 41 103-153 26-66 (234)
188 3olq_A Universal stress protei 31.2 49 0.0017 26.0 4.1 25 96-120 97-121 (319)
189 3cpe_A Terminase, DNA packagin 31.1 2.2E+02 0.0076 25.3 8.8 58 60-117 417-483 (592)
190 2itm_A Xylulose kinase, xylulo 31.0 1.4E+02 0.0049 25.7 7.4 18 65-82 2-19 (484)
191 2p3r_A Glycerol kinase; glycer 30.7 1.3E+02 0.0043 26.4 7.1 20 63-82 3-22 (510)
192 1q57_A DNA primase/helicase; d 30.6 1.2E+02 0.004 26.3 6.7 58 98-155 342-401 (503)
193 3l49_A ABC sugar (ribose) tran 30.6 1.4E+02 0.0048 22.6 6.6 43 102-157 53-95 (291)
194 2bwn_A 5-aminolevulinate synth 30.3 1.4E+02 0.0047 24.0 6.8 52 99-159 164-218 (401)
195 1viz_A PCRB protein homolog; s 30.3 80 0.0027 25.5 5.3 41 103-153 26-66 (240)
196 2yxb_A Coenzyme B12-dependent 30.3 1.4E+02 0.0048 22.1 6.4 61 86-153 45-105 (161)
197 2zf5_O Glycerol kinase; hypert 30.2 1.7E+02 0.0058 25.3 7.7 20 63-82 3-22 (497)
198 3n0l_A Serine hydroxymethyltra 29.9 1.5E+02 0.005 23.8 6.9 50 99-159 153-202 (417)
199 3t6k_A Response regulator rece 29.7 1.3E+02 0.0044 20.2 8.2 59 101-167 39-97 (136)
200 3k4h_A Putative transcriptiona 29.6 1.1E+02 0.0036 23.4 5.7 44 100-158 59-102 (292)
201 3i16_A Aluminum resistance pro 29.5 80 0.0027 27.2 5.5 55 99-160 164-223 (427)
202 2l69_A Rossmann 2X3 fold prote 29.4 62 0.0021 23.6 4.0 51 96-157 36-86 (134)
203 3o74_A Fructose transport syst 28.9 1.5E+02 0.0051 22.2 6.4 45 101-159 49-93 (272)
204 3ftb_A Histidinol-phosphate am 28.7 1.2E+02 0.0042 23.7 6.1 52 100-159 136-187 (361)
205 3bgw_A DNAB-like replicative h 28.6 1.3E+02 0.0044 26.0 6.7 59 98-156 296-358 (444)
206 3f6p_A Transcriptional regulat 28.6 1.2E+02 0.0042 19.7 6.2 55 101-166 37-91 (120)
207 3ecd_A Serine hydroxymethyltra 28.6 1.6E+02 0.0056 23.5 7.0 50 99-159 161-210 (425)
208 1mvo_A PHOP response regulator 28.5 1.3E+02 0.0044 19.8 5.9 44 102-155 39-82 (136)
209 2dri_A D-ribose-binding protei 28.4 83 0.0028 24.0 4.9 41 104-157 51-91 (271)
210 3m9w_A D-xylose-binding peripl 28.4 1.9E+02 0.0065 22.3 7.1 45 101-158 49-93 (313)
211 4dq6_A Putative pyridoxal phos 28.4 70 0.0024 25.5 4.6 53 99-159 155-207 (391)
212 3gt7_A Sensor protein; structu 28.2 1.5E+02 0.005 20.4 7.6 60 100-167 41-100 (154)
213 2ojp_A DHDPS, dihydrodipicolin 28.1 2.4E+02 0.0082 22.8 8.1 63 99-168 24-90 (292)
214 3rjt_A Lipolytic protein G-D-S 27.6 1.3E+02 0.0046 21.4 5.7 44 100-143 120-163 (216)
215 3gbv_A Putative LACI-family tr 27.4 1.1E+02 0.0038 23.2 5.5 44 102-158 61-104 (304)
216 1xky_A Dihydrodipicolinate syn 27.2 2.2E+02 0.0075 23.2 7.6 63 99-168 35-101 (301)
217 1ii7_A MRE11 nuclease; RAD50, 27.2 2.2E+02 0.0074 23.0 7.5 53 99-154 29-81 (333)
218 1rd5_A Tryptophan synthase alp 27.2 88 0.003 24.7 5.0 53 100-155 35-101 (262)
219 3ruy_A Ornithine aminotransfer 27.2 46 0.0016 26.8 3.4 55 99-159 172-226 (392)
220 3tva_A Xylose isomerase domain 27.1 2.1E+02 0.0073 21.9 9.6 69 99-168 104-172 (290)
221 3pdi_A Nitrogenase MOFE cofact 27.0 35 0.0012 30.2 2.7 56 97-159 109-165 (483)
222 1sff_A 4-aminobutyrate aminotr 27.0 1.3E+02 0.0045 24.3 6.1 55 99-159 184-243 (426)
223 2q8u_A Exonuclease, putative; 26.9 1.1E+02 0.0039 24.6 5.7 52 98-154 49-102 (336)
224 3u7q_A Nitrogenase molybdenum- 26.9 51 0.0017 29.3 3.8 57 97-160 130-188 (492)
225 1ccw_A Protein (glutamate muta 26.8 1.1E+02 0.0038 22.0 5.1 52 86-143 30-81 (137)
226 3cu5_A Two component transcrip 26.8 82 0.0028 21.4 4.2 45 101-155 40-84 (141)
227 3daq_A DHDPS, dihydrodipicolin 26.7 1.5E+02 0.0052 24.1 6.5 51 99-156 86-136 (292)
228 3hdv_A Response regulator; PSI 26.7 1.4E+02 0.0048 19.7 6.5 54 104-167 45-100 (136)
229 3h6e_A Carbohydrate kinase, FG 26.7 2.2E+02 0.0075 24.9 7.9 56 63-118 6-76 (482)
230 3hcw_A Maltose operon transcri 26.7 1.2E+02 0.004 23.5 5.6 44 100-158 58-101 (295)
231 3h75_A Periplasmic sugar-bindi 26.6 1.2E+02 0.0041 24.1 5.8 47 99-159 50-97 (350)
232 3e96_A Dihydrodipicolinate syn 26.4 1.4E+02 0.0049 24.6 6.3 49 100-155 96-144 (316)
233 3gka_A N-ethylmaleimide reduct 26.4 1.9E+02 0.0066 24.5 7.3 56 99-169 252-307 (361)
234 4dpp_A DHDPS 2, dihydrodipicol 26.4 2.2E+02 0.0076 24.4 7.7 64 98-168 81-148 (360)
235 3h7f_A Serine hydroxymethyltra 26.3 1.7E+02 0.0059 24.4 6.9 51 99-160 174-224 (447)
236 3grc_A Sensor protein, kinase; 26.2 1.4E+02 0.0049 19.7 6.7 53 100-162 40-94 (140)
237 3m5v_A DHDPS, dihydrodipicolin 26.2 2.6E+02 0.009 22.7 7.9 65 98-168 29-97 (301)
238 1y80_A Predicted cobalamin bin 26.2 1.7E+02 0.0057 22.2 6.3 63 86-154 115-177 (210)
239 3vk5_A MOEO5; TIM barrel, tran 26.2 1.2E+02 0.0041 25.6 5.7 45 101-153 57-101 (286)
240 3tqx_A 2-amino-3-ketobutyrate 26.2 74 0.0025 25.4 4.4 51 100-159 160-215 (399)
241 3r0j_A Possible two component 26.1 2.1E+02 0.0072 21.5 7.9 58 100-167 57-114 (250)
242 3md9_A Hemin-binding periplasm 26.0 2.2E+02 0.0075 21.7 7.3 45 106-165 55-99 (255)
243 2w40_A Glycerol kinase, putati 25.8 1.3E+02 0.0045 26.1 6.2 19 64-82 5-23 (503)
244 1bdg_A Hexokinase; phosphotran 25.7 51 0.0017 29.0 3.5 20 62-81 67-86 (451)
245 3cpr_A Dihydrodipicolinate syn 25.6 2.5E+02 0.0087 22.9 7.7 63 99-168 39-105 (304)
246 2wkj_A N-acetylneuraminate lya 25.6 2.5E+02 0.0085 22.9 7.6 65 95-170 30-102 (303)
247 1gc0_A Methionine gamma-lyase; 25.4 78 0.0027 26.0 4.5 53 99-161 140-192 (398)
248 3flu_A DHDPS, dihydrodipicolin 25.4 1.7E+02 0.0059 23.8 6.6 50 100-156 92-141 (297)
249 3qze_A DHDPS, dihydrodipicolin 25.3 1.7E+02 0.0059 24.1 6.6 50 100-156 108-157 (314)
250 1m32_A 2-aminoethylphosphonate 25.3 1.5E+02 0.0052 23.0 6.0 52 99-159 119-171 (366)
251 3hvy_A Cystathionine beta-lyas 25.1 1.1E+02 0.0038 26.3 5.5 55 98-159 163-222 (427)
252 2x5d_A Probable aminotransfera 25.0 1.3E+02 0.0045 24.4 5.8 53 100-159 163-215 (412)
253 3m5v_A DHDPS, dihydrodipicolin 24.9 1.7E+02 0.006 23.8 6.5 51 99-156 92-142 (301)
254 1tjn_A Sirohydrochlorin cobalt 24.8 1.3E+02 0.0043 22.2 5.2 47 112-163 26-75 (156)
255 1mio_B Nitrogenase molybdenum 24.8 2.1E+02 0.0071 24.8 7.3 59 97-159 83-143 (458)
256 2fz5_A Flavodoxin; alpha/beta 24.8 1.3E+02 0.0045 20.3 5.0 40 110-153 46-85 (137)
257 2ht9_A Glutaredoxin-2; thiored 24.7 1.3E+02 0.0046 21.7 5.3 10 66-75 9-18 (146)
258 1vp4_A Aminotransferase, putat 24.6 1.5E+02 0.0053 24.2 6.2 55 99-159 169-231 (425)
259 2ch1_A 3-hydroxykynurenine tra 24.6 66 0.0023 25.7 3.8 52 99-159 132-183 (396)
260 3av0_A DNA double-strand break 24.5 1.9E+02 0.0066 24.0 6.9 53 99-154 49-101 (386)
261 1cza_N Hexokinase type I; stru 24.3 56 0.0019 31.3 3.8 20 62-81 77-96 (917)
262 2yxg_A DHDPS, dihydrodipicolin 24.3 2.6E+02 0.009 22.5 7.5 64 98-168 22-89 (289)
263 3tak_A DHDPS, dihydrodipicolin 24.3 1.7E+02 0.0059 23.7 6.4 50 100-156 86-135 (291)
264 3eb2_A Putative dihydrodipicol 24.3 1.7E+02 0.0059 23.9 6.4 51 99-156 88-138 (300)
265 1tjy_A Sugar transport protein 24.2 2E+02 0.0069 22.5 6.6 44 100-157 51-94 (316)
266 2gou_A Oxidoreductase, FMN-bin 24.1 1.6E+02 0.0053 24.9 6.2 62 99-169 252-313 (365)
267 3na8_A Putative dihydrodipicol 24.0 1.7E+02 0.0058 24.2 6.4 50 100-156 109-158 (315)
268 4ab4_A Xenobiotic reductase B; 23.9 2.3E+02 0.0079 24.0 7.3 56 99-169 244-299 (362)
269 1svv_A Threonine aldolase; str 23.9 1.9E+02 0.0065 22.4 6.4 53 99-158 128-186 (359)
270 3fq8_A Glutamate-1-semialdehyd 23.7 1.1E+02 0.0039 25.0 5.2 57 98-159 185-243 (427)
271 2ehh_A DHDPS, dihydrodipicolin 23.7 2.5E+02 0.0085 22.7 7.2 64 98-168 22-89 (294)
272 3cpr_A Dihydrodipicolinate syn 23.7 2.5E+02 0.0085 22.9 7.3 50 100-156 101-150 (304)
273 2dr3_A UPF0273 protein PH0284; 23.6 2.1E+02 0.0072 21.1 6.4 59 97-159 115-174 (247)
274 3iwp_A Copper homeostasis prot 23.5 3.3E+02 0.011 22.8 8.2 59 102-169 116-177 (287)
275 3h5t_A Transcriptional regulat 23.4 1.2E+02 0.0041 24.3 5.2 45 99-158 117-161 (366)
276 3si9_A DHDPS, dihydrodipicolin 23.3 1.9E+02 0.0065 23.9 6.5 50 100-156 107-156 (315)
277 1f6k_A N-acetylneuraminate lya 23.2 2.5E+02 0.0086 22.7 7.2 50 100-156 89-138 (293)
278 2vk2_A YTFQ, ABC transporter p 23.1 2.6E+02 0.0088 21.5 7.1 43 101-157 50-92 (306)
279 3bh0_A DNAB-like replicative h 23.0 1.7E+02 0.0057 23.8 6.0 59 98-156 167-229 (315)
280 3l21_A DHDPS, dihydrodipicolin 23.0 3.1E+02 0.011 22.4 8.6 63 99-168 38-104 (304)
281 3huu_A Transcription regulator 22.8 1.3E+02 0.0046 23.2 5.2 44 100-158 73-116 (305)
282 1kgs_A DRRD, DNA binding respo 22.8 2.2E+02 0.0076 20.6 6.5 53 101-163 37-89 (225)
283 1mio_A Nitrogenase molybdenum 22.7 2.1E+02 0.0071 25.6 7.0 54 97-159 121-177 (533)
284 2r8w_A AGR_C_1641P; APC7498, d 22.6 2.5E+02 0.0086 23.3 7.2 65 95-170 53-125 (332)
285 3cg4_A Response regulator rece 22.6 1.5E+02 0.0051 19.6 4.9 46 100-155 41-88 (142)
286 1a04_A Nitrate/nitrite respons 22.4 2.2E+02 0.0077 20.5 7.7 57 101-167 42-98 (215)
287 2vc6_A MOSA, dihydrodipicolina 22.3 2.1E+02 0.0072 23.1 6.5 50 100-156 85-134 (292)
288 2bkx_A Glucosamine-6-phosphate 22.3 1.8E+02 0.0061 22.4 5.9 48 100-158 18-70 (242)
289 3o1i_D Periplasmic protein TOR 22.3 1.1E+02 0.0037 23.4 4.5 43 101-158 55-97 (304)
290 2vtf_A Endo-beta-N-acetylgluco 22.3 2.2E+02 0.0075 26.3 7.2 56 98-156 157-212 (626)
291 1f07_A Coenzyme F420-dependent 22.1 1.5E+02 0.0051 23.8 5.5 38 97-140 281-318 (321)
292 3l21_A DHDPS, dihydrodipicolin 22.0 1.6E+02 0.0053 24.2 5.7 51 99-156 99-149 (304)
293 2zc0_A Alanine glyoxylate tran 21.9 1.6E+02 0.0056 23.6 5.7 55 99-159 158-218 (407)
294 3d02_A Putative LACI-type tran 21.9 2.5E+02 0.0084 21.3 6.6 43 101-157 53-95 (303)
295 2o0r_A RV0858C (N-succinyldiam 21.8 1.2E+02 0.0042 24.6 5.0 54 99-159 150-203 (411)
296 2ehh_A DHDPS, dihydrodipicolin 21.7 2.3E+02 0.0077 23.0 6.6 50 100-156 85-134 (294)
297 4fbw_A DNA repair protein RAD3 21.7 1.6E+02 0.0056 25.6 6.0 43 98-142 40-82 (417)
298 2fep_A Catabolite control prot 21.5 2.6E+02 0.009 21.3 6.7 42 101-157 63-104 (289)
299 3d0c_A Dihydrodipicolinate syn 21.5 2.8E+02 0.0097 22.7 7.2 49 100-155 96-144 (314)
300 2v9d_A YAGE; dihydrodipicolini 21.5 2.6E+02 0.0091 23.4 7.1 65 95-170 50-122 (343)
301 2dr1_A PH1308 protein, 386AA l 21.4 1.8E+02 0.0063 22.8 5.9 52 99-159 134-186 (386)
302 3pdi_B Nitrogenase MOFE cofact 21.4 47 0.0016 29.2 2.4 60 96-159 78-139 (458)
303 3nhm_A Response regulator; pro 21.3 1.8E+02 0.0061 18.9 6.1 52 100-159 37-88 (133)
304 1xky_A Dihydrodipicolinate syn 21.2 2.1E+02 0.0072 23.3 6.3 50 100-156 97-146 (301)
305 2xdq_B Light-independent proto 21.1 73 0.0025 28.1 3.7 55 96-159 74-131 (511)
306 3tak_A DHDPS, dihydrodipicolin 21.1 3.3E+02 0.011 22.0 8.4 63 99-168 24-90 (291)
307 3c3w_A Two component transcrip 20.9 1.4E+02 0.0048 22.2 4.8 56 101-166 38-93 (225)
308 3jtx_A Aminotransferase; NP_28 20.9 1.1E+02 0.0038 24.4 4.5 53 100-159 159-211 (396)
309 1zgz_A Torcad operon transcrip 20.9 1.7E+02 0.0059 18.7 7.8 55 101-166 37-91 (122)
310 2yxg_A DHDPS, dihydrodipicolin 20.9 2.2E+02 0.0075 23.0 6.3 50 100-156 85-134 (289)
311 2e7j_A SEP-tRNA:Cys-tRNA synth 20.8 1.9E+02 0.0066 22.6 5.9 52 99-159 132-187 (371)
312 3e3m_A Transcriptional regulat 20.8 3.1E+02 0.011 21.7 7.2 42 101-157 117-158 (355)
313 3si9_A DHDPS, dihydrodipicolin 20.7 2.4E+02 0.0082 23.3 6.6 63 99-168 45-111 (315)
314 1yiz_A Kynurenine aminotransfe 20.7 1.7E+02 0.0057 23.8 5.6 54 99-159 172-225 (429)
315 3dz1_A Dihydrodipicolinate syn 20.7 2.1E+02 0.0073 23.5 6.3 51 100-156 92-142 (313)
316 1o5k_A DHDPS, dihydrodipicolin 20.5 2.5E+02 0.0086 22.9 6.7 65 95-170 31-103 (306)
317 1f6k_A N-acetylneuraminate lya 20.4 2.5E+02 0.0086 22.7 6.6 63 99-168 26-93 (293)
318 1vjo_A Alanine--glyoxylate ami 20.3 97 0.0033 24.8 4.0 52 99-159 148-199 (393)
319 1xhf_A DYE resistance, aerobic 20.3 1.8E+02 0.0061 18.6 7.9 55 101-166 38-92 (123)
320 3n53_A Response regulator rece 20.2 1.6E+02 0.0056 19.4 4.7 50 100-157 36-85 (140)
321 3fsl_A Aromatic-amino-acid ami 20.2 1.6E+02 0.0056 23.4 5.4 55 99-159 160-216 (397)
322 3a5f_A Dihydrodipicolinate syn 20.2 2.6E+02 0.0089 22.6 6.7 63 99-168 24-90 (291)
323 3ilh_A Two component response 20.2 1.9E+02 0.0067 19.0 8.3 57 101-167 46-111 (146)
324 8abp_A L-arabinose-binding pro 20.1 2.9E+02 0.0099 21.0 7.5 44 100-157 48-91 (306)
325 1xi9_A Putative transaminase; 20.1 1.5E+02 0.005 24.0 5.1 54 99-159 164-217 (406)
326 1z69_A COG2141, coenzyme F420- 20.0 1.4E+02 0.0048 24.0 5.0 37 97-139 287-323 (327)
327 3d8u_A PURR transcriptional re 20.0 2.8E+02 0.0095 20.7 6.5 41 102-157 51-91 (275)
No 1
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=100.00 E-value=2.4e-34 Score=223.54 Aligned_cols=105 Identities=29% Similarity=0.426 Sum_probs=91.9
Q ss_pred CceEEEEecCCCeEEEEEecC--CeeEEeEEEEccc-hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHH
Q 030836 62 GGFSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAG 138 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD~--~~a~Pl~~i~~~~-~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~ 138 (170)
.+++||||||+||||||+||+ .+|+|+++|.+++ ...+++|.+++++|+++.||||+|++|||+++++++++++|++
T Consensus 2 ~~~iLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~ 81 (138)
T 1nu0_A 2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFAN 81 (138)
T ss_dssp CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCEEEEEEEcCCCCEEeeEEEEEcCCcchHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHH
Confidence 358999999999999999996 4899999998643 3457899999999999999999999999999999999999999
Q ss_pred HHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836 139 RLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169 (170)
Q Consensus 139 ~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e 169 (170)
+|++++ ++||++||||+||.+|++.|++
T Consensus 82 ~L~~~~---~lpV~~~DERlTT~~A~~~l~~ 109 (138)
T 1nu0_A 82 RIHGRF---GVEVKLHDERLSTVEARSGLFE 109 (138)
T ss_dssp HHHHHH---CCCEEEEEEECCCCCC------
T ss_pred HHHHHh---CCCEEEEcCCcCHHHHHHHHHH
Confidence 999986 7999999999999999999976
No 2
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=99.97 E-value=3.5e-32 Score=200.47 Aligned_cols=94 Identities=30% Similarity=0.333 Sum_probs=86.4
Q ss_pred eEEEEecCCCeEEEEEecC--CeeEEeEEEEccc-hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHH
Q 030836 64 FSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRL 140 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~--~~a~Pl~~i~~~~-~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L 140 (170)
++||||||+||||||+||+ .+|+|+.+|.+++ ...+++|.+++++|+++.||||+|++|||+++++++++++|+++|
T Consensus 2 riLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L 81 (98)
T 1iv0_A 2 RVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEAL 81 (98)
T ss_dssp CEEEEEESSSEEEEEEECSCCSSCCCEEEEECCCHHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHH
T ss_pred cEEEEEeCCCEEEEEEEeCCCCeeeeeEEEEccCcHHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHH
Confidence 6999999999999999996 4899999997544 345789999999999999999999999999999999999999999
Q ss_pred HHhhccCCccEEEEcCcccHH
Q 030836 141 AVRAAERGWRVYLLDEHRTSA 161 (170)
Q Consensus 141 ~~~~~~~~lpV~lvDER~TT~ 161 (170)
+++ ++||++||||+||.
T Consensus 82 ~~~----~lpV~~~DERlTT~ 98 (98)
T 1iv0_A 82 RAR----GVEVELWDERFTTK 98 (98)
T ss_dssp HHT----TCEEEEECCSCCCC
T ss_pred hcC----CCCEEEECCCCCCC
Confidence 985 59999999999984
No 3
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=99.96 E-value=3.7e-29 Score=196.18 Aligned_cols=104 Identities=26% Similarity=0.371 Sum_probs=95.5
Q ss_pred ceEEEEecCCCeEEEEEecC--CeeEEeEEEEccc---hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHH
Q 030836 63 GFSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRG---EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVA 137 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~--~~a~Pl~~i~~~~---~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~ 137 (170)
+++||||||++|||+|++|. .++.|+.+|...+ ....+.|.+++++|+|+.||||+|++|||+.++++.+++.|+
T Consensus 3 mriLGiDpG~~riGvAv~d~~g~~a~p~~~I~~~~~r~~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~ 82 (150)
T 1vhx_A 3 LRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFA 82 (150)
T ss_dssp EEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHH
T ss_pred CEEEEEEccCCEEEEEEEECCCCEEeeEEEEEcCCcchHHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHH
Confidence 57999999999999999995 4899999998543 345789999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836 138 GRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169 (170)
Q Consensus 138 ~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e 169 (170)
..|++++ ++||++||||+||.+|++.|++
T Consensus 83 ~~L~~~~---~lpV~~vDEr~Ts~~Ak~~l~~ 111 (150)
T 1vhx_A 83 KVLETTY---NVPVVLWDERLTTMAAEKMLIA 111 (150)
T ss_dssp HHHHHHH---CSCEEEECCSSCHHHHHHHHHH
T ss_pred HHHHHhh---CCCEEEecCCCCHHHHHHHHHH
Confidence 9999875 7999999999999999999875
No 4
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=98.48 E-value=1.5e-06 Score=68.93 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=61.1
Q ss_pred ceEEEEecCCCeEEEEEecC--C---eeE--EeEEEEccch--------hHHHHHHHHHHHcCCCEEEEeecC-CCCCCC
Q 030836 63 GFSLGVDLGLSRTGLALSKG--F---CVR--PLTVLKLRGE--------KLELQLLEIAQREETDEFIIGLPK-SWDGSE 126 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~--~---~a~--Pl~~i~~~~~--------~~~~~L~~li~e~~v~~IVVGlPl-~~dGt~ 126 (170)
++|||||+|..++|+++.|. . ..+ -.++|..... ...+.|.+++++|+++.++|--|. +.|.+.
T Consensus 1 MrILGIDPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~~~~~~~~RL~~I~~~l~~~i~~~~Pd~vaiE~~F~~~n~~s 80 (166)
T 4ep4_A 1 MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNEL 80 (166)
T ss_dssp CEEEEEECCSSEEEEEEEEECSSSSSCEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHCCSEEEEECCCCSSCSHH
T ss_pred CEEEEEccccCceEEEEEEecCCccceEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeehhhccChHH
Confidence 37999999999999999883 3 333 3367764321 235789999999999999999997 344433
Q ss_pred ChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 127 TPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 127 s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
.-..-+++-.+.....+ .++||+.+
T Consensus 81 al~lgqarGv~~la~~~---~glpv~ey 105 (166)
T 4ep4_A 81 AYKVGWALGAVLVAAFE---AGVPVYAY 105 (166)
T ss_dssp HHHHHHHHHHHHHHHHH---HTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHH---cCCCEEEE
Confidence 33334455555444443 38999876
No 5
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=97.88 E-value=0.00031 Score=54.95 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=56.1
Q ss_pred ceEEEEecCCCeEEEEEec--CCe--eEEeEEEEccch-------hHHHHHHHHHHHcCCCEEEEeecCCCCCCCCh-hH
Q 030836 63 GFSLGVDLGLSRTGLALSK--GFC--VRPLTVLKLRGE-------KLELQLLEIAQREETDEFIIGLPKSWDGSETP-QS 130 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD--~~~--a~Pl~~i~~~~~-------~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~-~~ 130 (170)
++|||||+|..++|+|+.+ +.. ..-.+++..... ...+.|.+++++|+++.++|=-+.--.+..+. ..
T Consensus 1 m~ILGIDPGl~~tG~gvi~~~g~~~~~v~~G~i~t~~~~~~~Rl~~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~l 80 (158)
T 1hjr_A 1 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL 80 (158)
T ss_dssp CEEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH
T ss_pred CEEEEEccCCCCeeEEEEEecCCeEEEEEeeEEECCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccChHHHHHH
Confidence 3799999999999999998 332 233445553311 22467999999999999999988753332221 12
Q ss_pred HHHHHHHHHHHHhhccCCccEEEE
Q 030836 131 NKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 131 ~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
-+++-.+.....+ .++||..+
T Consensus 81 gqarGv~~~a~~~---~~ipv~ey 101 (158)
T 1hjr_A 81 GQARGVAIVAAVN---QELPVFEY 101 (158)
T ss_dssp HHHHHHHHHHHHT---TTCCEEEE
T ss_pred HHHHHHHHHHHHH---cCCCEEEE
Confidence 2223222222222 48998865
No 6
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.83 E-value=0.00011 Score=70.18 Aligned_cols=93 Identities=15% Similarity=0.207 Sum_probs=64.8
Q ss_pred CceEEEEecC-CCeEEEEEecCC-eeEEeEEE-Eccc----hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHH
Q 030836 62 GGFSLGVDLG-LSRTGLALSKGF-CVRPLTVL-KLRG----EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVR 134 (170)
Q Consensus 62 ~g~iLgID~G-~kRiGVAvsD~~-~a~Pl~~i-~~~~----~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr 134 (170)
+.++||+|+| +.-|.+|+.|.. ...-..++ +... .+....|.+++.+|+|+.|+|| |||.+ +..+
T Consensus 328 ~~~vlg~dpg~r~g~k~a~vd~~G~~l~~~~iy~~~~~~~~~~~~~~l~~li~~~~~~~IaIG-----ngtas---ret~ 399 (785)
T 3bzc_A 328 PRATLGLDPGLRTGVKVAVVDATGKLLDTATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIG-----NGTAS---RETD 399 (785)
T ss_dssp SCCEEEEECCSSSCEEEEEECTTSCEEEEEEECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEE-----SSTTH---HHHH
T ss_pred CCeEEEECCCCcCceEEEEECCCCCEEEEEEEecCCchhHHHHHHHHHHHHHHHcCCCEEEEC-----CCccC---HHHH
Confidence 4589999999 577899999953 11222222 2211 2345789999999999999999 78865 4455
Q ss_pred HHHHHHHHhhccCCccEEEEcCcccHHH
Q 030836 135 SVAGRLAVRAAERGWRVYLLDEHRTSAE 162 (170)
Q Consensus 135 ~F~~~L~~~~~~~~lpV~lvDER~TT~e 162 (170)
.|+..+.+..+...+++++++|..++.-
T Consensus 400 ~~v~~l~~~~~~~~i~~v~v~e~gArvy 427 (785)
T 3bzc_A 400 KLAGELIKKYPGMKLTKIMVSEAGASVY 427 (785)
T ss_dssp HHHHHHHHHCGGGCCEEEEECCHHHHHH
T ss_pred HHHHHHHHhcccCCCCEEEEcCCcCCHH
Confidence 6766665544212689999999886653
No 7
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0042 Score=61.05 Aligned_cols=92 Identities=12% Similarity=0.017 Sum_probs=56.5
Q ss_pred ceEEEEecCCCe-----EEEEEecCC-eeEEeEEE-----Eccc-hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhH
Q 030836 63 GFSLGVDLGLSR-----TGLALSKGF-CVRPLTVL-----KLRG-EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQS 130 (170)
Q Consensus 63 g~iLgID~G~kR-----iGVAvsD~~-~a~Pl~~i-----~~~~-~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~ 130 (170)
.++||||+|-.. |-+|+.|.. ...-..+| +... ......|.+++.+|+|+.|+|| +|+. +..
T Consensus 519 ~~VlaldpG~~~~~~~g~k~a~vd~~G~~l~~~~i~~~~~~~~~~~~~~~~l~~li~~~~~~~IaIG-----n~s~-et~ 592 (1030)
T 3psf_A 519 PKILSLTCGQGRFGADAIIAVYVNRKGDFIRDYKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGIN-----GPNP-KTQ 592 (1030)
T ss_dssp CCEEEEECTTCCTTTSCEEEEEECTTSCEEEEEEECSCTTCSSCCHHHHHHHHHHHHHHCCSEEEEC-----CSST-HHH
T ss_pred CeEEEecCCCCCCCCCCeEEEEECCCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHHHcCCcEEEEC-----CCCH-HHH
Confidence 489999999763 778999953 11222333 1111 2345789999999999999999 5543 222
Q ss_pred HHHHHHHHHHHHhh----ccCCccEEEEcCcccH
Q 030836 131 NKVRSVAGRLAVRA----AERGWRVYLLDEHRTS 160 (170)
Q Consensus 131 ~~vr~F~~~L~~~~----~~~~lpV~lvDER~TT 160 (170)
+.++...+.+++.. +..+++|++|||..-|
T Consensus 593 ~l~~~l~~~i~~~~~~~~~~~~i~~~iV~e~gAs 626 (1030)
T 3psf_A 593 KFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAI 626 (1030)
T ss_dssp HHHHHHHHHHHHTTCBCTTSCBCCEEECCCTTHH
T ss_pred HHHHHHHHHHHhhccccccCCCccEEEecchHHH
Confidence 22233333333210 0125899999999843
No 8
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0048 Score=61.60 Aligned_cols=88 Identities=15% Similarity=0.022 Sum_probs=56.2
Q ss_pred ceEEEEecCCCe-----EEEEEecCC-eeEEeEEE-----Ecc-chhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhH
Q 030836 63 GFSLGVDLGLSR-----TGLALSKGF-CVRPLTVL-----KLR-GEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQS 130 (170)
Q Consensus 63 g~iLgID~G~kR-----iGVAvsD~~-~a~Pl~~i-----~~~-~~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~ 130 (170)
.++||||+|-.. |-+|+.|.. ...-..+| +.. .....+.|.+++.+|+|+.|+|| +|+
T Consensus 516 ~~VlaldpG~r~~g~~g~k~a~vD~~G~vl~~~~i~~~~~~~~~~~~a~~~l~~li~~~~~~vIaIG-----n~s----- 585 (1219)
T 3psi_A 516 PKILSLTCGQGRFGADAIIAVYVNRKGDFIRDYKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGIN-----GPN----- 585 (1219)
T ss_dssp CCEEEEECTTCCTTTTCEEEEEECTTSCEEEEEEECSCTTCSSCSHHHHHHHHHHHHHHCCSEEEEC-----CSS-----
T ss_pred CeEEEecCCCCCCCCCceEEEEECCCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHHHcCCcEEEEC-----CCC-----
Confidence 489999999863 777999853 11222333 111 12345789999999999999999 554
Q ss_pred HHHHHHHHHHHHhhc--------cCCccEEEEcCcccH
Q 030836 131 NKVRSVAGRLAVRAA--------ERGWRVYLLDEHRTS 160 (170)
Q Consensus 131 ~~vr~F~~~L~~~~~--------~~~lpV~lvDER~TT 160 (170)
+.++.|.+.+.+.+. ..+++|++|||..-|
T Consensus 586 ret~~l~~~l~~~i~~~~~~~~~~~~i~vviV~e~gAs 623 (1219)
T 3psi_A 586 PKTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAI 623 (1219)
T ss_dssp THHHHHHHHHHHHHHHTTCBCSSSCBCCEEECCCTTHH
T ss_pred HHHHHHHHHHHHHHHhhccccccCCCccEEEECchHHH
Confidence 233444444432110 135899999998844
No 9
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=94.85 E-value=0.088 Score=43.84 Aligned_cols=101 Identities=11% Similarity=-0.003 Sum_probs=65.4
Q ss_pred ceEEEEecCCCeEEEEEecCC-eeEEeEEEEccc-hhHHHHHHHHHHHcCCCEEEEeecCCCC--------CC--CCh--
Q 030836 63 GFSLGVDLGLSRTGLALSKGF-CVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSWD--------GS--ETP-- 128 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~~~-~~~~~~L~~li~e~~v~~IVVGlPl~~d--------Gt--~s~-- 128 (170)
..++|||+|..+|=+|+.|.. ...-...++... ....+.+.+.++++++..|-||.|=..| |. .++
T Consensus 3 ~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~t~~~~~~l~~i~~~~~~~~i~gigi~~pG~vd~~~~~~~~G~i~~~~~~ 82 (302)
T 3epq_A 3 AMLGGIEAGGTXFVCAVGREDGTIIDRIEFPTXMPDETIEXVIQYFSQFSLQAIGIGSFGPVDNDXTSQTYGTITATPXA 82 (302)
T ss_dssp CCEEEEEECSSEEEEEEECTTSCEEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEEEECSSEECCTTSTTTTEECCCSST
T ss_pred cEEEEEEECcceeEEEEEECCCcEEEEEEecCCChHHHHHHHHHHhccCCceEEEEEeceeeccccccccccEEecCCCC
Confidence 368999999999999999942 111122233222 3445677788888899999999984332 21 011
Q ss_pred hHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 129 QSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 129 ~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
..+. ..+.+.|++++ ++||++.+.-.....|+.++
T Consensus 83 ~w~~-~~l~~~l~~~~---~~pV~v~NDanaaalaE~~~ 117 (302)
T 3epq_A 83 GWRH-YPFLQTVXNEM---XIPVGFSTDVNAAALGEFLF 117 (302)
T ss_dssp TTBT-CCHHHHHHHHH---CSCEEEEEHHHHHHHHHHHH
T ss_pred CccC-CChHHHHHHHh---CCCEEEechhHHHHHHHHHh
Confidence 0111 25677888886 79999988776666666543
No 10
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=94.75 E-value=0.11 Score=42.92 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=59.3
Q ss_pred eEEEEecCCCeEEEEEecCCeeEEeEEEEccc---hhHHHHHHHHHH------HcCCCEEEEeecCCCC---CCCC--h-
Q 030836 64 FSLGVDLGLSRTGLALSKGFCVRPLTVLKLRG---EKLELQLLEIAQ------REETDEFIIGLPKSWD---GSET--P- 128 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~~~a~Pl~~i~~~~---~~~~~~L~~li~------e~~v~~IVVGlPl~~d---Gt~s--~- 128 (170)
.++|||+|..+|-+++.|.....-...++... ....+.|.++++ ..++..|.||.|=..| |... +
T Consensus 2 ~~lgiDiGgt~i~~~l~d~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~~ 81 (302)
T 3vov_A 2 KVVGLDLGGTKIAAGVFDGKRLLSKVVVPTPKEGGERVAEALAEAAERAEREAGVRGEAIGLGTPGPLDFRRGVIRFAPN 81 (302)
T ss_dssp CEEEEEECSSEEEEEEECSSSBSCCEEEECCSSCHHHHHHHHHHHHHHHHHHHTCCCSSEEEEESSCEETTTTEEC---C
T ss_pred EEEEEEEcCCEEEEEEEeCCCcEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccCCceEEEEEecccEeCCCCEEEcCCC
Confidence 68999999999999999943111122222111 223344444433 2579999999995443 2111 0
Q ss_pred --hHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 129 --QSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 129 --~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
..+. ..+.+.|++++ ++||++.+.-.....|+..
T Consensus 82 ~~~w~~-~~l~~~l~~~~---~~pv~v~NDa~aaal~E~~ 117 (302)
T 3vov_A 82 IPGVQD-FPIRRILEEAT---GRPVFLENDANAAALAEHH 117 (302)
T ss_dssp CTTCTT-CCHHHHHHHHH---SSCEEEEEHHHHHHHHHHH
T ss_pred CCCcCC-CChHHHHHHhh---CCCEEEEechHHHHHHHHH
Confidence 0111 24567788876 7999998877666666544
No 11
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=94.36 E-value=0.42 Score=39.50 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=54.5
Q ss_pred CCCceEEEEecCCCeEEEEEecCC-eeEEeEEEE-cc----c-hhHHHH----HHHHHHH-----c-CCCEEEEeecCCC
Q 030836 60 WRGGFSLGVDLGLSRTGLALSKGF-CVRPLTVLK-LR----G-EKLELQ----LLEIAQR-----E-ETDEFIIGLPKSW 122 (170)
Q Consensus 60 ~~~g~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~-~~----~-~~~~~~----L~~li~e-----~-~v~~IVVGlPl~~ 122 (170)
+..+.+||||+|..+|=+++.|.. ......... .. + ....+. +.+++++ . ++..|-||.|
T Consensus 3 ~M~~~~lgiDiGgt~~~~~l~d~~g~i~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi~~p--- 79 (347)
T 2ch5_A 3 FMAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLS--- 79 (347)
T ss_dssp SSSCEEEEEEECTTCEEEEEEETTSCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEET---
T ss_pred ccceEEEEEEcCccceEEEEEeCCCCEEEEEeCCCCCcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEEEEecc---
Confidence 334589999999999999999832 111111221 11 1 122333 4444443 2 5788999987
Q ss_pred CCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccH
Q 030836 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160 (170)
Q Consensus 123 dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT 160 (170)
|-..+. .-..+.+.|+++++..++||++.+.-...
T Consensus 80 -G~vd~~--~~~~l~~~l~~~~~~~~~pv~v~NDa~aa 114 (347)
T 2ch5_A 80 -GGDQED--AGRILIEELRDRFPYLSESYLITTDAAGS 114 (347)
T ss_dssp -TTTCHH--HHHHHHHHHHHHCTTSBSCEEEEEHHHHH
T ss_pred -CCCchH--HHHHHHHHHHHhcCCCCceEEEECcHHHH
Confidence 333322 22467778888752012899988765443
No 12
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=93.91 E-value=0.059 Score=44.84 Aligned_cols=100 Identities=14% Similarity=0.206 Sum_probs=59.3
Q ss_pred ceEEEEecCCCeEEEEEecCC---eeE-EeEEEEccchhHHHH----HHHHHHHcCCCEEEEeecCCCCCCCChh--HH-
Q 030836 63 GFSLGVDLGLSRTGLALSKGF---CVR-PLTVLKLRGEKLELQ----LLEIAQREETDEFIIGLPKSWDGSETPQ--SN- 131 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~---~a~-Pl~~i~~~~~~~~~~----L~~li~e~~v~~IVVGlPl~~dGt~s~~--~~- 131 (170)
+.+||||+|..+|=+++.|.. ..+ -..+ +.......+. +.++.+++++..|.||.|=-.|...+.. +.
