Query 030837
Match_columns 170
No_of_seqs 151 out of 1096
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02364 L-ascorbate peroxidas 100.0 9.6E-57 2.1E-61 370.3 15.9 169 1-170 1-170 (250)
2 PLN02879 L-ascorbate peroxidas 100.0 1.7E-56 3.7E-61 368.5 16.3 169 1-170 2-170 (251)
3 PLN02608 L-ascorbate peroxidas 100.0 2.8E-55 6E-60 367.0 16.2 165 5-170 3-167 (289)
4 cd00691 ascorbate_peroxidase A 100.0 1.1E-52 2.4E-57 346.9 15.8 154 9-170 13-169 (253)
5 PLN03030 cationic peroxidase; 100.0 1.1E-52 2.4E-57 355.8 9.7 154 2-170 31-194 (324)
6 cd00693 secretory_peroxidase H 100.0 3.1E-51 6.7E-56 345.3 10.9 154 2-170 8-174 (298)
7 PF00141 peroxidase: Peroxidas 100.0 1.1E-49 2.3E-54 325.3 7.8 146 12-170 1-154 (230)
8 cd00314 plant_peroxidase_like 100.0 1.9E-44 4E-49 297.7 13.6 153 11-170 2-167 (255)
9 cd00692 ligninase Ligninase an 100.0 3.8E-44 8.3E-49 304.6 14.5 148 20-169 21-180 (328)
10 cd00649 catalase_peroxidase_1 100.0 2.3E-44 4.9E-49 311.2 11.4 155 15-170 43-249 (409)
11 cd08201 plant_peroxidase_like_ 100.0 3.5E-44 7.5E-49 295.8 8.9 137 28-170 37-176 (264)
12 TIGR00198 cat_per_HPI catalase 100.0 3.3E-42 7.2E-47 314.1 10.7 155 15-170 53-258 (716)
13 PRK15061 catalase/hydroperoxid 100.0 1.7E-40 3.8E-45 301.7 11.4 157 13-170 53-262 (726)
14 cd08200 catalase_peroxidase_2 100.0 7.5E-37 1.6E-41 255.2 13.4 152 14-169 14-198 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 5.8E-33 1.2E-37 253.6 14.3 155 11-169 429-611 (716)
16 PRK15061 catalase/hydroperoxid 100.0 6.8E-32 1.5E-36 245.8 13.9 152 14-169 439-623 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.5E-30 3.2E-35 229.2 8.7 154 15-169 68-273 (730)
18 COG0376 KatG Catalase (peroxid 99.6 2.4E-15 5.2E-20 133.5 7.0 148 12-163 447-620 (730)
19 PRK12346 transaldolase A; Prov 45.1 21 0.00045 30.8 2.9 86 77-165 138-241 (316)
20 PRK12309 transaldolase/EF-hand 44.7 26 0.00056 31.1 3.5 86 77-165 143-246 (391)
21 PTZ00411 transaldolase-like pr 44.1 24 0.00051 30.7 3.1 58 107-165 179-252 (333)
22 cd00957 Transaldolase_TalAB Tr 39.6 35 0.00076 29.4 3.4 86 77-165 137-240 (313)
23 PRK05269 transaldolase B; Prov 37.4 22 0.00047 30.7 1.8 58 107-165 169-242 (318)
24 KOG0400 40S ribosomal protein 35.2 16 0.00034 27.8 0.5 39 130-169 21-64 (151)
25 cd00439 Transaldolase Transald 34.6 17 0.00036 30.2 0.6 87 76-165 127-231 (252)
26 TIGR00874 talAB transaldolase. 30.1 43 0.00092 28.9 2.4 59 106-165 166-240 (317)
27 PF04225 OapA: Opacity-associa 27.2 57 0.0012 22.4 2.2 25 138-163 10-34 (85)
28 PF00043 GST_C: Glutathione S- 26.4 1.7E+02 0.0037 19.0 4.6 38 72-109 31-73 (95)
29 TIGR00875 fsa_talC_mipB fructo 25.5 40 0.00086 27.3 1.3 80 76-165 89-182 (213)
30 COG1913 Predicted Zn-dependent 23.7 30 0.00064 27.5 0.3 15 155-170 127-141 (181)
31 PF10937 DUF2638: Protein of u 22.9 88 0.0019 22.9 2.6 30 130-160 79-108 (112)
32 cd02642 R3H_encore_like R3H do 22.8 98 0.0021 19.8 2.6 34 14-47 3-43 (63)
33 PF09533 DUF2380: Predicted li 22.1 66 0.0014 25.7 1.9 24 139-163 108-131 (188)
34 PF09388 SpoOE-like: Spo0E lik 21.5 1.3E+02 0.0028 17.9 2.8 20 140-160 12-31 (45)
35 COG2877 KdsA 3-deoxy-D-manno-o 20.2 70 0.0015 26.9 1.8 30 72-101 71-115 (279)
No 1
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=9.6e-57 Score=370.27 Aligned_cols=169 Identities=77% Similarity=1.275 Sum_probs=165.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCccccHHHhhccCcCchHHHHHH
Q 030837 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (170)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (170)
|.|.||.+.+.+++++++++++|++++.|+.++|.+|||+||||++||.....|||||||++.+|+++++|.+|.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhCCCCcHHHHHHHHhhhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh-cCCChhhHHHh
Q 030837 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQ-MGLSDKDIVAL 159 (170)
Q Consensus 81 i~~iK~~~~~VS~ADiialAa~~av~~~GgP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~-~Gl~~~e~VaL 159 (170)
|++||+++++|||||||+||+++||+++|||.|+|++||+|++++.++++||.|+.+++++++.| +. +|||++|||+|