T Consensus 2 ~~~lgiDiGgt~i~~~l~d~~G~i~~~~~~~~-~~~~~~~~~~i~~~i~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~~ 80 (321)
T 3vgl_A 2 GLTIGVDIGGTKIAAGVVDEEGRILSTFKVAT-PPTAEGIVDAICAAVAGASEGHDVEAVGIGAAGYVDDKRATVLFAPN 80 (321)
T ss_dssp CEEEEEEECSSEEEEEEECTTCCBCCCEEEEC-CSSHHHHHHHHHHHHHHHHTTCCEEEEEEEESSEECTTSSCEEECSS
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEEEEeeC-CCCHHHHHHHHHHHHHHHHhhcCceEEEEeccccEeCCCCEEEeCCC
Confidence 479999999999999999932 221 1111 2112233344 4444445688999999984333211100 00
Q ss_pred ---HHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 132 ---KVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 132 ---~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
.-..+.+.|++++ ++||++.+.-.....|+.+
T Consensus 81 l~w~~~~l~~~l~~~~---~~pv~v~NDa~aaal~E~~ 115 (321)
T 3vgl_A 81 IDWRHEPLKDKVEQRV---GLPVVVENDANAAAWGEYR 115 (321)
T ss_dssp SCCEEECHHHHHHHHH---CSCEEEEEHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHhhhh---CCCEEEEehhhhHHHHHHH
Confidence 0024567788876 7999998877666555544
No 13
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=93.44 E-value=0.21 Score=42.50 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=59.7
Q ss_pred CceEEEEecCCCeEEEEEecCC-eeEEeEEEEcc---c-hhHHH----HHHHHHHH-----cCCCEEEEeecCCCC---C
Q 030836 62 GGFSLGVDLGLSRTGLALSKGF-CVRPLTVLKLR---G-EKLEL----QLLEIAQR-----EETDEFIIGLPKSWD---G 124 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~~---~-~~~~~----~L~~li~e-----~~v~~IVVGlPl~~d---G 124 (170)
.+.++|||+|..+|=+++.|.. .......++.. . ....+ .+.+++++ .++..|.||.|=..| |
T Consensus 86 ~~~~lGIDiGgt~i~~~l~d~~G~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~g 165 (380)
T 2hoe_A 86 CAYVLGIEVTRDEIAACLIDASMNILAHEAHPLPSQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAAPGPIDTERG 165 (380)
T ss_dssp GCEEEEEEECSSEEEEEEEETTCCEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEESSCEETTTT
T ss_pred CCeEEEEEECCCEEEEEEECCCCCEEEEEEEccCCCCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEeeccEECCCC
Confidence 4689999999999999999932 11111222211 1 22233 34444443 468899999985433 3
Q ss_pred CCC--hh--HHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 125 SET--PQ--SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 125 t~s--~~--~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
... +. ... ..+.+.|++++ ++||++.+.-.....|+..
T Consensus 166 ~v~~~~~l~w~~-~~l~~~l~~~~---~~pV~v~NDanaaalaE~~ 207 (380)
T 2hoe_A 166 IIIDPRNFPLSQ-IPLANLLKEKY---GIEVWVENDADMGAVGEKW 207 (380)
T ss_dssp EECCCSSCTTBT-SCHHHHHHHHH---CSEEEEEEHHHHHHHHHHH
T ss_pred EEeccCCCCCcC-CChHHHHHHHh---CCCEEEechHHHHHHHHHH
Confidence 211 10 000 14567788876 7999998887666666544
No 14
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=93.32 E-value=1.3 Score=37.89 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=54.8
Q ss_pred eEEEEecCCCeEEEEEecCCeeEEeEEEEccc----------hhH---HHHHHHHHHHc-----CCCEEEEeecCCC---
Q 030836 64 FSLGVDLGLSRTGLALSKGFCVRPLTVLKLRG----------EKL---ELQLLEIAQRE-----ETDEFIIGLPKSW--- 122 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~~~a~Pl~~i~~~~----------~~~---~~~L~~li~e~-----~v~~IVVGlPl~~--- 122 (170)
.+||||+|..+|=+|+.|.........++... ... .+.+.+++.+. ++.+| ||.|=..
T Consensus 3 ~vlgidiGgt~ik~al~d~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~gI-i~~pG~vd~~ 81 (381)
T 1saz_A 3 RILTINPGSTSTKLSIFEDERMVKMQNFSHSPDELGRFQKILDQLEFREKIARQFVEETGYSLSSFSAF-VSRGGLLDPI 81 (381)
T ss_dssp EEEEEEECSSEEEEEEEETTEEEEEEEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEE-EEECCSCSCB
T ss_pred eEEEEECCccceeEEEEecchheeeeecccCcccccchhhHHHHHHHHHHHHHHHHHHcCCCccCceEE-EecCCCCCCC
Confidence 68999999999999999843211112222211 112 34566666544 57889 9988432
Q ss_pred CCCC------------------ChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 123 DGSE------------------TPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 123 dGt~------------------s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
.|.. .+..-. -.+++.|++++ ++||++.|.-.
T Consensus 82 ~G~~~~i~~~~~~~l~~~~~~~~~~nl~-~~l~~~l~~~~---~~Pv~v~NDan 131 (381)
T 1saz_A 82 PGGVYLVDGLMIKTLKSGKNGEHASNLG-AIIAHRFSSET---GVPAYVVDPVV 131 (381)
T ss_dssp CSSEEECCHHHHHHHHHTTTCCCTTHHH-HHHHHHHHHHH---CCCEEEESCTT
T ss_pred CCceEecCHHHHHHHHhcccccChhhhh-HHHHHHHHHhc---CCCEEEeCCCc
Confidence 3443 111111 25567788776 89999888765
No 15
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=92.24 E-value=0.3 Score=40.26 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=57.3
Q ss_pred ceEEEEecCCCeEEEEEecCC-eeEEeEEEEc--c-chhHHHHHHHHHHH----c-CCCEEEEeecCCCC---CCCC---
Q 030836 63 GFSLGVDLGLSRTGLALSKGF-CVRPLTVLKL--R-GEKLELQLLEIAQR----E-ETDEFIIGLPKSWD---GSET--- 127 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~--~-~~~~~~~L~~li~e----~-~v~~IVVGlPl~~d---Gt~s--- 127 (170)
+.+||||+|..+|=+++.|.. .......++. . ..+..+.|.+++++ . .+..|.||.|=..| |...
T Consensus 24 ~~~lgiDiGgt~i~~~l~d~~g~il~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~~igi~~pG~vd~~~g~v~~~~ 103 (327)
T 2ap1_A 24 AMYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGTLYAAN 103 (327)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESSBSCCTTSCCBCTT
T ss_pred ceEEEEEECCCEEEEEEEeCCCCEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcCCccEEEEEeeeeEECCCCEEEccC
Confidence 469999999999999999832 1111112221 1 12334455555542 2 37889999995433 3221
Q ss_pred -hhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHH
Q 030836 128 -PQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAV 164 (170)
Q Consensus 128 -~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~ 164 (170)
+.... ..+.+.|++++ ++||++.+.-.....|+
T Consensus 104 ~~~~~~-~~l~~~l~~~~---~~pv~v~NDa~aaalgE 137 (327)
T 2ap1_A 104 VPAASG-KPLRADLSARL---DRDVRLDNDANCFALSE 137 (327)
T ss_dssp CTTTTT-SCHHHHHHHHH---TSCEEEEEHHHHHHHHH
T ss_pred CCccCC-CChHHHHHHHH---CCCEEEecHHHHHHHHH
Confidence 11111 24567788776 78999888766555554
No 16
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=92.20 E-value=0.37 Score=39.34 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=58.4
Q ss_pred ceEEEEecCCCeEEEEEecCC-eeEEeEEEEcc----chhHH----HHHHHHHHHc-----CCCEEEEeecCCCC---CC
Q 030836 63 GFSLGVDLGLSRTGLALSKGF-CVRPLTVLKLR----GEKLE----LQLLEIAQRE-----ETDEFIIGLPKSWD---GS 125 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~~----~~~~~----~~L~~li~e~-----~v~~IVVGlPl~~d---Gt 125 (170)
+.+||||+|..+|=+++.|.. .......++.. ..... +.+.+++++. ++..|.||.|=..| |.
T Consensus 6 ~~~lgiDiggt~~~~~l~d~~g~il~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~igi~~pG~vd~~~g~ 85 (326)
T 2qm1_A 6 KKIIGIDLGGTTIKFAILTTDGVVQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGTPGSVDIEKGT 85 (326)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCTTTTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSEEETTTTE
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHcCCCccceeEEEEecccceeCCCCE
Confidence 579999999999999999932 11111122211 12223 3455555554 46678899985322 32
Q ss_pred C--ChhHH-HHH-HHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 126 E--TPQSN-KVR-SVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 126 ~--s~~~~-~vr-~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
. ++.-. .-. .+.+.|++++ ++||++.+.-.....|+..
T Consensus 86 v~~~~~l~w~~~~~l~~~l~~~~---~~pv~v~ND~~aaa~~e~~ 127 (326)
T 2qm1_A 86 VVGAYNLNWTTVQPVKEQIESAL---GIPFALDNDANVAALGERW 127 (326)
T ss_dssp EECBGGGTBCSCBCHHHHHHHHH---CSCEEEEEHHHHHHHHHHH
T ss_pred EEecCCCCccCCchHHHHHHHHh---CCCEEEecHHHHHHHHHHH
Confidence 1 11000 001 4567788876 7899998877666666543
No 17
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=92.12 E-value=1.3 Score=36.83 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=38.1
Q ss_pred eEEEEecCCCeEEEEEecCCeeEEeEEEE--ccc-hhHHHHHHHHHHHcC-----CCEEEEeec
Q 030836 64 FSLGVDLGLSRTGLALSKGFCVRPLTVLK--LRG-EKLELQLLEIAQREE-----TDEFIIGLP 119 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~~~a~Pl~~i~--~~~-~~~~~~L~~li~e~~-----v~~IVVGlP 119 (170)
++|+||+|..+|=+|+-|+........++ .++ ++....|..+++.++ ++.++|+-|
T Consensus 3 MlL~IDIGNT~iK~gl~d~~~l~~~~r~~T~~~t~de~~~~l~~ll~~~~~~~~~I~~iiISSV 66 (266)
T 3djc_A 3 LILCIDVGNSHIYGGVFDGDEIKLRFRHTSKVSTSDELGIFLKSVLRENNCSPETIRKIAICSV 66 (266)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEEEEEEECSCCCHHHHHHHHHHHHHTTTCCGGGCCEEEEEES
T ss_pred eEEEEEECCCeEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCChhhceEEEEecc
Confidence 79999999999999999964222222222 122 233457788887765 889999954
No 18
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=92.06 E-value=1.2 Score=36.74 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=60.1
Q ss_pred CCCCceEEEEecCCCeEEEEEecCC-eeEEeEEEEcc----chhHHHHHHHHHH-----HcCCCEEEEeecCCCC---CC
Q 030836 59 LWRGGFSLGVDLGLSRTGLALSKGF-CVRPLTVLKLR----GEKLELQLLEIAQ-----REETDEFIIGLPKSWD---GS 125 (170)
Q Consensus 59 ~~~~g~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~~----~~~~~~~L~~li~-----e~~v~~IVVGlPl~~d---Gt 125 (170)
+...+.+||||+|..+|=+++.|.. ...-...++.. .....+.+.+.++ ..++..|.||.|=-.| |.
T Consensus 15 ~~~~~~~lgidiggt~i~~~l~d~~g~il~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~gigi~~pG~vd~~~g~ 94 (321)
T 3r8e_A 15 LYFQGMILGIDVGGTSVKFGLVTPEGEIQNATRFMTADWVNGIGFVESMKLEIGNFLKQYPIVKGVGIGWPGLVSLDRTK 94 (321)
T ss_dssp ----CCEEEEECCSSEEEEEEECTTCCEEEEEEEEHHHHHTTTCHHHHHHHHHHHHHHHCTTCCEEEEEESSEECTTSCC
T ss_pred hccCcEEEEEEECCCEEEEEEEcCCCcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhccCCeeEEEEEecccEECCCCE
Confidence 3456789999999999999999942 11112223321 1223444444333 3579999999984332 32
Q ss_pred CC--hh---HHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 126 ET--PQ---SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 126 ~s--~~---~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
.. +. ... ..+.+.|+++++ ++||++.+.-.....|+..
T Consensus 95 v~~~~~l~~w~~-~~l~~~l~~~~~--~~pV~v~NDa~aaalaE~~ 137 (321)
T 3r8e_A 95 VILLPNIPSVVN-VPIVEILRSEFP--HIHFKIENDAKCAALGEYY 137 (321)
T ss_dssp EEEBTTBCCCCS-CCHHHHHHHHCT--TSEEEEEEHHHHHHHHHHH
T ss_pred EEeCCCCccccC-CCHHHHHHHHcC--CCCEEEEchHHHHHHHHHH
Confidence 11 00 011 255677887742 7999998876665555543
No 19
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=91.42 E-value=0.35 Score=39.11 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=59.4
Q ss_pred eEEEEecCCCeEEEEEecC--C-eeEEeEEEEc-cc-hhHHHHHHHHHHHcCCCEEEEeecCCCC---CCC--Chh---H
Q 030836 64 FSLGVDLGLSRTGLALSKG--F-CVRPLTVLKL-RG-EKLELQLLEIAQREETDEFIIGLPKSWD---GSE--TPQ---S 130 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~--~-~a~Pl~~i~~-~~-~~~~~~L~~li~e~~v~~IVVGlPl~~d---Gt~--s~~---~ 130 (170)
.++|||+|..+|=+++.|. . ... ..++. .. ....+.|.+++++.++..|.||.|=..| |.. ++. .
T Consensus 5 ~~lgidiggt~i~~~l~d~~g~il~~--~~~~~~~~~~~~~~~i~~~i~~~~i~gigi~~pG~vd~~~g~v~~~~~~~~~ 82 (292)
T 2gup_A 5 TIATIDIGGTGIKFASLTPDGKILDK--TSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYI 82 (292)
T ss_dssp CEEEEEEETTEEEEEEECTTCCEEEE--EEECCCSSHHHHHHHHHHHHTTSCCSEEEEEESSEECTTTCBEESCCSSGGG
T ss_pred EEEEEEECCCEEEEEEECCCCCEEEE--EEEeCCCCHHHHHHHHHHHHHhCCCcEEEEEecCcccCCCCEEEecCCCCcc
Confidence 5899999999999999983 2 221 12221 12 3445778888877789999999995322 321 110 1
Q ss_pred HHHHHHHHHHHHhhccCCccEEEEcCcccHHHHH
Q 030836 131 NKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAV 164 (170)
Q Consensus 131 ~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~ 164 (170)
.. ..+.+.| +++ ++||++.+.-.....|+
T Consensus 83 ~~-~~l~~~l-~~~---~~pv~v~NDa~aaa~~e 111 (292)
T 2gup_A 83 HG-FSWYEAL-SSY---QLPVHLENDANCVGLSE 111 (292)
T ss_dssp SS-SBHHHHT-GGG---CCCEEEEEHHHHHHHHH
T ss_pred cC-CCHHHHH-HHc---CCCEEEechHHHHHHHH
Confidence 11 2466777 665 79999887665544444
No 20
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=91.23 E-value=0.77 Score=38.08 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=55.2
Q ss_pred CceEEEEecCCCeEEEEEecCC-eeEEeEEEEcc---chhHHHHHHH----HHHHc--CCCEEEEeecCCCC---CCC--
Q 030836 62 GGFSLGVDLGLSRTGLALSKGF-CVRPLTVLKLR---GEKLELQLLE----IAQRE--ETDEFIIGLPKSWD---GSE-- 126 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~~---~~~~~~~L~~----li~e~--~v~~IVVGlPl~~d---Gt~-- 126 (170)
.+.++|||+|..++-+++.|.. ...-...++.. .....+.+.+ ++.++ ++..|-||.|=..| |..
T Consensus 6 ~~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~vd~~~g~v~~ 85 (310)
T 3htv_A 6 HNVVAGVDMGATHIRFCLRTAEGETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTIIS 85 (310)
T ss_dssp EEEEEEEEECSSEEEEEEEETTSCEEEEEEEEHHHHHTTCHHHHHHHHHHHHHHHHTEEEEEEEEEESSCBCTTSSCBCS
T ss_pred CCEEEEEEeCCCEEEEEEECCCCCEEEEEEecCccccHHHHHHHHHHHHHHHHHhcCCCeeEEEEeccccEeCCCCEEEe
Confidence 3589999999999999999942 11111122211 1223334444 44344 45789999984333 321
Q ss_pred Chh--HHH--HHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 127 TPQ--SNK--VRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 127 s~~--~~~--vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
++. ... ...+.+.|++++ ++||++.+.-..
T Consensus 86 ~~~l~~~~~~~~~l~~~l~~~~---~~pv~v~NDana 119 (310)
T 3htv_A 86 TPNLPLTAADLYDLADKLENTL---NCPVEFSRDVNL 119 (310)
T ss_dssp CCSSSCCHHHHTTHHHHHHHHH---TSCEEEEEHHHH
T ss_pred CCCCCCccccCccHHHHHHHHh---CCCEEEeeHHHH
Confidence 111 111 135778888886 799998876543
No 21
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=90.96 E-value=0.97 Score=36.60 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=54.1
Q ss_pred eEEEEecCCCeEEEEEecCC-eeEEeEEEEcc-----c-hhHHHHHHHHHHHc---CCCEEEEeecCCCCCCCChhHHHH
Q 030836 64 FSLGVDLGLSRTGLALSKGF-CVRPLTVLKLR-----G-EKLELQLLEIAQRE---ETDEFIIGLPKSWDGSETPQSNKV 133 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~~-----~-~~~~~~L~~li~e~---~v~~IVVGlPl~~dGt~s~~~~~v 133 (170)
.+||||+|..+|=+++.|.. .......++.. + ....+.+.+.+++. .+..|.||.|=. |.. ..+
T Consensus 3 ~~lgiDiGgt~~~~~l~d~~g~i~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~igi~~~G~-~~~-----~~~ 76 (299)
T 2e2o_A 3 IIVGVDAGGTKTKAVAYDCEGNFIGEGSSGPGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMGVAGL-DSK-----FDW 76 (299)
T ss_dssp CEEEEEECSSCEEEEEECTTSCEEEEEEESCCCHHHHCHHHHHHHHHHHHHHHHTSCCSEEEEEETTC-CSH-----HHH
T ss_pred EEEEEEeCCCcEEEEEEcCCCCEEEEEeCCCCCcccCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCCC-Cch-----hHH
Confidence 68999999999999999842 11111222211 1 22344555554432 278999999844 211 112
Q ss_pred HHHHHHHHHhhccCCccEEEEcCcccHHHHH
Q 030836 134 RSVAGRLAVRAAERGWRVYLLDEHRTSAEAV 164 (170)
Q Consensus 134 r~F~~~L~~~~~~~~lpV~lvDER~TT~eA~ 164 (170)
..+.+.|++ + ++||++++.-.....|+
T Consensus 77 ~~l~~~l~~-~---~~pv~v~ND~~aaa~~e 103 (299)
T 2e2o_A 77 ENFTPLASL-I---APKVIIQHDGVIALFAE 103 (299)
T ss_dssp HHHHHHHTT-S---SSEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHh-C---CCCEEEeCcHHHHHhhc
Confidence 466777776 5 68999987655544443
No 22
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=90.72 E-value=0.83 Score=38.89 Aligned_cols=102 Identities=20% Similarity=0.144 Sum_probs=59.3
Q ss_pred CCceEEEEecCCCeEEEEEecC--C-eeEEeEEEEc-cchhHHH----HHHHHHHHc-----CCCEEEEeecCCCC---C
Q 030836 61 RGGFSLGVDLGLSRTGLALSKG--F-CVRPLTVLKL-RGEKLEL----QLLEIAQRE-----ETDEFIIGLPKSWD---G 124 (170)
Q Consensus 61 ~~g~iLgID~G~kRiGVAvsD~--~-~a~Pl~~i~~-~~~~~~~----~L~~li~e~-----~v~~IVVGlPl~~d---G 124 (170)
..+.++|||+|..+|=+++.|. . .+.-....+. .....++ .+.+++++. ++..|.||.|=..| |
T Consensus 83 ~~~~~lgiDiG~t~i~~~l~d~~G~il~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~g 162 (406)
T 1z6r_A 83 EAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENG 162 (406)
T ss_dssp TTCEEEEEEEETTEEEEEEEETTCCEEEEEEEECCSSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEESSEEETTTT
T ss_pred CccEEEEEEEcCCEEEEEEEcCCCCEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcCCCcCceeEEEEEeecCEeCCCC
Confidence 4568999999999999999993 2 2221111111 1122333 445555443 46788899885432 2
Q ss_pred CCC--h---hHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 125 SET--P---QSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 125 t~s--~---~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
... + .... ..+.+.|++++ ++||++.+.-.....|+..
T Consensus 163 ~v~~~~~l~~w~~-~~l~~~l~~~~---~~pv~v~NDa~aaalaE~~ 205 (406)
T 1z6r_A 163 IVHRMPFYEDVKE-MPLGEALEQHT---GVPVYIQHDISAWTMAEAL 205 (406)
T ss_dssp EEEECTTCTTCSS-BCHHHHHHHHH---SSCEEEEEHHHHHHHHHHH
T ss_pred EEecCCCCCCccC-CCHHHHHHHHH---CCCEEEechhHHHHHHHHH
Confidence 110 0 0010 24567788876 7899998876666666543
No 23
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=90.42 E-value=0.74 Score=39.71 Aligned_cols=100 Identities=17% Similarity=0.067 Sum_probs=61.7
Q ss_pred CceEEEEecCCCeEEEEEecCC-eeEEeE-EEEcc--c-hhHHHHHHH---HHHH---cCCCEEEEeecCCCC---CCC-
Q 030836 62 GGFSLGVDLGLSRTGLALSKGF-CVRPLT-VLKLR--G-EKLELQLLE---IAQR---EETDEFIIGLPKSWD---GSE- 126 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD~~-~a~Pl~-~i~~~--~-~~~~~~L~~---li~e---~~v~~IVVGlPl~~d---Gt~- 126 (170)
.+.++|+|+|..++-+++.| . ...-.. .++.. + ....+.|.+ .+++ .++.+|.||.|=..| |..
T Consensus 8 ~~~~lgiDIGgt~i~~~l~d-~G~il~~~~~~~~~~~~~~~~l~~i~~~~~~i~~~~~~~i~gIGIavPG~Vd~~~G~i~ 86 (366)
T 3mcp_A 8 NRIVMTLDAGGTNFVFSAIQ-GGKEIADPVVLPACADCLDKCLGNLVEGFKAIQAGLPEAPVAISFAFPGPADYQAGIIG 86 (366)
T ss_dssp CCEEEEEECSSSEEEEEEEE-TTEECSCCEEEECCTTCHHHHHHHHHHHHHHHHTTCSSCCCEEEEECCSSEETTTTEEC
T ss_pred CCEEEEEEECcceEEEEEEE-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEEEEecceEeCCCCEEE
Confidence 46899999999999999998 4 111111 33321 1 233556666 6655 379999999984432 421
Q ss_pred -ChhHHHH---HHHHHHHHHhhccCCccEEEEcCcccHHHHHH
Q 030836 127 -TPQSNKV---RSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165 (170)
Q Consensus 127 -s~~~~~v---r~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~ 165 (170)
++.-... -.+.+.|++++ ++||++.+.-....-|+.
T Consensus 87 ~~~nlp~w~~~~~l~~~L~~~~---g~PV~veNDanaaAlgE~ 126 (366)
T 3mcp_A 87 DLPNFPSFRGGVALGPFLEDIF---GIPVFINNDGSLFAYGEA 126 (366)
T ss_dssp CCTTCGGGTTCBCHHHHHHHHH---CSCEEEECHHHHHHHHHH
T ss_pred eCCCcccccCCCCHHHHHHHHH---CCCEEEechhhHHHHHHH
Confidence 1111011 25667888886 899988877655555543
No 24
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=90.33 E-value=2.6 Score=33.86 Aligned_cols=91 Identities=19% Similarity=0.123 Sum_probs=58.9
Q ss_pred ceEEEEecCCCeEEEEEecC-CeeEEeEEEEcc-chhHHHHHHHHHHHc-----CCCEEEEeecCCCCCCCChhHHHHHH
Q 030836 63 GFSLGVDLGLSRTGLALSKG-FCVRPLTVLKLR-GEKLELQLLEIAQRE-----ETDEFIIGLPKSWDGSETPQSNKVRS 135 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~-~~a~Pl~~i~~~-~~~~~~~L~~li~e~-----~v~~IVVGlPl~~dGt~s~~~~~vr~ 135 (170)
+++||||--+..++||+.+. ....-...-.++ ...+...+.+++++. ++|.|+||.= -|+.+ --+-.-.
T Consensus 2 M~iLaIdTS~~~~svAl~~~~~~~~~~~~~~~~Hs~~L~p~i~~~L~~a~~~~~dld~Iav~~G---PGsfT-glRig~~ 77 (213)
T 3r6m_A 2 AKILAIDTATENCSVALLVNDQVISRSEVAPRDHTKKVLPMVDEVLKEAGLTLQDLDALAFGRG---PGSFT-GVRIGIG 77 (213)
T ss_dssp CCEEEEECSSSEEEEEEESSSCEEEEEEECCSCCHHHHHHHHHHHHHTTTCCTTTCSEEEEEEE---SSCHH-HHHHHHH
T ss_pred CEEEEEEccCcceEEEEEECCEEEEEEEechHHHHHHHHHHHHHHHHHcCCCHHHccEEEEecC---CCchh-hHHHHHH
Confidence 47999999999999999984 322222222221 233456777787764 6899999941 14443 3344458
Q ss_pred HHHHHHHhhccCCccEEEEcCcccHHHHH
Q 030836 136 VAGRLAVRAAERGWRVYLLDEHRTSAEAV 164 (170)
Q Consensus 136 F~~~L~~~~~~~~lpV~lvDER~TT~eA~ 164 (170)
+++.|+..+ ++|++-+ +|.+|.
T Consensus 78 ~AkgLa~~~---~iPl~gV----stL~a~ 99 (213)
T 3r6m_A 78 IAQGLAFGA---ELPMIGV----STLAAM 99 (213)
T ss_dssp HHHHHHHHT---TCCEEEE----EHHHHH
T ss_pred HHHHHHHHh---CCCEEEE----cCHHHH
Confidence 888888764 8999877 455543
No 25
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=90.22 E-value=0.4 Score=41.45 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=58.7
Q ss_pred CCceEEEEecCCCeEEEEEecC--C-eeEEeEEEEc--cc-hhHHH----HHHHHHHHc-----CCCEEEEeecCCCC--
Q 030836 61 RGGFSLGVDLGLSRTGLALSKG--F-CVRPLTVLKL--RG-EKLEL----QLLEIAQRE-----ETDEFIIGLPKSWD-- 123 (170)
Q Consensus 61 ~~g~iLgID~G~kRiGVAvsD~--~-~a~Pl~~i~~--~~-~~~~~----~L~~li~e~-----~v~~IVVGlPl~~d-- 123 (170)
..+.++|||+|..+|=+++.|. . ... ..++. .+ ....+ .+.+++.+. ++..|.||.|=..|
T Consensus 106 ~~~~~lGIDiGgt~i~~~l~d~~G~il~~--~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~ 183 (429)
T 1z05_A 106 LGWQFLSMRLGRGYLTIALHELGGEVLID--TKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSE 183 (429)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTSCEEEE--EEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEESSEEETT
T ss_pred CCCEEEEEEECCCEEEEEEECCCCCEEEE--EEEcCCCCCHHHHHHHHHHHHHHHHHhcCCCcCceEEEEEeccCcEeCC
Confidence 4568999999999999999993 2 222 12221 11 22233 344555543 35578888885322
Q ss_pred -CCC--Chh--HHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 124 -GSE--TPQ--SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 124 -Gt~--s~~--~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
|.. .+. ... ..+++.|++++ ++||++.+.-.....|+..
T Consensus 184 ~g~v~~~~~l~w~~-~~l~~~L~~~~---~~pV~v~NDa~aaalaE~~ 227 (429)
T 1z05_A 184 QGIVLQMPHYNVKN-LALGPEIYKAT---GLPVFVANDTRAWALAEKL 227 (429)
T ss_dssp TTEEEECSSSBCSS-BCHHHHHHHHH---CSCEEEEEHHHHHHHHHHH
T ss_pred CCeEeecCCCCCCC-CCHHHHHHHHh---CCCEEEechhHHHHHHHHH
Confidence 311 000 000 25667788876 7999998876666666543
No 26
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=89.72 E-value=5.7 Score=31.83 Aligned_cols=84 Identities=21% Similarity=0.104 Sum_probs=54.5
Q ss_pred eEEEEecCCCeEEEEEecCC-eeEEeEEEEcc--chhHHHHHHHHHHHc-----CCCEEEEeecCCCCCCCChhHHHHHH
Q 030836 64 FSLGVDLGLSRTGLALSKGF-CVRPLTVLKLR--GEKLELQLLEIAQRE-----ETDEFIIGLPKSWDGSETPQSNKVRS 135 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~~--~~~~~~~L~~li~e~-----~v~~IVVGlPl~~dGt~s~~~~~vr~ 135 (170)
.|||||--...+++|+.+.. ... ......+ ...+...|.+++++. ++|.|+||.= -|+.+. .+....
T Consensus 2 ~iL~idTs~~~~sval~~~~~~~~-~~~~~~~~h~~~l~~~i~~~L~~a~~~~~did~Iav~~G---PGsftg-lRig~~ 76 (231)
T 2gel_A 2 RILAIDTATEACSVALWNNGTINA-HFELCPREHTQRILPMVQEILAASGASLNEIDALAFGRG---PGSFTG-VRIGIG 76 (231)
T ss_dssp EEEEEECSSSEEEEEEEETTEEEE-EEEECCSCCHHHHHHHHHHHHHHTTCCGGGCSEEEEECC---SSCHHH-HHHHHH
T ss_pred eEEEEECCCcCeEEEEEECCEEEE-EEhhhhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC---CChhHh-HHHHHH
Confidence 59999999999999999743 222 1222111 223556777777765 4799999931 134432 333458
Q ss_pred HHHHHHHhhccCCccEEEEc
Q 030836 136 VAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 136 F~~~L~~~~~~~~lpV~lvD 155 (170)
+++.|...+ ++|++-++
T Consensus 77 ~ak~la~~~---~~Pl~~V~ 93 (231)
T 2gel_A 77 IAQGLALGA---NLPMIGVS 93 (231)
T ss_dssp HHHHHHHTT---TCCEEEEC
T ss_pred HHHHHHHHc---CCCEEEec
Confidence 888888653 89999874
No 27
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=89.25 E-value=1.9 Score=35.79 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=56.9
Q ss_pred eEEEEecCCCeEEEEEecCC-eeEEeEEEEcc--c-hhHHHHHHHHHH----Hc-CCCEEEEeecCCC---CCCCC----
Q 030836 64 FSLGVDLGLSRTGLALSKGF-CVRPLTVLKLR--G-EKLELQLLEIAQ----RE-ETDEFIIGLPKSW---DGSET---- 127 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~~--~-~~~~~~L~~li~----e~-~v~~IVVGlPl~~---dGt~s---- 127 (170)
.++|||+|..+|=+++.|.. .......++.. + ....+.|.++++ ++ .+..|.||.|=.. +|...
T Consensus 25 ~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gigi~~pG~vd~~~g~v~~~~~ 104 (327)
T 4db3_A 25 MYYGFDVGGTKIEFGAFNEKLERVATERVPTPTDDYPLLLETIAGLVAKYDQEFACEGKIGLGLPGMEDADDATVLTVNV 104 (327)
T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEEEEEECCTTCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESEEECTTTCCEEESSS
T ss_pred EEEEEEECCCEEEEEEEeCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcCCccEEEEEeeccEeCCCCEEEcCCC
Confidence 68999999999999999942 11112223221 1 223344444443 33 4678999998432 23211
Q ss_pred hhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHH
Q 030836 128 PQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165 (170)
Q Consensus 128 ~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~ 165 (170)
+... -..+.+.|++++ ++||++.+.-.....|+.
T Consensus 105 ~~~~-~~~l~~~l~~~~---~~pV~v~NDa~aaalgE~ 138 (327)
T 4db3_A 105 PAAK-GKPLRADLEAKI---GRSVKIENDANCFALSEA 138 (327)
T ss_dssp GGGT-TSCHHHHHHHHH---SSCCEEEEHHHHHHHHHH
T ss_pred cccc-CCCHHHHHHHHH---CCCEEEecchhHHHHHHH
Confidence 0001 124567888876 789988877655555543
No 28
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=89.16 E-value=1.7 Score=35.49 Aligned_cols=100 Identities=8% Similarity=0.051 Sum_probs=61.0
Q ss_pred ceEEEEecCCCeEEEEEecCC-eeEEeEEEEcc--c-hhHHHHHHHHHHH-cCCCEEEEeecCCCC---CCC--Chh---
Q 030836 63 GFSLGVDLGLSRTGLALSKGF-CVRPLTVLKLR--G-EKLELQLLEIAQR-EETDEFIIGLPKSWD---GSE--TPQ--- 129 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~~--~-~~~~~~L~~li~e-~~v~~IVVGlPl~~d---Gt~--s~~--- 129 (170)
+.++|||+|..+|=+++.|.. ...-...++.. . ....+.+.+++.+ .++..|-||.|=..| |.. ++.
T Consensus 4 m~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~~l~~ 83 (297)
T 4htl_A 4 MKIAAFDIGGTALKMGVVLPHGEIILTKSAEISGSDGDQILAEMKVFLAENTDVTGIAVSAPGYVNPKTGLITMGGAIRR 83 (297)
T ss_dssp CCEEEEEECSSEEEEEEECTTSCEEEEEEEECSTTCHHHHHHHHHHHHHTCTTCCEEEEEESSEECTTTCEEEECTTCGG
T ss_pred cEEEEEEeCCCeEEEEEECCCCCEEEEEEecCCCCCHHHHHHHHHHHHhhcCCeeEEEEecCcceeCCCCEEEeCCCCCC
Confidence 479999999999999999942 11111222211 1 2345566666654 468999999985333 321 110
Q ss_pred HHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 130 SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 130 ~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
... ..+.+.|++++ ++||++.+.-.....|+.+
T Consensus 84 w~~-~~l~~~l~~~~---~~pV~v~NDa~aaal~E~~ 116 (297)
T 4htl_A 84 FDN-FNLKEWLEAET---GLPVAIENDANCALLAEKW 116 (297)
T ss_dssp GTT-EEHHHHHHHHH---CSCEEEEEHHHHHHHHHHH
T ss_pred ccC-CCHHHHHHHHH---CcCEEEecHHHHHHHHHHH
Confidence 111 24577888876 7999988876655555543
No 29
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=89.15 E-value=1.2 Score=35.71 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=59.1
Q ss_pred eEEEEecCCCeEEEEEecCC-eeEEeEEEEcc----chhHHHHHHHHHHHc--CCCEEEEeecCCCC---CCC--Chh--
Q 030836 64 FSLGVDLGLSRTGLALSKGF-CVRPLTVLKLR----GEKLELQLLEIAQRE--ETDEFIIGLPKSWD---GSE--TPQ-- 129 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~~----~~~~~~~L~~li~e~--~v~~IVVGlPl~~d---Gt~--s~~-- 129 (170)
.++|||+|..+|=+++.|.. ...-...++.. .....+.|.+++++. ++..|.||.|=..| |.. ++.
T Consensus 2 ~~lgidiggt~~~~~l~d~~g~il~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~igi~~pG~vd~~~g~v~~~~~~~ 81 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNLG 81 (289)
T ss_dssp CEEEEEECSSEEEEEEECTTCCEEEEEEEECCSSCCHHHHHHHHHHHHTTTGGGCSEEEEEESSEEETTEEECSSGGGGG
T ss_pred eEEEEEeCCCEEEEEEECCCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEeccceeCCCCEEEeCCCCC
Confidence 58999999999999999832 11111222211 123456777777653 36689999984322 211 111
Q ss_pred -HHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHH
Q 030836 130 -SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165 (170)
Q Consensus 130 -~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~ 165 (170)
.+. ..+.+.|++++ ++||++.+.-.....|+.
T Consensus 82 ~w~~-~~l~~~l~~~~---~~pv~v~NDa~aaa~~e~ 114 (289)
T 2aa4_A 82 GLLH-FPLVKTLEQLT---NLPTIAINDAQAAAWAEF 114 (289)
T ss_dssp GGTT-CCHHHHHHHHH---CSCEEEEEHHHHHHHHHH
T ss_pred cccC-CChHHHHHHHH---CCCEEEechHHHHHHHHH
Confidence 111 24577888876 789998887666555553
No 30
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=88.27 E-value=2.9 Score=33.93 Aligned_cols=81 Identities=10% Similarity=-0.073 Sum_probs=47.7
Q ss_pred EEEEecCCCeEEEEEecCC-eeEEeEEEEc--c---c-hhHHHHHHHHHHH------cCCCEEEEeecCCCCCCCChhHH
Q 030836 65 SLGVDLGLSRTGLALSKGF-CVRPLTVLKL--R---G-EKLELQLLEIAQR------EETDEFIIGLPKSWDGSETPQSN 131 (170)
Q Consensus 65 iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~--~---~-~~~~~~L~~li~e------~~v~~IVVGlPl~~dGt~s~~~~ 131 (170)
++|||.|.-+|=+++.| . ........+. . . +...+.|.+.+++ .++..|.||.|=-. ...
T Consensus 2 ~lgiDiGGT~~~~~l~d-~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~~igig~pG~~--~~~---- 74 (291)
T 1zbs_A 2 ILIGDSGSTKTDWCIAK-EGKSLGRFQTSGINPFQQDRNEIDTALRSEVLPAIGQKASSIRAVYFYGAGCT--PAK---- 74 (291)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEEECCCTTTSCHHHHHHHHTTTTHHHHTTSTTTCCEEEEEETTCC--TTT----
T ss_pred EEEEEeCccceEEEEEe-CCeEEEEEECCCCCcccCCHHHHHHHHHHHHHHHhCCCcccccEEEEECCCCC--hHH----
Confidence 79999999999999988 3 1111112211 0 1 1233444444432 35888999998321 111
Q ss_pred HHHHHHHHHHHhhccCC--ccEEEEcC
Q 030836 132 KVRSVAGRLAVRAAERG--WRVYLLDE 156 (170)
Q Consensus 132 ~vr~F~~~L~~~~~~~~--lpV~lvDE 156 (170)
-..+.+.|++++ + .||...+-
T Consensus 75 -~~~l~~~l~~~~---~~~~pv~v~ND 97 (291)
T 1zbs_A 75 -APMLNEALDSML---PHCDRIEVAGD 97 (291)
T ss_dssp -HHHHHHHHHHHS---TTCSEEEEECH
T ss_pred -HHHHHHHHHHhc---CCCCcEEEeCc
Confidence 136777888775 4 58877653
No 31
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=88.26 E-value=1.4 Score=35.25 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=58.9
Q ss_pred ceEEEEecCCCeEEEEEecC---CeeEEeEEEEcc---c-hhHHHHHHHHHHHc--------CCCEEEEeecCCC-CCCC
Q 030836 63 GFSLGVDLGLSRTGLALSKG---FCVRPLTVLKLR---G-EKLELQLLEIAQRE--------ETDEFIIGLPKSW-DGSE 126 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~---~~a~Pl~~i~~~---~-~~~~~~L~~li~e~--------~v~~IVVGlPl~~-dGt~ 126 (170)
+.++|+|+|..++=+++.|- ....-...++.. . ....+.+.+++++. .+..|.||.|=.. +|..
T Consensus 12 ~~~lgidiggt~i~~~l~dl~~g~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~igi~~pG~v~~g~v 91 (267)
T 1woq_A 12 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAELSARPEAPAAGSPVGVTFPGIIQHGVV 91 (267)
T ss_dssp CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTTCCCTTCCEEEEESSCEETTEE
T ss_pred CEEEEEEECCCEEEEEEEECCCCeEEEEEEecCCCccCCHHHHHHHHHHHHHHHHHhccccCccceEEEEccceEcCCEE
Confidence 46999999999999999983 222111222211 1 22334455544332 3457999998432 3422
Q ss_pred C--hh----HHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 127 T--PQ----SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 127 s--~~----~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
. +. ... ..+.+.|++++ ++||++.+.-.....|+..
T Consensus 92 ~~~~~l~~~w~~-~~l~~~l~~~~---~~pV~v~NDanaaalaE~~ 133 (267)
T 1woq_A 92 HSAANVDKSWLN-TDIDALLTARL---GRPVEVINDADAAGLAEAR 133 (267)
T ss_dssp CCCTTSCGGGTT-CBHHHHHHHHH---TSCEEEEEHHHHHHHHHHH
T ss_pred EeCCCCCCCCCC-CCHHHHHHHHH---CCCEEEeehhHHHHHHHHH
Confidence 1 10 111 25677888886 7999998887666666644
No 32
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=87.19 E-value=5 Score=33.60 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=51.6
Q ss_pred eEEEEecCCCeEEEEEecC-C-eeEEeEEEEccc-------------hhHHHHHHHHHHH-----cCCCEEEEee-cCCC
Q 030836 64 FSLGVDLGLSRTGLALSKG-F-CVRPLTVLKLRG-------------EKLELQLLEIAQR-----EETDEFIIGL-PKSW 122 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~-~-~a~Pl~~i~~~~-------------~~~~~~L~~li~e-----~~v~~IVVGl-Pl~~ 122 (170)
.+||||-+...+++|+.+. . .+.-...+.++. ..+...+++++++ .++|.|+++. |
T Consensus 2 ~iLgIdts~~~~~val~~~g~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~~did~Ia~~~GP--- 78 (330)
T 2ivn_A 2 LALGIEGTAHTLGIGIVSEDKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQGP--- 78 (330)
T ss_dssp CEEEEECSSSEEEEEEECSSCEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEEEES---
T ss_pred EEEEEEccCCCeEEEEEECCEEEEEEEEEeecccCCcCchhhHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCC---
Confidence 5999999999999999974 2 322222111110 1122356666655 4688999852 2
Q ss_pred CCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 123 dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
|..+. -+....|++.|...+ ++|++.+++-
T Consensus 79 -G~~~~-lrvg~~~ak~la~~~---~~pl~~v~h~ 108 (330)
T 2ivn_A 79 -GLGPA-LRVVATAARALAVKY---RKPIVGVNHC 108 (330)
T ss_dssp -SCHHH-HHHHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred -CchHH-HHHHHHHHHHHHHHc---CCCEEeeCcH
Confidence 33222 133346888887654 7899988763
No 33
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=86.89 E-value=0.42 Score=39.77 Aligned_cols=99 Identities=16% Similarity=-0.023 Sum_probs=55.8
Q ss_pred ceEEEEecCCCeEEEEEecCC-eeEEeEEEEcc-c-hhHHHH----HHHHHHH-----cCCCEEEEeecCCCC---CCCC
Q 030836 63 GFSLGVDLGLSRTGLALSKGF-CVRPLTVLKLR-G-EKLELQ----LLEIAQR-----EETDEFIIGLPKSWD---GSET 127 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~-~a~Pl~~i~~~-~-~~~~~~----L~~li~e-----~~v~~IVVGlPl~~d---Gt~s 127 (170)
+.+||||+|..+|=+++.|.. .......++.. . ....+. +.+++.+ .++..|.||.|=..| |...
T Consensus 30 ~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~pG~vd~~~g~v~ 109 (343)
T 2yhw_A 30 LSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERINLILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVL 109 (343)
T ss_dssp EEEEEEEECSSEEEEEEEETTSCEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEESSEEETTTTEEE
T ss_pred cEEEEEEECCCEEEEEEECCCCcEEEEEEEcCCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEEecccCEeCCCCEEE
Confidence 369999999999999999832 11111122211 1 222333 3344332 347788999885322 3110
Q ss_pred --h----hHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHH
Q 030836 128 --P----QSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165 (170)
Q Consensus 128 --~----~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~ 165 (170)
+ .... ..+.+.|++++ ++||++.+.-.....|+.
T Consensus 110 ~~~~~~~~w~~-~~l~~~l~~~~---~~pv~v~NDa~aaal~E~ 149 (343)
T 2yhw_A 110 HSTKLIQEWNS-VDLRTPLSDTL---HLPVWVDNDGNCAALAER 149 (343)
T ss_dssp ECCTTSSSCSS-EECHHHHHHHH---CSCEEEEEHHHHHHHHHH
T ss_pred eCCcCCCCCcC-CCHHHHHHHHH---CCCEEEechhHHHHHHHH
Confidence 0 0000 14567787776 789999887666655554
No 34
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=86.41 E-value=7.4 Score=30.58 Aligned_cols=84 Identities=20% Similarity=0.207 Sum_probs=44.4
Q ss_pred CceEEEEecCCCeEEEEEecCC---eeE---EeEEEEccc----h---hHHHHHHHHHHH---cCCCEEEEeecCCCCCC
Q 030836 62 GGFSLGVDLGLSRTGLALSKGF---CVR---PLTVLKLRG----E---KLELQLLEIAQR---EETDEFIIGLPKSWDGS 125 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD~~---~a~---Pl~~i~~~~----~---~~~~~L~~li~e---~~v~~IVVGlPl~~dGt 125 (170)
...++|||.|+..|=+++.|.. ... +-..+.... . ..+..+.+.+.. ..+..+|+..|......
T Consensus 27 ~~~~~gIDiGS~s~k~vi~~~~~~~l~~~~~~~~~l~~g~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~ 106 (272)
T 3h1q_A 27 PPYKVGVDLGTADIVLVVTDQEGIPVAGALKWASVVKDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGR 106 (272)
T ss_dssp SCCEEEEECCSSEEEEEEECTTCCEEEEEEEECCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---
T ss_pred CCEEEEEEcccceEEEEEECCCCcEEEEEeecccccCCCEEEcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHH
Confidence 3579999999999999998742 111 111111100 1 112333333332 35678999999765432
Q ss_pred CChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 126 ~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
. +++.+...+.+ ++++..+.
T Consensus 107 ~-------~~~~~~~~~~~---g~~~~~i~ 126 (272)
T 3h1q_A 107 N-------AEACGHVVAGA---GLELVTLV 126 (272)
T ss_dssp C-------TTHHHHHHHHT---TCEEEEEE
T ss_pred H-------HHHHHHHHHHc---CCeeeecc
Confidence 2 23344444443 77766544
No 35
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=85.50 E-value=13 Score=29.81 Aligned_cols=90 Identities=17% Similarity=0.027 Sum_probs=57.9
Q ss_pred ceEEEEecCCCeEEEEEecCCeeEEeEEEE--c-cchhHHHHHHHHHHHc-----CCCEEEEeecCCCCCCCChhHHHHH
Q 030836 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLK--L-RGEKLELQLLEIAQRE-----ETDEFIIGLPKSWDGSETPQSNKVR 134 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~~a~Pl~~i~--~-~~~~~~~~L~~li~e~-----~v~~IVVGlPl~~dGt~s~~~~~vr 134 (170)
-+|||||--+..++||+.+..... -.... + ..+.+...|.+++++. ++|.|+||.= -|+.+. -+-.-
T Consensus 12 ~~iLaidTS~~~~sval~~~~~~l-~~~~~~~r~Hse~L~p~i~~~L~~a~~~~~dld~Iav~~G---PGsfTG-lRiG~ 86 (218)
T 2a6a_A 12 HMNVLALDTSQRIRIGLRKGEDLF-EISYTGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGIG---PGGLTG-LRVGI 86 (218)
T ss_dssp -CEEEEEECSSSEEEEEEETTEEE-EEEEESCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEECC---SSCHHH-HHHHH
T ss_pred ceEEEEEcCCcCeEEEEEECCEEE-EEEecchHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC---CCchHh-HHHHH
Confidence 479999999999999999843211 11221 1 1233456677777653 5799999931 145444 44456
Q ss_pred HHHHHHHHhhccCCccEEEEcCcccHHHHH
Q 030836 135 SVAGRLAVRAAERGWRVYLLDEHRTSAEAV 164 (170)
Q Consensus 135 ~F~~~L~~~~~~~~lpV~lvDER~TT~eA~ 164 (170)
.+++.|+..+ ++|++-+ +|.+|.
T Consensus 87 ~~Ak~La~~~---~iPl~gV----s~l~a~ 109 (218)
T 2a6a_A 87 ATVVGLVSPY---DIPVAPL----NSFEMT 109 (218)
T ss_dssp HHHHHHHGGG---TCCEEEE----CHHHHH
T ss_pred HHHHHHHHHc---CCCEEEe----CcHHHH
Confidence 8899998764 8999876 455543
No 36
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=85.20 E-value=8.9 Score=31.58 Aligned_cols=80 Identities=10% Similarity=0.115 Sum_probs=47.3
Q ss_pred eEEEEecCCCeEEEEEecCCeeEEeEEEEc---cch-hHHHHHHHHHHHc-----CCCEEEEeecCCCCCCCChhHHHHH
Q 030836 64 FSLGVDLGLSRTGLALSKGFCVRPLTVLKL---RGE-KLELQLLEIAQRE-----ETDEFIIGLPKSWDGSETPQSNKVR 134 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~~~a~Pl~~i~~---~~~-~~~~~L~~li~e~-----~v~~IVVGlPl~~dGt~s~~~~~vr 134 (170)
++|+||+|..+|=+|+-|+........+.. ++. +....+.++++.+ +++.++|--+ .| ....
T Consensus 1 MlL~IDIGNT~ik~gl~~~~~l~~~~r~~T~~~~t~de~~~~l~~ll~~~~~~~~~i~~iiISSV-------vp--~~~~ 71 (268)
T 2h3g_X 1 MIFVLDVGNTNAVLGVFEEGELRQHWRMETDRHKTEDEYGMLVKQLLEHEGLSFEDVKGIIVSSV-------VP--PIMF 71 (268)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCGGGCCEEEEEES-------CH--HHHH
T ss_pred CEEEEEECcCcEEEEEEECCEEEEEEEecCCCcCCHHHHHHHHHHHHHHcCCCcccCcEEEEEcc-------Ch--hHHH
Confidence 489999999999999998642222222221 122 3345677888766 4788988743 23 2223
Q ss_pred HHHHHHHHhhccCCccEEEEc
Q 030836 135 SVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 135 ~F~~~L~~~~~~~~lpV~lvD 155 (170)
.+.+.+++.+ ++++++++
T Consensus 72 ~l~~~~~~~~---~~~~~~v~ 89 (268)
T 2h3g_X 72 ALERMCEKYF---KIKPLVVG 89 (268)
T ss_dssp HHHHHHHHHT---CCCCEECS
T ss_pred HHHHHHHHHh---CCCeEEEc
Confidence 4444555543 55555553
No 37
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=84.78 E-value=11 Score=31.73 Aligned_cols=88 Identities=9% Similarity=0.101 Sum_probs=53.4
Q ss_pred CCceEEEEecCCCeEEEEEecC--CeeEEeEEEEc-------------cchhHHHHHHHHHHH-----cCCCEEEEeecC
Q 030836 61 RGGFSLGVDLGLSRTGLALSKG--FCVRPLTVLKL-------------RGEKLELQLLEIAQR-----EETDEFIIGLPK 120 (170)
Q Consensus 61 ~~g~iLgID~G~kRiGVAvsD~--~~a~Pl~~i~~-------------~~~~~~~~L~~li~e-----~~v~~IVVGlPl 120 (170)
..+.|||||--..-+++|+.+. +.+.-...+.+ ....+...+++.+++ .++|.|+|+.=
T Consensus 4 ~~M~iLgIdts~~~~svAl~~~~~i~~~~~~~~~~~~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~Iav~~g- 82 (334)
T 3eno_A 4 DPMIVLGLEGTAHTISCGIIDESRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFSMG- 82 (334)
T ss_dssp CCCEEEEEECSSSEEEEEEEESSCCCEEEEEECCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEECS-
T ss_pred cCceEEEEECCCcCeEEEEEECCEEEEEEEEeeccccCCcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC-
Confidence 3468999999999999999984 23322222210 011223456666655 46899999930
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 121 ~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
-|..+ --+.-..+++.|+..+ ++|++.++
T Consensus 83 --PG~~t-~lrvg~~~ak~La~~~---~~Pl~~v~ 111 (334)
T 3eno_A 83 --PGLAP-SLRVTATAARTISVLT---GKPIIGVN 111 (334)
T ss_dssp --SSCHH-HHHHHHHHHHHHHHHH---TCCCEEEC
T ss_pred --CCCcc-hHHHHHHHHHHHhhcc---CCCeEEec
Confidence 12222 2233446777787664 78999885
No 38
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Probab=83.46 E-value=1.9 Score=34.68 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=37.8
Q ss_pred ceEEEEecCCCeEEEEEecCCeeEEeEEEEcc---c-hhHHHHHHHHHHHcCCCEEEEeecCC
Q 030836 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR---G-EKLELQLLEIAQREETDEFIIGLPKS 121 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~~a~Pl~~i~~~---~-~~~~~~L~~li~e~~v~~IVVGlPl~ 121 (170)
+.++|+|+|..+|=++-.++.. ...++.. . ....+.+.++++++++..|-||.|=.
T Consensus 6 ~~~lgiDIGGT~i~~~d~~g~~---~~~~~t~~~~~~~~~~~~i~~~i~~~~i~gigi~~pG~ 65 (226)
T 3lm2_A 6 QTVLAIDIGGSHVKIGLSTDGE---ERKVESGKTMTGPEMVAAVTAMAKDMTYDVIAMGYPGP 65 (226)
T ss_dssp CCEEEEEECSSEEEEEETTTCC---EEEEECCTTCCHHHHHHHHHHHTTTCCCSEEEEEESSC
T ss_pred CEEEEEEECCCEEEEEECCCCE---EEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeE
Confidence 4799999999988864333332 1222211 1 23467888888888999999999843
No 39
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=82.55 E-value=6 Score=32.66 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=57.5
Q ss_pred CceEEEEecCCCeEEEEEec-CC-eeEEeEEEEccc-hhHHHHHHHHHHHc--CCCEEEEeecCCCCCC-C----ChhHH
Q 030836 62 GGFSLGVDLGLSRTGLALSK-GF-CVRPLTVLKLRG-EKLELQLLEIAQRE--ETDEFIIGLPKSWDGS-E----TPQSN 131 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD-~~-~a~Pl~~i~~~~-~~~~~~L~~li~e~--~v~~IVVGlPl~~dGt-~----s~~~~ 131 (170)
.+.++|+|+|..+|=+|+.| .. ...-...++... ....+.+.+++++. ++..|.||.|=-.|.. . -+. .
T Consensus 13 ~~~~lgiDiGGT~i~~~l~dl~~g~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~gigi~~pG~vd~~~~~~~nl~w-~ 91 (332)
T 1sz2_A 13 TKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTW-A 91 (332)
T ss_dssp -CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHSCCCCCEEEEEESSCCCSSEECCSSSCC-C
T ss_pred CCEEEEEEechhheEEEEEECCCCcEEEEEEecCCCcCCHHHHHHHHHHhcCCCccEEEEEEeCceeCCEEeeeCCCC-c
Confidence 46799999999999999987 32 111122333221 23456677777654 5889999998544321 1 011 1
Q ss_pred HHHHHHHHHHHhhccCCcc-EEEEcCcccHHHHH
Q 030836 132 KVRSVAGRLAVRAAERGWR-VYLLDEHRTSAEAV 164 (170)
Q Consensus 132 ~vr~F~~~L~~~~~~~~lp-V~lvDER~TT~eA~ 164 (170)
+ . .+.|++++ ++| |++.+.-..-.-|+
T Consensus 92 -~-~-~~~l~~~~---~~p~V~v~NDanaaalgE 119 (332)
T 1sz2_A 92 -F-S-IAEMKKNL---GFSHLEIINDFTAVSMAI 119 (332)
T ss_dssp -E-E-HHHHHHHH---TCSEEEEEEHHHHHHHHG
T ss_pred -C-C-HHHHHHHh---CCCcEEEEeCHhHHhccc
Confidence 2 2 35677775 788 88877654443333
No 40
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=77.82 E-value=12 Score=30.39 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=35.5
Q ss_pred ceEEEEecCCCeEEEEEecCC--eeE-EeEEEEccc-hhHHHHHHHHHH--HcCCCEEEEeec
Q 030836 63 GFSLGVDLGLSRTGLALSKGF--CVR-PLTVLKLRG-EKLELQLLEIAQ--REETDEFIIGLP 119 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~--~a~-Pl~~i~~~~-~~~~~~L~~li~--e~~v~~IVVGlP 119 (170)
.++|+||+|..+|=+|+-|+. ... -+.+-..++ ++....+.++++ .++++.++|.-+
T Consensus 3 ~M~L~IDIGNT~ik~gl~~~~~l~~~~r~~T~~~~t~de~~~~l~~l~~~~~~~i~~i~IsSV 65 (249)
T 3bex_A 3 PMYLLVDVGNTHSVFSITEDGKTFRRWRLSTGVFQTEDELFSHLHPLLGDAMREIKGIGVASV 65 (249)
T ss_dssp CEEEEEEECSSEEEEEEESSSSSCEEEEEECCTTCCHHHHHHHHHHHHGGGGGGEEEEEEEES
T ss_pred ceEEEEEECCCeEEEEEEECCEEEEEEEecCCCCCCHHHHHHHHHHHHhhccccCCEEEEEcC
Confidence 479999999999999999853 221 111111112 233456666664 356788888843
No 41
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=77.81 E-value=19 Score=31.86 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=51.4
Q ss_pred CceEEEEecCCCeEEEEEecC--C-eeEEeEEEEc-----------cc--hhHHHHHHHHHHH---cCCCEEEEeecCCC
Q 030836 62 GGFSLGVDLGLSRTGLALSKG--F-CVRPLTVLKL-----------RG--EKLELQLLEIAQR---EETDEFIIGLPKSW 122 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD~--~-~a~Pl~~i~~-----------~~--~~~~~~L~~li~e---~~v~~IVVGlPl~~ 122 (170)
.+.+||||--...+++|+.+. . .+.-...... +. ..+...+.+++++ .++|.|+|+.=
T Consensus 5 ~m~iL~i~ts~~~~~~al~~~~~~~~~~~~~~~~~~~gg~~p~~a~~~h~~~l~~~i~~~l~~~~~~~id~ia~~~g--- 81 (540)
T 3en9_A 5 PMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFSQG--- 81 (540)
T ss_dssp SCEEEEEECSSSEEEEEEEETTSCEEEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSCGGGCCEEEEEEE---
T ss_pred cceEEEEEcCccceEEEEEECCCeEEEEEEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCHhHCcEEEEecC---
Confidence 368999999999999999984 2 2222222210 00 1122334444443 57999999841
Q ss_pred CCCCChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 123 dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
-|..+ --+.--.+|+.|+... ++|++-|+
T Consensus 82 PG~~~-~l~vg~~~ak~la~~~---~~p~~~v~ 110 (540)
T 3en9_A 82 PGLGP-SLRVTATVARTLSLTL---KKPIIGVN 110 (540)
T ss_dssp SSCHH-HHHHHHHHHHHHHHHH---TCCEEEEE
T ss_pred CCchh-hHHHHHHHHHHHHHHh---CCCeeEec
Confidence 12222 1233457778887765 78999874
No 42
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=74.49 E-value=9.7 Score=26.37 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
....+.|.++++++++|.||+|-. . | ...+ .-..++++-.. ...||..+-+
T Consensus 88 g~~~~~I~~~a~~~~~dliV~G~~-~--~---~~~~-lgs~~~~vl~~---~~~pVlvv~~ 138 (141)
T 1jmv_A 88 GDLGQVLSDAIEQYDVDLLVTGHH-Q--D---FWSK-LMSSTRQVMNT---IKIDMLVVPL 138 (141)
T ss_dssp ECHHHHHHHHHHHTTCCEEEEEEC-C--C---CHHH-HHHHHHHHHTT---CCSEEEEEEC
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCC-C--c---hhhh-hcchHHHHHhc---CCCCEEEeeC
Confidence 356778999999999999999964 2 1 1222 34556666555 3689988753
No 43
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=74.02 E-value=2 Score=36.27 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.1
Q ss_pred CceEEEEecCCCeEEEEEec
Q 030836 62 GGFSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD 81 (170)
...++|||+|+..+++|+.+
T Consensus 12 ~~~vvGIDlGTt~s~va~~~ 31 (409)
T 4gni_A 12 ERVVIGITFGNSNSSIAHTV 31 (409)
T ss_dssp -CCEEEEEECSSEEEEEEEE
T ss_pred CCcEEEEEcCCCeEEEEEEe
Confidence 35799999999999999864
No 44
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=73.74 E-value=9 Score=32.10 Aligned_cols=99 Identities=10% Similarity=0.048 Sum_probs=53.8
Q ss_pred CceEEEEecCCCeEEEEEecC----Ce-eEEeEE-EEc-cchhHHHHHHHHHHHc------CCCEEEEeecCCCC-CCCC
Q 030836 62 GGFSLGVDLGLSRTGLALSKG----FC-VRPLTV-LKL-RGEKLELQLLEIAQRE------ETDEFIIGLPKSWD-GSET 127 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD~----~~-a~Pl~~-i~~-~~~~~~~~L~~li~e~------~v~~IVVGlPl~~d-Gt~s 127 (170)
.+.+||+|+|..+|=+++.|. .. ...... .+. ......+.|.+++++. ++..|.||.|=-.| |...
T Consensus 28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~il~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gigi~~pG~vd~g~v~ 107 (373)
T 2q2r_A 28 APLTFVGDVGGTSARMGFVREGKNDSVHACVTRYSMKRKDITEIIEFFNEIIELMPASVMKRVKAGVINVPGPVTGGAVG 107 (373)
T ss_dssp SCEEEEEEECSSEEEEEEEEECGGGCEEEEEEEEECTTCBGGGHHHHHHHHHHHSCHHHHTTEEEEEEEESSCEETTTEE
T ss_pred CCeEEEEEEccccEEEEEEecccCCCccEEEEeeecCCCCHHHHHHHHHHHHHHHhhcccccccEEEEEeeccccCCEEe
Confidence 568999999999999999874 31 111111 211 1234456677766543 46789999985433 3211
Q ss_pred -hh--HHHHHHHHHHHHHhhccCCc-cEEEEcCcccHHHH
Q 030836 128 -PQ--SNKVRSVAGRLAVRAAERGW-RVYLLDEHRTSAEA 163 (170)
Q Consensus 128 -~~--~~~vr~F~~~L~~~~~~~~l-pV~lvDER~TT~eA 163 (170)
+. ...+-.+.+.++++ +++ ||++.+.-....-|
T Consensus 108 ~~~~~~~~~~~l~~~l~~~---~~~~pv~v~NDa~aaalg 144 (373)
T 2q2r_A 108 GPFNNLKGIARLSDYPKAL---FPPGHSAILNDLEAGGFG 144 (373)
T ss_dssp CCCSSSBSCEEGGGSCTTT---SCTTSEEEEEHHHHHHHH
T ss_pred ccCCCCCCcCCHHHHHHHh---cCCCCEEEEccHhHHhcc
Confidence 00 00000223333333 367 88887765444333
No 45
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=72.27 E-value=5.3 Score=32.36 Aligned_cols=83 Identities=13% Similarity=0.020 Sum_probs=38.3
Q ss_pred EEEEecCCCeEEEEEec-CC-eeEEe-EEEEc-c--chhHHH----HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHH
Q 030836 65 SLGVDLGLSRTGLALSK-GF-CVRPL-TVLKL-R--GEKLEL----QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVR 134 (170)
Q Consensus 65 iLgID~G~kRiGVAvsD-~~-~a~Pl-~~i~~-~--~~~~~~----~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr 134 (170)
++|||.|.-+|=+++.| +. ...-. .+... . .+...+ .+.+++...++..|.||.|=- + .... .
T Consensus 2 ~lgiDiGGT~i~~~l~d~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~igig~pG~-~-~~~~-----~ 74 (291)
T 1zxo_A 2 ILIADSGSTKTDWCVVLNGAVIKRLGTKGINPFFQSEEEIQQKLTASLLPQLPEGKFNAVYFYGAGC-T-PEKA-----P 74 (291)
T ss_dssp --CEECCTTCEEEEEECSSSEEEEEEECCCCTTTSCSTTTTTTTTC-------------CEEECTTC-C-TTTT-----H
T ss_pred EEEEEeccccEEEEEEcCCeEEEEEECCCCCcccCCHHHHHHHHHHHHHHhcCcccccEEEEEcCCC-C-HHHH-----H
Confidence 78999999999999987 22 22211 11000 0 111222 333334445688899999832 1 1111 2
Q ss_pred HHHHHHHHhhccCC--ccEEEEcCc
Q 030836 135 SVAGRLAVRAAERG--WRVYLLDEH 157 (170)
Q Consensus 135 ~F~~~L~~~~~~~~--lpV~lvDER 157 (170)
.+.+.|++++ + .||...+--
T Consensus 75 ~l~~~l~~~~---~~~~pv~v~NDa 96 (291)
T 1zxo_A 75 VLRRAIADSL---PVIGNIKANSDM 96 (291)
T ss_dssp HHHHHHHHHS---CCCSCCEEECSH
T ss_pred HHHHHHHHhc---CCCceEEEECcH
Confidence 6777787775 5 588776643
No 46
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=72.11 E-value=8 Score=28.26 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
....+.|.++++++++|.||+|- .|...-.....-..++++-... .+||..+-.
T Consensus 105 G~~~~~I~~~a~~~~~DLIV~G~----~g~~~~~~~~lGSva~~vl~~a---~~PVlvV~~ 158 (163)
T 1tq8_A 105 GAPVDALVNLADEEKADLLVVGN----VGLSTIAGRLLGSVPANVSRRA---KVDVLIVHT 158 (163)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEEC----CCCCSHHHHHTBBHHHHHHHHT---TCEEEEECC
T ss_pred CCHHHHHHHHHHhcCCCEEEECC----CCCCcccceeeccHHHHHHHhC---CCCEEEEeC
Confidence 35678899999999999999994 2332211112224456666654 689998854
No 47
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=71.93 E-value=2.2 Score=38.38 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.5
Q ss_pred CCceEEEEecCCCeEEEEEec
Q 030836 61 RGGFSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 61 ~~g~iLgID~G~kRiGVAvsD 81 (170)
..+.++|||+|+..++||+.+
T Consensus 2 ~m~~~iGIDlGTt~s~va~~~ 22 (554)
T 1yuw_A 2 SKGPAVGIDLGTTYSCVGVFQ 22 (554)
T ss_dssp CSCCCEEEEECSSEEEEEEEC
T ss_pred CCCCEEEEEeCcccEEEEEEE
Confidence 345789999999999999987
No 48
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=71.29 E-value=8.7 Score=27.92 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
....+.|.++++++++|.||+|-. |..+-.....-..++++-... .+||..+-..
T Consensus 110 G~~~~~I~~~a~~~~~DLIVmG~~----g~~~~~~~~~Gsva~~vl~~a---~~pVlvv~~~ 164 (175)
T 2gm3_A 110 GDPKDVICQEVKRVRPDFLVVGSR----GLGRFQKVFVGTVSAFCVKHA---ECPVMTIKRN 164 (175)
T ss_dssp SCHHHHHHHHHHHHCCSEEEEEEC----CCC--------CHHHHHHHHC---SSCEEEEECC
T ss_pred CCHHHHHHHHHHHhCCCEEEEeCC----CCChhhhhhcCchHHHHHhCC---CCCEEEEcCC
Confidence 346788999999999999999953 222111112234556666653 6899888543
No 49
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=70.83 E-value=2.1 Score=35.91 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=17.4
Q ss_pred CceEEEEecCCCeEEEEEec
Q 030836 62 GGFSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD 81 (170)
.+.++|||+|+..+++|+.+
T Consensus 22 ~~~viGID~GTt~s~va~~~ 41 (404)
T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQ 41 (404)
T ss_dssp -CCCEEEEECSSEEEEEEEE
T ss_pred cCCEEEEEcCCccEEEEEEE
Confidence 35799999999999999876
No 50
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=69.73 E-value=6.2 Score=28.20 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
....+.|.++++++++|.||+|-.-. .+- . ....-..++++-.+. .+||..+-..
T Consensus 106 G~~~~~I~~~a~~~~~dlIV~G~~g~-~~~-~--~~~~GSv~~~vl~~~---~~pVlvv~~~ 160 (162)
T 1mjh_A 106 GIPHEEIVKIAEDEGVDIIIMGSHGK-TNL-K--EILLGSVTENVIKKS---NKPVLVVKRK 160 (162)
T ss_dssp ECHHHHHHHHHHHTTCSEEEEESCCS-SCC-T--TCSSCHHHHHHHHHC---CSCEEEECCC
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCC-CCc-c--ceEecchHHHHHHhC---CCCEEEEeCC
Confidence 35678899999999999999995421 111 0 001123445555553 6899888643
No 51
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=68.81 E-value=2.1 Score=35.73 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=16.5
Q ss_pred eEEEEecCCCeEEEEEec
Q 030836 64 FSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD 81 (170)
.++|||+|+..+++|+.+
T Consensus 3 ~~vGIDlGTt~s~va~~~ 20 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMD 20 (383)
T ss_dssp CCCEEECCSSEEEEEEEE
T ss_pred cEEEEEcCCCCEEEEEEE
Confidence 589999999999999986
No 52
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=68.50 E-value=2.9 Score=34.76 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=17.3
Q ss_pred ceEEEEecCCCeEEEEEec
Q 030836 63 GFSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD 81 (170)
+.++|||+|+..+++|+.+
T Consensus 18 ~~viGID~GTt~s~va~~~ 36 (394)
T 3qfu_A 18 GTVIGIDLGTTYSCVAVMK 36 (394)
T ss_dssp CSCEEEEECSSEEEEEEEC
T ss_pred CCEEEEEeCcCcEEEEEEE
Confidence 4689999999999999886
No 53
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=68.27 E-value=6.2 Score=27.71 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
....+.|.++++++++|.||+|-. |..+-. ...-..++.+-... ..||..+-
T Consensus 95 g~~~~~I~~~a~~~~~dliV~G~~----~~~~~~-~~~Gs~~~~vl~~~---~~pVlvv~ 146 (150)
T 3tnj_A 95 GEPREEIIRIAEQENVDLIVVGSH----GRHGLA-LLLGSTANSVLHYA---KCDVLAVR 146 (150)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEEEC-------------CCCHHHHHHHHC---SSEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCEEEEecC----CCCCcC-eEecchHHHHHHhC---CCCEEEEe
Confidence 356688999999999999999953 221111 11223455665553 68988774
No 54
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=68.03 E-value=13 Score=33.03 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=26.7
Q ss_pred ccccccchhhhccccccccccCCCCCceEEEEecCCCeEEEEEec
Q 030836 37 RIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~iLgID~G~kRiGVAvsD 81 (170)
.+++++|--.-.|+... .|.+||||+|.-.+=+++.|
T Consensus 43 ~~~mlpt~v~~~P~G~E--------~G~~laiDlGGTnirv~lV~ 79 (457)
T 2yhx_A 43 SIPMVPGWVLKQVSGAQ--------AGSFLAIVMGGGDLEVILIS 79 (457)
T ss_dssp SSCCEECCCCCCCCSCC--------CEEEEEEEECSSEEEEEEEE
T ss_pred CCccCccccCCCCCCCc--------cceEEEEEeCCCeEEEEEEE
Confidence 36776555432244443 47899999999999999987
No 55
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=67.98 E-value=29 Score=28.67 Aligned_cols=51 Identities=12% Similarity=-0.013 Sum_probs=31.8
Q ss_pred CceEEEEecCCCeEEEEEec-CCeeEEeEEEEccchhHHHHHHHHHH---HcCCCEEEEe
Q 030836 62 GGFSLGVDLGLSRTGLALSK-GFCVRPLTVLKLRGEKLELQLLEIAQ---REETDEFIIG 117 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD-~~~a~Pl~~i~~~~~~~~~~L~~li~---e~~v~~IVVG 117 (170)
..++|.||+|..+|=+|+-| +........+. +. +++...+. .+.++.+++.
T Consensus 22 ~~M~L~IDiGNT~ik~g~~~~~~~~~~~~r~~--t~---de~~~~l~~~~~~~i~~viis 76 (271)
T 2f9w_A 22 ASMILELDCGNSLIKWRVIEGAARSVAGGLAE--SD---DALVEQLTSQQALPVRACRLV 76 (271)
T ss_dssp -CEEEEEEECSSCEEEEEEETTTEEEEEEEES--SH---HHHHHHHHHTTTSCEEEEEEE
T ss_pred cCcEEEEEeCCCeeEEEEEeCCCEEEEEEEec--CH---HHHHHHHhcCcccCCCEEEEE
Confidence 35899999999999999988 54333323332 22 13333332 4567888887
No 56
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=67.29 E-value=5.8 Score=27.58 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
....+.|.++++++++|.||+|-.-.. +-.. ...-..++++-... ++||..+
T Consensus 85 g~~~~~I~~~a~~~~~dliV~G~~~~~-~~~~---~~~Gs~~~~vl~~~---~~pVlvv 136 (137)
T 2z08_A 85 GVPAEAILQAARAEKADLIVMGTRGLG-ALGS---LFLGSQSQRVVAEA---PCPVLLV 136 (137)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEESSCTT-CCSC---SSSCHHHHHHHHHC---SSCEEEE
T ss_pred cCHHHHHHHHHHHcCCCEEEECCCCCc-hhhh---hhhccHHHHHHhcC---CCCEEEe
Confidence 356788999999999999999964321 1110 01123445555553 6788765
No 57
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=66.79 E-value=31 Score=28.35 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=36.5
Q ss_pred ceEEEEecCCCeEEEEEec-C-CeeEEeEEE--Ec----c-----chhHHHHHHHHHHHc--CCCEEEEeecC
Q 030836 63 GFSLGVDLGLSRTGLALSK-G-FCVRPLTVL--KL----R-----GEKLELQLLEIAQRE--ETDEFIIGLPK 120 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD-~-~~a~Pl~~i--~~----~-----~~~~~~~L~~li~e~--~v~~IVVGlPl 120 (170)
..++|||+|+..+-+++.+ + .....+... +. + .......|++++.+. ++..+++++|-
T Consensus 13 ~~~vgiDiGt~~i~~~~~~~~~~~i~~~g~~~~ps~~~~~g~i~d~~~~~~~ik~~~~~~~~~~~~v~~~i~~ 85 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVSGNPPALKALASRPTPPGLLMEGMVAEPAALAQEIKELLLEARTRKRYVVTALSN 85 (377)
T ss_dssp CCCEEEEECSSEEEEEEEETTTTEEEEEEEEECCTTSEETTEESCHHHHHHHHHHHHHHHTCCCCEEEEEECG
T ss_pred CceEEEEeCCCeEEEEEEeCCceEEEEEEeEECCCCcccCCCcCCHHHHHHHHHHHHHHcCCCcceEEEEecC
Confidence 3589999999999998875 2 222222222 11 0 123456788888765 56789999874
No 58
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=66.74 E-value=25 Score=30.33 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=37.6
Q ss_pred eEEEEecCCCeEEEEEecC--Ce--e-EEeEEEEccchhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHH
Q 030836 64 FSLGVDLGLSRTGLALSKG--FC--V-RPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAG 138 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~--~~--a-~Pl~~i~~~~~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~ 138 (170)
+++|+|+|...+=+|..+. .. . .|...+. ....+.+.|+++..+ ++...|=+==.+-.-.....+-|...++
T Consensus 1 ~iiG~DIGGAn~K~a~~~~~g~~~~~~~~~PlW~-~~~~L~~~l~~~~~~--~~~~avtMTgELaD~f~~k~eGV~~I~~ 77 (334)
T 3cet_A 1 MILGIDIGGANTKITELHENGEFKVHHLYFPMWK-NNDKLAEVLKTYSND--VSHVALVTTAELADSYETKKEGVDNILN 77 (334)
T ss_dssp CEEEEEEC--CEEEEEECSTTCCEEEEC------------------------CCEEEEEECCC------CTTHHHHHHHH
T ss_pred CeeEEEecccceeeeeecCCCceEEEEEecCCcC-CchHHHHHHHHHHhh--hccEEEEechhhhhhhcCHHHHHHHHHH
Confidence 4899999999999997663 21 1 1222232 123444556665553 3555543321222223446677888888
Q ss_pred HHHHhhccCCccEEEEc
Q 030836 139 RLAVRAAERGWRVYLLD 155 (170)
Q Consensus 139 ~L~~~~~~~~lpV~lvD 155 (170)
.+++.| +.||+++.
T Consensus 78 ~v~~~~---~~~v~i~~ 91 (334)
T 3cet_A 78 AAESAF---GSNISVFD 91 (334)
T ss_dssp HHHHHH---TTCEEEEC
T ss_pred HHHHhc---CCceEEEe
Confidence 888877 45777765
No 59
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=66.60 E-value=7.5 Score=28.03 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
....+.|.++++++++|.||+|-.-. ..-.....-..++.+-... .+||..+-..
T Consensus 103 g~~~~~I~~~a~~~~~DlIV~G~~g~----~~~~~~~~Gsv~~~vl~~~---~~PVlvv~~~ 157 (170)
T 2dum_A 103 GIPWDEIVKVAEEENVSLIILPSRGK----LSLSHEFLGSTVMRVLRKT---KKPVLIIKEV 157 (170)
T ss_dssp ECHHHHHHHHHHHTTCSEEEEESCCC----CC--TTCCCHHHHHHHHHC---SSCEEEECCC
T ss_pred CChHHHHHHHHHHcCCCEEEECCCCC----CccccceechHHHHHHHhC---CCCEEEEccC
Confidence 35678899999999999999995421 1110011123455555553 6899988644
No 60
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=62.78 E-value=4.9 Score=36.51 Aligned_cols=19 Identities=32% Similarity=0.622 Sum_probs=17.2
Q ss_pred ceEEEEecCCCeEEEEEec
Q 030836 63 GFSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD 81 (170)
+.++|||+|+..++||+.+
T Consensus 2 ~~viGIDlGTT~S~Va~~~ 20 (605)
T 4b9q_A 2 GKIIGIDLGTTNSCVAIMD 20 (605)
T ss_dssp CCEEEEECCSSEEEEEEEE
T ss_pred CcEEEEEcCCCcEEEEEEE
Confidence 4699999999999999975
No 61
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=62.50 E-value=36 Score=28.22 Aligned_cols=83 Identities=14% Similarity=0.085 Sum_probs=53.6
Q ss_pred ceEEEEecCCCeEEEEEecC--CeeEEeEEEEc---------cc----h-------hHHHHHHHHHHHcCCCEEE-Eeec
Q 030836 63 GFSLGVDLGLSRTGLALSKG--FCVRPLTVLKL---------RG----E-------KLELQLLEIAQREETDEFI-IGLP 119 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~--~~a~Pl~~i~~---------~~----~-------~~~~~L~~li~e~~v~~IV-VGlP 119 (170)
.++-+||.|+-.|=+.|.+. ....++..... .+ . +.....++++++|+++.+. |+
T Consensus 4 ~~~A~IDiGSNsirL~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~~~~~~v~~v~~vA-- 81 (315)
T 3mdq_A 4 QRIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKGFITEEAMDRALDTLKKFRVILDEHAVVHVIATG-- 81 (315)
T ss_dssp CEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE--
T ss_pred ceEEEEEecCCcEEEEEEEEcCCceEEeeeceeeeeccccccccCCcCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEe--
Confidence 46889999999999999873 22233332211 00 0 1134677788899999664 55
Q ss_pred CCCCCCCC-hhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 120 KSWDGSET-PQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 120 l~~dGt~s-~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
|.. -.+.....|.+++++.+ +++|..++
T Consensus 82 -----TsA~R~A~N~~~fl~~i~~~t---G~~i~vIs 110 (315)
T 3mdq_A 82 -----TSAVRSGSNKQVLIDRIKKEV---NIDVEVID 110 (315)
T ss_dssp -----CHHHHHCTTHHHHHHHHHHHH---CCCEEECC
T ss_pred -----eHHHHcCcCHHHHHHHHHHHH---CCCeEEeC
Confidence 321 12334568999999886 88998876
No 62
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=61.48 E-value=27 Score=28.12 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=17.9
Q ss_pred ceEEEEecCCCeEEEEEecC
Q 030836 63 GFSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~ 82 (170)
..+||||.|..+|=+++.|.
T Consensus 11 ~~~lGiDiGgT~i~~~l~d~ 30 (305)
T 1zc6_A 11 RYLIGVDGGGTGTRIRLHAS 30 (305)
T ss_dssp CEEEEEEECSSCEEEEEEET
T ss_pred CEEEEEEcCccceEEEEEcC
Confidence 37999999999999999983
No 63
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=61.20 E-value=8.5 Score=26.78 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred hHHHHHHH-HHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 97 KLELQLLE-IAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 97 ~~~~~L~~-li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
...+.|.+ +++++++|.||+|-.-. ..-.....-..++.+-... ..||..+
T Consensus 94 ~~~~~I~~~~a~~~~~dliV~G~~~~----~~~~~~~~Gs~~~~vl~~~---~~pVlvV 145 (146)
T 3s3t_A 94 IPKHTIEDYAKQHPEIDLIVLGATGT----NSPHRVAVGSTTSYVVDHA---PCNVIVI 145 (146)
T ss_dssp CHHHHHHHHHHHSTTCCEEEEESCCS----SCTTTCSSCHHHHHHHHHC---SSEEEEE
T ss_pred ChHHHHHHHHHhhcCCCEEEECCCCC----CCcceEEEcchHHHHhccC---CCCEEEe
Confidence 46678888 99999999999995421 1100001123445555553 6788765
No 64
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=60.47 E-value=8.5 Score=26.67 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
....+.|.++++++++|.||+|-. . .|-.. ...-..++.+-... .+||..+
T Consensus 92 g~~~~~I~~~a~~~~~dliV~G~~-~-~~~~~---~~~Gs~~~~v~~~~---~~pVlvv 142 (143)
T 3fdx_A 92 GSPKDKILALAKSLPADLVIIASH-R-PDITT---YLLGSNAAAVVRHA---ECSVLVV 142 (143)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEESS-C-TTCCS---CSSCHHHHHHHHHC---SSEEEEE
T ss_pred cChHHHHHHHHHHhCCCEEEEeCC-C-CCCee---eeeccHHHHHHHhC---CCCEEEe
Confidence 356788999999999999999965 2 22111 01123445555543 6788764
No 65
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=60.38 E-value=22 Score=24.10 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
.+..+.+.+..++.||+.+ . .+. ....+++.|++..+ ++||+++-...+...+.+.
T Consensus 38 ~~a~~~l~~~~~dlvi~d~-~--~~~------~g~~~~~~l~~~~~--~~pii~ls~~~~~~~~~~~ 93 (142)
T 2qxy_A 38 QEAFTFLRREKIDLVFVDV-F--EGE------ESLNLIRRIREEFP--DTKVAVLSAYVDKDLIINS 93 (142)
T ss_dssp HHHHHHHTTSCCSEEEEEC-T--TTH------HHHHHHHHHHHHCT--TCEEEEEESCCCHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEeC-C--CCC------cHHHHHHHHHHHCC--CCCEEEEECCCCHHHHHHH
Confidence 3444566678999999997 3 221 12466777777653 7899888665555444443
No 66
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=60.31 E-value=6.5 Score=27.36 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeec
Q 030836 96 EKLELQLLEIAQREETDEFIIGLP 119 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlP 119 (170)
....+.|.+.++++++|.||+|-.