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F-~~~~Gl~~~d~VaL 159 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVF-AKQMGLSDKDIVAL 159 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHH-HHhcCCCHHHheee
Confidence 99999999999999999999999999999999999999999999988889999999999999999 75 69999999999
Q ss_pred hccccccccCC
Q 030837 160 SGGHTLVSAKL 170 (170)
Q Consensus 160 ~GaHtiG~~hc 170 (170)
+||||||++||
T Consensus 160 sGaHTiG~~hc 170 (250)
T PLN02364 160 SGAHTLGRCHK 170 (250)
T ss_pred ecceeeccccC
Confidence 99999999999
No 2
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.7e-56 Score=368.47 Aligned_cols=169 Identities=73% Similarity=1.238 Sum_probs=165.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCccccHHHhhccCcCchHHHHHH
Q 030837 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (170)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (170)
|.|.||.+.+.++++++.++++|.+++.++.++|.+|||+||||+|||..+++||+||||+|.+|+++++|.||+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHhHHhhCCCCcHHHHHHHHhhhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHhh
Q 030837 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (170)
Q Consensus 81 i~~iK~~~~~VS~ADiialAa~~av~~~GgP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~ 160 (170)
|++||+++++|||||||+||+++||+.+|||.|+|++||+|+..+.++++||.|+.+++++++.| +++||+++|||||+
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F-~~~Gl~~~dlVALs 160 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVF-GRMGLNDKDIVALS 160 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHeeee
Confidence 99999999999999999999999999999999999999999999988899999999999999999 99999999999999
Q ss_pred ccccccccCC
Q 030837 161 GGHTLVSAKL 170 (170)
Q Consensus 161 GaHtiG~~hc 170 (170)
||||||++||
T Consensus 161 GaHTiG~ah~ 170 (251)
T PLN02879 161 GGHTLGRCHK 170 (251)
T ss_pred cccccccccc
Confidence 9999999999
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=2.8e-55 Score=366.98 Aligned_cols=165 Identities=65% Similarity=1.059 Sum_probs=161.0
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCccccHHHhhccCcCchHHHHHHHHhH
Q 030837 5 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (170)
Q Consensus 5 cp~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (170)
.|.++..|..+|+.+|+||+++++|+.++|.+|||+||||++||.+++.|||||||++.+|+++++|.+|++++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 58888889999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HhhCCCCcHHHHHHHHhhhHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHhhcccc
Q 030837 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHT 164 (170)
Q Consensus 85 K~~~~~VS~ADiialAa~~av~~~GgP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHt 164 (170)
|+++|+|||||||+||+++||+++|||.|+|++||+|+.++.++++||.|+.+++++++.| +++||+++|||+|+||||
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F-~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVF-YRMGLSDKDIVALSGGHT 161 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHH-HHcCCCHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999988889999999999999999 899999999999999999
Q ss_pred ccccCC
Q 030837 165 LVSAKL 170 (170)
Q Consensus 165 iG~~hc 170 (170)
||++||
T Consensus 162 iG~ahc 167 (289)
T PLN02608 162 LGRAHP 167 (289)
T ss_pred cccccc
Confidence 999999
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.1e-52 Score=346.95 Aligned_cols=154 Identities=58% Similarity=1.011 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCccccHHHhhccCcCchHHHHHHHHhHHhhC
Q 030837 9 SEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF 88 (170)
Q Consensus 9 ~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~iK~~~ 88 (170)
.++|+++|+++ ++++.++|.+|||+|||||+||++++.||+||++++.+|+++++|.+|++++++|++||+++
T Consensus 13 ~~~V~~~v~~~-------~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~ 85 (253)
T cd00691 13 LEAARNDIAKL-------IDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY 85 (253)
T ss_pred HHHHHHHHHHH-------HHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc
Confidence 34555555544 44999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHhhhHhhhcCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHhhccccc
Q 030837 89 PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTL 165 (170)
Q Consensus 89 ~~VS~ADiialAa~~av~~~GgP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHti 165 (170)
|+|||||||++|+++||+.+|||.|+|++||+|+.++. ++++||.|+.++++++++| +++||+++|||+|+|||||
T Consensus 86 ~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~d~VaLsGaHTi 164 (253)
T cd00691 86 PDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVF-YRMGFNDQEIVALSGAHTL 164 (253)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHH-HhcCCCHHHHHHhccccee
Confidence 99999999999999999999999999999999999985 6788999999999999999 8999999999999999999
Q ss_pred cccCC
Q 030837 166 VSAKL 170 (170)
Q Consensus 166 G~~hc 170 (170)
|++||
T Consensus 165 G~a~c 169 (253)
T cd00691 165 GRCHK 169 (253)
T ss_pred ecccc
Confidence 99999
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.1e-52 Score=355.84 Aligned_cols=154 Identities=28% Similarity=0.400 Sum_probs=144.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCcccc---HHHhhccCcCchHHHH
Q 030837 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL---AAEQAHSANNGLDIAV 78 (170)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dgsi~~---~~E~~~~~N~gl~~~~ 78 (170)
++|||++|+||+++|+++ +.+|+.++|++|||+|||||+ +||||||++ .+|++.++|.+| ++|
T Consensus 31 ~~sCP~aE~iV~~~v~~~------~~~d~~~aa~llRL~FHDCfv-------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf 96 (324)
T PLN03030 31 STTCPQAESIVRKTVQSH------FQSNPAIAPGLLRMHFHDCFV-------RGCDASILIDGSNTEKTALPNLLL-RGY 96 (324)
T ss_pred hCcCCCHHHHHHHHHHHH------HhhCcccchhhhhhhhhhhee-------cCCceEEeeCCCcccccCCCCcCc-chH
Confidence 579999999999999998 999999999999999999998 788888887 369999999988 799
Q ss_pred HHHHhHHhhC----C-CCcHHHHHHHHhhhHhhhcCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHhcCC
Q 030837 79 RLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP--PQEGRLPDAKQGNDHLRQVFGAQMGL 151 (170)
Q Consensus 79 ~~i~~iK~~~----~-~VS~ADiialAa~~av~~~GgP~~~v~~GR~D~~~s--~~~~~lP~p~~~~~~l~~~F~~~~Gl 151 (170)
++|+.||+++ | +|||||||++|+|+||.++|||.|+|++||+|+.+| ...++||.|+.+++++++.| +++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F-~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKF-AAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHH-HHcCC
Confidence 9999999975 6 899999999999999999999999999999999887 33458999999999999999 89999
Q ss_pred ChhhHHHhhccccccccCC
Q 030837 152 SDKDIVALSGGHTLVSAKL 170 (170)
Q Consensus 152 ~~~e~VaL~GaHtiG~~hc 170 (170)
+.+|||+||||||||++||
T Consensus 176 ~~~DlVaLsGAHTiG~ahC 194 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTAC 194 (324)
T ss_pred CHHHheeeeeccccceeee
Confidence 9999999999999999999
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.1e-51 Score=345.26 Aligned_cols=154 Identities=29% Similarity=0.413 Sum_probs=144.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCcccc------HHHhhccCcCchH
Q 030837 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL------AAEQAHSANNGLD 75 (170)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dgsi~~------~~E~~~~~N~gl~ 75 (170)
.++||++|++|+++|+++ +..|+.++|++|||+|||||+ +||||||++ .+|+++++|.++
T Consensus 8 ~~sCP~~e~iV~~~v~~~------~~~~~~~a~~~lRl~FHDc~v-------~GcDaSill~~~~~~~~E~~~~~N~~l- 73 (298)
T cd00693 8 SKSCPNAESIVRSVVRAA------VKADPRLAAALLRLHFHDCFV-------RGCDASVLLDSTANNTSEKDAPPNLSL- 73 (298)
T ss_pred cCCCCChHHHHHHHHHHH------HHhCCCcCchhhhhhhHhhhc-------cCcceeEEecCCCCCchhccCCCCCCc-
Confidence 579999999999999988 899999999999999999998 789999876 469999999998
Q ss_pred HHHHHHHhHHhhC----C-CCcHHHHHHHHhhhHhhhcCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHh
Q 030837 76 IAVRLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP--QEGRLPDAKQGNDHLRQVFGAQ 148 (170)
Q Consensus 76 ~~~~~i~~iK~~~----~-~VS~ADiialAa~~av~~~GgP~~~v~~GR~D~~~s~--~~~~lP~p~~~~~~l~~~F~~~ 148 (170)