T Consensus 96 g~~~~~I~~~a~~~~~dliV~G~~ 119 (147)
T 3hgm_A 96 GRPSRTIVRFARKRECDLVVIGAQ 119 (147)
T ss_dssp SCHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCHHHHHHHHHHHhCCCEEEEeCC
Confidence 356788999999999999999964
No 67
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=60.18 E-value=5.7 Score=28.27 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=31.6
Q ss_pred hhHHHHHHHH-HHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 96 EKLELQLLEI-AQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 96 ~~~~~~L~~l-i~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
....+.|.+. ++++++|.||+|-.-. .+- ....-..++.+-... .+||..+
T Consensus 104 g~~~~~I~~~~a~~~~~DlIV~G~~g~----~~~-~~~~Gs~~~~vl~~a---~~PVlvV 155 (156)
T 3fg9_A 104 GDVDDVILEQVIPEFKPDLLVTGADTE----FPH-SKIAGAIGPRLARKA---PISVIVV 155 (156)
T ss_dssp SCHHHHHHHTHHHHHCCSEEEEETTCC----CTT-SSSCSCHHHHHHHHC---SSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCC----Ccc-ceeecchHHHHHHhC---CCCEEEe
Confidence 4567889998 8999999999995321 111 111223445555553 6788765
No 68
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=59.81 E-value=39 Score=23.21 Aligned_cols=58 Identities=9% Similarity=0.085 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+.+.+..++.||+.+-+ .+..+ ..+++.|++..+ ++||+++-...+...+.+.+
T Consensus 56 ~~al~~l~~~~~dlii~D~~l--~~~~g------~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~ 113 (150)
T 4e7p_A 56 QEAIQLLEKESVDIAILDVEM--PVKTG------LEVLEWIRSEKL--ETKVVVVTTFKRAGYFERAV 113 (150)
T ss_dssp HHHHHHHTTSCCSEEEECSSC--SSSCH------HHHHHHHHHTTC--SCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHhhccCCCEEEEeCCC--CCCcH------HHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHH
Confidence 455566677899999999643 23222 467777777653 78999887776666655544
No 69
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=58.83 E-value=50 Score=27.44 Aligned_cols=82 Identities=10% Similarity=0.103 Sum_probs=53.1
Q ss_pred eEEEEecCCCeEEEEEecC--CeeEEeEEEEc--c--c-------------h---hHHHHHHHHHHHcCCCEEE-EeecC
Q 030836 64 FSLGVDLGLSRTGLALSKG--FCVRPLTVLKL--R--G-------------E---KLELQLLEIAQREETDEFI-IGLPK 120 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~--~~a~Pl~~i~~--~--~-------------~---~~~~~L~~li~e~~v~~IV-VGlPl 120 (170)
++-+||.|+--|=+.|.+. ....++..... + . . +.....++++++|+++.+. |+
T Consensus 13 ~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~~~~~~v~~i~~vA--- 89 (315)
T 1t6c_A 13 RVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKAVA--- 89 (315)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE---
T ss_pred EEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeecCCCccccCCcCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEE---
Confidence 7899999999999999983 22233332211 0 0 0 1134567778899999655 65
Q ss_pred CCCCCC-ChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 121 SWDGSE-TPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 121 ~~dGt~-s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
|. -..+.....|.+++++.+ +++|..++
T Consensus 90 ----TsA~R~A~N~~~fl~~v~~~~---G~~i~vIs 118 (315)
T 1t6c_A 90 ----TEAIRRAKNAEEFLERVKREV---GLVVEVIT 118 (315)
T ss_dssp ----CHHHHTSTTHHHHHHHHHHHT---CCCEEECC
T ss_pred ----cHHHHcCcCHHHHHHHHHHHH---CCCEEEcC
Confidence 21 112334568999999875 88888876
No 70
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=58.70 E-value=42 Score=23.16 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+.+.+..++.||+.+-+. +..+ -.+++.|++..+ .+||+++-...+...+.+.+
T Consensus 48 ~~a~~~l~~~~~dlvi~D~~l~--~~~g------~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~ 105 (153)
T 3hv2_A 48 TQALQLLASREVDLVISAAHLP--QMDG------PTLLARIHQQYP--STTRILLTGDPDLKLIAKAI 105 (153)
T ss_dssp HHHHHHHHHSCCSEEEEESCCS--SSCH------HHHHHHHHHHCT--TSEEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeCCCC--cCcH------HHHHHHHHhHCC--CCeEEEEECCCCHHHHHHHH
Confidence 3444566778999999996432 3222 466777777654 78999988777766665554
No 71
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=57.73 E-value=24 Score=27.84 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=17.5
Q ss_pred ceEEEEecCCCeEEEEEecC
Q 030836 63 GFSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~ 82 (170)
+.+||||.|+..|=+|+.|.
T Consensus 1 M~~lGID~GsT~tk~av~d~ 20 (276)
T 4ehu_A 1 MYTMGLDIGSTASKGVILKN 20 (276)
T ss_dssp CEEEEEEECSSCEEEEEEET
T ss_pred CeEEEEEcCccEEEEEEEEC
Confidence 36899999999999999884
No 72
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=55.61 E-value=31 Score=28.80 Aligned_cols=96 Identities=20% Similarity=0.153 Sum_probs=42.0
Q ss_pred EEEecCCCeEEEEEec-CCeeEEeEEEEccc---hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChh----HHHHHHHH
Q 030836 66 LGVDLGLSRTGLALSK-GFCVRPLTVLKLRG---EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQ----SNKVRSVA 137 (170)
Q Consensus 66 LgID~G~kRiGVAvsD-~~~a~Pl~~i~~~~---~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~----~~~vr~F~ 137 (170)
-|+|.|+-..+...-= +..+-.++.+..+. .+..+++.+++.+.++++|++. |+.++. .++-++++
T Consensus 9 ~~~~~~~~~~~~~~~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~------GtTGE~~~Ls~~Er~~v~ 82 (314)
T 3qze_A 9 SGVDLGTENLYFQSMIAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAV------GTTGESATLDVEEHIQVI 82 (314)
T ss_dssp --------------CCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEES------SGGGTGGGCCHHHHHHHH
T ss_pred cccccccccccccccCCeeEEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEC------ccccChhhCCHHHHHHHH
Confidence 4788888777666321 22222222332111 1234566666667899999997 555541 11222333
Q ss_pred HHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 138 GRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 138 ~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
+...+... -.+||+.-==..||.+|-+..+
T Consensus 83 ~~~v~~~~-grvpViaGvg~~st~eai~la~ 112 (314)
T 3qze_A 83 RRVVDQVK-GRIPVIAGTGANSTREAVALTE 112 (314)
T ss_dssp HHHHHHHT-TSSCEEEECCCSSHHHHHHHHH
T ss_pred HHHHHHhC-CCCcEEEeCCCcCHHHHHHHHH
Confidence 33333332 1478887666678888876543
No 73
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=55.22 E-value=6 Score=35.92 Aligned_cols=19 Identities=32% Similarity=0.622 Sum_probs=16.1
Q ss_pred ceEEEEecCCCeEEEEEec
Q 030836 63 GFSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD 81 (170)
+.++|||+|+..++||+.+
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (605)
T 2kho_A 2 GKIIGIDLGTTNSCVAIMD 20 (605)
T ss_dssp --CEEEECCSSEEEEEEEE
T ss_pred CCEEEEEcCCcCEEEEEEE
Confidence 3589999999999999986
No 74
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=55.13 E-value=7.8 Score=34.16 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=16.7
Q ss_pred eEEEEecCCCeEEEEEec
Q 030836 64 FSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD 81 (170)
.++|||+|+..+++|+.+
T Consensus 3 ~~iGIDlGTt~s~va~~~ 20 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLE 20 (509)
T ss_dssp CEEEEEECSSEEEEEEEE
T ss_pred CEEEEEcCCceEEEEEEE
Confidence 589999999999999886
No 75
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=54.98 E-value=7.8 Score=28.09 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeec
Q 030836 96 EKLELQLLEIAQREETDEFIIGLP 119 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlP 119 (170)
....+.|.++++++++|.||+|-.
T Consensus 103 G~~~~~I~~~a~~~~~DLIV~G~~ 126 (155)
T 3dlo_A 103 KEPPDDIVDFADEVDAIAIVIGIR 126 (155)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCHHHHHHHHHHHcCCCEEEECCC
Confidence 456789999999999999999954
No 76
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=54.84 E-value=65 Score=28.26 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=17.9
Q ss_pred ceEEEEecCCCeEEEEEecC
Q 030836 63 GFSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~ 82 (170)
..+||||+|+..+=+++.|.
T Consensus 7 ~~~lgIDiGtts~k~~l~d~ 26 (508)
T 3ifr_A 7 RQVIGLDIGTTSTIAILVRL 26 (508)
T ss_dssp CEEEEEEECSSEEEEEEEET
T ss_pred CEEEEEEecCcceEEEEECC
Confidence 47999999999999999984
No 77
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=54.03 E-value=46 Score=22.23 Aligned_cols=58 Identities=9% Similarity=-0.004 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+.+++..++.||+.+-+. +..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~--~~~g------~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~ 98 (137)
T 3hdg_A 41 EEGERLFGLHAPDVIITDIRMP--KLGG------LEMLDRIKAGGA--KPYVIVISAFSEMKYFIKAI 98 (137)
T ss_dssp HHHHHHHHHHCCSEEEECSSCS--SSCH------HHHHHHHHHTTC--CCEEEECCCCCCHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEeCCCC--CCCH------HHHHHHHHhcCC--CCcEEEEecCcChHHHHHHH
Confidence 3445556677999999996432 3222 467777877653 78999887666655554443
No 78
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=54.00 E-value=50 Score=22.63 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+.+.+..++.||+.+-+ .+..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 51 ~~a~~~l~~~~~dlii~d~~l--~~~~g------~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~ 108 (152)
T 3eul_A 51 AAALELIKAHLPDVALLDYRM--PGMDG------AQVAAAVRSYEL--PTRVLLISAHDEPAIVYQAL 108 (152)
T ss_dssp HHHHHHHHHHCCSEEEEETTC--SSSCH------HHHHHHHHHTTC--SCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCC--CCCCH------HHHHHHHHhcCC--CCeEEEEEccCCHHHHHHHH
Confidence 345556667799999999643 23222 467777777653 78999887666665555444
No 79
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=52.61 E-value=42 Score=27.51 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
..+.|.+.++..++..|++-.|-+..|..-+.. .++++++..++. ++ .+.+||-++
T Consensus 170 d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~-~l~~i~~~a~~~----~~-~li~De~~~ 225 (437)
T 3g0t_A 170 LREKLESYLQTGQFCSIIYSNPNNPTWQCMTDE-ELRIIGELATKH----DV-IVIEDLAYF 225 (437)
T ss_dssp HHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHH-HHHHHHHHHHHT----TC-EEEEECTTT
T ss_pred CHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHH-HHHHHHHHHHHC----Cc-EEEEEcchh
Confidence 356788888667899999999988888765433 356666555443 54 566888775
No 80
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=52.22 E-value=50 Score=22.12 Aligned_cols=57 Identities=7% Similarity=0.158 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+.+.+..++.|++.+- +.|..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 40 ~al~~~~~~~~dlvilD~~--lp~~~g------~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~ 96 (133)
T 3b2n_A 40 DAMKLIEEYNPNVVILDIE--MPGMTG------LEVLAEIRKKHL--NIKVIIVTTFKRPGYFEKAV 96 (133)
T ss_dssp HHHHHHHHHCCSEEEECSS--CSSSCH------HHHHHHHHHTTC--SCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEecC--CCCCCH------HHHHHHHHHHCC--CCcEEEEecCCCHHHHHHHH
Confidence 3445556678999999863 333322 356677776543 78999886655555554443
No 81
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=52.19 E-value=35 Score=27.93 Aligned_cols=38 Identities=5% Similarity=0.123 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 126 ~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
..+..+.+.++.+.+++. +++++|+++.+++..|+.+-
T Consensus 210 ~eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~la 247 (286)
T 3gi1_A 210 QEPSPRQLKEIQDFVKEY----NVKTIFAEDNVNPKIAHAIA 247 (286)
T ss_dssp --CCHHHHHHHHHHHHHT----TCCEEEECTTSCTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHH
Confidence 345677788888888775 78888888888888877543
No 82
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=51.61 E-value=27 Score=28.43 Aligned_cols=38 Identities=8% Similarity=0.084 Sum_probs=31.6
Q ss_pred CChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 126 ~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
..+..+.+.++.+.+++. +++++|++..+++..|+.+-
T Consensus 205 ~eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~ia 242 (284)
T 2prs_A 205 IQPGAQRLHEIRTQLVEQ----KATCVFAEPQFRPAVVESVA 242 (284)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCCEEEECTTSCSHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHH
Confidence 456778889999999876 89999999999998887653
No 83
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=51.16 E-value=36 Score=22.76 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCC---CCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWD---GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~d---Gt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
.+..+.+.+..++.||+.+-...+ +..+ ..+++.|++..+ .+||+++-...+...+.+.
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g------~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~ 98 (140)
T 2qr3_A 37 VSLSTVLREENPEVVLLDMNFTSGINNGNEG------LFWLHEIKRQYR--DLPVVLFTAYADIDLAVRG 98 (140)
T ss_dssp HHHHHHHHHSCEEEEEEETTTTC-----CCH------HHHHHHHHHHCT--TCCEEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeCCcCCCCCCCccH------HHHHHHHHhhCc--CCCEEEEECCCCHHHHHHH
Confidence 344556667889999999644200 2211 356677776653 7898887655454444433
No 84
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=50.37 E-value=14 Score=25.52 Aligned_cols=43 Identities=5% Similarity=-0.007 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
....+.|.+.++++++|.||+|-. |. ..++.+-... ..||..+
T Consensus 95 g~~~~~I~~~a~~~~~dliV~G~~----g~---------sv~~~vl~~a---~~PVlvv 137 (138)
T 1q77_A 95 GPLSEEVKKFVEGKGYELVVWACY----PS---------AYLCKVIDGL---NLASLIV 137 (138)
T ss_dssp SCHHHHHHHHHTTSCCSEEEECSC----CG---------GGTHHHHHHS---SSEEEEC
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCC----CC---------chHHHHHHhC---CCceEee
Confidence 356778999999999999999942 32 3344554443 5788754
No 85
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=49.79 E-value=42 Score=22.27 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=31.3
Q ss_pred HHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHH
Q 030836 104 EIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAV 164 (170)
Q Consensus 104 ~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~ 164 (170)
+.+.+..++.|++.+-.. +..+ ..+++.|++..+ ++||+++-...+...+.
T Consensus 40 ~~~~~~~~dlii~d~~l~--~~~g------~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~ 90 (134)
T 3f6c_A 40 QRVETLKPDIVIIDVDIP--GVNG------IQVLETLRKRQY--SGIIIIVSAKNDHFYGK 90 (134)
T ss_dssp HHHHHHCCSEEEEETTCS--SSCH------HHHHHHHHHTTC--CSEEEEEECC---CTHH
T ss_pred HHHHhcCCCEEEEecCCC--CCCh------HHHHHHHHhcCC--CCeEEEEeCCCChHHHH
Confidence 445567899999996442 3222 467778877654 78988876554443333
No 86
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=49.60 E-value=1.1e+02 Score=26.91 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=33.6
Q ss_pred ceEEEEecCCCeEEEEEec-CC---eeE---EeEE-EEccchhHHHHHHHHHHHc----CCCEEEEee
Q 030836 63 GFSLGVDLGLSRTGLALSK-GF---CVR---PLTV-LKLRGEKLELQLLEIAQRE----ETDEFIIGL 118 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD-~~---~a~---Pl~~-i~~~~~~~~~~L~~li~e~----~v~~IVVGl 118 (170)
..+||||+|+..+=+++.| .. .+. |..- ........++.+.+.+++- +|..|-|+-
T Consensus 5 ~~~lgIDiGtts~ka~l~d~~~G~i~~~~~~~~~g~~e~d~~~~~~~i~~~l~~~~~~~~I~~Igis~ 72 (515)
T 3i8b_A 5 TLVAGVDTSTQSCKVRVTDAETGELVRFGQAKHPNGTSVDPSYWWSAFQEAAEQAGGLDDVSALAVGG 72 (515)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCSSSEECTHHHHHHHHHHHHHTTCSTTEEEEEEEE
T ss_pred cEEEEEEeccccEEEEEEECCCCeEEEEEEEeCCCCceECHHHHHHHHHHHHHhcCCccCceEEEEeC
Confidence 4799999999999999888 42 222 2210 1112233456777777653 345555553
No 87
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=49.28 E-value=63 Score=22.42 Aligned_cols=57 Identities=7% Similarity=0.029 Sum_probs=36.5
Q ss_pred HHHHHHHHc--CCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQRE--ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~--~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+.+.+. .++.||+.+-+ .+..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 72 ~al~~l~~~~~~~dliilD~~l--~~~~g------~~~~~~lr~~~~--~~~ii~ls~~~~~~~~~~~~ 130 (157)
T 3hzh_A 72 EAVIKYKNHYPNIDIVTLXITM--PKMDG------ITCLSNIMEFDK--NARVIMISALGKEQLVKDCL 130 (157)
T ss_dssp HHHHHHHHHGGGCCEEEECSSC--SSSCH------HHHHHHHHHHCT--TCCEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEeccC--CCccH------HHHHHHHHhhCC--CCcEEEEeccCcHHHHHHHH
Confidence 344455556 78999998643 23222 467777777653 78999887766666555444
No 88
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=49.19 E-value=36 Score=27.76 Aligned_cols=37 Identities=0% Similarity=-0.008 Sum_probs=30.2
Q ss_pred CChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 126 ~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
..+..+.+.++.+.+++. +++++|+++.+++..|+.+
T Consensus 194 ~eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~l 230 (282)
T 3mfq_A 194 SEVANSDMIETVNLIIDH----NIKAIFTESTTNPERMKKL 230 (282)
T ss_dssp SCCCHHHHHHHHHHHHHH----TCCEEECBTTSCTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHH
Confidence 346788889999999886 8999999988888877754
No 89
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=49.18 E-value=61 Score=22.20 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+++.+..++.||+.+-.. +..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~--~~~g------~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~ 98 (153)
T 3cz5_A 41 GEAYRLYRETTPDIVVMDLTLP--GPGG------IEATRHIRQWDG--AARILIFTMHQGSAFALKAF 98 (153)
T ss_dssp HHHHHHHHTTCCSEEEECSCCS--SSCH------HHHHHHHHHHCT--TCCEEEEESCCSHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCC--CCCH------HHHHHHHHHhCC--CCeEEEEECCCCHHHHHHHH
Confidence 3445566777899999986432 2222 366777777653 78988886665555554443
No 90
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=49.16 E-value=34 Score=27.81 Aligned_cols=38 Identities=8% Similarity=0.140 Sum_probs=31.4
Q ss_pred CChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 126 ~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
..+..+.+.++++.+++. +++++|+++.+++..|+.+-
T Consensus 208 ~eps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~~ia 245 (284)
T 3cx3_A 208 QEPSPRQLTEIQEFVKTY----KVKTIFTESNASSKVAETLV 245 (284)
T ss_dssp CCCCSHHHHHHHHHHHHT----TCCCEEECSSSCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHH
Confidence 456778889999999875 89999999999988887653
No 91
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=48.93 E-value=30 Score=30.88 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=51.5
Q ss_pred CceEEEEecCCCeEEEEEecC--CeeEEeEEEEcc---------ch-----------hHHHHHHHHHHHcCCC-EEEEee
Q 030836 62 GGFSLGVDLGLSRTGLALSKG--FCVRPLTVLKLR---------GE-----------KLELQLLEIAQREETD-EFIIGL 118 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD~--~~a~Pl~~i~~~---------~~-----------~~~~~L~~li~e~~v~-~IVVGl 118 (170)
..++-+||.|+-.|=+.|.+. ....++...... +. +......+++++|+++ ..+|+
T Consensus 10 ~~~~AaIDiGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~eai~r~~~~L~~f~~~~~~~~v~~v~~vA- 88 (513)
T 1u6z_A 10 PQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVG- 88 (513)
T ss_dssp --CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHHTTTCCGGGEEEEE-
T ss_pred CCeEEEEEeccccEEEEEEEEcCCeeEEEEeeEEEEeccCcccccCCcCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEe-
Confidence 347999999999999999883 222333322210 00 1124566677788987 45565
Q ss_pred cCCCCCCCC-hhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 119 PKSWDGSET-PQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 119 Pl~~dGt~s-~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
|.. -.+..-..|.+++++.+ |++|..++
T Consensus 89 ------TsA~R~A~N~~~fl~~i~~~t---G~~i~vIs 117 (513)
T 1u6z_A 89 ------THTLRQALNATDFLKRAEKVI---PYPIEIIS 117 (513)
T ss_dssp ------CHHHHHCTTHHHHHHHHTTTC---SSCEEECC
T ss_pred ------cHHHHcCcCHHHHHHHHHHHH---CCCEEEeC
Confidence 211 12334468999988874 89998886
No 92
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=48.92 E-value=49 Score=22.39 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHH--hhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAV--RAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~--~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+.+.+..++.||+.+-. .+..+ ..+++.|++ .. .++||+++-...+...+.+.+
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l--~~~~g------~~~~~~lr~~~~~--~~~pii~~s~~~~~~~~~~~~ 100 (144)
T 3kht_A 41 AKALYQVQQAKYDLIILDIGL--PIANG------FEVMSAVRKPGAN--QHTPIVILTDNVSDDRAKQCM 100 (144)
T ss_dssp HHHHHHHTTCCCSEEEECTTC--GGGCH------HHHHHHHHSSSTT--TTCCEEEEETTCCHHHHHHHH
T ss_pred HHHHHHhhcCCCCEEEEeCCC--CCCCH------HHHHHHHHhcccc--cCCCEEEEeCCCCHHHHHHHH
Confidence 344556677899999998632 22222 467777776 33 378999887776666665554
No 93
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=48.50 E-value=63 Score=22.16 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+.+.+..++.||+.+-+. +..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~--~~~g------~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~ 98 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDMRMP--EMGG------EVFLEQVAKSYP--DIERVVISGYADAQATIDAV 98 (154)
T ss_dssp HHHHHHHTTSCCSEEEEESSCS--SSCH------HHHHHHHHHHCT--TSEEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCC--CCCH------HHHHHHHHHhCC--CCcEEEEecCCCHHHHHHHH
Confidence 3455566677899999997442 2222 366777776653 78998886665555554444
No 94
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=48.47 E-value=72 Score=28.33 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=54.1
Q ss_pred ceEEEEecCCCeEEEEEecCC--eeEEeEEEE---c--cc--------h-------hHHHHHHHHHHHcCCCEEE-Eeec
Q 030836 63 GFSLGVDLGLSRTGLALSKGF--CVRPLTVLK---L--RG--------E-------KLELQLLEIAQREETDEFI-IGLP 119 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~--~a~Pl~~i~---~--~~--------~-------~~~~~L~~li~e~~v~~IV-VGlP 119 (170)
.++-+||.|+-.+=+.|.+.. ...++.... + .. . +......++++.|+++.+. |+
T Consensus 15 ~~~AaIDiGSNS~rL~I~~~~~~~~~~~~~~k~~vrLg~gl~~~g~Ls~eai~r~~~~L~~F~~~~~~~~v~~v~~vA-- 92 (508)
T 3hi0_A 15 APVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVLSEQAQAQKLYVLA-- 92 (508)
T ss_dssp CCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE--
T ss_pred CeEEEEEECCccEEEEEEEEcCCCceEEEEEeEEeecccCccccCCcCHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe--
Confidence 578999999999999999842 122222211 1 00 0 1134566788899998765 55
Q ss_pred CCCCCCCC-hhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 120 KSWDGSET-PQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 120 l~~dGt~s-~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
|.. -.+.....|.+++++.+ |++|..++
T Consensus 93 -----TsA~R~A~N~~~fl~~i~~~t---G~~ievIs 121 (508)
T 3hi0_A 93 -----TAAAREAENGPDFIREAEAIL---GCEIEVLS 121 (508)
T ss_dssp -----CTHHHHSTTHHHHHHHHHHHH---TSCEEECC
T ss_pred -----eHHHHcCcCHHHHHHHHHHHH---CCCeEEec
Confidence 322 13344578999999886 89998886
No 95
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=48.35 E-value=29 Score=27.75 Aligned_cols=55 Identities=16% Similarity=0.081 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++.++..|++-.|-+..|..-+. ..+++.++..++. ++ .+.+||-++
T Consensus 149 ~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~-~~l~~i~~~~~~~----~~-~li~De~~~ 203 (391)
T 3dzz_A 149 WADLEEKLATPSVRMMVFCNPHNPIGYAWSE-EEVKRIAELCAKH----QV-LLISDEIHG 203 (391)
T ss_dssp HHHHHHHHTSTTEEEEEEESSBTTTTBCCCH-HHHHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHHHhccCceEEEEECCCCCCCcccCH-HHHHHHHHHHHHC----CC-EEEEecccc
Confidence 5778888876788899999898887865332 2355666554442 54 556898875
No 96
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=47.62 E-value=46 Score=28.07 Aligned_cols=84 Identities=8% Similarity=0.063 Sum_probs=52.5
Q ss_pred ceEEEEecCCCeEEEEEecCC---eeEEeEEEEcc---------c----h-------hHHHHHHHHHHHcCCCEEEEeec
Q 030836 63 GFSLGVDLGLSRTGLALSKGF---CVRPLTVLKLR---------G----E-------KLELQLLEIAQREETDEFIIGLP 119 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~---~a~Pl~~i~~~---------~----~-------~~~~~L~~li~e~~v~~IVVGlP 119 (170)
.++-+||.|+-.|=+.|.+.. ...++...... + . +.....++++++|+++.+.+-
T Consensus 16 ~~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~aL~~f~~~~~~~~v~~v~~v-- 93 (343)
T 3cer_A 16 VTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREFAGVIAEHPIDGLRFV-- 93 (343)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHTTSCCSEEEEE--
T ss_pred CeEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEEeeCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHCCCCeEEEE--
Confidence 468999999999999998832 22333222110 0 0 113456777789999855443
Q ss_pred CCCCCCCC-hhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 120 KSWDGSET-PQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 120 l~~dGt~s-~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
+|.. -.+..-..|.+++++++ +++|..++
T Consensus 94 ----ATsA~R~A~N~~~fl~~v~~~t---Gi~ieVIs 123 (343)
T 3cer_A 94 ----ATSATRDAENREEFEDEIERIL---GVRPEVIP 123 (343)
T ss_dssp ----ECHHHHHCTTHHHHHHHHHHHH---SSCCEECC
T ss_pred ----ecHHHHcCcCHHHHHHHHHHHH---CCCEEEeC
Confidence 2211 12333468999999886 78888776
No 97
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=47.58 E-value=58 Score=21.49 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+.+.+..++.||+.+-+. +..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~--~~~g------~~~~~~l~~~~~--~~~ii~~t~~~~~~~~~~~~ 98 (130)
T 3eod_A 41 VDALELLGGFTPDLMICDIAMP--RMNG------LKLLEHIRNRGD--QTPVLVISATENMADIAKAL 98 (130)
T ss_dssp HHHHHHHTTCCCSEEEECCC-------C------HHHHHHHHHTTC--CCCEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCC--CCCH------HHHHHHHHhcCC--CCCEEEEEcCCCHHHHHHHH
Confidence 3445566778899999996432 3222 466777777653 78998886666655544443
No 98
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=47.46 E-value=42 Score=27.92 Aligned_cols=38 Identities=8% Similarity=0.114 Sum_probs=31.1
Q ss_pred CChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 126 ~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
..+..+.+.++.+.+++. +++++|+++..++..|+.+-
T Consensus 228 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~la 265 (313)
T 1toa_A 228 SEASAHDMQELAAFIAQR----KLPAIFIESSIPHKNVEALR 265 (313)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCSEEEEETTSCTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHH
Confidence 456778888999888875 89999999999988887654
No 99
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=46.59 E-value=58 Score=25.89 Aligned_cols=54 Identities=9% Similarity=0.039 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+ ..++..|++-.|-+..|..-+.. .+++.++..++. ++ .+.+||-++
T Consensus 146 ~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~-~l~~l~~~~~~~----~~-~li~De~~~ 199 (383)
T 3kax_A 146 FEHLEKQF-QQGVKLMLLCSPHNPIGRVWKKE-ELTKLGSLCTKY----NV-IVVADEIHS 199 (383)
T ss_dssp HHHHHHHH-TTTCCEEEEESSBTTTTBCCCHH-HHHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHh-CcCCeEEEEeCCCCCCCcCcCHH-HHHHHHHHHHHC----CC-EEEEEcccc
Confidence 56777777 56899999999988888765433 355665555443 44 456788765
No 100
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=46.21 E-value=69 Score=25.76 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+.+ ++..||+-.|-++.|..-+.. .++++++..++. ++ .+.+||-++
T Consensus 169 ~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~-~l~~i~~~~~~~----~~-~li~Dea~~ 222 (407)
T 3nra_A 169 LTGLEEAFKA-GARVFLFSNPNNPAGVVYSAE-EIGQIAALAARY----GA-TVIADQLYS 222 (407)
T ss_dssp HHHHHHHHHT-TCCEEEEESSCTTTCCCCCHH-HHHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHHhh-CCcEEEEcCCCCCCCcccCHH-HHHHHHHHHHHc----CC-EEEEEcccc
Confidence 5677777765 888999999988888765432 356666555443 54 456898775
No 101
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=46.12 E-value=62 Score=25.30 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
.+..+.|.+++++.++|.||+|- .|...-........++.+-... .+||..+-.
T Consensus 237 g~~~~~I~~~a~~~~~dLlV~G~----~~~~~~~~~~~Gs~~~~vl~~~---~~pvLvv~~ 290 (294)
T 3loq_A 237 GTPHKAILAKREEINATTIFMGS----RGAGSVMTMILGSTSESVIRRS---PVPVFVCKR 290 (294)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEEC----CCCSCHHHHHHHCHHHHHHHHC---SSCEEEECS
T ss_pred CCHHHHHHHHHHhcCcCEEEEeC----CCCCCccceeeCcHHHHHHhcC---CCCEEEECC
Confidence 35678899999999999999994 2332222222344556666653 689888753
No 102
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=46.09 E-value=97 Score=24.82 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhH--------------HHHHHHHHHHHHhhccCCccEEEE
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQS--------------NKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~--------------~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
..++.+.+.+.++|.|-||.|...---.++.. +.+-+.++.+++.+| ++|+.+.
T Consensus 33 ~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~--~~Pi~~m 100 (262)
T 2ekc_A 33 SLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFP--DIPFLLM 100 (262)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC--CCCEEEE
Confidence 34666677788999999999996311223322 234466777777643 6898875
No 103
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=46.04 E-value=83 Score=27.44 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=18.0
Q ss_pred ceEEEEecCCCeEEEEEecC
Q 030836 63 GFSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~ 82 (170)
..+||||+|+..+=+++.|.
T Consensus 6 ~~~lgIDiGtts~k~~l~d~ 25 (501)
T 3g25_A 6 KYILSIDQGTTSSRAILFNQ 25 (501)
T ss_dssp CEEEEEEECSSEEEEEEECT
T ss_pred cEEEEEEeCccceEEEEEcC
Confidence 47999999999999999984
No 104
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=45.30 E-value=92 Score=26.76 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=37.6
Q ss_pred ceEEEEecCCCeEEEEEecC----CeeEEeEEEEcc--------c-hhHHHHHHHHHHH------cCCCE-EEEeecCC
Q 030836 63 GFSLGVDLGLSRTGLALSKG----FCVRPLTVLKLR--------G-EKLELQLLEIAQR------EETDE-FIIGLPKS 121 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~----~~a~Pl~~i~~~--------~-~~~~~~L~~li~e------~~v~~-IVVGlPl~ 121 (170)
..++|||+|+.+|=+.+.+. .....+...+.+ + ......|++.+++ .++.. ++||.|=+
T Consensus 8 ~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~gv~~G~I~di~~~~~~I~~av~~ae~~~g~~i~~~v~v~i~g~ 86 (419)
T 4a2a_A 8 VFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSV 86 (419)
T ss_dssp CEEEEEEECSSEEEEEEEEC----CEEEEEEEEECCSEETTEESBHHHHHHHHHHHHHHHHHHHTSCCCSEEEEEECCT
T ss_pred CEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccCCeeCCEEEcHHHHHHHHHHHHHHHHHHcCCCcCceEEEEEcCC
Confidence 47899999999998887762 122222222211 1 2334567777664 47888 99999866
No 105
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=45.05 E-value=56 Score=28.64 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.2
Q ss_pred CceEEEEecCCCeEEEEEecC
Q 030836 62 GGFSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD~ 82 (170)
...+||||+|+..+=+++.|.
T Consensus 3 m~~~lgIDiGtts~K~~l~d~ 23 (504)
T 3ll3_A 3 LKYIIGMDVGTTATKGVLYDI 23 (504)
T ss_dssp CEEEEEEEECSSEEEEEEEET
T ss_pred CCEEEEEEecCCceEEEEEcC
Confidence 357999999999999998884
No 106
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=45.03 E-value=48 Score=27.33 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
..+.|.+.+.+.++..|++-.|-+..|..-+. ..+++.++..++. ++ ++.+||-++
T Consensus 182 d~~~le~~i~~~~~~~vil~~p~nptG~~~~~-~~l~~l~~l~~~~----~~-~li~De~~~ 237 (421)
T 3l8a_A 182 DFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDN-DDLIKIAELCKKH----GV-ILVSDEIHQ 237 (421)
T ss_dssp CHHHHHHHHHHTTEEEEEEESSBTTTTBCCCH-HHHHHHHHHHHHH----TC-EEEEECTTT
T ss_pred CHHHHHHHhhccCCeEEEECCCCCCCCCcCCH-HHHHHHHHHHHHc----CC-EEEEEcccc
Confidence 35778888877789999998888877754322 2355666555443 54 455899865
No 107
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=45.02 E-value=62 Score=22.21 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+.+.+..++.||+.+-. .+..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 38 ~a~~~l~~~~~dliild~~l--~~~~g------~~~~~~l~~~~~--~~pii~ls~~~~~~~~~~~~ 94 (155)
T 1qkk_A 38 EALAGLSADFAGIVISDIRM--PGMDG------LALFRKILALDP--DLPMILVTGHGDIPMAVQAI 94 (155)
T ss_dssp HHHHTCCTTCCSEEEEESCC--SSSCH------HHHHHHHHHHCT--TSCEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCC--CCCCH------HHHHHHHHhhCC--CCCEEEEECCCChHHHHHHH
Confidence 34445556789999999643 23222 356677776653 78999886665555554443
No 108
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=44.66 E-value=65 Score=26.25 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+.+.+...|++-.|-++.|..-+ -+++.++++ +. ++ ++.+||-++
T Consensus 175 ~~~le~~l~~~~~~~vi~~~~~nptG~~~~-l~~l~~la~---~~----~~-~li~De~~~ 226 (409)
T 3kki_A 175 CDHLRMLIQRHGPGIIVVDSIYSTLGTIAP-LAELVNISK---EF----GC-ALLVDESHS 226 (409)
T ss_dssp HHHHHHHHHHHCSCEEEEESBCTTTCCBCC-HHHHHHHHH---HH----TC-EEEEECTTT
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCCCCcCC-HHHHHHHHH---Hc----CC-EEEEECCcc
Confidence 567888888777899999999888898776 333444443 32 43 667899875
No 109
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=44.47 E-value=33 Score=28.48 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=31.1
Q ss_pred CChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 126 ~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
..+..+.+.++++.+++. +++++|+++.+++..|+.+-.
T Consensus 221 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~ia~ 259 (312)
T 2o1e_A 221 QEPSAASLAKLKTYAKEH----NVKVIYFEEIASSKVADTLAS 259 (312)
T ss_dssp SCCCHHHHHHHHHHTTSS----CCCEEECSSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHHHH
Confidence 456778888888888764 899999999999988876543
No 110
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=44.46 E-value=14 Score=30.54 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=37.7
Q ss_pred eEEEEecCCCeEEEEEecCC-eeEE----eEEEEcc-----------ch--h----HH-HHHHHHHHHcCCCEEEEeecC
Q 030836 64 FSLGVDLGLSRTGLALSKGF-CVRP----LTVLKLR-----------GE--K----LE-LQLLEIAQREETDEFIIGLPK 120 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~~-~a~P----l~~i~~~-----------~~--~----~~-~~L~~li~e~~v~~IVVGlPl 120 (170)
+||+||+|.+....|..++. ...| ...+... +. . .. .-+..++..+.+|.|+|=--.
T Consensus 41 sIlSID~GikNlAyc~l~~~~~~~p~l~~W~kl~l~~~~~~~~~~k~~~~p~~~~~~a~~Li~~ll~~~~pd~vlIErQr 120 (258)
T 1kcf_A 41 RVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMERQR 120 (258)
T ss_dssp SEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCCTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEEEECC
T ss_pred cEEEEecCCCceEEEEEccCCCCCCeeecceeeccccccccccccccCcChHHHHHHHHHHHHHhhccCCCCEEEEeecC
Confidence 89999999999999998831 1112 1111110 00 0 11 123334556899999999877
Q ss_pred CCCC
Q 030836 121 SWDG 124 (170)
Q Consensus 121 ~~dG 124 (170)
...|
T Consensus 121 ~Rs~ 124 (258)
T 1kcf_A 121 YRSG 124 (258)
T ss_dssp CCTT
T ss_pred cccC
Confidence 6666
No 111
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=44.35 E-value=85 Score=24.75 Aligned_cols=52 Identities=10% Similarity=-0.041 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.++++++..|++=.|-+..|...+ +++.++..++. ++ ++.+||.++
T Consensus 160 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~----~~-~li~Dea~~ 211 (397)
T 3f9t_A 160 EKFVKDAVEDYDVDGIIGIAGTTELGTIDN----IEELSKIAKEN----NI-YIHVDAAFG 211 (397)
T ss_dssp HHHHHHHHHHSCCCEEEEEBSCTTTCCBCC----HHHHHHHHHHH----TC-EEEEECTTG
T ss_pred HHHHHHHHhhcCCeEEEEECCCCCCCCCCC----HHHHHHHHHHh----CC-eEEEEcccc
Confidence 577888888778899999999998898765 23333333332 44 667899876
No 112
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=44.33 E-value=29 Score=28.18 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=31.3
Q ss_pred HHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 106 AQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 106 i~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
+.+.+.|.|.|| |+.+-..+.+.+..+++++ . ++|+++.
T Consensus 27 ~~~~GtD~i~vG------Gs~gvt~~~~~~~v~~ik~-~---~~Pvvlf 65 (228)
T 3vzx_A 27 LCESGTDAVIIG------GSDGVTEDNVLRMMSKVRR-F---LVPCVLE 65 (228)
T ss_dssp HHTSSCSEEEEC------CCSCCCHHHHHHHHHHHTT-S---SSCEEEE
T ss_pred HHHcCCCEEEEC------CcCCCCHHHHHHHHHHhhc-c---CCCEEEe
Confidence 357799999999 7766667888888988876 3 7999884
No 113
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=44.31 E-value=12 Score=34.63 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=16.3
Q ss_pred eEEEEecCCCeEEEEEec
Q 030836 64 FSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD 81 (170)
.++|||+|+..+.||+.+
T Consensus 3 ~~iGIDlGTtns~va~~~ 20 (675)
T 3d2f_A 3 TPFGLDLGNNNSVLAVAR 20 (675)
T ss_dssp CCEEEECCSSEEEEEEEE
T ss_pred cEEEEEcCCCcEEEEEEE
Confidence 489999999999999976
No 114
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=44.14 E-value=73 Score=21.74 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=29.7
Q ss_pred HHHHHHHHH-cCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHH
Q 030836 100 LQLLEIAQR-EETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165 (170)
Q Consensus 100 ~~L~~li~e-~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~ 165 (170)
.+..+.+.+ ..++.||+.+-. .+..+ ..+++.|++..+ .+||+++-...+...+.+
T Consensus 39 ~~a~~~l~~~~~~dlvi~d~~l--~~~~g------~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~ 95 (154)
T 2qsj_A 39 SDALAFLEADNTVDLILLDVNL--PDAEA------IDGLVRLKRFDP--SNAVALISGETDHELIRA 95 (154)
T ss_dssp HHHHHHHHTTCCCSEEEECC--------C------HHHHHHHHHHCT--TSEEEEC-----CHHHHH
T ss_pred HHHHHHHhccCCCCEEEEeCCC--CCCch------HHHHHHHHHhCC--CCeEEEEeCCCCHHHHHH
Confidence 344455566 789999999643 22222 356677776653 789888754444333333
No 115
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=43.79 E-value=69 Score=21.26 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+.+.+..++.||+.+-.. ++..+ ..+++.|++. + .+||+++-...+...+.+.+
T Consensus 45 ~a~~~~~~~~~dlii~d~~~~-~~~~g------~~~~~~l~~~-~--~~~ii~ls~~~~~~~~~~~~ 101 (140)
T 3cg0_A 45 EAVRCAPDLRPDIALVDIMLC-GALDG------VETAARLAAG-C--NLPIIFITSSQDVETFQRAK 101 (140)
T ss_dssp HHHHHHHHHCCSEEEEESSCC-SSSCH------HHHHHHHHHH-S--CCCEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEecCCC-CCCCH------HHHHHHHHhC-C--CCCEEEEecCCCHHHHHHHH
Confidence 344555667899999996432 02221 3566666665 3 78998887666655554443
No 116
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=43.76 E-value=38 Score=27.35 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++.++..|++-.|-+..|..-+. +.+++.++..++. ++ .+.+||.++
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~~----~~-~li~De~~~ 205 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTC-DELEIMADLCERH----GV-RVISDEIHM 205 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCT-THHHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCH-HHHHHHHHHHHHc----CC-EEEEEcccc
Confidence 5678887776678888888898888876543 2445555544442 55 456888775
No 117
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=43.64 E-value=30 Score=24.17 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
+.+.+++++++++.++|..|.. + .+..+++++.+.+. ++.|..+-
T Consensus 55 ~~l~~~~~~~~id~viia~~~~-----~--~~~~~~i~~~l~~~----gv~v~~vP 99 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSA-----S--QVQKKVIIESLAKL----HVEVLTIP 99 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTS-----C--HHHHHHHHHHHHTT----TCEEEECC
T ss_pred HHHHHHHHHCCCCEEEEeCCCC-----C--HHHHHHHHHHHHHc----CCeEEECC
Confidence 3578888999999999997632 2 13456667777653 67777653
No 118
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=43.37 E-value=57 Score=23.76 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e 169 (170)
.+.+++.+.+++.||+| ..++ ...++|++. +|.|+...+ .|-.+|-+.|.+
T Consensus 67 ~~a~~L~~~gv~vVI~g-------~IG~------~a~~~L~~~----GI~v~~~~~-g~i~eal~~~~~ 117 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVR-------GIGR------RAIAAFEAM----GVKVIKGAS-GTVEEVVNQYLS 117 (136)
T ss_dssp CHHHHHHHTTCSEEECS-------CCCH------HHHHHHHHT----TCEEECSCC-SBHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEEC-------CCCH------HHHHHHHHC----CCEEEecCC-CCHHHHHHHHHh
Confidence 56777788999999999 3453 444567664 888887665 577777766653
No 119
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=42.91 E-value=94 Score=24.81 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=18.0
Q ss_pred ceEEEEecCCCeEEEEEecC
Q 030836 63 GFSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~ 82 (170)
+.+||||.|...|-+++.|.
T Consensus 3 ~~~lGiD~Gst~~k~~l~d~ 22 (270)
T 1hux_A 3 IYTLGIDVGSTASKCIILKD 22 (270)
T ss_dssp CEEEEEEECSSEEEEEEEET
T ss_pred cEEEEEEeccceEEEEEEeC
Confidence 36899999999999999884
No 120
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=42.66 E-value=74 Score=21.32 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=33.3
Q ss_pred HcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 108 REETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 108 e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
...++.|++.+-+. +..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 47 ~~~~dlvi~d~~l~--~~~g------~~~~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~ 96 (143)
T 3jte_A 47 CNSIDVVITDMKMP--KLSG------MDILREIKKITP--HMAVIILTGHGDLDNAILAM 96 (143)
T ss_dssp TTTCCEEEEESCCS--SSCH------HHHHHHHHHHCT--TCEEEEEECTTCHHHHHHHH
T ss_pred CCCCCEEEEeCCCC--CCcH------HHHHHHHHHhCC--CCeEEEEECCCCHHHHHHHH
Confidence 57899999997542 3222 467777777653 78999887766665555444
No 121
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=42.55 E-value=42 Score=27.05 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCEEEEeecCC---CCCCCChh-----------HHHHHHHHHHHHHhhccCCccEEEE
Q 030836 99 ELQLLEIAQREETDEFIIGLPKS---WDGSETPQ-----------SNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~---~dGt~s~~-----------~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
..++.+.+.+.++|.|-||.|.. +||..-+. ...+-..++.+++.+ .++||++.
T Consensus 33 ~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~Pv~lm 100 (268)
T 1qop_A 33 SLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKH--PTIPIGLL 100 (268)
T ss_dssp HHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SSSCEEEE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEE
Confidence 34555666778999999999997 55543221 123346677777762 26898763
No 122
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=42.49 E-value=74 Score=25.86 Aligned_cols=56 Identities=13% Similarity=0.303 Sum_probs=35.4
Q ss_pred HHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEE---EcCc--ccHHHHHHHHHc
Q 030836 105 IAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL---LDEH--RTSAEAVDRMIN 169 (170)
Q Consensus 105 li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~l---vDER--~TT~eA~~~L~e 169 (170)
.+++.++++||+|. ++.||+... ..++.+. +.. .+++|+| +|+- ---.+|-+.|++
T Consensus 84 ~~~~~GadGvV~G~-Lt~dg~iD~--~~~~~Li----~~a--~~~~vTFHRAFD~~~~~d~~~ale~L~~ 144 (224)
T 2bdq_A 84 RAVELESDALVLGI-LTSNNHIDT--EAIEQLL----PAT--QGLPLVFHMAFDVIPKSDQKKSIDQLVA 144 (224)
T ss_dssp HHHHTTCSEEEECC-BCTTSSBCH--HHHHHHH----HHH--TTCCEEECGGGGGSCTTTHHHHHHHHHH
T ss_pred HHHHcCCCEEEEee-ECCCCCcCH--HHHHHHH----HHh--CCCeEEEECchhccCCcCHHHHHHHHHH
Confidence 45678999999994 778898773 2223333 332 2788887 3665 444566655543
No 123
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=41.91 E-value=66 Score=22.43 Aligned_cols=51 Identities=8% Similarity=-0.014 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e 169 (170)
.+.+++.+.+++.||+| ..++ ...+.|++. ++.|+...+ .|-.+|-+.+.+
T Consensus 54 ~~~~~L~~~gv~~vi~~-------~iG~------~a~~~L~~~----GI~v~~~~~-~~v~eal~~~~~ 104 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTY-------GIGR------RAIEYFNSL----GISVVTGVY-GRISDVIKAFIG 104 (121)
T ss_dssp HHHHHHHHTTCCEEECS-------BCCH------HHHHHHHHT----TCEEECSBC-SBHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEC-------CCCH------hHHHHHHHC----CCEEEECCC-CCHHHHHHHHHc
Confidence 67777888999999999 2453 344567664 888887644 677787776653
No 124
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=41.90 E-value=76 Score=24.36 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
..+..++ ..++|+||+- |... .. . ....+.+.+. ++||+++|.
T Consensus 48 ~~i~~l~-~~~vdgiIi~-~~~~--~~--~----~~~~~~~~~~----~iPvV~~~~ 90 (283)
T 2ioy_A 48 SNVEDLI-QQKVDVLLIN-PVDS--DA--V----VTAIKEANSK----NIPVITIDR 90 (283)
T ss_dssp HHHHHHH-HTTCSEEEEC-CSST--TT--T----HHHHHHHHHT----TCCEEEESS
T ss_pred HHHHHHH-HcCCCEEEEe-CCch--hh--h----HHHHHHHHHC----CCeEEEecC
Confidence 3455555 6799999984 4321 11 1 1223444443 789998874
No 125
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=41.89 E-value=53 Score=26.95 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHH
Q 030836 128 PQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAV 164 (170)
Q Consensus 128 ~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~ 164 (170)
+..+.+.++.+.+++. +++++|++..+++..|+
T Consensus 216 ps~~~l~~l~~~ik~~----~v~~if~e~~~~~~~~~ 248 (294)
T 3hh8_A 216 GTPDQISSLIEKLKVI----KPSALFVESSVDRRPME 248 (294)
T ss_dssp CCHHHHHHHHHHHHHS----CCSCEEEETTSCSHHHH
T ss_pred CCHHHHHHHHHHHHHc----CCCEEEEeCCCCcHHHH
Confidence 3445555555555543 55555555555555444
No 126
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=41.40 E-value=63 Score=26.17 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCEE-EEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccH
Q 030836 99 ELQLLEIAQREETDEF-IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160 (170)
Q Consensus 99 ~~~L~~li~e~~v~~I-VVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT 160 (170)
.+.|.+.+++.++..| |+-.|-+..|..-+. +..+++++..++. ++. +.+||.++.
T Consensus 151 ~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~-~~l~~l~~~~~~~----~~~-li~De~~~~ 207 (397)
T 2zyj_A 151 LDALEEVLKRERPRFLYLIPSFQNPTGGLTPL-PARKRLLQMVMER----GLV-VVEDDAYRE 207 (397)
T ss_dssp HHHHHHHHHHCCCSCEEECCBSCTTTCCBCCH-HHHHHHHHHHHHH----TCC-EEEECTTTT
T ss_pred HHHHHHHHhhcCCeEEEECCCCcCCCCCcCCH-HHHHHHHHHHHHc----CCE-EEEeCCccc
Confidence 5678887877678876 568888888876543 3445555555443 554 558888763
No 127
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=41.34 E-value=65 Score=26.59 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=36.9
Q ss_pred HHHHHHHHHHc-----CCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccH
Q 030836 99 ELQLLEIAQRE-----ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160 (170)
Q Consensus 99 ~~~L~~li~e~-----~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT 160 (170)
.+.|.+.++++ ++..|++-.|-++.|..-+.. .+++.++..++. ++ ++.+||-++.
T Consensus 175 ~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~-~l~~l~~~~~~~----~~-~li~Dea~~~ 235 (435)
T 3piu_A 175 ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRN-ELYLLLSFVEDK----GI-HLISDEIYSG 235 (435)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHH-HHHHHHHHHHHH----TC-EEEEECTTGG
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHH-HHHHHHHHHHHc----CC-EEEEeccccc
Confidence 46777777653 677899999988888755433 355555555443 44 5668998653
No 128
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=41.22 E-value=80 Score=21.27 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHH--hhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAV--RAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~--~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+.+.+..++.||+.+-.. +..+ ..+++.|++ .. ..+||+++-...+...+.+.+
T Consensus 42 ~~a~~~l~~~~~dlii~d~~l~--~~~g------~~~~~~l~~~~~~--~~~pii~ls~~~~~~~~~~~~ 101 (147)
T 2zay_A 42 IEAVPVAVKTHPHLIITEANMP--KISG------MDLFNSLKKNPQT--ASIPVIALSGRATAKEEAQLL 101 (147)
T ss_dssp HHHHHHHHHHCCSEEEEESCCS--SSCH------HHHHHHHHTSTTT--TTSCEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEcCCCC--CCCH------HHHHHHHHcCccc--CCCCEEEEeCCCCHHHHHHHH
Confidence 3444555667899999996432 3222 467777776 33 378998886665555444433
No 129
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=41.13 E-value=55 Score=28.88 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.5
Q ss_pred CceEEEEecCCCeEEEEEecC
Q 030836 62 GGFSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD~ 82 (170)
...+||||+|+..+=+++.|.
T Consensus 25 ~~~~lgIDiGtts~k~~l~d~ 45 (520)
T 4e1j_A 25 GGYILAIDQGTTSTRAIVFDG 45 (520)
T ss_dssp SCEEEEEEECSSEEEEEEECT
T ss_pred hCeEEEEEeCCcceEEEEECC
Confidence 357999999999999999984
No 130
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=40.77 E-value=74 Score=20.74 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=33.0
Q ss_pred HHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHH
Q 030836 102 LLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165 (170)
Q Consensus 102 L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~ 165 (170)
..+++.+..++.+++.+- +.|..+ ..+++.|++..+ .+||+++-...+...+.+
T Consensus 39 a~~~~~~~~~dlvl~D~~--l~~~~g------~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~~ 92 (124)
T 1srr_A 39 ALDIVTKERPDLVLLDMK--IPGMDG------IEILKRMKVIDE--NIRVIIMTAYGELDMIQE 92 (124)
T ss_dssp HHHHHHHHCCSEEEEESC--CTTCCH------HHHHHHHHHHCT--TCEEEEEESSCCHHHHHH
T ss_pred HHHHHhccCCCEEEEecC--CCCCCH------HHHHHHHHHhCC--CCCEEEEEccCchHHHHH
Confidence 334455678999999863 333322 356667766543 789988865545444443
No 131
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=40.68 E-value=59 Score=25.56 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 97 KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 97 ~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
...+.|.++++++++|.||+|- .|..+-.....-..++.+-... .+||..+-
T Consensus 253 ~~~~~I~~~a~~~~~dLiV~G~----~g~~~~~~~~~Gsv~~~vl~~~---~~pVLvv~ 304 (319)
T 3olq_A 253 LPEQVIPQVCEELNAGIVVLGI----LGRTGLSAAFLGNTAEQLIDHI---KCDLLAIK 304 (319)
T ss_dssp CHHHHHHHHHHHTTEEEEEEEC----CSCCSTHHHHHHHHHHHHHTTC---CSEEEEEC
T ss_pred CcHHHHHHHHHHhCCCEEEEec----cCccCCccccccHHHHHHHhhC---CCCEEEEC
Confidence 4567899999999999999993 2333332233445566666553 68888773
No 132
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=40.22 E-value=46 Score=22.58 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=37.5
Q ss_pred HHHHHHHHH-cCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQR-EETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e-~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+.+..+.+. ..++.||+.+-+ .+. ....+++.|++..+ .+||+++-...+...+.+.+
T Consensus 56 ~~~~~~~~~~~~~dlvi~D~~l--~~~------~g~~~~~~l~~~~~--~~~ii~lt~~~~~~~~~~~~ 114 (146)
T 4dad_A 56 AQIVQRTDGLDAFDILMIDGAA--LDT------AELAAIEKLSRLHP--GLTCLLVTTDASSQTLLDAM 114 (146)
T ss_dssp HHHTTCHHHHTTCSEEEEECTT--CCH------HHHHHHHHHHHHCT--TCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEeCCC--CCc------cHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHH
Confidence 345555566 899999998633 221 12467777777653 78999887666666555544
No 133
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=40.20 E-value=44 Score=26.18 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeec
Q 030836 96 EKLELQLLEIAQREETDEFIIGLP 119 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlP 119 (170)
....+.|.+.++++++|.||+|..
T Consensus 75 g~~~~~i~~~a~~~~~dliV~G~~ 98 (290)
T 3mt0_A 75 DSLHQTIIAEQQAEGCGLIIKQHF 98 (290)
T ss_dssp SSHHHHHHHHHHHHTCSEEEEECC
T ss_pred CCHHHHHHHHHHhcCCCEEEEecc
Confidence 456788999999999999999965
No 134
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=40.16 E-value=65 Score=20.75 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAV 164 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~ 164 (170)
+..+.+.+..++.|++.+-.. ++..+ ..+++.|++......+||+++ ...+.....
T Consensus 40 ~a~~~~~~~~~dlvi~d~~~~-~~~~g------~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~ 95 (127)
T 2gkg_A 40 GSVEQIRRDRPDLVVLAVDLS-AGQNG------YLICGKLKKDDDLKNVPIVII-GNPDGFAQH 95 (127)
T ss_dssp HHHHHHHHHCCSEEEEESBCG-GGCBH------HHHHHHHHHSTTTTTSCEEEE-ECGGGHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCC-CCCCH------HHHHHHHhcCccccCCCEEEE-ecCCchhHH
Confidence 334455667899999986432 02111 356777776511137899988 555544443
No 135
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=39.82 E-value=24 Score=23.36 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.3
Q ss_pred eEEEEecCCCeEEEEEe
Q 030836 64 FSLGVDLGLSRTGLALS 80 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvs 80 (170)
.+.-+|.|.+|||+|-.
T Consensus 70 ~y~vfD~~~~riGfA~~ 86 (87)
T 1b5f_B 70 YHTVFDYGNLLVGFAEA 86 (87)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCEEEEEEc
Confidence 46679999999999954
No 136
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=39.73 E-value=81 Score=20.91 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHH--hhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAV--RAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~--~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+.+.+..++.||+.+-+ .+..+ ..+++.|++ .. ..+||+++-...+...+.+.+
T Consensus 44 ~~a~~~l~~~~~dlii~d~~l--~~~~g------~~~~~~l~~~~~~--~~~~ii~~s~~~~~~~~~~~~ 103 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLMM--VGMDG------FSICHRIKSTPAT--ANIIVIAMTGALTDDNVSRIV 103 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETTC--TTSCH------HHHHHHHHTSTTT--TTSEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeccc--CCCcH------HHHHHHHHhCccc--cCCcEEEEeCCCCHHHHHHHH
Confidence 344556667889999999643 23222 466777776 33 378998886665555444443
No 137
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=39.64 E-value=48 Score=27.02 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
+.+.+ +.+.+.|.|.|| |+.+-..+.+.+..+++++ . ++||++.
T Consensus 27 ~~l~~-~~~~GtDaI~vG------gs~gvt~~~~~~~v~~ik~-~---~~Piil~ 70 (235)
T 3w01_A 27 DDLDA-ICMSQTDAIMIG------GTDDVTEDNVIHLMSKIRR-Y---PLPLVLE 70 (235)
T ss_dssp HHHHH-HHTSSCSEEEEC------CSSCCCHHHHHHHHHHHTT-S---CSCEEEE
T ss_pred HHHHH-HHHcCCCEEEEC------CcCCcCHHHHHHHHHHhcC-c---CCCEEEe
Confidence 34444 357799999999 6766677888889999986 3 7999874
No 138
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=39.60 E-value=95 Score=21.68 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e 169 (170)
.+.+++.+.+++.||+| ..++ ...+.|.+. +|.|+... ..+-.+|-+.+.+
T Consensus 56 ~~~~~l~~~gv~~vi~~-------~iG~------~a~~~L~~~----GI~v~~~~-~~~i~eal~~~~~ 106 (124)
T 1eo1_A 56 RTAQIIANNGVKAVIAS-------SPGP------NAFEVLNEL----GIKIYRAT-GTSVEENLKLFTE 106 (124)
T ss_dssp THHHHHHHTTCCEEEEC-------CSSH------HHHHHHHHH----TCEEEECC-SCCHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEEC-------CcCH------HHHHHHHHC----CCEEEEcC-CCCHHHHHHHHHh
Confidence 57777888999999999 2453 444567665 88888864 4677777766653
No 139
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=39.41 E-value=99 Score=23.18 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
..+..++...++|+||+. |.+ .... ..+.+.+.+. ++||+++|..
T Consensus 49 ~~i~~l~~~~~vdgii~~-~~~--~~~~------~~~~~~~~~~----~ipvV~~~~~ 93 (276)
T 3ksm_A 49 QILSYHLSQAPPDALILA-PNS--AEDL------TPSVAQYRAR----NIPVLVVDSD 93 (276)
T ss_dssp HHHHHHHHHSCCSEEEEC-CSS--TTTT------HHHHHHHHHT----TCCEEEESSC
T ss_pred HHHHHHHHhCCCCEEEEe-CCC--HHHH------HHHHHHHHHC----CCcEEEEecC
Confidence 456666665449999986 221 1111 3445556553 7899988754
No 140
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=39.34 E-value=91 Score=24.94 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.++++++..|++-.|-++.|..-+. +.+ .+|.+.. + -++.+||.++
T Consensus 153 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~-~~l----~~l~~~~---~-~~li~De~~~ 204 (369)
T 3cq5_A 153 MDVALEEIRAKQPDIVFVTTPNNPTGDVTSL-DDV----ERIINVA---P-GIVIVDEAYA 204 (369)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCTTTCCCCCH-HHH----HHHHHHC---S-SEEEEECTTG
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCCCCCH-HHH----HHHHHhC---C-CEEEEECCch
Confidence 5677777776688999998888888876652 222 3333332 4 3677899876
No 141
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=39.25 E-value=1.2e+02 Score=23.02 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
.+..+ ...++|+||+. |...+. +....+.+.+. ++||+++|...
T Consensus 56 ~~~~l-~~~~vdgiI~~-~~~~~~--------~~~~~~~~~~~----~iPvV~~~~~~ 99 (293)
T 3l6u_A 56 QILEF-VHLKVDAIFIT-TLDDVY--------IGSAIEEAKKA----GIPVFAIDRMI 99 (293)
T ss_dssp HHHHH-HHTTCSEEEEE-CSCTTT--------THHHHHHHHHT----TCCEEEESSCC
T ss_pred HHHHH-HHcCCCEEEEe-cCChHH--------HHHHHHHHHHc----CCCEEEecCCC
Confidence 34444 45799999986 322111 12334455543 78999988543
No 142
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=38.77 E-value=1.2e+02 Score=23.37 Aligned_cols=44 Identities=9% Similarity=-0.123 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
.+..++ ..++|+||+. |...+.. ....+.+.+. ++||+++|...
T Consensus 53 ~i~~l~-~~~vdgiii~-~~~~~~~--------~~~~~~~~~~----giPvV~~~~~~ 96 (297)
T 3rot_A 53 FIESAL-ATYPSGIATT-IPSDTAF--------SKSLQRANKL----NIPVIAVDTRP 96 (297)
T ss_dssp HHHHHH-HTCCSEEEEC-CCCSSTT--------HHHHHHHHHH----TCCEEEESCCC
T ss_pred HHHHHH-HcCCCEEEEe-CCCHHHH--------HHHHHHHHHC----CCCEEEEcCCC
Confidence 344444 5689999996 3221111 2344555554 79999998554
No 143
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=38.71 E-value=75 Score=25.64 Aligned_cols=52 Identities=10% Similarity=-0.027 Sum_probs=34.8
Q ss_pred HHHHHHHHHHc---CCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQRE---ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~---~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++. ++..|++..|-++.|..-+ +++.++..++. ++ .+.+||-++
T Consensus 159 ~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~----~~-~li~De~~~ 213 (398)
T 3a2b_A 159 MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEF----DA-AVMVDDAHS 213 (398)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHc----Cc-EEEEECCCc
Confidence 46677777765 6888999999888887665 23333333332 44 567898875
No 144
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=37.97 E-value=97 Score=22.19 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCC
Q 030836 100 LQLLEIAQREETDEFIIGLPKS 121 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~ 121 (170)
..+.+.+...+++.|||-+-.|
T Consensus 52 ~~~~~~~~~~~pd~Vii~~G~N 73 (190)
T 1ivn_A 52 ARLPALLKQHQPRWVLVELGGN 73 (190)
T ss_dssp HHHHHHHHHHCCSEEEEECCTT
T ss_pred HHHHHHHHhcCCCEEEEEeecc
Confidence 3455555555566666654333
No 145
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=37.92 E-value=86 Score=25.99 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=35.8
Q ss_pred HHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEE---EcCcccHHHHHHHHHc
Q 030836 105 IAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL---LDEHRTSAEAVDRMIN 169 (170)
Q Consensus 105 li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~l---vDER~TT~eA~~~L~e 169 (170)
.+++.++++||+|. ++.||+... ...++|-+.. .+++++| +|+----.+|-+.|++
T Consensus 81 ~~~~~GadGvV~G~-Lt~dg~iD~------~~~~~Li~~a--~~~~vTFHRAfD~~~d~~~ale~L~~ 139 (256)
T 1twd_A 81 TVRELGFPGLVTGV-LDVDGNVDM------PRMEKIMAAA--GPLAVTFHRAFDMCANPLYTLNNLAE 139 (256)
T ss_dssp HHHHTTCSEEEECC-BCTTSSBCH------HHHHHHHHHH--TTSEEEECGGGGGCSCHHHHHHHHHH
T ss_pred HHHHcCCCEEEEee-ECCCCCcCH------HHHHHHHHHh--CCCcEEEECchhccCCHHHHHHHHHH
Confidence 45688999999994 778898773 2222333332 2688887 4665555666655543
No 146
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=37.84 E-value=73 Score=24.52 Aligned_cols=45 Identities=11% Similarity=0.012 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
...+.+++...++|+||+- |... .. ...+.+.+. ++||+++|...
T Consensus 55 ~~~~~~~l~~~~vdgiIi~-~~~~----~~------~~~~~l~~~----~iPvV~i~~~~ 99 (288)
T 3gv0_A 55 MVPIRYILETGSADGVIIS-KIEP----ND------PRVRFMTER----NMPFVTHGRSD 99 (288)
T ss_dssp THHHHHHHHHTCCSEEEEE-SCCT----TC------HHHHHHHHT----TCCEEEESCCC
T ss_pred HHHHHHHHHcCCccEEEEe-cCCC----Cc------HHHHHHhhC----CCCEEEECCcC
Confidence 3567777778899999985 3221 11 233455443 78999888643
No 147
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=37.77 E-value=90 Score=20.89 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAV 164 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~ 164 (170)
+..+++.+..++.|++.+-. .|..+ ..+++.|++..+ .+||+++-...+...+.
T Consensus 35 ~a~~~~~~~~~dlvl~D~~l--p~~~g------~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~ 88 (139)
T 2jk1_A 35 AAIAILEEEWVQVIICDQRM--PGRTG------VDFLTEVRERWP--ETVRIIITGYTDSASMM 88 (139)
T ss_dssp HHHHHHHHSCEEEEEEESCC--SSSCH------HHHHHHHHHHCT--TSEEEEEESCTTCHHHH
T ss_pred HHHHHHhcCCCCEEEEeCCC--CCCcH------HHHHHHHHHhCC--CCcEEEEeCCCChHHHH
Confidence 34455566789999998633 23322 356667766543 67888774444433333
No 148
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=37.60 E-value=1e+02 Score=26.80 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=17.4
Q ss_pred eEEEEecCCCeEEEEEecC
Q 030836 64 FSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~ 82 (170)
.+||||+|+-.|=+++.|.
T Consensus 3 ~~lgiDiGtT~~k~~l~d~ 21 (495)
T 2dpn_A 3 FLLALDQGTTSSRAILFTL 21 (495)
T ss_dssp CEEEEEECSSEEEEEEECT
T ss_pred EEEEEeeCCcceEEEEECC
Confidence 5899999999999999984
No 149
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=37.59 E-value=85 Score=20.55 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+.+.+..++.+++.+- +.|..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 38 ~~~~~~~~~~~dlvi~D~~--l~~~~g------~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~ 94 (126)
T 1dbw_A 38 AFLAFAPDVRNGVLVTDLR--MPDMSG------VELLRNLGDLKI--NIPSIVITGHGDVPMAVEAM 94 (126)
T ss_dssp HHHHHGGGCCSEEEEEECC--STTSCH------HHHHHHHHHTTC--CCCEEEEECTTCHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECC--CCCCCH------HHHHHHHHhcCC--CCCEEEEECCCCHHHHHHHH
Confidence 3445566778999998853 223222 356677776543 78998886655555554444
No 150
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=37.47 E-value=57 Score=27.24 Aligned_cols=38 Identities=5% Similarity=0.049 Sum_probs=29.9
Q ss_pred CChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 126 ~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
..+..+.+.++.+.+++. +++++|+++.+++..|+.+-
T Consensus 235 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~iA 272 (321)
T 1xvl_A 235 QQFTPKQVQTVIEEVKTN----NVPTIFCESTVSDKGQKQVA 272 (321)
T ss_dssp CSCCHHHHHHHHHHHHTT----TCSEEEEETTSCSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc----CCcEEEEeCCCChHHHHHHH
Confidence 456677888888888765 78999999998888877653
No 151
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=37.36 E-value=92 Score=23.70 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
..+.+.+...++|+||+-- ... ....+.+.+. ++||+++|...
T Consensus 53 ~~~~~~l~~~~vdgiIi~~------~~~------~~~~~~l~~~----~iPvV~i~~~~ 95 (276)
T 3jy6_A 53 KTLLRAIGSRGFDGLILQS------FSN------PQTVQEILHQ----QMPVVSVDREM 95 (276)
T ss_dssp HHHHHHHHTTTCSEEEEES------SCC------HHHHHHHHTT----SSCEEEESCCC
T ss_pred HHHHHHHHhCCCCEEEEec------CCc------HHHHHHHHHC----CCCEEEEeccc
Confidence 3455555577999999972 111 2344555543 78999998654
No 152
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=37.22 E-value=97 Score=24.53 Aligned_cols=55 Identities=11% Similarity=-0.046 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccH
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT 160 (170)
.+.|.+.+.+ +...+++-.|-+..|..-+.. .+++.++..++. ++ ++.+||-++.
T Consensus 140 ~~~l~~~l~~-~~~~v~i~~p~nptG~~~~~~-~l~~l~~~~~~~----~~-~li~De~~~~ 194 (377)
T 3fdb_A 140 LHDVEKGFQA-GARSILLCNPYNPLGMVFAPE-WLNELCDLAHRY----DA-RVLVDEIHAP 194 (377)
T ss_dssp HHHHHHHHHT-TCCEEEEESSBTTTTBCCCHH-HHHHHHHHHHHT----TC-EEEEECTTGG
T ss_pred HHHHHHHhcc-CCCEEEEeCCCCCCCCCCCHH-HHHHHHHHHHHc----CC-EEEEEcccch
Confidence 4677777765 478999999988888765433 355565544442 54 4567888763
No 153
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=37.13 E-value=56 Score=26.67 Aligned_cols=37 Identities=3% Similarity=0.113 Sum_probs=30.8
Q ss_pred CChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 126 ~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
..+..+.+.++.+.+++. +++++|++..+++..|+.+
T Consensus 219 ~eps~~~l~~l~~~ik~~----~v~~If~e~~~~~~~~~~i 255 (291)
T 1pq4_A 219 QEPSAQELKQLIDTAKEN----NLTMVFGETQFSTKSSEAI 255 (291)
T ss_dssp BCCCHHHHHHHHHHHHTT----TCCEEEEETTSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc----CCCEEEEeCCCChHHHHHH
Confidence 456778888999888875 8999999999998888754
No 154
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=36.75 E-value=84 Score=20.24 Aligned_cols=56 Identities=5% Similarity=0.040 Sum_probs=33.9
Q ss_pred HHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 102 LLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 102 L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
..+.+.+..++.|++.+-. .|..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 39 a~~~~~~~~~dlil~D~~l--~~~~g------~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~ 94 (120)
T 1tmy_A 39 AVEKYKELKPDIVTMDITM--PEMNG------IDAIKEIMKIDP--NAKIIVCSAMGQQAMVIEAI 94 (120)
T ss_dssp HHHHHHHHCCSEEEEECSC--GGGCH------HHHHHHHHHHCT--TCCEEEEECTTCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCC--CCCcH------HHHHHHHHhhCC--CCeEEEEeCCCCHHHHHHHH
Confidence 3344566789999998643 22222 356777776543 68988886555554444433
No 155
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=36.71 E-value=75 Score=23.31 Aligned_cols=49 Identities=8% Similarity=-0.042 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
.+++.+.+.+.++|.||+.-=+...| ...+.+..+.+.|++. +.|++++
T Consensus 21 ~~~~~~~~~~~~~D~vi~~GDl~~~~---~~~~~~~~~~~~l~~~----~~pv~~v 69 (228)
T 1uf3_A 21 LEKFVKLAPDTGADAIALIGNLMPKA---AKSRDYAAFFRILSEA----HLPTAYV 69 (228)
T ss_dssp HHHHHTHHHHHTCSEEEEESCSSCTT---CCHHHHHHHHHHHGGG----CSCEEEE
T ss_pred HHHHHHHHhhcCCCEEEECCCCCCCC---CCHHHHHHHHHHHHhc----CCcEEEE
Confidence 45566666677999887762111111 1234556777777653 5788887
No 156
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=36.63 E-value=1.2e+02 Score=23.32 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
.+..+ ...++|+||+- |...+ . .....+++.+. ++||+++|...
T Consensus 53 ~i~~l-~~~~vdgiIi~-~~~~~--~------~~~~~~~~~~~----~iPvV~~~~~~ 96 (305)
T 3g1w_A 53 VLEQA-IAKNPAGIAIS-AIDPV--E------LTDTINKAVDA----GIPIVLFDSGA 96 (305)
T ss_dssp HHHHH-HHHCCSEEEEC-CSSTT--T------THHHHHHHHHT----TCCEEEESSCC
T ss_pred HHHHH-HHhCCCEEEEc-CCCHH--H------HHHHHHHHHHC----CCcEEEECCCC
Confidence 34444 45699999985 22211 1 12344555543 78999998643
No 157
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=36.19 E-value=58 Score=26.25 Aligned_cols=55 Identities=9% Similarity=0.123 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++.++..|++-.|-+..|..-+. +.++++++..++. ++ .+.+||-++
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~-~~l~~i~~~~~~~----~~-~li~De~~~ 207 (399)
T 1c7n_A 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWKK-DELQKIKDIVLKS----DL-MLWSDEIHF 207 (399)
T ss_dssp HHHHHHHHTCTTEEEEEEESSBTTTTBCCCH-HHHHHHHHHHHHS----SC-EEEEECTTT
T ss_pred HHHHHHHhccCCCcEEEEcCCCCCCCcCcCH-HHHHHHHHHHHHc----CC-EEEEEcccc
Confidence 5678887765678888888888877865442 3455666555442 54 556788775
No 158
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=36.09 E-value=82 Score=25.82 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=36.7
Q ss_pred HHHHHHHHHHc-----CCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccH
Q 030836 99 ELQLLEIAQRE-----ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160 (170)
Q Consensus 99 ~~~L~~li~e~-----~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT 160 (170)
.+.|.+.++++ ++..|++-.|-++.|..-+. +.++++++..++ +++ ++.+||-++-
T Consensus 172 ~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~----~~~-~li~Dea~~~ 232 (428)
T 1iay_A 172 SKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDK-DTLKSVLSFTNQ----HNI-HLVCDEIYAA 232 (428)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCH-HHHHHHHHHHHT----TTC-EEEEECTTGG
T ss_pred HHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCH-HHHHHHHHHHHH----CCe-EEEEeccccc
Confidence 46677777652 67788999998888876543 345566654433 254 5668998763
No 159
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=36.07 E-value=88 Score=23.69 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCCEEEEe
Q 030836 99 ELQLLEIAQREETDEFIIG 117 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVG 117 (170)
++++.+.+.+.++|.||+.
T Consensus 21 ~~~~l~~~~~~~~D~vi~~ 39 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVV 39 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEC
Confidence 4556666667799988877
No 160
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=35.72 E-value=1.8e+02 Score=28.15 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=37.9
Q ss_pred ceEEEEec----CCCeEEEEEecCC-eeEEeEEEEccchhHHHHHHHHHHHcCCCEEEEe
Q 030836 63 GFSLGVDL----GLSRTGLALSKGF-CVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117 (170)
Q Consensus 63 g~iLgID~----G~kRiGVAvsD~~-~a~Pl~~i~~~~~~~~~~L~~li~e~~v~~IVVG 117 (170)
..++||-. +.+++|+|..|.. .-.-+.-+. .......|...+...+|.+||+.
T Consensus 145 ~~l~AIk~~~~~~~~~~Gla~~D~stge~~~~~~~--d~~~~~~l~~~l~~~~P~Eil~~ 202 (934)
T 3thx_A 145 IGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFP--DNDQFSNLEALLIQIGPKECVLP 202 (934)
T ss_dssp CCEEEEEECCSSSSCEEEEEEEETTTTEEEEEEEE--CCTTCHHHHHHHHHHCCSEEEEE
T ss_pred ceEEEEEEeecCCCcEEEEEEEECCCCeEEEEecC--CchHHHHHHHHHHhCCCeEEEee
Confidence 37889877 6789999999954 333344443 22334568888888999999996
No 161
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=35.46 E-value=84 Score=27.40 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=17.6
Q ss_pred eEEEEecCCCeEEEEEecC
Q 030836 64 FSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~ 82 (170)
.+||||+|+..+=+++.|.
T Consensus 3 ~~lgiDiGtts~k~~l~d~ 21 (504)
T 2d4w_A 3 YVLAIDQGTTSSRAIVFDH 21 (504)
T ss_dssp EEEEEEECSSEEEEEEECT
T ss_pred EEEEEecCCcceEEEEECC
Confidence 6899999999999999994
No 162
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=35.46 E-value=1e+02 Score=20.95 Aligned_cols=57 Identities=11% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHHHHHHHcC-CCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREE-TDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~-v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+.+.+.. ++.||+.+-+ .+..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 38 ~a~~~l~~~~~~dlvi~D~~l--~~~~g------~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~ 95 (151)
T 3kcn_A 38 EALACIKKSDPFSVIMVDMRM--PGMEG------TEVIQKARLISP--NSVYLMLTGNQDLTTAMEAV 95 (151)
T ss_dssp HHHHHHHHSCCCSEEEEESCC--SSSCH------HHHHHHHHHHCS--SCEEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHcCCCCCEEEEeCCC--CCCcH------HHHHHHHHhcCC--CcEEEEEECCCCHHHHHHHH
Confidence 3444555666 5999998643 23222 466777777654 78999887766665555444
No 163
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=35.42 E-value=75 Score=25.25 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccC--CccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAER--GWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~--~lpV~lvDER~T 159 (170)
.+.|.+.+.++++..|++-.|-+..|..-+.. .++++++..++ + ++ ++.+||-++
T Consensus 146 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~-~l~~i~~~~~~----~~~~~-~li~De~~~ 202 (367)
T 3euc_A 146 RGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAA-DMEAIVRAAQG----SVCRS-LVVVDEAYQ 202 (367)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCTTTCCCCCHH-HHHHHHHHTBT----TSCBC-EEEEECTTC
T ss_pred HHHHHHHhhccCCCEEEEcCCCCCCCCCCCHH-HHHHHHHhhhh----cCCCc-EEEEeCcch
Confidence 57788888877899999988988878765432 24444433322 3 34 456799876
No 164
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=35.35 E-value=50 Score=27.39 Aligned_cols=53 Identities=17% Similarity=0.121 Sum_probs=35.5
Q ss_pred HHHHHHHHHHc---CCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccH
Q 030836 99 ELQLLEIAQRE---ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160 (170)
Q Consensus 99 ~~~L~~li~e~---~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT 160 (170)
.+.|.+.+++. ++..|++--|.++.|..-+ +++.++..++ +++ ++.+||-++.
T Consensus 180 ~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~----~g~-~li~Dea~~~ 235 (427)
T 2w8t_A 180 VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKK----HGA-MVLVDEAHSM 235 (427)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHH----TTC-EEEEECTTTT
T ss_pred HHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHH----cCC-EEEEECCccc
Confidence 46777777765 6788999988888897665 3333333333 254 5678998764
No 165
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=35.17 E-value=1.7e+02 Score=23.89 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCCCChh----HHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQ----SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~----~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
..+++.+++.+.++++|++. |+.++. .++-+++++...+... -.+||+.-==..+|.+|-+..+
T Consensus 29 ~l~~lv~~li~~Gv~gl~~~------GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~ 96 (297)
T 3flu_A 29 QLRDLIDWHIENGTDGIVAV------GTTGESATLSVEEHTAVIEAVVKHVA-KRVPVIAGTGANNTVEAIALSQ 96 (297)
T ss_dssp HHHHHHHHHHHTTCCEEEES------STTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeC------ccccCcccCCHHHHHHHHHHHHHHhC-CCCcEEEeCCCcCHHHHHHHHH
Confidence 34566666667899999997 665551 1222333333333332 1478887666678888876543
No 166
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=34.82 E-value=66 Score=24.49 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCC-CCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDG-SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dG-t~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
++.+.+...++|+||+- |..... ... ..+.+.+.+. ++||+++|...
T Consensus 62 ~~~~~l~~~~vdgiIi~-~~~~~~~~~~------~~~~~~~~~~----~iPvV~~~~~~ 109 (298)
T 3tb6_A 62 RGLENLLSQHIDGLIVE-PTKSALQTPN------IGYYLNLEKN----GIPFAMINASY 109 (298)
T ss_dssp HHHHHHHHTCCSEEEEC-CSSTTSCCTT------HHHHHHHHHT----TCCEEEESSCC
T ss_pred HHHHHHHHCCCCEEEEe-cccccccCCc------HHHHHHHHhc----CCCEEEEecCc
Confidence 34444446899999985 322111 111 2344555553 78999888544
No 167
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=34.75 E-value=1e+02 Score=20.70 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+++.+..+|.|++.+-+ .|..+ ..+++.|++..+ .+||+++-...+...+.+.+
T Consensus 39 ~a~~~l~~~~~dlvllD~~l--~~~~g------~~l~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~ 95 (137)
T 3cfy_A 39 DAIQFIERSKPQLIILDLKL--PDMSG------EDVLDWINQNDI--PTSVIIATAHGSVDLAVNLI 95 (137)
T ss_dssp HHHHHHHHHCCSEEEECSBC--SSSBH------HHHHHHHHHTTC--CCEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEecCC--CCCCH------HHHHHHHHhcCC--CCCEEEEEecCcHHHHHHHH
Confidence 34455566789999998643 23222 356667766543 68888886655555554443
No 168
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=34.72 E-value=36 Score=26.73 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 97 KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 97 ~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
...+.|.++++++++|.||+|-- |..+-.....-..++.+-... .+||..+-
T Consensus 224 ~~~~~I~~~a~~~~~dLiVmG~~----g~~~~~~~~~Gsv~~~vl~~~---~~pVLvv~ 275 (290)
T 3mt0_A 224 PADVLIPRTAQKLDAVVTVIGTV----ARTGLSGALIGNTAEVVLDTL---ESDVLVLK 275 (290)
T ss_dssp CHHHHHHHHHHHHTCSEEEEECC----SSCCGGGCCSCHHHHHHHTTC---SSEEEEEC
T ss_pred CHHHHHHHHHHhcCCCEEEECCC----CCcCCcceecchHHHHHHhcC---CCCEEEEC
Confidence 45678888999999999999942 222211111224455555543 68988874
No 169
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=34.70 E-value=27 Score=30.28 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=18.3
Q ss_pred CCceEEEEecCCCeEEEEEec
Q 030836 61 RGGFSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 61 ~~g~iLgID~G~kRiGVAvsD 81 (170)
....+||||+|+..+=+++.|
T Consensus 2 ~~~~~lgiDiGtts~k~~l~d 22 (489)
T 2uyt_A 2 TFRNCVAVDLGASSGRVMLAR 22 (489)
T ss_dssp CCEEEEEEEECSSEEEEEEEE
T ss_pred CcceEEEEEecCCCceEEEEE
Confidence 445799999999999999988
No 170
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=34.63 E-value=93 Score=24.05 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
..+.+.+...++|+||+-- ... +. ...+.+.+. ++||+++|..