++|++|++||+++ | +|||||||+||+++||+.+|||.|+|++||+|+..+. +.++||.|+.+++++++.| ++
T Consensus 74 ~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~ 152 (298)
T cd00693 74 RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLF-AS 152 (298)
T ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHH-HH
Confidence 7999999999975 5 8999999999999999999999999999999998763 3368999999999999999 89
Q ss_pred cCCChhhHHHhhccccccccCC
Q 030837 149 MGLSDKDIVALSGGHTLVSAKL 170 (170)
Q Consensus 149 ~Gl~~~e~VaL~GaHtiG~~hc 170 (170)
+||+++|||+|+||||||++||
T Consensus 153 ~G~~~~d~VaL~GaHTiG~~hc 174 (298)
T cd00693 153 KGLTVTDLVALSGAHTIGRAHC 174 (298)
T ss_pred cCCCHHHheeecccceeeeeec
Confidence 9999999999999999999999
No 7
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.1e-49 Score=325.33 Aligned_cols=146 Identities=37% Similarity=0.603 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCcccc-HHHhhccCcCchHHHHHHHHhHHhhC--
Q 030837 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL-AAEQAHSANNGLDIAVRLLEPFKEQF-- 88 (170)
Q Consensus 12 v~~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dgsi~~-~~E~~~~~N~gl~~~~~~i~~iK~~~-- 88 (170)
||++|+++ +..++.++|++|||+||||++| |||||||++ .+|+++++|.+|.+++++|++||+++
T Consensus 1 Vr~~v~~~------~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~ 68 (230)
T PF00141_consen 1 VRSDVRAA------FKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEA 68 (230)
T ss_dssp HHHHHHHH------HHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHH------HHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcc
Confidence 56777776 7779999999999999999998 999999965 88999999999988999999999987
Q ss_pred --C-CCcHHHHHHHHhhhHhhhcCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHhcCCChhhHHHhhccc
Q 030837 89 --P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGH 163 (170)
Q Consensus 89 --~-~VS~ADiialAa~~av~~~GgP~~~v~~GR~D~~~s~~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaH 163 (170)
| +|||||||++|+++||+.+|||.|+|++||+|+..+.+.+ +||.|..++++++++| +++|||++|||||+|||
T Consensus 69 ~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~e~VaLsGaH 147 (230)
T PF00141_consen 69 ACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFF-ARKGLSAEEMVALSGAH 147 (230)
T ss_dssp HSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHH-HHTT--HHHHHHHHGGG
T ss_pred cccCCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhh-hccccchhhhcceeccc
Confidence 4 6999999999999999999999999999999999996543 5999999999999999 99999999999999999
Q ss_pred cccccCC
Q 030837 164 TLVSAKL 170 (170)
Q Consensus 164 tiG~~hc 170 (170)
|||++||
T Consensus 148 TiG~~~c 154 (230)
T PF00141_consen 148 TIGRAHC 154 (230)
T ss_dssp GSTEESG
T ss_pred cccccee
Confidence 9999998
No 8
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.9e-44 Score=297.73 Aligned_cols=153 Identities=44% Similarity=0.673 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCC-CCCCCCCccccHHHhhccCcCchHHHHHHHHhHHhhCC
Q 030837 11 DYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP 89 (170)
Q Consensus 11 ~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~-~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~iK~~~~ 89 (170)
.|+..|+.. +.+++.+++++|||+||||++|+.+. ..|||||||++.+|+++|+|.+|.+++++|++||++++
T Consensus 2 ~v~~~l~~~------~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDL------ITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHH------HHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcC
Confidence 355666555 56689999999999999999998887 68999999999999999999999899999999999995
Q ss_pred ---CCcHHHHHHHHhhhHhhhc--CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHh
Q 030837 90 ---TISYADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL 159 (170)
Q Consensus 90 ---~VS~ADiialAa~~av~~~--GgP~~~v~~GR~D~~-----~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL 159 (170)
+|||||||++|+++||+.+ |||.|+|++||+|+. .+.|.+++|.|..+++++++.| .++||+++|||||
T Consensus 76 ~~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F-~~~Gl~~~e~VAL 154 (255)