T Consensus 55 ~~~~~~l~~~~vdGiIi~~-~~~----~~------~~~~~l~~~----~iPvV~~~~~ 97 (294)
T 3qk7_A 55 QSLIHLVETRRVDALIVAH-TQP----ED------FRLQYLQKQ----NFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHTCCSEEEECS-CCS----SC------HHHHHHHHT----TCCEEEESCC
T ss_pred HHHHHHHHcCCCCEEEEeC-CCC----Ch------HHHHHHHhC----CCCEEEECCC
Confidence 4677777788999999862 211 11 233445443 7899988864
No 171
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=34.39 E-value=1e+02 Score=20.47 Aligned_cols=57 Identities=9% Similarity=0.030 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+.+.+..++.|++.+-. .|..+ ..+++.|++..+ ++||+++-...+...+.+.+
T Consensus 38 ~al~~~~~~~~dlvl~D~~l--~~~~g------~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~ 94 (132)
T 3crn_A 38 EGLAKIENEFFNLALFXIKL--PDMEG------TELLEKAHKLRP--GMKKIMVTGYASLENSVFSL 94 (132)
T ss_dssp HHHHHHHHSCCSEEEECSBC--SSSBH------HHHHHHHHHHCT--TSEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEecCC--CCCch------HHHHHHHHhhCC--CCcEEEEeccccHHHHHHHH
Confidence 34455567889999998643 23222 356667766543 78998886555555444443
No 172
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=34.06 E-value=1.2e+02 Score=21.13 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=32.2
Q ss_pred EEEEeecCCCCCCCChhH-HHHHHHHHHHHHhhccCCccEEEEc-CcccHHHHHHHH
Q 030836 113 EFIIGLPKSWDGSETPQS-NKVRSVAGRLAVRAAERGWRVYLLD-EHRTSAEAVDRM 167 (170)
Q Consensus 113 ~IVVGlPl~~dGt~s~~~-~~vr~F~~~L~~~~~~~~lpV~lvD-ER~TT~eA~~~L 167 (170)
.|+|| .|+..+.+ ..+..|++.|+++. ..+.+.+++ ..-|-.+|-+.|
T Consensus 8 lllv~-----HGS~~~~~~~~~~~l~~~l~~~~--~~V~~a~le~~~P~l~~~l~~l 57 (126)
T 3lyh_A 8 IILLA-----HGSSDARWCETFEKLAEPTVESI--ENAAIAYMELAEPSLDTIVNRA 57 (126)
T ss_dssp EEEEE-----CCCSCHHHHHHHHHHHHHHHHHS--TTCEEEESSSSSSBHHHHHHHH
T ss_pred EEEEe-----CCCCCHHHHHHHHHHHHHHHhhc--CCEEEEEEeCCCCCHHHHHHHH
Confidence 57788 68887743 45788888888775 256666776 555656665554
No 173
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=33.94 E-value=80 Score=21.96 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e 169 (170)
..+.+++.+.+++.||+| ..++ ...+.|.+. ++.|+...+-.+-.+|-+.+.+
T Consensus 57 ~~~~~~l~~~gv~~vi~~-------~iG~------~a~~~L~~~----GI~v~~~~~g~~i~eal~~~~~ 109 (120)
T 2wfb_A 57 INAAQVLAKSGAGVLLTG-------YVGP------KAFQALQAA----GIKVGQDLEGLTVRQAVQRFLD 109 (120)
T ss_dssp HHHHHHHHHHTEEEEECS-------CCCH------HHHHHHHHT----TCEEECCCTTSBHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEC-------CCCH------hHHHHHHHC----CCEEEEcCCCCcHHHHHHHHHc
Confidence 357777777999999999 2453 344567664 8888887654477787766653
No 174
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=33.77 E-value=69 Score=27.49 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCC---ChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSE---TPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~---s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
...+++++.+++++.|||=.+-.+.+.. ....+.+..+.+.|+....+.++||+++-+
T Consensus 302 ~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 302 RAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp HHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3456667777899999999887765432 123445566665555321123899998854
No 175
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=33.69 E-value=81 Score=26.97 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCC--C---ChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDGS--E---TPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dGt--~---s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
....+++++.+++++.|||=+--.+.+. . ....+.+..+...|+....+.++||++.-+
T Consensus 298 l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 298 VRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp HHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3456778888899999999876555432 1 123445566666665332224899998754
No 176
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=33.68 E-value=83 Score=21.90 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=27.7
Q ss_pred EEEEeecCCCCCCCChhH-HHHHHHHHHHHHhhccCCccEEEEc--CcccHHHH
Q 030836 113 EFIIGLPKSWDGSETPQS-NKVRSVAGRLAVRAAERGWRVYLLD--EHRTSAEA 163 (170)
Q Consensus 113 ~IVVGlPl~~dGt~s~~~-~~vr~F~~~L~~~~~~~~lpV~lvD--ER~TT~eA 163 (170)
.|+|| .|+..+.+ ..+..+++.|+++++...+.+-|++ ..-|-.+|
T Consensus 6 lllv~-----HGS~~~~~~~~~~~la~~l~~~~~~~~V~~a~le~~~~Psl~~~ 54 (133)
T 2xws_A 6 LVIVG-----HGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEA 54 (133)
T ss_dssp EEEEE-----CSCCCHHHHHHHHHHHHHHHHHTSSSEEEEEESSTTCSSCHHHH
T ss_pred EEEEE-----CCCCCHHHHHHHHHHHHHHHhhCCCCcEEeeeeecCCCCCHHHH
Confidence 57788 68877544 4678888888887541123334555 44444444
No 177
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=33.29 E-value=75 Score=24.79 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHH-HHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 97 KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSN-KVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 97 ~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~-~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
...+.| +++++++|.||+|.. |. +...+ ..-..++.+-... ..||..+-+..
T Consensus 112 ~~~~~I--~a~~~~~DliV~G~~----g~-~~~~~~~~Gs~~~~vl~~~---~~PVlvv~~~~ 164 (294)
T 3loq_A 112 DPVVEI--IKASENYSFIAMGSR----GA-SKFKKILLGSVSEGVLHDS---KVPVYIFKHDM 164 (294)
T ss_dssp CHHHHH--HHHHTTSSEEEEECC----CC-CHHHHHHHCCHHHHHHHHC---SSCEEEECCCT
T ss_pred ChhHhe--eeccCCCCEEEEcCC----CC-ccccceeeccHHHHHHhcC---CCCEEEecCcc
Confidence 455667 888999999999952 32 22211 1123356665553 67888886654
No 178
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=33.04 E-value=88 Score=26.94 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
+++.+.|.++.++++++.|+|-- ....+-+-..+..+++++++++ ++||+.++
T Consensus 83 ekL~~~i~~~~~~~~P~~I~v~~----TC~~~iIGdDi~~v~~~~~~~~---~ipVi~v~ 135 (460)
T 2xdq_A 83 EELKRLCLEIKRDRNPSVIVWIG----TCTTEIIKMDLEGLAPKLEAEI---GIPIVVAR 135 (460)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEE----CHHHHHTTCCHHHHHHHHHHHH---SSCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEC----CCHHHHHhhCHHHHHHHHhhcc---CCcEEEEe
Confidence 35667899999999999877761 1111223334688899998775 79999987
No 179
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=32.55 E-value=25 Score=28.65 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.5
Q ss_pred eEEEEecCCCeEEEEEec
Q 030836 64 FSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD 81 (170)
..+|||+|+..+-+|+.+
T Consensus 4 ~~igIDlGT~~s~v~~~~ 21 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRG 21 (344)
T ss_dssp CEEEEEECSSEEEEEETT
T ss_pred ceEEEEcCcCcEEEEECC
Confidence 589999999999988754
No 180
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=32.50 E-value=1e+02 Score=20.05 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
.+..+.+.+..++.|++.+-+. +..+ ..+++.|++......+||+++-.
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~--~~~g------~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLP--DTSG------LALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCS--SSBH------HHHHHHHHHSCCSSCCEEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEeCCCC--CCCH------HHHHHHHHhhhccCCCCEEEEEC
Confidence 3445566778999999996442 3222 46777787651113788887743
No 181
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=32.40 E-value=97 Score=24.00 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++.++..|++-.|-+..|..-+ ++++++..++. ++ .+.+||.++
T Consensus 113 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~----~~-~li~D~a~~ 164 (353)
T 2yrr_A 113 PEAVARALKRRRYRMVALVHGETSTGVLNP----AEAIGALAKEA----GA-LFFLDAVTT 164 (353)
T ss_dssp HHHHHHHHHHSCCSEEEEESEETTTTEECC----HHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHHHhCCCCEEEEEccCCCcceecC----HHHHHHHHHHc----CC-eEEEEcCcc
Confidence 567777777667889999988888887655 23344333332 54 566898774
No 182
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=32.40 E-value=1.1e+02 Score=21.96 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+.+.+..+|.|++.+-. .|..+ -.+++.|++..+ ++||+++-...+...+.+.+
T Consensus 42 ~al~~~~~~~~dlvl~D~~l--p~~~g------~~~~~~l~~~~~--~~~ii~lt~~~~~~~~~~a~ 98 (184)
T 3rqi_A 42 EALKLAGAEKFEFITVXLHL--GNDSG------LSLIAPLCDLQP--DARILVLTGYASIATAVQAV 98 (184)
T ss_dssp HHHHHHTTSCCSEEEECSEE--TTEES------HHHHHHHHHHCT--TCEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHhhCCCCEEEEeccC--CCccH------HHHHHHHHhcCC--CCCEEEEeCCCCHHHHHHHH
Confidence 34455677889999998543 22222 356677776653 78999887666655555443
No 183
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=32.19 E-value=1.4e+02 Score=21.51 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCC-CCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDG-SETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dG-t~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
..+.+.+++...+++.|||-+=.|.-+ +.....+..+.+++.+++..| +.+|+++
T Consensus 62 ~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~~~~p--~~~ii~~ 117 (200)
T 4h08_A 62 LIEELAVVLKNTKFDVIHFNNGLHGFDYTEEEYDKSFPKLIKIIRKYAP--KAKLIWA 117 (200)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCSSCTTSCHHHHHHHHHHHHHHHHHHCT--TCEEEEE
T ss_pred HHHHHHHHHhcCCCCeEEEEeeeCCCCCCHHHHHHHHHHHHHHHhhhCC--CccEEEe
Confidence 456788888899999999964333211 112234556777777777654 5566654
No 184
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=32.15 E-value=1.1e+02 Score=20.13 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+.+.++.++.|++.+ +|.|..+ -.+++.|++.....++||+++-...+...+.+.+
T Consensus 37 ~al~~l~~~~~dlvllD~--~~p~~~g------~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~ 95 (122)
T 3gl9_A 37 IALEKLSEFTPDLIVLXI--MMPVMDG------FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLAL 95 (122)
T ss_dssp HHHHHHTTBCCSEEEECS--CCSSSCH------HHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEec--cCCCCcH------HHHHHHHHhcccccCCCEEEEecCCchHHHHHHH
Confidence 344456778999999985 3434333 3566777654211368999887666655555444
No 185
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=32.13 E-value=62 Score=26.89 Aligned_cols=37 Identities=5% Similarity=0.056 Sum_probs=28.9
Q ss_pred CChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 126 ~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
..+..+.+.++.+.+++. +++++|+++.++.+.|+.+
T Consensus 221 ~ePs~~~l~~l~~~ik~~----~v~~If~e~~~~~k~~~~i 257 (307)
T 3ujp_A 221 QQFTPKQVQTVIEEVKTN----NVPTIFCESTVSDKGQKQV 257 (307)
T ss_dssp SCCCHHHHHHHHHHHHTT----TCSEEEEETTSCSHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHH
Confidence 345677888888888875 8899999988888777654
No 186
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=32.01 E-value=1e+02 Score=19.77 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+++.+..++.+++.+-. .+..+ -.+++.|++..+ .+||+++-...+...+.+.+
T Consensus 35 ~a~~~~~~~~~dlil~D~~l--~~~~g------~~~~~~l~~~~~--~~~ii~~s~~~~~~~~~~~~ 91 (121)
T 2pl1_A 35 EADYYLNEHIPDIAIVDLGL--PDEDG------LSLIRRWRSNDV--SLPILVLTARESWQDKVEVL 91 (121)
T ss_dssp HHHHHHHHSCCSEEEECSCC--SSSCH------HHHHHHHHHTTC--CSCEEEEESCCCHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEecCC--CCCCH------HHHHHHHHhcCC--CCCEEEEecCCCHHHHHHHH
Confidence 34455667889999998532 22222 356667766543 68998886665555544443
No 187
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=31.68 E-value=73 Score=25.73 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEE
Q 030836 103 LEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL 153 (170)
Q Consensus 103 ~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~l 153 (170)
.+.+.+.++|.|.||. +.+-..+.+.++.+++++ . ++|+++
T Consensus 26 ~~~l~~~GaD~IelG~------S~g~t~~~~~~~v~~ir~-~---~~Pivl 66 (234)
T 2f6u_A 26 IKAVADSGTDAVMISG------TQNVTYEKARTLIEKVSQ-Y---GLPIVV 66 (234)
T ss_dssp HHHHHTTTCSEEEECC------CTTCCHHHHHHHHHHHTT-S---CCCEEE
T ss_pred HHHHHHcCCCEEEECC------CCCCCHHHHHHHHHHhcC-C---CCCEEE
Confidence 3455667999999996 333345777888888876 2 789887
No 188
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=31.17 E-value=49 Score=26.04 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecC
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPK 120 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl 120 (170)
......|.+.++++++|.||+|..-
T Consensus 97 g~~~~~i~~~a~~~~~DLiV~G~~g 121 (319)
T 3olq_A 97 NRPYEAIIEEVITDKHDLLIKMAHQ 121 (319)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEEEBC
T ss_pred CChHHHHHHHHHhcCCCEEEEecCc
Confidence 4567789999999999999999753
No 189
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=31.07 E-value=2.2e+02 Score=25.30 Aligned_cols=58 Identities=12% Similarity=-0.036 Sum_probs=36.0
Q ss_pred CCCceEEEEec----CCCeEEEEEecCCe--eEEeEEEEcc---chhHHHHHHHHHHHcCCCEEEEe
Q 030836 60 WRGGFSLGVDL----GLSRTGLALSKGFC--VRPLTVLKLR---GEKLELQLLEIAQREETDEFIIG 117 (170)
Q Consensus 60 ~~~g~iLgID~----G~kRiGVAvsD~~~--a~Pl~~i~~~---~~~~~~~L~~li~e~~v~~IVVG 117 (170)
.....++|+|+ |...+++++.+... -.-+..+..+ .....+.|.++.++|++..|++=
T Consensus 417 ~~~~~~~GvD~S~G~~~D~tai~v~~~~g~~~~~v~~~~~~~~~~~~~~~~I~~l~~~y~~~~I~iD 483 (592)
T 3cpe_A 417 PDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIE 483 (592)
T ss_dssp TTCCEEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEESSSCTTTHHHHHHHHHHHTTSCCEEEE
T ss_pred CCceEEEEEecCCCCCCCceEEEEEEcCCCceEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34567999999 45667777764211 1112222211 22456789999999999988774
No 190
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=31.05 E-value=1.4e+02 Score=25.68 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=16.5
Q ss_pred EEEEecCCCeEEEEEecC
Q 030836 65 SLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 65 iLgID~G~kRiGVAvsD~ 82 (170)
+||||+|+..+=+++.|.
T Consensus 2 ~lgiDiGtt~~k~~l~d~ 19 (484)
T 2itm_A 2 YIGIDLGTSGVKVILLNE 19 (484)
T ss_dssp EEEEEECSSEEEEEEECT
T ss_pred EEEEEecCcccEEEEECC
Confidence 799999999999999983
No 191
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=30.66 E-value=1.3e+02 Score=26.39 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=17.9
Q ss_pred ceEEEEecCCCeEEEEEecC
Q 030836 63 GFSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~ 82 (170)
..+||||+|+..+=+++.|.
T Consensus 3 ~~~lgIDiGtts~k~~l~d~ 22 (510)
T 2p3r_A 3 KYIVALDQGTTSSRAVVMDH 22 (510)
T ss_dssp CEEEEEEECSSEEEEEEECT
T ss_pred cEEEEEEcCCcceEEEEECC
Confidence 47999999999999999984
No 192
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=30.60 E-value=1.2e+02 Score=26.30 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCCC--ChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDGSE--TPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dGt~--s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
+...+.+++++++++.|||=.=-.+.... ....+.+..+...|+....+++++|+++-
T Consensus 342 i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~ 401 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVIC 401 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEE
Confidence 34567778888999999997432232211 13345566666666543222489999874
No 193
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=30.59 E-value=1.4e+02 Score=22.61 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=25.4
Q ss_pred HHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 102 LLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 102 L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
..+.+...++|+||+. | ... .......+.+.+. ++||+++|..
T Consensus 53 ~~~~l~~~~vdgiIi~-~-----~~~---~~~~~~~~~~~~~----~iPvV~~~~~ 95 (291)
T 3l49_A 53 QIQTLIAQKPDAIIEQ-L-----GNL---DVLNPWLQKINDA----GIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHCCSEEEEE-S-----SCH---HHHHHHHHHHHHT----TCCEEEESCC
T ss_pred HHHHHHHcCCCEEEEe-C-----CCh---hhhHHHHHHHHHC----CCcEEEecCC
Confidence 3333445699999987 1 111 1223445556553 7899988854
No 194
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=30.28 E-value=1.4e+02 Score=24.02 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=34.8
Q ss_pred HHHHHHHHHH---cCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQR---EETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e---~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+++++ .++..|++-.|-++.|..-+ +++.++..++. ++ ++.+||-++
T Consensus 164 ~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~----~~-~li~Dea~~ 218 (401)
T 2bwn_A 164 VAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEF----GA-LTYIDEVHA 218 (401)
T ss_dssp HHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHHHhhccCCceEEEEecCcCCCCCcCC----HHHHHHHHHHc----CC-EEEEecccc
Confidence 4567777764 35778899989999898776 23444333333 54 567899877
No 195
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=30.28 E-value=80 Score=25.55 Aligned_cols=41 Identities=27% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEE
Q 030836 103 LEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL 153 (170)
Q Consensus 103 ~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~l 153 (170)
.+.+.+.++|.|.+|. +.+-..+.+-+..+++++ . ++||++
T Consensus 26 ~~~l~~~GaD~ielG~------S~Gvt~~~~~~~v~~ir~-~---~~Pivl 66 (240)
T 1viz_A 26 LEILCESGTDAVIIGG------SDGVTEDNVLRMMSKVRR-F---LVPCVL 66 (240)
T ss_dssp HHHHHTSCCSEEEECC----------CHHHHHHHHHHHTT-S---SSCEEE
T ss_pred HHHHHHcCCCEEEECC------CCCCCHHHHHHHHHHhhC-c---CCCEEE
Confidence 3455667999999995 444456667888888876 3 789985
No 196
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=30.26 E-value=1.4e+02 Score=22.10 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=38.3
Q ss_pred EEeEEEEccchhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEE
Q 030836 86 RPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL 153 (170)
Q Consensus 86 ~Pl~~i~~~~~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~l 153 (170)
.++.++........+++.+.+.+++++.|.+- .+.+.....++++++.|++.-+ .+++|+.
T Consensus 45 ~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS------~~~~~~~~~~~~~i~~L~~~g~-~~i~v~v 105 (161)
T 2yxb_A 45 AGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVS------ILNGAHLHLMKRLMAKLRELGA-DDIPVVL 105 (161)
T ss_dssp TTCEEECCCSBCCHHHHHHHHHHTTCSEEEEE------ESSSCHHHHHHHHHHHHHHTTC-TTSCEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHhcCCCEEEEE------eechhhHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 45666643223345778888888899977765 3344556777888888877521 1455543
No 197
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=30.23 E-value=1.7e+02 Score=25.34 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=17.8
Q ss_pred ceEEEEecCCCeEEEEEecC
Q 030836 63 GFSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~ 82 (170)
..+||||+|+..+=+++.|.
T Consensus 3 ~~~lgiDiGtt~~k~~l~d~ 22 (497)
T 2zf5_O 3 KFVLSLDEGTTSARAIIFDR 22 (497)
T ss_dssp CEEEEEEECSSEEEEEEECT
T ss_pred cEEEEEecCCchhEEEEECC
Confidence 36999999999999999984
No 198
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=29.85 E-value=1.5e+02 Score=23.84 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+.+.++..|++..|- +|+..+ +++.++..++. ++ .+.+||-.+
T Consensus 153 ~~~l~~~i~~~~~~~v~~~~~~--~G~~~~----l~~i~~l~~~~----~~-~li~Dea~~ 202 (417)
T 3n0l_A 153 YEKVREIAKKEKPKLIVCGASA--YARVID----FAKFREIADEI----GA-YLFADIAHI 202 (417)
T ss_dssp HHHHHHHHHHHCCSEEEECCSS--CCSCCC----HHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHHHhcCCeEEEECCcc--cCccCC----HHHHHHHHHHc----CC-EEEEECccc
Confidence 5788888887789999987766 476655 33344333333 55 456898754
No 199
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=29.66 E-value=1.3e+02 Score=20.19 Aligned_cols=59 Identities=10% Similarity=0.195 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+.+.+..++.|++.+- |.|..+ -.+++.|++......+||+++-...+...+.+.+
T Consensus 39 ~al~~~~~~~~dlvl~D~~--lp~~~g------~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~ 97 (136)
T 3t6k_A 39 EALQQIYKNLPDALICDVL--LPGIDG------YTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGF 97 (136)
T ss_dssp HHHHHHHHSCCSEEEEESC--CSSSCH------HHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCC--CCCCCH------HHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHH
Confidence 3445567789999999853 333333 3566677653111368999887666555544433
No 200
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=29.64 E-value=1.1e+02 Score=23.36 Aligned_cols=44 Identities=9% Similarity=0.094 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
..+.+.+...++|+||+- |... .. ...+.+.+. ++||+++|...
T Consensus 59 ~~~~~~~~~~~vdgiIi~-~~~~---~~-------~~~~~l~~~----~iPvV~~~~~~ 102 (292)
T 3k4h_A 59 NGVVKMVQGRQIGGIILL-YSRE---ND-------RIIQYLHEQ----NFPFVLIGKPY 102 (292)
T ss_dssp HHHHHHHHTTCCCEEEES-CCBT---TC-------HHHHHHHHT----TCCEEEESCCS
T ss_pred HHHHHHHHcCCCCEEEEe-CCCC---Ch-------HHHHHHHHC----CCCEEEECCCC
Confidence 456666777899999984 3221 11 234455543 78999988654
No 201
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=29.49 E-value=80 Score=27.20 Aligned_cols=55 Identities=7% Similarity=-0.006 Sum_probs=35.6
Q ss_pred HHHHHHHHHH-cCCCEEEEee----cCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccH
Q 030836 99 ELQLLEIAQR-EETDEFIIGL----PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160 (170)
Q Consensus 99 ~~~L~~li~e-~~v~~IVVGl----Pl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT 160 (170)
.+.|.+.+.+ .++..|++.. |-++.|+.. .++++++..++. + +++ ++++||.+.+
T Consensus 164 ~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~----dl~~i~~la~~~-~-~g~-~livD~a~~~ 223 (427)
T 3i16_A 164 LEEIEKVLKEDESITLVHIQRSTGYGWRRALLIE----DIKSIVDCVKNI-R-KDI-ICFVDNCYGE 223 (427)
T ss_dssp HHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHH----HHHHHHHHHHHH-C-TTS-EEEEECTTTT
T ss_pred HHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHH----HHHHHHHHHHHh-C-CCC-EEEEECCCcc
Confidence 5678887775 5788999988 888888753 345555444441 0 255 4559987653
No 202
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.42 E-value=62 Score=23.64 Aligned_cols=51 Identities=10% Similarity=0.188 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
.++-+.|.++++.|+...+||-. ...+.++++..|.+.|.. .+-|+.+|..
T Consensus 36 qelkdsieelvkkynativvvvv------ddkewaekairfvkslga-----qvliiiydqd 86 (134)
T 2l69_A 36 QELKDSIEELVKKYNATIVVVVV------DDKEWAEKAIRFVKSLGA-----QVLIIIYDQD 86 (134)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEC------SSHHHHHHHHHHHHHHCC-----CCEEEEECSC
T ss_pred HHHHHHHHHHHHHhCCeEEEEEE------ccHHHHHHHHHHHHhcCC-----eEEEEEEeCc
Confidence 45567899999999998777763 345788888889888764 3456666643
No 203
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=28.95 E-value=1.5e+02 Score=22.16 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.+.+...++|+||+- |..... . ...+.+.+. ++||+++|....
T Consensus 49 ~~~~~l~~~~vdgiIi~-~~~~~~--~-------~~~~~~~~~----~iPvV~~~~~~~ 93 (272)
T 3o74_A 49 QLQQLFRARRCDALFVA-SCLPPE--D-------DSYRELQDK----GLPVIAIDRRLD 93 (272)
T ss_dssp HHHHHHHHTTCSEEEEC-CCCCSS--C-------CHHHHHHHT----TCCEEEESSCCC
T ss_pred HHHHHHHHcCCCEEEEe-cCcccc--H-------HHHHHHHHc----CCCEEEEccCCC
Confidence 44445556799999985 332111 1 233445443 789998886543
No 204
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=28.65 E-value=1.2e+02 Score=23.74 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
+.|.+.+.+ +..|++-.|-+..|..-+.. .+++.++..++. ++ .+.+||-++
T Consensus 136 ~~l~~~l~~--~~~v~i~~p~nptG~~~~~~-~l~~i~~~~~~~----~~-~li~De~~~ 187 (361)
T 3ftb_A 136 EDIISKIDD--VDSVIIGNPNNPNGGLINKE-KFIHVLKLAEEK----KK-TIIIDEAFI 187 (361)
T ss_dssp HHHHHHTTT--CSEEEEETTBTTTTBCCCHH-HHHHHHHHHHHH----TC-EEEEECSSG
T ss_pred HHHHHhccC--CCEEEEeCCCCCCCCCCCHH-HHHHHHHHhhhc----CC-EEEEECcch
Confidence 677777765 88999999988888765433 356666555443 44 566898875
No 205
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=28.64 E-value=1.3e+02 Score=26.04 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCC--EEEEeecCCCCCCC--ChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 98 LELQLLEIAQREETD--EFIIGLPKSWDGSE--TPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 98 ~~~~L~~li~e~~v~--~IVVGlPl~~dGt~--s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
....+++++++++++ .|||=+=-.+.+.. ....+.+..+...|+....+.++||++.-+
T Consensus 296 i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 358 (444)
T 3bgw_A 296 IWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQ 358 (444)
T ss_dssp HHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 345677888889999 99987543343321 233445666666665432224899998764
No 206
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=28.61 E-value=1.2e+02 Score=19.69 Aligned_cols=55 Identities=9% Similarity=0.188 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
+..+.+.++.++.|++.+- |.|..+ ..+++.|++. .++||+++-...+...+.+.
T Consensus 37 ~al~~~~~~~~dlii~D~~--~p~~~g------~~~~~~lr~~---~~~~ii~~t~~~~~~~~~~~ 91 (120)
T 3f6p_A 37 EAVEMVEELQPDLILLDIM--LPNKDG------VEVCREVRKK---YDMPIIMLTAKDSEIDKVIG 91 (120)
T ss_dssp HHHHHHHTTCCSEEEEETT--STTTHH------HHHHHHHHTT---CCSCEEEEEESSCHHHHHHH
T ss_pred HHHHHHhhCCCCEEEEeCC--CCCCCH------HHHHHHHHhc---CCCCEEEEECCCChHHHHHH
Confidence 4445667789999999853 333222 3566677654 36898877655554444433
No 207
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=28.59 E-value=1.6e+02 Score=23.55 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+.+.++..|++..|.+ |+..+. +.+.+++ ++. ++ .+.+||-++
T Consensus 161 ~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l-~~i~~l~---~~~----~~-~li~De~~~ 210 (425)
T 3ecd_A 161 YDQVEALAQQHKPSLIIAGFSAY--PRKLDF-ARFRAIA---DSV----GA-KLMVDMAHI 210 (425)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCC--CSCCCH-HHHHHHH---HHH----TC-EEEEECGGG
T ss_pred HHHHHHHHhhcCCcEEEEccccC--CCcCCH-HHHHHHH---HHc----CC-EEEEECcCh
Confidence 57888888877899999987665 665543 2333333 332 55 456899744
No 208
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=28.51 E-value=1.3e+02 Score=19.80 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 102 LLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 102 L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
..+.+.+..++.|++.+-. .+..+ ..+++.|++..+ .+||+++-
T Consensus 39 a~~~~~~~~~dlvl~D~~l--~~~~g------~~~~~~l~~~~~--~~~ii~~s 82 (136)
T 1mvo_A 39 ALKKAETEKPDLIVLDVML--PKLDG------IEVCKQLRQQKL--MFPILMLT 82 (136)
T ss_dssp HHHHHHHHCCSEEEEESSC--SSSCH------HHHHHHHHHTTC--CCCEEEEE
T ss_pred HHHHHhhcCCCEEEEecCC--CCCCH------HHHHHHHHcCCC--CCCEEEEE
Confidence 3345566789999998643 23222 356677776543 68888773
No 209
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=28.42 E-value=83 Score=23.96 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=22.8
Q ss_pred HHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 104 EIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 104 ~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
+.+...++|+||+- |...+ .. ....+.+.+. ++||+++|..
T Consensus 51 ~~l~~~~vdgiIi~-~~~~~----~~----~~~~~~~~~~----~iPvV~i~~~ 91 (271)
T 2dri_A 51 QDLTVRGTKILLIN-PTDSD----AV----GNAVKMANQA----NIPVITLDRQ 91 (271)
T ss_dssp HHHTTTTEEEEEEC-CSSTT----TT----HHHHHHHHHT----TCCEEEESSC
T ss_pred HHHHHcCCCEEEEe-CCChH----HH----HHHHHHHHHC----CCcEEEecCC
Confidence 33446789999984 43211 11 1223444443 7899988853
No 210
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=28.38 E-value=1.9e+02 Score=22.33 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
.+.+.+...++|+||+- |...+. .....+.+.+. ++||+++|...
T Consensus 49 ~~i~~l~~~~vdgiIi~-~~~~~~--------~~~~~~~~~~~----~iPvV~~~~~~ 93 (313)
T 3m9w_A 49 SQIENMINRGVDVLVII-PYNGQV--------LSNVVKEAKQE----GIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHHTTCSEEEEE-CSSTTS--------CHHHHHHHHTT----TCEEEEESSCC
T ss_pred HHHHHHHHcCCCEEEEe-CCChhh--------hHHHHHHHHHC----CCeEEEECCcC
Confidence 33344445799999987 222111 12344555443 78999988643
No 211
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=28.36 E-value=70 Score=25.46 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++ +..|++-.|-+..|..-+.. .+++.++..++. ++ .+.+||-++
T Consensus 155 ~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~-~l~~i~~~~~~~----~~-~li~De~~~ 207 (391)
T 4dq6_A 155 YEDIENKIKD--VKLFILCNPHNPVGRVWTKD-ELKKLGDICLKH----NV-KIISDEIHS 207 (391)
T ss_dssp HHHHHHHCTT--EEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHHhhc--CCEEEEECCCCCCCcCcCHH-HHHHHHHHHHHc----CC-EEEeecccc
Confidence 5677777765 77888998988778654323 355666555443 54 556888765
No 212
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=28.19 E-value=1.5e+02 Score=20.37 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+.+.+..++.||+.+-. .|..+ ..+++.|++......+||+++-...+...+.+.+
T Consensus 41 ~~al~~l~~~~~dlii~D~~l--~~~~g------~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~ 100 (154)
T 3gt7_A 41 REAVRFLSLTRPDLIISDVLM--PEMDG------YALCRWLKGQPDLRTIPVILLTILSDPRDVVRSL 100 (154)
T ss_dssp HHHHHHHTTCCCSEEEEESCC--SSSCH------HHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCC--CCCCH------HHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHH
Confidence 344556677899999999643 23222 4667777664211368988876655555544443
No 213
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=28.12 E-value=2.4e+02 Score=22.82 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhH----HHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQS----NKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~----~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
.+++.+++.+.++++||+. |+.++.. +.-+++.+...+... -.+||+.-==..||.+|-+..+
T Consensus 24 l~~lv~~li~~Gv~gl~~~------GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg~~~t~~ai~la~ 90 (292)
T 2ojp_A 24 LKKLIDYHVASGTSAIVSV------GTTGESATLNHDEHADVVMMTLDLAD-GRIPVIAGTGANATAEAISLTQ 90 (292)
T ss_dssp HHHHHHHHHHHTCCEEEES------STTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEC------ccccchhhCCHHHHHHHHHHHHHHhC-CCCcEEEecCCccHHHHHHHHH
Confidence 4566666667799999987 6555521 111233333333332 1478886656678888876654
No 214
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=27.63 E-value=1.3e+02 Score=21.39 Aligned_cols=44 Identities=9% Similarity=0.063 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHh
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVR 143 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~ 143 (170)
.++.+.+++.++..|+++-|.............+..+.+.+++.
T Consensus 120 ~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~ 163 (216)
T 3rjt_A 120 RHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDV 163 (216)
T ss_dssp HHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHH
Confidence 34445555557777888733333333333455556666555543
No 215
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=27.38 E-value=1.1e+02 Score=23.23 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 102 LLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 102 L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
+.+.+...++|+||+- |. ..+. ...+.+.+.+. ++||+++|...
T Consensus 61 ~i~~l~~~~vdgiii~-~~-----~~~~---~~~~~~~~~~~----~iPvV~~~~~~ 104 (304)
T 3gbv_A 61 TSQAVIEEQPDGVMFA-PT-----VPQY---TKGFTDALNEL----GIPYIYIDSQI 104 (304)
T ss_dssp HHHHHHTTCCSEEEEC-CS-----SGGG---THHHHHHHHHH----TCCEEEESSCC
T ss_pred HHHHHHhcCCCEEEEC-CC-----ChHH---HHHHHHHHHHC----CCeEEEEeCCC
Confidence 3344456799999987 22 1111 13445566554 78999998543
No 216
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=27.25 E-value=2.2e+02 Score=23.23 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhH----HHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQS----NKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~----~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
.+++.+++.+.++++||+. |+.++.. +.-+++++...+... -.+||+.===..+|.+|-+..+
T Consensus 35 l~~lv~~li~~Gv~gl~v~------GtTGE~~~Ls~eEr~~v~~~~~~~~~-grvpViaGvg~~~t~~ai~la~ 101 (301)
T 1xky_A 35 TTKLVNYLIDNGTTAIVVG------GTTGESPTLTSEEKVALYRHVVSVVD-KRVPVIAGTGSNNTHASIDLTK 101 (301)
T ss_dssp HHHHHHHHHHTTCCEEEES------STTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEC------ccccChhhCCHHHHHHHHHHHHHHhC-CCceEEeCCCCCCHHHHHHHHH
Confidence 4566666667899999987 6655521 111233333333332 1478876656678888866543
No 217
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=27.22 E-value=2.2e+02 Score=22.98 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
++++.+.+.++++|.||++-=+-..+..+ .+....|.+.|.+.. ..++||+++
T Consensus 29 ~~~~~~~~~~~~~D~vl~~GDl~d~~~~~--~~~~~~~~~~l~~l~-~~~~~v~~v 81 (333)
T 1ii7_A 29 FKNALEIAVQENVDFILIAGDLFHSSRPS--PGTLKKAIALLQIPK-EHSIPVFAI 81 (333)
T ss_dssp HHHHHHHHHHTTCSEEEEESCSBSSSSCC--HHHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCcCCCCCCC--HHHHHHHHHHHHHHH-HCCCcEEEe
Confidence 45677777889999988873221112222 233444444444321 126788887
No 218
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=27.19 E-value=88 Score=24.67 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCEEEEeecCC---CCCCCCh-----------hHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 100 LQLLEIAQREETDEFIIGLPKS---WDGSETP-----------QSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~---~dGt~s~-----------~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
.++.+.+.+.++|.|-+|.|.. +||..-+ ........++.+++. .++||++.+
T Consensus 35 ~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~---~~~Pv~~m~ 101 (262)
T 1rd5_A 35 AEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE---LSCPVVLLS 101 (262)
T ss_dssp HHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG---CSSCEEEEC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 3445555677999999999986 3442211 123445667777665 378988754
No 219
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=27.17 E-value=46 Score=26.85 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.++ .++..|++--|-++.|..-+..+.+++.++..++ +++ ++.+||-++
T Consensus 172 ~~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~----~~~-~li~De~~~ 226 (392)
T 3ruy_A 172 LEALKAAIT-PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKK----ENV-LFVADEIQT 226 (392)
T ss_dssp HHHHHHHCC-TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHT----TTC-EEEEECTTT
T ss_pred HHHHHHHhc-cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHH----cCC-EEEEeechh
Confidence 456666665 5778888877888888766544444555544433 254 456899875
No 220
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=27.11 E-value=2.1e+02 Score=21.95 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
..+..+++.+.++..||+.......+ .....+.+.+..+.+.+...++++.+.+-....|..++.+++.
T Consensus 104 ~~~~i~~a~~lG~~~v~~~~G~~~~~-~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~l~~ 172 (290)
T 3tva_A 104 MKEISDFASWVGCPAIGLHIGFVPES-SSPDYSELVRVTQDLLTHAANHGQAVHLETGQESADHLLEFIE 172 (290)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCCCCT-TSHHHHHHHHHHHHHHHHHHTTTCEEEEECCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCccc-chHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHH
Confidence 35566677788999999843222222 2222223333333333333236888888777667777776654
No 221
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=26.98 E-value=35 Score=30.18 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc-Cccc
Q 030836 97 KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD-EHRT 159 (170)
Q Consensus 97 ~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD-ER~T 159 (170)
++.+.|.+++++|+++.|+|-- .....-+-..+..++++++++. ++||+.++ +-|.
T Consensus 109 kL~~~I~~~~~~~~P~~I~V~t----TC~~e~IGdDl~~v~~~~~~~~---~~pVi~v~tpgf~ 165 (483)
T 3pdi_A 109 RLFHAIRQAVESYSPPAVFVYN----TCVPALIGDDVDAVCKAAAERF---GTPVIPVDSAGFY 165 (483)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEC----CHHHHHTTCCHHHHHHHHHHHH---CSCEEEECCCGGG
T ss_pred HHHHHHHHHHHhcCCCEEEEEC----CchHHHhcCCHHHHHHHHHHHh---CCCEEEEeCCCcc
Confidence 5667899999999999988871 1111223345678888888775 79999998 5443
No 222
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=26.95 E-value=1.3e+02 Score=24.33 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=30.7
Q ss_pred HHHHHHHHHH----cCCCEEEEeecCCC-CCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQR----EETDEFIIGLPKSW-DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e----~~v~~IVVGlPl~~-dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++ .++..| +-.|... .|...+..+..++.++..++. ++ ++.+||-++
T Consensus 184 ~~~l~~~l~~~~~~~~~~~v-~~~p~~~ntG~~~~~~~~l~~l~~l~~~~----~~-~li~De~~~ 243 (426)
T 1sff_A 184 IASIHRIFKNDAAPEDIAAI-VIEPVQGEGGFYASSPAFMQRLRALCDEH----GI-MLIADEVQS 243 (426)
T ss_dssp HHHHHHHHHHTCCGGGEEEE-EECSBCTTTTSCBCCHHHHHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHHHhccCCCceEEE-EEecccCCCCcccCCHHHHHHHHHHHHHc----CC-EEEEechhh
Confidence 5678777765 344444 4455422 464444444455555544443 54 567899887
No 223
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=26.94 E-value=1.1e+02 Score=24.62 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeec-CCCCCCCChhH-HHHHHHHHHHHHhhccCCccEEEE
Q 030836 98 LELQLLEIAQREETDEFIIGLP-KSWDGSETPQS-NKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlP-l~~dGt~s~~~-~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
.++++.+.++++++|.||+.-= +-..+..+..+ +.+.+|.++|.+. +||+++
T Consensus 49 ~l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~-----~pv~~i 102 (336)
T 2q8u_A 49 ALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT-----APVVVL 102 (336)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH-----SCEEEC
T ss_pred HHHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc-----CCEEEE
Confidence 4577888888899998887732 22123333221 2334444444431 577765
No 224
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=26.89 E-value=51 Score=29.30 Aligned_cols=57 Identities=11% Similarity=0.002 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHcC-CCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc-CcccH
Q 030836 97 KLELQLLEIAQREE-TDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD-EHRTS 160 (170)
Q Consensus 97 ~~~~~L~~li~e~~-v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD-ER~TT 160 (170)
++.+.|.++++.|+ ++.|+|-- .....-+-..+..+++++++++ ++||+.++ +.|..
T Consensus 130 kL~~~I~~~~~~~~~P~~I~V~t----TC~~e~IGdDl~~v~~~~~~~~---~~pVi~v~tpgf~g 188 (492)
T 3u7q_A 130 KLAKLIDEVETLFPLNKGISVQS----ECPIGLIGDDIESVSKVKGAEL---SKTIVPVRCEGFRG 188 (492)
T ss_dssp HHHHHHHHHHHHCTTCCCEEEEE----CTHHHHTTCCHHHHHHHHHHHH---TCCEEEECCCTTSS
T ss_pred HHHHHHHHHHHhCCCCCEEEEEC----CcHHHHHhcCHHHHHHHHHHhh---CCcEEEecCCCCCC
Confidence 44577899999999 99888771 1112223345678899998875 78999998 66653
No 225
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=26.80 E-value=1.1e+02 Score=21.96 Aligned_cols=52 Identities=6% Similarity=0.065 Sum_probs=32.1
Q ss_pred EEeEEEEccchhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHh
Q 030836 86 RPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVR 143 (170)
Q Consensus 86 ~Pl~~i~~~~~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~ 143 (170)
.+++++........+++.+.+.+++++.|.+- .+.+.....++++++.|++.
T Consensus 30 ~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS------~~~~~~~~~~~~~i~~l~~~ 81 (137)
T 1ccw_A 30 AGFNVVNIGVLSPQELFIKAAIETKADAILVS------SLYGQGEIDCKGLRQKCDEA 81 (137)
T ss_dssp TTCEEEEEEEEECHHHHHHHHHHHTCSEEEEE------ECSSTHHHHHTTHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHhcCCCEEEEE------ecCcCcHHHHHHHHHHHHhc
Confidence 35555532222345677777777888877665 34445556677777777765
No 226
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=26.77 E-value=82 Score=21.36 Aligned_cols=45 Identities=7% Similarity=0.127 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
+..+++.+..++.|++.+-. .+..+ ..+++.|++..+ .+||+++-
T Consensus 40 ~al~~~~~~~~dlvllD~~l--p~~~g------~~l~~~l~~~~~--~~~ii~ls 84 (141)
T 3cu5_A 40 NAIQIALKHPPNVLLTDVRM--PRMDG------IELVDNILKLYP--DCSVIFMS 84 (141)
T ss_dssp HHHHHHTTSCCSEEEEESCC--SSSCH------HHHHHHHHHHCT--TCEEEEEC
T ss_pred HHHHHHhcCCCCEEEEeCCC--CCCCH------HHHHHHHHhhCC--CCcEEEEe
Confidence 33445567789999998643 23222 356677766543 68888873
No 227
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=26.75 E-value=1.5e+02 Score=24.07 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
.-++.+.+++.++|++.+--|.--.. + .+.+.++-+.+++.. ++||+++|=
T Consensus 86 ai~la~~a~~~Gadavlv~~P~y~~~--~--~~~l~~~f~~ia~a~---~lPiilYn~ 136 (292)
T 3daq_A 86 SIQASIQAKALGADAIMLITPYYNKT--N--QRGLVKHFEAIADAV---KLPVVLYNV 136 (292)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCSSCC--C--HHHHHHHHHHHHHHH---CSCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCC--C--HHHHHHHHHHHHHhC---CCCEEEEec
Confidence 34667777888999999998865322 2 244555666777765 799999873
No 228
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=26.72 E-value=1.4e+02 Score=19.66 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=33.6
Q ss_pred HHHHHcC-CCEEEEeecCCCCCCCChhHHHHHHHHHHHHHh-hccCCccEEEEcCcccHHHHHHHH
Q 030836 104 EIAQREE-TDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVR-AAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 104 ~li~e~~-v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~-~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
..+.+.. ++.||+.+-. .+..+ ..+++.|++. .+ .+||+++-...+...+.+.+
T Consensus 45 ~~~~~~~~~dlvi~D~~l--~~~~g------~~~~~~l~~~~~~--~~~ii~~s~~~~~~~~~~~~ 100 (136)
T 3hdv_A 45 LYLHYQKRIGLMITDLRM--QPESG------LDLIRTIRASERA--ALSIIVVSGDTDVEEAVDVM 100 (136)
T ss_dssp HHHHHCTTEEEEEECSCC--SSSCH------HHHHHHHHTSTTT--TCEEEEEESSCCHHHHHHHH
T ss_pred HHHHhCCCCcEEEEeccC--CCCCH------HHHHHHHHhcCCC--CCCEEEEeCCCChHHHHHHH
Confidence 3344455 9999998643 23222 4677777765 33 78999887666665555444
No 229
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=26.70 E-value=2.2e+02 Score=24.88 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=33.1
Q ss_pred ceEEEEecCCCeEEEEEecCC---ee---EEeEEEEcc------chhHHHHHHHHHHH---cCCCEEEEee
Q 030836 63 GFSLGVDLGLSRTGLALSKGF---CV---RPLTVLKLR------GEKLELQLLEIAQR---EETDEFIIGL 118 (170)
Q Consensus 63 g~iLgID~G~kRiGVAvsD~~---~a---~Pl~~i~~~------~~~~~~~L~~li~e---~~v~~IVVGl 118 (170)
..+||||+|+..+=+++.|.. .+ .|+...+.. ....++.+.+.+++ .+|..|-|+-
T Consensus 6 ~~~lgIDiGTts~Ka~l~d~~G~i~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~I~aIgis~ 76 (482)
T 3h6e_A 6 GATIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYADHPVTTIVPVG 76 (482)
T ss_dssp --CEEEEECSSEEEEEEECTTSCEEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred ceEEEEEcCCCCeEEEEEECCCcEEEEEEecCCcccCCCceeECHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 469999999999999999842 22 344433321 12234455554443 5787777654
No 230
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=26.66 E-value=1.2e+02 Score=23.47 Aligned_cols=44 Identities=9% Similarity=0.109 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
.++.+.+...++|+||+- |... +. ...+.+.+. ++||+++|...
T Consensus 58 ~~~~~~l~~~~vdGiI~~-~~~~----~~------~~~~~l~~~----~iPvV~i~~~~ 101 (295)
T 3hcw_A 58 DEVYKMIKQRMVDAFILL-YSKE----ND------PIKQMLIDE----SMPFIVIGKPT 101 (295)
T ss_dssp HHHHHHHHTTCCSEEEES-CCCT----TC------HHHHHHHHT----TCCEEEESCCC
T ss_pred HHHHHHHHhCCcCEEEEc-Cccc----Ch------HHHHHHHhC----CCCEEEECCCC
Confidence 456666777899999985 2211 11 233445443 78999998543
No 231
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=26.60 E-value=1.2e+02 Score=24.05 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHHHHHHHHH-cCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQR-EETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e-~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
...+..++.+ .++|+||+- | . ... .....+++.+ .++||+++|-...
T Consensus 50 ~~~i~~~i~~~~~vDgiIi~-~-~----~~~----~~~~~~~~~~----~giPvV~~~~~~~ 97 (350)
T 3h75_A 50 LQQARELFQGRDKPDYLMLV-N-E----QYV----APQILRLSQG----SGIKLFIVNSPLT 97 (350)
T ss_dssp HHHHHHHHHSSSCCSEEEEE-C-C----SSH----HHHHHHHHTT----SCCEEEEEESCCC
T ss_pred HHHHHHHHhcCCCCCEEEEe-C-c----hhh----HHHHHHHHHh----CCCcEEEEcCCCC
Confidence 3567777776 899999995 3 1 111 2344455544 3899999986543
No 232
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=26.43 E-value=1.4e+02 Score=24.57 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
-++.+.+++.++|.++|--|... .. ..+.+.++-+.+++.. ++||+++|
T Consensus 96 i~la~~A~~~Gadavlv~~P~y~--~~--s~~~l~~~f~~va~a~---~lPiilYn 144 (316)
T 3e96_A 96 IELGNAAKAAGADAVMIHMPIHP--YV--TAGGVYAYFRDIIEAL---DFPSLVYF 144 (316)
T ss_dssp HHHHHHHHHHTCSEEEECCCCCS--CC--CHHHHHHHHHHHHHHH---TSCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCCCC--CC--CHHHHHHHHHHHHHhC---CCCEEEEe
Confidence 45677778889999999988752 22 2344556666677665 69999988
No 233
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=26.41 E-value=1.9e+02 Score=24.54 Aligned_cols=56 Identities=9% Similarity=-0.069 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e 169 (170)
..++.+.+++.+++.|-|-.+. .++ .|++.+++.+ ++||+..-- +|-..|++.+.+
T Consensus 252 ~~~la~~l~~~Gvd~i~v~~~~-----~~~------~~~~~ik~~~---~iPvi~~Gg-it~e~a~~~l~~ 307 (361)
T 3gka_A 252 FGHVARELGRRRIAFLFARESF-----GGD------AIGQQLKAAF---GGPFIVNEN-FTLDSAQAALDA 307 (361)
T ss_dssp HHHHHHHHHHTTCSEEEEECCC-----STT------CCHHHHHHHH---CSCEEEESS-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEECCCC-----CCH------HHHHHHHHHc---CCCEEEeCC-CCHHHHHHHHHc
Confidence 4567777888899998876432 221 4667777765 689887654 588889888754
No 234
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=26.40 E-value=2.2e+02 Score=24.35 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCCCChh----HHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQ----SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~----~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
..+++.++..+.++++||+. |+.++. .++=+++++...+... -.+||+.-==..+|.+|-+..+
T Consensus 81 al~~lv~~li~~Gv~Gl~v~------GTTGE~~~Ls~eEr~~vi~~~ve~~~-grvpViaGvg~~st~eai~la~ 148 (360)
T 4dpp_A 81 AYDDLVNIQIQNGAEGVIVG------GTTGEGQLMSWDEHIMLIGHTVNCFG-GSIKVIGNTGSNSTREAIHATE 148 (360)
T ss_dssp HHHHHHHHHHHTTCCEEEES------STTTTGGGSCHHHHHHHHHHHHHHHT-TTSEEEEECCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEec------ccccChhhCCHHHHHHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHH
Confidence 34566666667899999997 655541 1111233333333332 1478886555668888876543
No 235
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=26.32 E-value=1.7e+02 Score=24.38 Aligned_cols=51 Identities=18% Similarity=-0.002 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccH
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT 160 (170)
.+.|.+.+.+.++..|+++.|.+..+. + -+.+.+++ ++. ++ ++.+||-+++
T Consensus 174 ~~~l~~~i~~~~~~~i~~~~~~~~~~~--~-l~~i~~l~---~~~----g~-lli~Dea~~~ 224 (447)
T 3h7f_A 174 MDAVRATALEFRPKVIIAGWSAYPRVL--D-FAAFRSIA---DEV----GA-KLLVDMAHFA 224 (447)
T ss_dssp HHHHHHHHHHHCCSEEEEECSSCCSCC--C-HHHHHHHH---HHH----TC-EEEEECTTTH
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCcc--C-HHHHHHHH---HHc----CC-EEEEECCchh
Confidence 578888887788999999888764333 2 23333333 332 44 5678997543
No 236
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=26.25 E-value=1.4e+02 Score=19.69 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHH--hhccCCccEEEEcCcccHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAV--RAAERGWRVYLLDEHRTSAE 162 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~--~~~~~~lpV~lvDER~TT~e 162 (170)
.+..+.+.+..++.||+.+-. .+..+ ..+++.|++ .. .++||+++-...+...
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l--~~~~g------~~~~~~l~~~~~~--~~~~ii~~s~~~~~~~ 94 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNL--PDQDG------VSLIRALRRDSRT--RDLAIVVVSANAREGE 94 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCC--SSSCH------HHHHHHHHTSGGG--TTCEEEEECTTHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCC--CCCCH------HHHHHHHHhCccc--CCCCEEEEecCCChHH
Confidence 344556677899999998643 23222 467777776 33 3789998866554433
No 237
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=26.22 E-value=2.6e+02 Score=22.71 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCCCChh----HHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQ----SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~----~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
..+++.+++.+.++++|++. |+.++. .++-+++++...+......+||+.-==..+|.+|-+..+
T Consensus 29 ~l~~lv~~li~~Gv~gl~v~------GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~ 97 (301)
T 3m5v_A 29 SYARLIKRQIENGIDAVVPV------GTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAK 97 (301)
T ss_dssp HHHHHHHHHHHTTCCEEECS------STTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEC------ccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHH
Confidence 34566666667899999987 665551 122233444443433211378887666678888876543
No 238
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.20 E-value=1.7e+02 Score=22.19 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=40.6
Q ss_pred EEeEEEEccchhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 86 RPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 86 ~Pl~~i~~~~~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
.++.++........+.+.+.+++++++.|.+- ...+.....++++++.|+++....++||..=
T Consensus 115 ~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS------~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vG 177 (210)
T 1y80_A 115 GGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMS------ALLTTTMMNMKSTIDALIAAGLRDRVKVIVG 177 (210)
T ss_dssp TTCEEEECCSSBCHHHHHHHHHHHCCSEEEEE------CCSGGGTHHHHHHHHHHHHTTCGGGCEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe------ccccccHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 45666653333346788888899999988776 3334455677888888887521113676643
No 239
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=26.19 E-value=1.2e+02 Score=25.59 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEE
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL 153 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~l 153 (170)
++.+.+.+.+.|.|+|| + +|- +.....+....+.+++. +++||++
T Consensus 57 ~~~~~~~~sGtDai~VG---S-~~v-t~~~~~~~~~v~~ik~~---~~lPvil 101 (286)
T 3vk5_A 57 EKAAELTRLGFAAVLLA---S-TDY-ESFESHMEPYVAAVKAA---TPLPVVL 101 (286)
T ss_dssp HHHHHHHHTTCSCEEEE---C-SCC-SSHHHHHHHHHHHHHHH---CSSCEEE
T ss_pred HHHHHHHhcCCCEEEEc---c-CCC-CcchHHHHHHHHHHHHh---CCCCEEE
Confidence 34555567899999999 2 232 21245677888888886 3899998
No 240
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=26.15 E-value=74 Score=25.42 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=33.6
Q ss_pred HHHHHHHHHc-----CCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 100 LQLLEIAQRE-----ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 100 ~~L~~li~e~-----~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
+.|.+.++++ ++..|++..|-++.|..-+ +++.++..++. ++ ++.+||-++
T Consensus 160 ~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~----~~-~li~De~~~ 215 (399)
T 3tqx_A 160 GDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKY----NA-LVMVDDSHA 215 (399)
T ss_dssp THHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHc----CC-EEEEECCcc
Confidence 4566666654 7889999999998887665 33444333332 54 556898874
No 241
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=26.06 E-value=2.1e+02 Score=21.50 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
.+..+.+.+..+|.|++.+- |.|..+ -++++.|++..+ .+||+++-...+...+.+.+
T Consensus 57 ~~al~~~~~~~~dlvllD~~--lp~~~g------~~~~~~lr~~~~--~~~ii~lt~~~~~~~~~~~~ 114 (250)
T 3r0j_A 57 AQALDRARETRPDAVILDVX--MPGMDG------FGVLRRLRADGI--DAPALFLTARDSLQDKIAGL 114 (250)
T ss_dssp HHHHHHHHHHCCSEEEEESC--CSSSCH------HHHHHHHHHTTC--CCCEEEEECSTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCC--CCCCCH------HHHHHHHHhcCC--CCCEEEEECCCCHHHHHHHH
Confidence 34445566778999999853 333322 467777776643 78999887666655554443
No 242
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=25.96 E-value=2.2e+02 Score=21.65 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=26.9
Q ss_pred HHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHH
Q 030836 106 AQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165 (170)
Q Consensus 106 i~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~ 165 (170)
+...++|.||... .... ....++|++. ++|++.+|+..|.....+
T Consensus 55 i~~l~PDlIi~~~-----~~~~------~~~~~~L~~~----gipvv~~~~~~~~~~~~~ 99 (255)
T 3md9_A 55 ILAMKPTMLLVSE-----LAQP------SLVLTQIASS----GVNVVTVPGQTTPESVAM 99 (255)
T ss_dssp HHTTCCSEEEEET-----TCSC------HHHHHHHHHT----TCEEEEECCCCSHHHHHH
T ss_pred HHccCCCEEEEcC-----CcCc------hhHHHHHHHc----CCcEEEeCCCCCHHHHHH
Confidence 3456999888762 2211 2345667653 799999986544444433
No 243
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=25.77 E-value=1.3e+02 Score=26.08 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=17.4
Q ss_pred eEEEEecCCCeEEEEEecC
Q 030836 64 FSLGVDLGLSRTGLALSKG 82 (170)
Q Consensus 64 ~iLgID~G~kRiGVAvsD~ 82 (170)
.+||||+|+..|=+++.|.
T Consensus 5 ~~lgIDiGtT~~k~~l~d~ 23 (503)
T 2w40_A 5 VILSIDQSTQSTKVFFYDE 23 (503)
T ss_dssp EEEEEEECSSEEEEEEEET
T ss_pred EEEEEEeCCcceEEEEECC
Confidence 6899999999999999984
No 244
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=25.68 E-value=51 Score=28.97 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=18.2
Q ss_pred CceEEEEecCCCeEEEEEec
Q 030836 62 GGFSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD 81 (170)
.|.+||||+|.-.+=|++.+
T Consensus 67 ~G~~lalDlGGTn~Rv~~V~ 86 (451)
T 1bdg_A 67 TGNFLALDLGGTNYRVLSVT 86 (451)
T ss_dssp CEEEEEEEESSSSEEEEEEE
T ss_pred cceEEEEEeCCCeEEEEEEe
Confidence 37899999999999999887
No 245
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=25.60 E-value=2.5e+02 Score=22.89 Aligned_cols=63 Identities=5% Similarity=0.023 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhH----HHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQS----NKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~----~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
.+++.+++.+.++++||+. |+.++.. ++=+++.+...+... -.+||+.-==..+|.+|-+..+
T Consensus 39 l~~lv~~li~~Gv~gl~v~------GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg~~st~~ai~la~ 105 (304)
T 3cpr_A 39 GREVAAYLVDKGLDSLVLA------GTTGESPTTTAAEKLELLKAVREEVG-DRAKLIAGVGTNNTRTSVELAE 105 (304)
T ss_dssp HHHHHHHHHHTTCCEEEES------STTTTTTTSCHHHHHHHHHHHHHHHT-TTSEEEEECCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEC------ccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEecCCCCCHHHHHHHHH
Confidence 4566666667899999887 5544421 111233333333332 1478876656678888866543
No 246
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=25.57 E-value=2.5e+02 Score=22.93 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHcCCCEEEEeecCCCCCCCCh--------hHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 95 GEKLELQLLEIAQREETDEFIIGLPKSWDGSETP--------QSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 95 ~~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~--------~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
+.+..+++.+++.+.++++||+. |+.++ ..+.++..++....+ +||+.-==..+|.+|-+.
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~------GtTGE~~~Ls~eEr~~v~~~~~~~~~gr-----vpViaGvg~~~t~~ai~l 98 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVG------GSTGEAFVQSLSEREQVLEIVAEEAKGK-----IKLIAHVGCVSTAESQQL 98 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEES------STTTTGGGSCHHHHHHHHHHHHHHHTTT-----SEEEEECCCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC------eeccChhhCCHHHHHHHHHHHHHHhCCC-----CcEEEecCCCCHHHHHHH
Q ss_pred HHcC
Q 030836 167 MINM 170 (170)
Q Consensus 167 L~e~ 170 (170)
.+.+
T Consensus 99 a~~A 102 (303)
T 2wkj_A 99 AASA 102 (303)
T ss_dssp HHHH
T ss_pred HHHH
No 247
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=25.39 E-value=78 Score=25.96 Aligned_cols=53 Identities=13% Similarity=0.034 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHH
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSA 161 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~ 161 (170)
.+.|.+.+++ ++..|++-.|-++.|..-+ +++.++..++. ++ ++.+||.+++-
T Consensus 140 ~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~----~~-~li~D~~~~~~ 192 (398)
T 1gc0_A 140 LQALEAAMTP-ATRVIYFESPANPNMHMAD----IAGVAKIARKH----GA-TVVVDNTYCTP 192 (398)
T ss_dssp HHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHGGG----TC-EEEEECTTTHH
T ss_pred HHHHHHhcCC-CCeEEEEECCCCCCccccc----HHHHHHHHHHc----CC-EEEEECCCccc
Confidence 4556666543 6778999989988888765 34444444332 55 45689998753
No 248
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=25.38 E-value=1.7e+02 Score=23.80 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|.+++--|.--. .+ + +.+.+|-+.+++.. ++||+++|=
T Consensus 92 i~la~~a~~~Gadavlv~~P~y~~--~~-~-~~l~~~f~~va~a~---~lPiilYn~ 141 (297)
T 3flu_A 92 IALSQAAEKAGADYTLSVVPYYNK--PS-Q-EGIYQHFKTIAEAT---SIPMIIYNV 141 (297)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSC--CC-H-HHHHHHHHHHHHHC---CSCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCC--CC-H-HHHHHHHHHHHHhC---CCCEEEEEC
Confidence 466777888999999999887532 22 2 44555666777764 799999873
No 249
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=25.34 E-value=1.7e+02 Score=24.15 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|++.+--|.--. .+ .+.+.+|-+.+++.. ++||+++|=
T Consensus 108 i~la~~A~~~Gadavlv~~P~y~~--~s--~~~l~~~f~~va~a~---~lPiilYn~ 157 (314)
T 3qze_A 108 VALTEAAKSGGADACLLVTPYYNK--PT--QEGMYQHFRHIAEAV---AIPQILYNV 157 (314)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSC--CC--HHHHHHHHHHHHHHS---CSCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCC--CC--HHHHHHHHHHHHHhc---CCCEEEEeC
Confidence 466777888999999999886532 22 244566666777764 799999874
No 250
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=25.31 E-value=1.5e+02 Score=22.96 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=34.1
Q ss_pred HHHHHHHHHHc-CCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQRE-ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~-~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++. ++..|++-.|-++.|..-+ +++.++..++. ++ ++.+||.++
T Consensus 119 ~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~----~~-~li~Dea~~ 171 (366)
T 1m32_A 119 VQAIDAILNADPTISHIAMVHSETTTGMLNP----IDEVGALAHRY----GK-TYIVDAMSS 171 (366)
T ss_dssp HHHHHHHHHHCTTCCEEEEESEETTTTEECC----HHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHHhcCCCeEEEEEecccCCcceecC----HHHHHHHHHHc----CC-EEEEECCcc
Confidence 56788888765 5778888888777787655 33444444333 54 566798875
No 251
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=25.06 E-value=1.1e+02 Score=26.29 Aligned_cols=55 Identities=5% Similarity=-0.077 Sum_probs=35.9
Q ss_pred HHHHHHHHHHH-cCCCEEEEee----cCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 98 LELQLLEIAQR-EETDEFIIGL----PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 98 ~~~~L~~li~e-~~v~~IVVGl----Pl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
..+.|.+.+++ .++..|++.. |-++.|+.. .++++++..++. + +++ ++++||.+.
T Consensus 163 d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~----dl~~i~~ia~~~-~-~g~-~livD~a~~ 222 (427)
T 3hvy_A 163 DINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIA----EIAEIIKSIREV-N-ENV-IVFVDNCYG 222 (427)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHH----HHHHHHHHHHHH-C-SSS-EEEEECTTC
T ss_pred CHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHH----HHHHHHHHHHHh-C-CCC-EEEEECCcc
Confidence 35678888876 6788999998 888887653 345555444431 0 144 566898764
No 252
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=24.97 E-value=1.3e+02 Score=24.42 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
+.|.+.+. .++..|++-.|-+..|..-+. ..++++++..++. ++ ++.+||.++
T Consensus 163 ~~l~~~i~-~~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~~----~~-~li~De~~~ 215 (412)
T 2x5d_A 163 ERAIRESI-PKPRMMILGFPSNPTAQCVEL-DFFERVVALAKQY----DV-MVVHDLAYA 215 (412)
T ss_dssp HHHHHTEE-SCCSEEEEESSCTTTCCCCCH-HHHHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHhcc-cCceEEEECCCCCCCCCcCCH-HHHHHHHHHHHHc----CC-EEEEecccc
Confidence 45555554 478889998887777765432 3455566555443 54 456798875
No 253
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=24.90 E-value=1.7e+02 Score=23.82 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
.-++.+.+++.++|.+++--|.--. .+ .+.+.++-+.+++.. ++||+++|=
T Consensus 92 ai~la~~a~~~Gadavlv~~P~y~~--~s--~~~l~~~f~~va~a~---~lPiilYn~ 142 (301)
T 3m5v_A 92 AVGLAKFAKEHGADGILSVAPYYNK--PT--QQGLYEHYKAIAQSV---DIPVLLYNV 142 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSC--CC--HHHHHHHHHHHHHHC---SSCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCC--CC--HHHHHHHHHHHHHhC---CCCEEEEeC
Confidence 3467777888999999999887532 22 244555666777764 799999873
No 254
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=24.83 E-value=1.3e+02 Score=22.16 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=28.8
Q ss_pred CEEEEeecCCCCCCCCh-hHHHHHHHHHHHHHhhccCCccEEEEc--CcccHHHH
Q 030836 112 DEFIIGLPKSWDGSETP-QSNKVRSVAGRLAVRAAERGWRVYLLD--EHRTSAEA 163 (170)
Q Consensus 112 ~~IVVGlPl~~dGt~s~-~~~~vr~F~~~L~~~~~~~~lpV~lvD--ER~TT~eA 163 (170)
..|+|| -|+..+ ....+.++++.|+++.+...+.+.|++ ..-|-.+|
T Consensus 26 avlLv~-----HGS~~p~~~~~~~~la~~l~~~~~~~~V~~afle~~~~Psl~~~ 75 (156)
T 1tjn_A 26 GLVIVG-----HGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEA 75 (156)
T ss_dssp EEEEEE-----CCTTSTTHHHHHHHHHHHHHHHTSSSEEEEEECSSSCSSCHHHH
T ss_pred CEEEEE-----CCCCCHHHHHHHHHHHHHHHhhCCCCeEEEEEecCCCCCCHHHH
Confidence 467888 788775 445688899999887641123334555 44444444
No 255
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.78 E-value=2.1e+02 Score=24.75 Aligned_cols=59 Identities=7% Similarity=0.013 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccC-CccEEEEc-Cccc
Q 030836 97 KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAER-GWRVYLLD-EHRT 159 (170)
Q Consensus 97 ~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~-~lpV~lvD-ER~T 159 (170)
++.+.|.++++.++++.|+|-- .....-+-..+..+++.++++.+.. ++||+.++ +-|.
T Consensus 83 ~L~~aI~~~~~~~~P~~I~V~t----TC~~e~IGdDi~~v~~~~~~~~~~~~~~pvi~v~tpgf~ 143 (458)
T 1mio_B 83 NIKTAVKNIFSLYNPDIIAVHT----TCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTPSYV 143 (458)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEE----CHHHHHHTCCHHHHHHHHHHTTCSCTTCEEEEECCCTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEEC----CcHHHHHhcCHHHHHHHHHHhcCCCCCCeEEEEECCCCc
Confidence 4567889999999999987761 1111113334678888888874321 68999988 5554
No 256
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=24.77 E-value=1.3e+02 Score=20.32 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=22.3
Q ss_pred CCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEE
Q 030836 110 ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL 153 (170)
Q Consensus 110 ~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~l 153 (170)
+.|.||+|.|....|-..+ ..++.|.+++...+. +.++..
T Consensus 46 ~~d~vi~g~p~y~~~~~~~--~~~~~fl~~l~~~l~--~k~~~~ 85 (137)
T 2fz5_A 46 SKDVILLGCPAMGSEELED--SVVEPFFTDLAPKLK--GKKVGL 85 (137)
T ss_dssp TCSEEEEECCCBTTTBCCH--HHHHHHHHHHGGGCS--SCEEEE
T ss_pred cCCEEEEEccccCCCCCCH--HHHHHHHHHhhhhcC--CCEEEE
Confidence 5678888888764443221 025677777754332 445443
No 257
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=24.74 E-value=1.3e+02 Score=21.75 Aligned_cols=10 Identities=50% Similarity=0.704 Sum_probs=0.0
Q ss_pred EEEecCCCeE
Q 030836 66 LGVDLGLSRT 75 (170)
Q Consensus 66 LgID~G~kRi 75 (170)
-|+|.|+.+-
T Consensus 9 ~~~~~~~~~~ 18 (146)
T 2ht9_A 9 SGVDLGTENL 18 (146)
T ss_dssp ----------
T ss_pred ccccccccch
Confidence 3667776553
No 258
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=24.60 E-value=1.5e+02 Score=24.21 Aligned_cols=55 Identities=9% Similarity=-0.042 Sum_probs=33.8
Q ss_pred HHHHHHHHHH-------cCCCEE-EEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQR-------EETDEF-IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e-------~~v~~I-VVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++ .++..| |+-.|-+..|..-+. +..+++++..++ +++. +.+||-++
T Consensus 169 ~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~-~~l~~l~~~~~~----~~~~-li~De~~~ 231 (425)
T 1vp4_A 169 LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSL-EKRKALVEIAEK----YDLF-IVEDDPYG 231 (425)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCH-HHHHHHHHHHHH----TTCE-EEEECSST
T ss_pred HHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCH-HHHHHHHHHHHH----cCCE-EEEECCCc
Confidence 4567776665 367776 577887887876542 344555554444 2554 55798875
No 259
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=24.58 E-value=66 Score=25.73 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++.++..|++-.|-+..|..-+ .+.+.+++ ++. ++ ++.+||.++
T Consensus 132 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~-~~~i~~l~---~~~----~~-~li~Dea~~ 183 (396)
T 2ch1_A 132 LETLARAIELHQPKCLFLTHGDSSSGLLQP-LEGVGQIC---HQH----DC-LLIVDAVAS 183 (396)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECC-CTTHHHHH---HHT----TC-EEEEECTTT
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCceecC-HHHHHHHH---HHc----CC-EEEEEcccc
Confidence 567778777668899999888888887655 22333333 332 44 567899865
No 260
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=24.53 E-value=1.9e+02 Score=23.97 Aligned_cols=53 Identities=11% Similarity=-0.002 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL 154 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv 154 (170)
++++.+.+.+.++|.||+.-=+-..+..+ ......|.+.|++.. ..++||+.+
T Consensus 49 l~~~v~~~~~~~~D~VliaGDl~d~~~p~--~~~~~~~~~~l~~L~-~~~~pv~~v 101 (386)
T 3av0_A 49 FKLCIKKILEIKPDVVLHSGDLFNDLRPP--VKALRIAMQAFKKLH-ENNIKVYIV 101 (386)
T ss_dssp HHHHHHHHHTTCCSEEEECSCSBSSSSCC--HHHHHHHHHHHHHHH-HTTCEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCC--HHHHHHHHHHHHHHH-hcCCcEEEE
Confidence 45666777788999998873222122222 233334444443321 025788776
No 261
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=24.31 E-value=56 Score=31.34 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=18.3
Q ss_pred CceEEEEecCCCeEEEEEec
Q 030836 62 GGFSLGVDLGLSRTGLALSK 81 (170)
Q Consensus 62 ~g~iLgID~G~kRiGVAvsD 81 (170)
.|.+||||+|.-++=+++.|
T Consensus 77 ~G~~laiDlGGTnirv~lv~ 96 (917)
T 1cza_N 77 KGDFIALDLGGSSFRILRVQ 96 (917)
T ss_dssp CEEEEEEEESSSSEEEEEEE
T ss_pred cceEEEEEeCCCeEEEEEEE
Confidence 48899999999999999987
No 262
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=24.29 E-value=2.6e+02 Score=22.52 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCCCChhH----HHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQS----NKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~----~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
..+++.+++.+.++++||+. |+.++.. +.-+++++...+... -.+||+.-==..+|.+|-+..+
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~------GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg~~~t~~ai~la~ 89 (289)
T 2yxg_A 22 GLEENINFLIENGVSGIVAV------GTTGESPTLSHEEHKKVIEKVVDVVN-GRVQVIAGAGSNCTEEAIELSV 89 (289)
T ss_dssp HHHHHHHHHHHTTCSEEEES------STTTTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEECCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEC------ccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCCCCCHHHHHHHHH
Confidence 34566666667899999987 6655522 111233333333332 1478876656668888766543
No 263
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=24.27 E-value=1.7e+02 Score=23.67 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|.+.+--|.--. .+ .+.+.+|-+.+++.. ++||+++|=
T Consensus 86 i~la~~a~~~Gadavlv~~P~y~~--~~--~~~l~~~f~~ia~a~---~lPiilYn~ 135 (291)
T 3tak_A 86 IELTKAAKDLGADAALLVTPYYNK--PT--QEGLYQHYKAIAEAV---ELPLILYNV 135 (291)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSC--CC--HHHHHHHHHHHHHHC---CSCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCC--CC--HHHHHHHHHHHHHhc---CCCEEEEec
Confidence 466777788899999999887532 22 244556666777764 799999874
No 264
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=24.26 E-value=1.7e+02 Score=23.86 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
.-++.+.+++.++|.+++--|.--. .+ .+.+.++-+.+.+.. ++||+++|=
T Consensus 88 ai~la~~a~~~Gadavlv~~P~y~~--~~--~~~l~~~f~~va~a~---~lPiilYn~ 138 (300)
T 3eb2_A 88 AVAQAKLYEKLGADGILAILEAYFP--LK--DAQIESYFRAIADAV---EIPVVIYTN 138 (300)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCSSC--CC--HHHHHHHHHHHHHHC---SSCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCC--CC--HHHHHHHHHHHHHHC---CCCEEEEEC
Confidence 3466677788899999999887532 22 344556666777764 799999883
No 265
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=24.19 E-value=2e+02 Score=22.49 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
..+..++ ..++++|||. |.. ... +....+++.+. ++||+.+|..
T Consensus 51 ~~i~~li-~~~vdgiii~-~~~--~~~------~~~~~~~a~~~----gipvV~~d~~ 94 (316)
T 1tjy_A 51 QLVNNFV-NQGYDAIIVS-AVS--PDG------LCPALKRAMQR----GVKILTWDSD 94 (316)
T ss_dssp HHHHHHH-HTTCSEEEEC-CSS--SST------THHHHHHHHHT----TCEEEEESSC
T ss_pred HHHHHHH-HcCCCEEEEe-CCC--HHH------HHHHHHHHHHC----cCEEEEecCC
Confidence 4455665 5699999987 322 111 11233444443 8999999853
No 266
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=24.06 E-value=1.6e+02 Score=24.93 Aligned_cols=62 Identities=8% Similarity=-0.067 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e 169 (170)
..++.+.+++.+++.|.|..+.. ++.... -..+++.+++.+ ++||+.. ..+|...|++.+.+
T Consensus 252 ~~~~a~~l~~~G~d~i~v~~~~~-~~~~~~----~~~~~~~i~~~~---~iPvi~~-Ggi~~~~a~~~l~~ 313 (365)
T 2gou_A 252 YTAAAALLNKHRIVYLHIAEVDW-DDAPDT----PVSFKRALREAY---QGVLIYA-GRYNAEKAEQAIND 313 (365)
T ss_dssp HHHHHHHHHHTTCSEEEEECCBT-TBCCCC----CHHHHHHHHHHC---CSEEEEE-SSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCc-CCCCCc----cHHHHHHHHHHC---CCcEEEe-CCCCHHHHHHHHHC
Confidence 45678888899999999985421 122110 025777888775 7898876 45588889888764
No 267
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=24.05 E-value=1.7e+02 Score=24.18 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|.+++--|.--. .+ .+.+.+|-+.+++.. ++||+++|=
T Consensus 109 i~la~~A~~~Gadavlv~~P~y~~--~s--~~~l~~~f~~va~a~---~lPiilYn~ 158 (315)
T 3na8_A 109 VRRAQFAESLGAEAVMVLPISYWK--LN--EAEVFQHYRAVGEAI---GVPVMLYNN 158 (315)
T ss_dssp HHHHHHHHHTTCSEEEECCCCSSC--CC--HHHHHHHHHHHHHHC---SSCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEECCCCCCC--CC--HHHHHHHHHHHHHhC---CCcEEEEeC
Confidence 466777888999999999886532 22 345566666777764 799999883
No 268
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=23.93 E-value=2.3e+02 Score=24.03 Aligned_cols=56 Identities=7% Similarity=-0.094 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e 169 (170)
..++.+.+++.+++.|-|-.+. .++ .|++.+++.+ ++||+..-- +|-..|++.+.+
T Consensus 244 ~~~la~~l~~~Gvd~i~v~~~~-----~~~------~~~~~ik~~~---~iPvi~~Gg-it~e~a~~~l~~ 299 (362)
T 4ab4_A 244 FTYVARELGKRGIAFICSRERE-----ADD------SIGPLIKEAF---GGPYIVNER-FDKASANAALAS 299 (362)
T ss_dssp HHHHHHHHHHTTCSEEEEECCC-----CTT------CCHHHHHHHH---CSCEEEESS-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEECCCC-----CCH------HHHHHHHHHC---CCCEEEeCC-CCHHHHHHHHHc
Confidence 3567777888899998776332 221 4667777765 689887755 488889888754
No 269
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=23.86 E-value=1.9e+02 Score=22.37 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=34.9
Q ss_pred HHHHHHHHHHc------CCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 99 ELQLLEIAQRE------ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 99 ~~~L~~li~e~------~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
.+.|.+.+++. ++..|++-.| +..|..-+. +.++++++..++. ++ ++.+||-+
T Consensus 128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~-~~l~~i~~~~~~~----~~-~li~De~~ 186 (359)
T 1svv_A 128 VADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTK-QELEDISASCKEH----GL-YLFLDGAR 186 (359)
T ss_dssp HHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCH-HHHHHHHHHHHHH----TC-EEEEECTT
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCH-HHHHHHHHHHHHh----CC-EEEEEccc
Confidence 56788888775 3778888777 666765553 4556666555543 54 56789987
No 270
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=23.71 E-value=1.1e+02 Score=24.96 Aligned_cols=57 Identities=12% Similarity=-0.021 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcC-CCEEEEeecCCC-CCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 98 LELQLLEIAQREE-TDEFIIGLPKSW-DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 98 ~~~~L~~li~e~~-v~~IVVGlPl~~-dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
..+.|.+.++++. -..+|+=.|.+. .|...+..+..++.++..++ +++ ++.+||-++
T Consensus 185 d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~----~~~-~li~DEv~~ 243 (427)
T 3fq8_A 185 DLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLE----HDA-LLVFDEVIT 243 (427)
T ss_dssp CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH----TTC-EEEEECTTT
T ss_pred CHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH----cCC-EEEEecccc
Confidence 3567888887652 234555566553 34444433334444443333 355 556899887
No 271
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=23.66 E-value=2.5e+02 Score=22.74 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCCCChhH----HHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQS----NKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~----~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
..+++.+++.+.++++||+. |+.++.. +.-+++.+...+... -.+||+.-==..+|.+|-+..+
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~------GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~ 89 (294)
T 2ehh_A 22 ALGNLIEFHVDNGTDAILVC------GTTGESPTLTFEEHEKVIEFAVKRAA-GRIKVIAGTGGNATHEAVHLTA 89 (294)
T ss_dssp HHHHHHHHHHTTTCCEEEES------STTTTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEECCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEC------ccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEecCCCCHHHHHHHHH
Confidence 34566666667899999987 6555521 111233333333332 1478876656678888866543
No 272
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=23.66 E-value=2.5e+02 Score=22.95 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|++.+--|.--. .+ + +.+.++-+.+++.. ++||+++|=
T Consensus 101 i~la~~A~~~Gadavlv~~P~y~~--~~-~-~~l~~~f~~ia~a~---~lPiilYn~ 150 (304)
T 3cpr_A 101 VELAEAAASAGADGLLVVTPYYSK--PS-Q-EGLLAHFGAIAAAT---EVPICLYDI 150 (304)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSC--CC-H-HHHHHHHHHHHHHC---CSCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEECCCCCCC--CC-H-HHHHHHHHHHHHhc---CCCEEEEeC
Confidence 466777788999999999986532 22 3 44455555666663 799999884
No 273
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=23.56 E-value=2.1e+02 Score=21.08 Aligned_cols=59 Identities=7% Similarity=0.009 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEeecCCCCC-CCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 97 KLELQLLEIAQREETDEFIIGLPKSWDG-SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 97 ~~~~~L~~li~e~~v~~IVVGlPl~~dG-t~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
+....+.+++++++++.+|+=.|-.+.+ ......+.+..+.+.+++ .+++|+++.+...
T Consensus 115 ~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~----~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 115 EFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAG----TGCTSIFVSQVSV 174 (247)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHH----TTCEEEEEEECC-
T ss_pred HHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHH----CCCeEEEEecCCC
Confidence 3456788888889999999987766543 222233444444444433 4789998865543
No 274
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=23.48 E-value=3.3e+02 Score=22.80 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=37.5
Q ss_pred HHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEE---cCcccHHHHHHHHHc
Q 030836 102 LLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL---DEHRTSAEAVDRMIN 169 (170)
Q Consensus 102 L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lv---DER~TT~eA~~~L~e 169 (170)
-.+.+.+.++++||+|. ++.||+... ..++.+. +.. .+++|+|- |+-....+|-+.+++
T Consensus 116 dI~~~~~~GAdGvVfG~-L~~dg~iD~--~~~~~Li----~~a--~~l~vTFHRAFD~~~d~~~Ale~Li~ 177 (287)
T 3iwp_A 116 DIRLAKLYGADGLVFGA-LTEDGHIDK--ELCMSLM----AIC--RPLPVTFHRAFDMVHDPMAALETLLT 177 (287)
T ss_dssp HHHHHHHTTCSEEEECC-BCTTSCBCH--HHHHHHH----HHH--TTSCEEECGGGGGCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEee-eCCCCCcCH--HHHHHHH----HHc--CCCcEEEECchhccCCHHHHHHHHHH
Confidence 33455678999999995 556887763 2222332 222 25788864 777677788777654
No 275
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=23.37 E-value=1.2e+02 Score=24.33 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
..++.+.+...++|+||+- |... .. .+.+.+.+. ++||+++|...
T Consensus 117 ~~~~~~~l~~~~vdGiIi~-~~~~---~~-------~~~~~l~~~----~iPvV~i~~~~ 161 (366)
T 3h5t_A 117 HVSAQQLVNNAAVDGVVIY-SVAK---GD-------PHIDAIRAR----GLPAVIADQPA 161 (366)
T ss_dssp HHHHHHHHHTCCCSCEEEE-SCCT---TC-------HHHHHHHHH----TCCEEEESSCC
T ss_pred HHHHHHHHHhCCCCEEEEe-cCCC---Ch-------HHHHHHHHC----CCCEEEECCcc
Confidence 4456667777899999986 2211 11 233445443 78888887543
No 276
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=23.32 E-value=1.9e+02 Score=23.91 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|++++--|.--. .+ .+.+.++-+.+++.. ++||+++|=
T Consensus 107 i~la~~A~~~Gadavlv~~P~y~~--~~--~~~l~~~f~~va~a~---~lPiilYn~ 156 (315)
T 3si9_A 107 VELAKHAEKAGADAVLVVTPYYNR--PN--QRGLYTHFSSIAKAI---SIPIIIYNI 156 (315)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSC--CC--HHHHHHHHHHHHHHC---SSCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEECCCCCCC--CC--HHHHHHHHHHHHHcC---CCCEEEEeC
Confidence 467777888999999999887532 22 244556666777764 799999884
No 277
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=23.19 E-value=2.5e+02 Score=22.70 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|.+++--|.--.. + + +.+.++-+.+++.. ++||+++|=
T Consensus 89 i~la~~a~~~Gadavlv~~P~y~~~--~-~-~~l~~~f~~va~a~---~lPiilYn~ 138 (293)
T 1f6k_A 89 VELGKYATELGYDCLSAVTPFYYKF--S-F-PEIKHYYDTIIAET---GSNMIVYSI 138 (293)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCC--C-H-HHHHHHHHHHHHHH---CCCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCC--C-H-HHHHHHHHHHHHhC---CCCEEEEEC
Confidence 4667777889999999998875322 2 3 44455555666664 689999883
No 278
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=23.14 E-value=2.6e+02 Score=21.49 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
.+..++ ..++|+||+- |...+. . ....+.+.+. ++||+++|..
T Consensus 50 ~i~~l~-~~~vdgiIi~-~~~~~~--~------~~~~~~~~~~----~iPvV~~~~~ 92 (306)
T 2vk2_A 50 AVRSFV-AQGVDAIFIA-PVVATG--W------EPVLKEAKDA----EIPVFLLDRS 92 (306)
T ss_dssp HHHHHH-HHTCSEEEEC-CSSSSS--C------HHHHHHHHHT----TCCEEEESSC
T ss_pred HHHHHH-HcCCCEEEEe-CCChhh--H------HHHHHHHHHC----CCCEEEecCC
Confidence 344444 5689999985 322111 1 1233444443 7899998854
No 279
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=23.03 E-value=1.7e+02 Score=23.76 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCC--EEEEeecCCCCC--CCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 98 LELQLLEIAQREETD--EFIIGLPKSWDG--SETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 98 ~~~~L~~li~e~~v~--~IVVGlPl~~dG--t~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
+...+++++++++++ .|||=+=-.+.. ......+.+..+...|+....+.++||+++-+
T Consensus 167 i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsq 229 (315)
T 3bh0_A 167 IWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQ 229 (315)
T ss_dssp HHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 345677888888999 888853322322 11223345666666665332224899999865
No 280
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.01 E-value=3.1e+02 Score=22.38 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChh----HHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQ----SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~----~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
.+++.+++.+.++++|++. |+.++. .++-+++++...+... -.+||+.-==..+|.+|-+..+
T Consensus 38 l~~lv~~li~~Gv~gi~v~------GttGE~~~Lt~~Er~~v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~ 104 (304)
T 3l21_A 38 AARLANHLVDQGCDGLVVS------GTTGESPTTTDGEKIELLRAVLEAVG-DRARVIAGAGTYDTAHSIRLAK 104 (304)
T ss_dssp HHHHHHHHHHTTCSEEEES------STTTTGGGSCHHHHHHHHHHHHHHHT-TTSEEEEECCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeC------ccccchhhCCHHHHHHHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHH
Confidence 4566666667899999987 665551 1222334444333332 2478887666678888876543
No 281
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.82 E-value=1.3e+02 Score=23.18 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
..+.+.+...++|+||+- |... .. ...+.+.+. ++||+++|...
T Consensus 73 ~~~~~~l~~~~vdgiIi~-~~~~---~~-------~~~~~l~~~----~iPvV~i~~~~ 116 (305)
T 3huu_A 73 HEVKTMIQSKSVDGFILL-YSLK---DD-------PIEHLLNEF----KVPYLIVGKSL 116 (305)
T ss_dssp HHHHHHHHTTCCSEEEES-SCBT---TC-------HHHHHHHHT----TCCEEEESCCC
T ss_pred HHHHHHHHhCCCCEEEEe-CCcC---Cc-------HHHHHHHHc----CCCEEEECCCC
Confidence 456666777899999985 2221 11 233445443 78999998654
No 282
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=22.80 E-value=2.2e+02 Score=20.62 Aligned_cols=53 Identities=11% Similarity=0.047 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEA 163 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA 163 (170)
+..+.+.+..+|.|++.+-. .+..+ -.+++.|++..+ ++||+++-...+...+
T Consensus 37 ~a~~~~~~~~~dlvllD~~l--~~~~g------~~~~~~lr~~~~--~~~ii~ls~~~~~~~~ 89 (225)
T 1kgs_A 37 EGMYMALNEPFDVVILDIML--PVHDG------WEILKSMRESGV--NTPVLMLTALSDVEYR 89 (225)
T ss_dssp HHHHHHHHSCCSEEEEESCC--SSSCH------HHHHHHHHHTTC--CCCEEEEESSCHHHHH
T ss_pred HHHHHHhcCCCCEEEEeCCC--CCCCH------HHHHHHHHhcCC--CCCEEEEeCCCCHHHH
Confidence 33455667899999998643 23222 356777776543 7899988655444433
No 283
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=22.75 E-value=2.1e+02 Score=25.62 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEeecCCCCCC--CChhHHHHHHHHHHHHHhhccCCccEEEEc-Cccc
Q 030836 97 KLELQLLEIAQREETDEFIIGLPKSWDGS--ETPQSNKVRSVAGRLAVRAAERGWRVYLLD-EHRT 159 (170)
Q Consensus 97 ~~~~~L~~li~e~~v~~IVVGlPl~~dGt--~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD-ER~T 159 (170)
++.+.|.++++.++++.|+|- +| ..-+-..+..+++.+++++ ++||+.++ +-|.
T Consensus 121 kL~~aI~~~~~~~~P~~I~V~------tTC~~eiIGdDi~~v~~~~~~~~---~~pVi~v~tpGf~ 177 (533)
T 1mio_A 121 KLKDAIHEAYEMFHPAAIGVY------ATCPVGLIGDDILAVAATASKEI---GIPVHAFSCEGYK 177 (533)
T ss_dssp HHHHHHHHHHHHTCCSEEEEC------CCHHHHHHTCCHHHHHHHHHHHH---SSCEEECCCCTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEE------cCCHHHHhcCCHHHHHHHHHHhh---CCcEEEEeCCCCc
Confidence 445678889999999998887 22 1113334678898888875 79999997 5444
No 284
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=22.65 E-value=2.5e+02 Score=23.33 Aligned_cols=65 Identities=18% Similarity=0.034 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHcCCCEEEEeecCCCCCCCCh--------hHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 95 GEKLELQLLEIAQREETDEFIIGLPKSWDGSETP--------QSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 95 ~~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~--------~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
+.+..+++.+++.+.++++||+. |+.++ ..+.++..++....+ +||+.===..+|.+|-+.
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~------GtTGE~~~Ls~eEr~~vi~~~ve~~~gr-----vpViaGvg~~st~eai~l 121 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGIL------GSTGIYMYLTREERRRAIEAAATILRGR-----RTLMAGIGALRTDEAVAL 121 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEES------STTTTGGGSCHHHHHHHHHHHHHHHTTS-----SEEEEEECCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC------ccccChhhCCHHHHHHHHHHHHHHhCCC-----CcEEEecCCCCHHHHHHH
Q ss_pred HHcC
Q 030836 167 MINM 170 (170)
Q Consensus 167 L~e~ 170 (170)
.+.+
T Consensus 122 a~~A 125 (332)
T 2r8w_A 122 AKDA 125 (332)
T ss_dssp HHHH
T ss_pred HHHH
No 285
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=22.62 E-value=1.5e+02 Score=19.59 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHH--hhccCCccEEEEc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAV--RAAERGWRVYLLD 155 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~--~~~~~~lpV~lvD 155 (170)
.+..+.+.+..++.||+.+-+. +..+ ..+++.|++ .. ..+||+++-
T Consensus 41 ~~a~~~l~~~~~dlii~d~~l~--~~~g------~~~~~~l~~~~~~--~~~pii~~s 88 (142)
T 3cg4_A 41 GQCIDLLKKGFSGVVLLDIMMP--GMDG------WDTIRAILDNSLE--QGIAIVMLT 88 (142)
T ss_dssp HHHHHHHHTCCCEEEEEESCCS--SSCH------HHHHHHHHHTTCC--TTEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCC--CCCH------HHHHHHHHhhccc--CCCCEEEEE
Confidence 3445566677899999986432 3222 356777776 33 368888763
No 286
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=22.43 E-value=2.2e+02 Score=20.54 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+++.+..+|.|++.+- |.|..+ -.+++.|++..+ .+||+++-...+...+.+.+
T Consensus 42 ~al~~~~~~~~dlvllD~~--lp~~~g------~~~~~~lr~~~~--~~~ii~ls~~~~~~~~~~~~ 98 (215)
T 1a04_A 42 QGIELAESLDPDLILLDLN--MPGMNG------LETLDKLREKSL--SGRIVVFSVSNHEEDVVTAL 98 (215)
T ss_dssp HHHHHHHHHCCSEEEEETT--STTSCH------HHHHHHHHHSCC--CSEEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEeCC--CCCCcH------HHHHHHHHHhCC--CCcEEEEECCCCHHHHHHHH
Confidence 3345566778999999863 333322 366777776643 68888876554444444433
No 287
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=22.35 E-value=2.1e+02 Score=23.14 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|.++|--|.--.. + + +.+.++-+.+++.. ++||+++|=
T Consensus 85 i~la~~A~~~Gadavlv~~P~y~~~--s-~-~~l~~~f~~ia~a~---~lPiilYn~ 134 (292)
T 2vc6_A 85 IAFVRHAQNAGADGVLIVSPYYNKP--T-Q-EGIYQHFKAIDAAS---TIPIIVYNI 134 (292)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCC--C-H-HHHHHHHHHHHHHC---SSCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCC--C-H-HHHHHHHHHHHHhC---CCCEEEEeC
Confidence 4677778889999999999965322 2 2 44555556676664 799999873
No 288
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=22.32 E-value=1.8e+02 Score=22.43 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHh-----hccCCccEEEEcCcc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVR-----AAERGWRVYLLDEHR 158 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~-----~~~~~lpV~lvDER~ 158 (170)
+.|.+.+++.+...|.|+ |..++ ..+.+.|... ++-.++-|+..|||+
T Consensus 18 ~~l~~~i~~~~~~~i~ls------gG~T~-----~~~~~~L~~~~~~~~~~~~~v~v~~lder~ 70 (242)
T 2bkx_A 18 RITADTIKEKPDAVLGLA------TGGTP-----EGTYRQLIRLHQTENLSFQNITTVNLDEYA 70 (242)
T ss_dssp HHHHHHHHHCTTCEEEEC------CSSTT-----HHHHHHHHHHHHHSCCCCTTCEEEESEEET
T ss_pred HHHHHHHHHCCCeEEEEC------CCCCH-----HHHHHHHHHHhhccCCChhheEEEeCcccc
Confidence 456666666444444444 44443 3444455421 111367788889987
No 289
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=22.27 E-value=1.1e+02 Score=23.37 Aligned_cols=43 Identities=14% Similarity=0.039 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHR 158 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~ 158 (170)
.+..++ ..++|+||+. |...++... ..+.+. . ++||+++|...
T Consensus 55 ~~~~~~-~~~vdgiii~-~~~~~~~~~--------~~~~~~-~----~iPvV~~~~~~ 97 (304)
T 3o1i_D 55 QLALCT-QWGANAIILG-TVDPHAYEH--------NLKSWV-G----NTPVFATVNQL 97 (304)
T ss_dssp HHHHHH-HHTCSEEEEC-CSSTTSSTT--------THHHHT-T----TSCEEECSSCC
T ss_pred HHHHHH-HcCCCEEEEe-CCChhHHHH--------HHHHHc-C----CCCEEEecCCC
Confidence 444444 4689999997 444332221 223343 2 79999998665
No 290
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85, glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A {Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Probab=22.26 E-value=2.2e+02 Score=26.32 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
..++|.++++.|+.|++.|=.=. ++-....+...+.|.+.|++..+ .+..|++.|=
T Consensus 157 ~a~kLv~~a~~yGFDGw~IN~E~--~~~~~~~~~~l~~F~~~L~~~~~-~~~~v~WYDs 212 (626)
T 2vtf_A 157 LADKLLEVADYYGFDGWFINQQT--EGADEGTAEAMQAFLVYLQEQKP-EGMHIMWYDS 212 (626)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECC--TTCCHHHHHHHHHHHHHHHHHSC-TTCEEEEESC
T ss_pred HHHHHHHHHHHhCCCceEEeecc--ccCCHHHHHHHHHHHHHHHHhCC-CCcEEEEeec
Confidence 45789999999999999987421 12344578889999999998764 2467888773
No 291
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.1.16.3
Probab=22.06 E-value=1.5e+02 Score=23.78 Aligned_cols=38 Identities=5% Similarity=0.215 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHH
Q 030836 97 KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRL 140 (170)
Q Consensus 97 ~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L 140 (170)
+..++|.++.+ .++|.++++.|... ...+.++.|++.+
T Consensus 281 ~v~~~l~~~~~-~G~d~~~l~~~~~~-----~~~~~l~~~a~~V 318 (321)
T 1f07_A 281 EFIPKIEALGE-MGVTQYVAGSPIGP-----DKEKSIKLLGEVI 318 (321)
T ss_dssp HHHHHHHHHHH-TTCCEEEEEEEECS-----SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCEEEEcCCCCc-----cHHHHHHHHHHhh
Confidence 44577888877 89999999776431 1445566666644
No 292
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=21.95 E-value=1.6e+02 Score=24.24 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
.-++.+.+++.++|.+++--|.--.. + .+.+.+|-+.+.+.. ++||+++|=
T Consensus 99 ai~la~~a~~~Gadavlv~~P~y~~~--s--~~~l~~~f~~va~a~---~lPiilYn~ 149 (304)
T 3l21_A 99 SIRLAKACAAEGAHGLLVVTPYYSKP--P--QRGLQAHFTAVADAT---ELPMLLYDI 149 (304)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCSSCC--C--HHHHHHHHHHHHTSC---SSCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCC--C--HHHHHHHHHHHHHhc---CCCEEEEeC
Confidence 34667778888999999998875332 2 244555566676653 799999873
No 293
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=21.91 E-value=1.6e+02 Score=23.58 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=33.4
Q ss_pred HHHHHHHHH----H-cCCCEE-EEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQ----R-EETDEF-IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~----e-~~v~~I-VVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.++ + .++..| ++-.|-++.|..-+. +..++.++..++. ++ ++.+||.++
T Consensus 158 ~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~-~~l~~i~~~~~~~----~~-~li~De~~~ 218 (407)
T 2zc0_A 158 VDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSM-ERRKALLEIASKY----DL-LIIEDTAYN 218 (407)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCH-HHHHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCH-HHHHHHHHHHHHc----CC-EEEEECCCc
Confidence 456777666 3 256665 467777888876653 3445555544443 55 455788765
No 294
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.86 E-value=2.5e+02 Score=21.33 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
.+..++ ..++++||+. +... .......+.+.+. ++||+++|-.
T Consensus 53 ~~~~l~-~~~vdgiii~------~~~~---~~~~~~~~~~~~~----~ipvV~~~~~ 95 (303)
T 3d02_A 53 IIEDLI-ARKVDAITIV------PNDA---NVLEPVFKKARDA----GIVVLTNESP 95 (303)
T ss_dssp HHHHHH-HTTCSEEEEC------CSCH---HHHHHHHHHHHHT----TCEEEEESCT
T ss_pred HHHHHH-HcCCCEEEEe------cCCh---HHHHHHHHHHHHC----CCeEEEEecC
Confidence 455554 5789999987 2211 1222334455443 7899998854
No 295
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=21.78 E-value=1.2e+02 Score=24.57 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+. .++..|++-.|-+..|..-+. ...+++++..++. ++ ++.+||.++
T Consensus 150 ~~~l~~~l~-~~~~~v~l~~~~nptG~~~~~-~~l~~i~~~~~~~----~~-~li~De~~~ 203 (411)
T 2o0r_A 150 ADALRRAVT-PRTRALIINSPHNPTGAVLSA-TELAAIAEIAVAA----NL-VVITDEVYE 203 (411)
T ss_dssp HHHHHHHCC-TTEEEEEEESSCTTTCCCCCH-HHHHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHhhc-cCceEEEEeCCCCCCCCCCCH-HHHHHHHHHHHHc----CC-EEEEEcccc
Confidence 456666664 367788888888888876542 3445555544442 54 556898875
No 296
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=21.74 E-value=2.3e+02 Score=23.00 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|.+++--|.--.. + + +.+.++-+.+++.. ++||+++|=
T Consensus 85 i~la~~A~~~Gadavlv~~P~y~~~--s-~-~~l~~~f~~va~a~---~lPiilYn~ 134 (294)
T 2ehh_A 85 VHLTAHAKEVGADGALVVVPYYNKP--T-Q-RGLYEHFKTVAQEV---DIPIIIYNI 134 (294)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCC--C-H-HHHHHHHHHHHHHC---CSCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCC--C-H-HHHHHHHHHHHHhc---CCCEEEEeC
Confidence 4567777889999999998875322 2 3 44455555676663 799999883
No 297
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=21.69 E-value=1.6e+02 Score=25.60 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHH
Q 030836 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAV 142 (170)
Q Consensus 98 ~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~ 142 (170)
.++++.+++.++++|.||++-=+-.++ .+..+.+..|.+.|++
T Consensus 40 ~l~~lv~~~~~~~~D~VliaGDLfd~~--~p~~~~~~~~~~~lr~ 82 (417)
T 4fbw_A 40 SFNEILEIARERDVDMILLGGDIFHDN--KPSRKALYQALRSLRL 82 (417)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCCBSSS--SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCC--CCCHHHHHHHHHHHHH
Confidence 457888888899999999984333223 3344555666666665
No 298
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=21.48 E-value=2.6e+02 Score=21.29 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
++.+.+...++|+||+- |.. .. ....+.+.+. ++||+++|..
T Consensus 63 ~~~~~l~~~~vdgiIi~-~~~----~~------~~~~~~l~~~----~iPvV~~~~~ 104 (289)
T 2fep_A 63 HLLNTMLGKQVDGIVFM-GGN----IT------DEHVAEFKRS----PVPIVLAASV 104 (289)
T ss_dssp HHHHHHHHTTCSEEEEC-CSC----CC------HHHHHHHHHS----SSCEEEESCC
T ss_pred HHHHHHHhCCCCEEEEe-cCC----CC------HHHHHHHHhc----CCCEEEEccc
Confidence 33444456799999985 211 11 1233445432 7899988854
No 299
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=21.47 E-value=2.8e+02 Score=22.74 Aligned_cols=49 Identities=12% Similarity=-0.071 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLD 155 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvD 155 (170)
-++.+.+++.++|.+.|--|.--.. + + +.+.++-+.+++.. ++||+++|
T Consensus 96 i~la~~A~~~Gadavlv~~P~y~~~--s-~-~~l~~~f~~va~a~---~lPiilYn 144 (314)
T 3d0c_A 96 IELGKSAIDSGADCVMIHQPVHPYI--T-D-AGAVEYYRNIIEAL---DAPSIIYF 144 (314)
T ss_dssp HHHHHHHHHTTCSEEEECCCCCSCC--C-H-HHHHHHHHHHHHHS---SSCEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCC--C-H-HHHHHHHHHHHHhC---CCCEEEEe
Confidence 3667777889999999998865322 2 2 34555556677664 79999999
No 300
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=21.46 E-value=2.6e+02 Score=23.36 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHcCCCEEEEeecCCCCCCCCh--------hHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 95 GEKLELQLLEIAQREETDEFIIGLPKSWDGSETP--------QSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 95 ~~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~--------~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
+.+..+++.+++.+.++++||+. |+.++ ..+.++..++....+ +||+.===..+|.+|-+.
T Consensus 50 D~~~l~~lv~~li~~Gv~Gl~v~------GtTGE~~~Ls~eEr~~vi~~~ve~~~gr-----vpViaGvg~~st~eai~l 118 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDGLFFL------GSGGEFSQLGAEERKAIARFAIDHVDRR-----VPVLIGTGGTNARETIEL 118 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEES------STTTTGGGSCHHHHHHHHHHHHHHHTTS-----SCEEEECCSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeC------ccccChhhCCHHHHHHHHHHHHHHhCCC-----CcEEEecCCCCHHHHHHH
Q ss_pred HHcC
Q 030836 167 MINM 170 (170)
Q Consensus 167 L~e~ 170 (170)
.+.+
T Consensus 119 a~~A 122 (343)
T 2v9d_A 119 SQHA 122 (343)
T ss_dssp HHHH
T ss_pred HHHH
No 301
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=21.45 E-value=1.8e+02 Score=22.80 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHHHHHHH-cCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQR-EETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e-~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++ .++..|++-.|-+..|..-+ ++++++..++. ++ .+.+||-++
T Consensus 134 ~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~----~~-~li~D~a~~ 186 (386)
T 2dr1_A 134 PEDLDDALRKNPDVEAVTITYNETSTGVLNP----LPELAKVAKEH----DK-LVFVDAVSA 186 (386)
T ss_dssp HHHHHHHHHHCTTCCEEEEESEETTTTEECC----HHHHHHHHHHT----TC-EEEEECTTT
T ss_pred HHHHHHHHhcCCCCcEEEEEeecCCcchhCC----HHHHHHHHHHc----CC-eEEEEcccc
Confidence 5677777765 57889999888888887655 34444443332 54 567788765
No 302
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=21.37 E-value=47 Score=29.16 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhcc-CCccEEEEc-Cccc
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAE-RGWRVYLLD-EHRT 159 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~-~~lpV~lvD-ER~T 159 (170)
+++.+.|.+++++++++.|+|-- .....-+-..+..+++.++++++. .++||+.++ +-|.
T Consensus 78 ~~L~~~I~~~~~~~~P~~I~V~t----TC~~e~IGdDi~~v~~~~~~~~~~~~~~pVi~v~tpgf~ 139 (458)
T 3pdi_B 78 ENVVEALKTICERQNPSVIGLLT----TGLSETQGCDLHTALHEFRTQYEEYKDVPIVPVNTPDFS 139 (458)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEEE----CHHHHTTCTTHHHHHHHTTTSCCSCSCSCEEEECCCTTS
T ss_pred HHHHHHHHHHHHhcCCCEEEEEC----CcHHHHhcCCHHHHHHHHHHhccccCCCeEEEeeCCCcC
Confidence 35678899999999999988761 111111334577888888876532 278999998 6554
No 303
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=21.26 E-value=1.8e+02 Score=18.94 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+..+.+.+..++.|++.+-. .+..+ ..+++.|++.....++||+++-...+
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~l--~~~~g------~~~~~~l~~~~~~~~~pii~~s~~~~ 88 (133)
T 3nhm_A 37 ASGLQQALAHPPDVLISDVNM--DGMDG------YALCGHFRSEPTLKHIPVIFVSGYAP 88 (133)
T ss_dssp HHHHHHHHHSCCSEEEECSSC--SSSCH------HHHHHHHHHSTTTTTCCEEEEESCCC
T ss_pred HHHHHHHhcCCCCEEEEeCCC--CCCCH------HHHHHHHHhCCccCCCCEEEEeCCCc
Confidence 344456677899999999643 23222 46777777652113689888765433
No 304
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=21.23 E-value=2.1e+02 Score=23.35 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|.++|--|.--.. + + +.+.++-+.+++.. ++||+++|=
T Consensus 97 i~la~~A~~~Gadavlv~~P~y~~~--s-~-~~l~~~f~~va~a~---~lPiilYn~ 146 (301)
T 1xky_A 97 IDLTKKATEVGVDAVMLVAPYYNKP--S-Q-EGMYQHFKAIAEST---PLPVMLYNV 146 (301)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCC--C-H-HHHHHHHHHHHHTC---SSCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCC--C-H-HHHHHHHHHHHHhc---CCCEEEEeC
Confidence 4667777889999999999975322 2 2 44555556677653 799999884
No 305
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=21.11 E-value=73 Score=28.14 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeecCCCCCCC--ChhHHHHHHHHHHHHHhhccCCccEEEEc-Cccc
Q 030836 96 EKLELQLLEIAQREETDEFIIGLPKSWDGSE--TPQSNKVRSVAGRLAVRAAERGWRVYLLD-EHRT 159 (170)
Q Consensus 96 ~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~--s~~~~~vr~F~~~L~~~~~~~~lpV~lvD-ER~T 159 (170)
+++.+.|.++.++++++.|+|- +|. .-+-..+..+++++++. .++||+.++ +-|.
T Consensus 74 ~kL~~~I~~~~~~~~P~~I~V~------tTC~~e~IGdDi~~v~~~~~~~---~g~pVi~v~tpgf~ 131 (511)
T 2xdq_B 74 EKVVDNIIRKDTEEHPDLIVLT------PTCTSSILQEDLQNFVRRASLS---TTADVLLADVNHYR 131 (511)
T ss_dssp SHHHHHHHHHHHHHCCSEEEEE------CCHHHHTTCCCHHHHHHHHHHH---CSSEEEECCCCTTT
T ss_pred HHHHHHHHHHHHhcCCCEEEEe------CCcHHHHhccCHHHHHHHhhhc---cCCCEEEeeCCCcc
Confidence 3567889999999999988776 221 11234567888888875 379999987 4443
No 306
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=21.10 E-value=3.3e+02 Score=21.95 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCCh----hHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETP----QSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~----~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
.+++.++..+.++++|++. |+.++ ..+.-+++++...+... -.+||+.-==..+|.+|-+..+
T Consensus 24 l~~lv~~li~~Gv~gl~~~------GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg~~~t~~ai~la~ 90 (291)
T 3tak_A 24 LEKLVEWHIEQGTNSIVAV------GTTGEASTLSMEEHTQVIKEIIRVAN-KRIPIIAGTGANSTREAIELTK 90 (291)
T ss_dssp HHHHHHHHHHHTCCEEEES------STTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEC------ccccccccCCHHHHHHHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHH
Confidence 4566666667899999987 66665 12222344444433332 1478876656667888766543
No 307
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=20.93 E-value=1.4e+02 Score=22.20 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
+..+.+.+..+|.||+.+-. .|..+ -.+++.|++..+ .+||+++-...+...+.+.
T Consensus 38 ~al~~l~~~~~dlvllD~~l--p~~~g------~~~~~~lr~~~~--~~~ii~lt~~~~~~~~~~~ 93 (225)
T 3c3w_A 38 EAMARVPAARPDVAVLDVRL--PDGNG------IELCRDLLSRMP--DLRCLILTSYTSDEAMLDA 93 (225)
T ss_dssp HHHHHHHHHCCSEEEECSEE--TTEEH------HHHHHHHHHHCT--TCEEEEGGGSSSHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEeCCC--CCCCH------HHHHHHHHHhCC--CCcEEEEECCCCHHHHHHH
Confidence 34445566789999998633 22222 356677776654 7899988655444444433
No 308
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=20.92 E-value=1.1e+02 Score=24.44 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
+.|.+.+.+ ++..|+|-.|-+..|..-+..+ .+++++..++. ++ ++.+||-++
T Consensus 159 ~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~-l~~i~~~~~~~----~~-~li~De~~~ 211 (396)
T 3jtx_A 159 RSISEEVWK-RTKLVFVCSPNNPSGSVLDLDG-WKEVFDLQDKY----GF-IIASDECYS 211 (396)
T ss_dssp GGSCHHHHH-TEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHH----CC-EEEEECTTT
T ss_pred HHHHHhhcc-CcEEEEEECCCCCCCCcCCHHH-HHHHHHHHHHc----CC-EEEEEcccc
Confidence 455555554 7888888889888887654433 56666655543 54 556888775
No 309
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=20.86 E-value=1.7e+02 Score=18.66 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
+..+++.+..++.+++.+-. .|..+ ..+++.|++ . ..+||+++-...+...+.+.
T Consensus 37 ~~~~~~~~~~~dlvi~d~~l--~~~~g------~~~~~~l~~-~--~~~~ii~~s~~~~~~~~~~~ 91 (122)
T 1zgz_A 37 GLREIMQNQSVDLILLDINL--PDENG------LMLTRALRE-R--STVGIILVTGRSDRIDRIVG 91 (122)
T ss_dssp HHHHHHHHSCCSEEEEESCC--SSSCH------HHHHHHHHT-T--CCCEEEEEESSCCHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEeCCC--CCCCh------HHHHHHHHh-c--CCCCEEEEECCCChhhHHHH
Confidence 44456677889999998643 23222 356666765 3 36898888655555444433
No 310
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=20.85 E-value=2.2e+02 Score=23.02 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|.+.+--|.-... + + +.+.++-+.+++.. ++||+++|=
T Consensus 85 i~la~~a~~~Gadavlv~~P~y~~~--s-~-~~l~~~f~~ia~a~---~lPiilYn~ 134 (289)
T 2yxg_A 85 IELSVFAEDVGADAVLSITPYYNKP--T-Q-EGLRKHFGKVAESI---NLPIVLYNV 134 (289)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCC--C-H-HHHHHHHHHHHHHC---SSCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCC--C-H-HHHHHHHHHHHHhc---CCCEEEEeC
Confidence 4667777888999999998875322 2 2 44555556676663 799999883
No 311
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=20.85 E-value=1.9e+02 Score=22.59 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=33.7
Q ss_pred HHHHHHHHHH----cCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQR----EETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e----~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+.+ .++..|++-.|-+..|..-+. ++.++..++ +++. +.+||.++
T Consensus 132 ~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~----~~i~~~~~~----~~~~-li~D~a~~ 187 (371)
T 2e7j_A 132 PENFAQTIEETKKRGEVVLALITYPDGNYGNLPDV----KKIAKVCSE----YDVP-LLVNGAYA 187 (371)
T ss_dssp HHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCH----HHHHHHHHT----TTCC-EEEECTTT
T ss_pred HHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCH----HHHHHHHHH----cCCe-EEEECccc
Confidence 5677777765 367788888888888887663 333333332 3554 46788764
No 312
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=20.78 E-value=3.1e+02 Score=21.68 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
++.+.+...++|+||+- |.. .+. ...+.|.+. ++||+++|..
T Consensus 117 ~~~~~l~~~~vdGiI~~-~~~----~~~------~~~~~l~~~----~iPvV~i~~~ 158 (355)
T 3e3m_A 117 QLVETMLRRRPEAMVLS-YDG----HTE------QTIRLLQRA----SIPIVEIWEK 158 (355)
T ss_dssp HHHHHHHHTCCSEEEEE-CSC----CCH------HHHHHHHHC----CSCEEEESSC
T ss_pred HHHHHHHhCCCCEEEEe-CCC----CCH------HHHHHHHhC----CCCEEEECCc
Confidence 44445556899999985 321 121 233445443 7899988643
No 313
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=20.71 E-value=2.4e+02 Score=23.28 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChh----HHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQ----SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~----~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
..++.+++.+.++++||+. |+.++. .+.-+++++...+... -.+||+.===..||.+|-+..+
T Consensus 45 l~~li~~li~~Gv~Gl~v~------GtTGE~~~Ls~~Er~~v~~~~v~~~~-grvpViaGvg~~st~~ai~la~ 111 (315)
T 3si9_A 45 FCNFVEWQITQGINGVSPV------GTTGESPTLTHEEHKRIIELCVEQVA-KRVPVVAGAGSNSTSEAVELAK 111 (315)
T ss_dssp HHHHHHHHHHTTCSEEECS------STTTTGGGSCHHHHHHHHHHHHHHHT-TSSCBEEECCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeC------ccccCccccCHHHHHHHHHHHHHHhC-CCCcEEEeCCCCCHHHHHHHHH
Confidence 4566666667899999987 665552 1112233333333332 1478877666678888776543
No 314
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=20.70 E-value=1.7e+02 Score=23.84 Aligned_cols=54 Identities=20% Similarity=0.147 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+. .++..|++-.|-+..|..-+ .+.++++++..++. ++ ++.+||-++
T Consensus 172 ~~~l~~~l~-~~~~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~----~~-~li~De~~~ 225 (429)
T 1yiz_A 172 NNELEALFN-EKTKMIIINTPHNPLGKVMD-RAELEVVANLCKKW----NV-LCVSDEVYE 225 (429)
T ss_dssp HHHHHHHCC-TTEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHH----TC-EEEEECTTT
T ss_pred HHHHHHHhc-cCceEEEECCCCCCCCccCC-HHHHHHHHHHHHHc----Cc-EEEEecccc
Confidence 456666664 46778888888888887654 23556666555543 54 556899876
No 315
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=20.66 E-value=2.1e+02 Score=23.46 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcC
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDE 156 (170)
-++.+.+++.++|++.|--|... .+ .+.+.++-+.+++..+ .++||+++|=
T Consensus 92 i~la~~A~~~Gadavlv~~P~~~---~s--~~~l~~~f~~va~a~~-~~lPiilYn~ 142 (313)
T 3dz1_A 92 RRLARLSMDAGAAGVMIAPPPSL---RT--DEQITTYFRQATEAIG-DDVPWVLQDY 142 (313)
T ss_dssp HHHHHHHHHHTCSEEEECCCTTC---CS--HHHHHHHHHHHHHHHC-TTSCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECCCCCC---CC--HHHHHHHHHHHHHhCC-CCCcEEEEeC
Confidence 46777788889999999877632 22 3445566666776651 1299999873
No 316
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=20.51 E-value=2.5e+02 Score=22.94 Aligned_cols=65 Identities=8% Similarity=0.056 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHcCCCEEEEeecCCCCCCCCh--------hHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 95 GEKLELQLLEIAQREETDEFIIGLPKSWDGSETP--------QSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 95 ~~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~--------~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
+.+..+++.+++.+.++++||+. |+.++ ..+.++..++....+ +||+.===..+|.+|-+.
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~------GtTGE~~~Ls~eEr~~vi~~~~~~~~gr-----vpViaGvg~~st~~ai~l 99 (306)
T 1o5k_A 31 DLESYERLVRYQLENGVNALIVL------GTTGESPTVNEDEREKLVSRTLEIVDGK-----IPVIVGAGTNSTEKTLKL 99 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEES------SGGGTGGGCCHHHHHHHHHHHHHHHTTS-----SCEEEECCCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeC------ccccchhhCCHHHHHHHHHHHHHHhCCC-----CeEEEcCCCccHHHHHHH
Q ss_pred HHcC
Q 030836 167 MINM 170 (170)
Q Consensus 167 L~e~ 170 (170)
.+.+
T Consensus 100 a~~A 103 (306)
T 1o5k_A 100 VKQA 103 (306)
T ss_dssp HHHH
T ss_pred HHHH
No 317
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=20.41 E-value=2.5e+02 Score=22.71 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=36.2
Q ss_pred HHHHHHHHHH-cCCCEEEEeecCCCCCCCChhH----HHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 99 ELQLLEIAQR-EETDEFIIGLPKSWDGSETPQS----NKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 99 ~~~L~~li~e-~~v~~IVVGlPl~~dGt~s~~~----~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
.+++.+++.+ .++++||+. |+.++.. +.-+++++...+... -.+||+.-==..+|.+|-+...
T Consensus 26 l~~lv~~li~~~Gv~gl~~~------GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~ 93 (293)
T 1f6k_A 26 LRQIIRHNIDKMKVDGLYVG------GSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVGSVNLKEAVELGK 93 (293)
T ss_dssp HHHHHHHHHHTSCCSEEEES------SGGGTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEECCCSCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCcEEEeC------ccccchhhCCHHHHHHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHH
Confidence 4566666666 899999987 5544421 111233333333332 1478886666678888766543
No 318
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=20.32 E-value=97 Score=24.78 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+.+.++..|++-.|-+..|..-+. +.+.+++ ++. ++ ++.+||.++
T Consensus 148 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l-~~i~~l~---~~~----~~-~li~Dea~~ 199 (393)
T 1vjo_A 148 LEELRTALETHRPAILALVHAETSTGARQPL-EGVGELC---REF----GT-LLLVDTVTS 199 (393)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCC-TTHHHHH---HHH----TC-EEEEECTTT
T ss_pred HHHHHHHHhhCCceEEEEeccCCCcceeccH-HHHHHHH---HHc----CC-EEEEECCcc
Confidence 5677777766578899999888888876552 2333333 332 43 567899876
No 319
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=20.31 E-value=1.8e+02 Score=18.62 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHH
Q 030836 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166 (170)
Q Consensus 101 ~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~ 166 (170)
+..+++.+..++.+++.+-. .|..+ ..+++.|++. + .+||+++-...+...+.+.
T Consensus 38 ~a~~~~~~~~~dlvi~D~~l--~~~~g------~~~~~~l~~~-~--~~~ii~~s~~~~~~~~~~~ 92 (123)
T 1xhf_A 38 EMHQILSEYDINLVIMDINL--PGKNG------LLLARELREQ-A--NVALMFLTGRDNEVDKILG 92 (123)
T ss_dssp HHHHHHHHSCCSEEEECSSC--SSSCH------HHHHHHHHHH-C--CCEEEEEESCCSHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEcCCC--CCCCH------HHHHHHHHhC-C--CCcEEEEECCCChHHHHHH
Confidence 34445567889999998643 23222 3456666655 3 6888888665555444433
No 320
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=20.23 E-value=1.6e+02 Score=19.45 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
.+..+.+.+..++.|++.+-.. |..+ ..+++.|++.....++||+++-..
T Consensus 36 ~~a~~~~~~~~~dlvi~D~~l~--~~~g------~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 36 KEALEQIDHHHPDLVILDMDII--GENS------PNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHHHHHCCSEEEEETTC--------------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHHHhcCCCCEEEEeCCCC--CCcH------HHHHHHHHcCcccCCCCEEEEecC
Confidence 3444556677999999996442 2222 356667766531126888876544
No 321
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=20.21 E-value=1.6e+02 Score=23.41 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=35.2
Q ss_pred HHHHHHHHHHc--CCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQRE--ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~--~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.++++ +...+++..|-|..|..-+.. .++++++..++. ++ ++.+||-++
T Consensus 160 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~-~l~~l~~~~~~~----~~-~li~De~~~ 216 (397)
T 3fsl_A 160 FNDLLATLKTLQAGSIVLLHPCCHNPTGADLTND-QWDAVIEILKAR----EL-IPFLDIAYQ 216 (397)
T ss_dssp HHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHH-HHHHHHHHHHHT----TC-EEEEEESCT
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHH-HHHHHHHHHHhC----CE-EEEEecCch
Confidence 56788887754 445677788888888754433 356666655543 54 556788754
No 322
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=20.21 E-value=2.6e+02 Score=22.57 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhH----HHHHHHHHHHHHhhccCCccEEEEcCcccHHHHHHHHH
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQS----NKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~----~~vr~F~~~L~~~~~~~~lpV~lvDER~TT~eA~~~L~ 168 (170)
.+++.++..+.++++||+. |+.++.. +.-+++.+...+... -.+||+.-==..+|.+|-+..+
T Consensus 24 l~~lv~~li~~Gv~gl~~~------GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pvi~Gvg~~~t~~ai~la~ 90 (291)
T 3a5f_A 24 LSELIEWHIKSKTDAIIVC------GTTGEATTMTETERKETIKFVIDKVN-KRIPVIAGTGSNNTAASIAMSK 90 (291)
T ss_dssp HHHHHHHHHHTTCCEEEES------SGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEC------ccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCCcccHHHHHHHHH
Confidence 4566666667899999987 5544421 111233333333332 1478876656678888766543
No 323
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=20.17 E-value=1.9e+02 Score=18.96 Aligned_cols=57 Identities=9% Similarity=0.008 Sum_probs=35.6
Q ss_pred HHHHHHHH-----cCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHH----hhccCCccEEEEcCcccHHHHHHHH
Q 030836 101 QLLEIAQR-----EETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAV----RAAERGWRVYLLDEHRTSAEAVDRM 167 (170)
Q Consensus 101 ~L~~li~e-----~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~----~~~~~~lpV~lvDER~TT~eA~~~L 167 (170)
+..+.+.+ ..++.|++.+-+ .|..+ ..+++.|++ .. ..+||+++-...+...+.+.+
T Consensus 46 ~a~~~l~~~~~~~~~~dlvi~D~~l--~~~~g------~~~~~~l~~~~~~~~--~~~~ii~~t~~~~~~~~~~~~ 111 (146)
T 3ilh_A 46 AAINKLNELYAAGRWPSIICIDINM--PGING------WELIDLFKQHFQPMK--NKSIVCLLSSSLDPRDQAKAE 111 (146)
T ss_dssp HHHHHHHHHHTSSCCCSEEEEESSC--SSSCH------HHHHHHHHHHCGGGT--TTCEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCEEEEcCCC--CCCCH------HHHHHHHHHhhhhcc--CCCeEEEEeCCCChHHHHHHH
Confidence 33445555 889999998643 23222 467777776 33 378988887666665555444
No 324
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=20.15 E-value=2.9e+02 Score=20.95 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 100 ~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
..+..++. .++|+||+- |. ... ......+.+.+. ++||+++|-+
T Consensus 48 ~~i~~l~~-~~vdgiii~-~~-----~~~---~~~~~~~~~~~~----~iPvV~~~~~ 91 (306)
T 8abp_A 48 NAIDSLAA-SGAKGFVIC-TP-----DPK---LGSAIVAKARGY----DMKVIAVDDQ 91 (306)
T ss_dssp HHHHHHHH-TTCCEEEEE-CS-----CGG---GHHHHHHHHHHT----TCEEEEESSC
T ss_pred HHHHHHHH-cCCCEEEEe-CC-----Cch---hhHHHHHHHHHC----CCcEEEeCCC
Confidence 34555554 589999987 21 111 122334455543 8999999943
No 325
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=20.14 E-value=1.5e+02 Score=24.03 Aligned_cols=54 Identities=9% Similarity=-0.016 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCccc
Q 030836 99 ELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159 (170)
Q Consensus 99 ~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER~T 159 (170)
.+.|.+.+++ ++..|++-.|-+..|..-+ ...++++++..++. ++ .+.+||.++
T Consensus 164 ~~~l~~~l~~-~~~~v~i~~p~nptG~~~~-~~~l~~i~~~a~~~----~~-~li~De~~~ 217 (406)
T 1xi9_A 164 IDDIRKKITD-RTKAIAVINPNNPTGALYD-KKTLEEILNIAGEY----EI-PVISDEIYD 217 (406)
T ss_dssp HHHHHHHCCT-TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHH----TC-CEEEECTTT
T ss_pred HHHHHHhhCc-CceEEEEECCCCCCCCCcC-HHHHHHHHHHHHHc----CC-EEEEEcCcc
Confidence 4667776654 5777888888888886543 23455666555443 55 456888764
No 326
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri}
Probab=20.05 E-value=1.4e+02 Score=23.96 Aligned_cols=37 Identities=5% Similarity=0.167 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHH
Q 030836 97 KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGR 139 (170)
Q Consensus 97 ~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~ 139 (170)
+..++|.++.+ .++|.++++.|... ...+.++.|++.
T Consensus 287 ~v~~~l~~~~~-~G~d~~~l~~~~~~-----~~~~~l~~~a~~ 323 (327)
T 1z69_A 287 DCMKRIKDLEA-IGVTQIVAGSPIGP-----AKEKAIKLIGKE 323 (327)
T ss_dssp HHHHHHHHHHH-TTCCEEEEEEEESS-----SHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCEEEEcCCCCc-----cHHHHHHHHHHH
Confidence 34567888765 79999999877432 134455556553
No 327
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=20.04 E-value=2.8e+02 Score=20.68 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=23.5
Q ss_pred HHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHHHHHHhhccCCccEEEEcCc
Q 030836 102 LLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157 (170)
Q Consensus 102 L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~~L~~~~~~~~lpV~lvDER 157 (170)
+.+.+...++|+||+- |.. .+. ...+.+.+. ++||+++|..
T Consensus 51 ~~~~l~~~~vdgii~~-~~~----~~~------~~~~~l~~~----~iPvV~~~~~ 91 (275)
T 3d8u_A 51 LLSTFLESRPAGVVLF-GSE----HSQ------RTHQLLEAS----NTPVLEIAEL 91 (275)
T ss_dssp HHHHHHTSCCCCEEEE-SSC----CCH------HHHHHHHHH----TCCEEEESSS
T ss_pred HHHHHHhcCCCEEEEe-CCC----CCH------HHHHHHHhC----CCCEEEEeec
Confidence 3344446799998875 221 111 233445443 7899998854
Done!