T cd00314 76 GGNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKF-KRMGLSPSELVAL 154 (255)
T ss_pred CCCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHH-HHcCCCHHHHHhh
Confidence 8999999999999999999 999999999999998 4567788999999999999999 8999999999999
Q ss_pred h-ccccc-cccCC
Q 030837 160 S-GGHTL-VSAKL 170 (170)
Q Consensus 160 ~-GaHti-G~~hc 170 (170)
+ ||||| |++||
T Consensus 155 ~~GaHti~G~~~~ 167 (255)
T cd00314 155 SAGAHTLGGKNHG 167 (255)
T ss_pred ccCCeeccCcccC
Confidence 9 99999 99998
No 9
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.8e-44 Score=304.57 Aligned_cols=148 Identities=32% Similarity=0.564 Sum_probs=131.8
Q ss_pred HHHhhh-hhhcCCc---hHHHHHHHhhhccccCC-----CCCCCCCCCccccH--HHhhccCcCchHHHHHHHHhHHhhC
Q 030837 20 KRKLRG-FIAEKNC---APLMLRIAWHSAGTYDV-----KTKTGGPFGTMRLA--AEQAHSANNGLDIAVRLLEPFKEQF 88 (170)
Q Consensus 20 ~~~l~~-~~~~~~~---a~~~lRL~fHDc~~~d~-----s~~~gG~dgsi~~~--~E~~~~~N~gl~~~~~~i~~iK~~~ 88 (170)
++||++ +..+..+ ++.+|||+||||++||. ..+.|||||||++. .|+++++|.||+..++.|+++++++
T Consensus 21 ~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~e~~ 100 (328)
T cd00692 21 LDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFHQKH 100 (328)
T ss_pred HHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHHHhc
Confidence 334443 4446555 55699999999999994 56789999999763 5999999999998888888888888
Q ss_pred CCCcHHHHHHHHhhhHhh-hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHhhccccccc
Q 030837 89 PTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVS 167 (170)
Q Consensus 89 ~~VS~ADiialAa~~av~-~~GgP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~GaHtiG~ 167 (170)
+ |||||||+||+++||+ .+|||.|+|++||+|+..+.++++||.|+.++++++++| +++||+++|||+|+||||||+
T Consensus 101 c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F-~~~Gf~~~E~VaLsGAHTiG~ 178 (328)
T cd00692 101 N-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARF-ADAGFSPDELVALLAAHSVAA 178 (328)
T ss_pred C-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHhhhcccccccc
Confidence 7 9999999999999999 579999999999999999988899999999999999999 899999999999999999999
Q ss_pred cC
Q 030837 168 AK 169 (170)
Q Consensus 168 ~h 169 (170)
+|
T Consensus 179 a~ 180 (328)
T cd00692 179 QD 180 (328)
T ss_pred cC
Confidence 87
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=2.3e-44 Score=311.16 Aligned_cols=155 Identities=39% Similarity=0.642 Sum_probs=144.9
Q ss_pred HHHHHHHHhhhhhhcC---------CchHHHHHHHhhhccccCCCCCCCCCC-CccccHHHhhccCcCchHHHHHHHHhH
Q 030837 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (170)
Q Consensus 15 ~v~~~~~~l~~~~~~~---------~~a~~~lRL~fHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (170)
.++++|++|++++++. +++|.+|||+|||++|||.++++||+| |+|||.+|.+|+.|.+|++++++|++|
T Consensus 43 d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~pi 122 (409)
T cd00649 43 DLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWPI 122 (409)
T ss_pred cHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHHHH
Confidence 3788899999998864 799999999999999999999999998 699999999999999999999999999
Q ss_pred HhhCC-CCcHHHHHHHHhhhHhhhcCCCCCCCCCCCCCCCCCC-------------------------------------
Q 030837 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------------- 126 (170)
Q Consensus 85 K~~~~-~VS~ADiialAa~~av~~~GgP~~~v~~GR~D~~~s~------------------------------------- 126 (170)
|++|| .||+||+|+||+.+|||.+|||.|+|.+||.|...+.
T Consensus 123 k~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv 202 (409)
T cd00649 123 KQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYV 202 (409)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhcccccc
Confidence 99997 7999999999999999999999999999999996532
Q ss_pred -CCC--CCCCCCCCHHHHHHHHHHhcCCChhhHHHh-hccccccccCC
Q 030837 127 -QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLVSAKL 170 (170)
Q Consensus 127 -~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL-~GaHtiG~~hc 170 (170)
|++ .+|+|..++.+|++.| .+||||++||||| +||||||++||
T Consensus 203 ~Pegp~gLPdP~~sa~~LR~~F-~RmGlnd~E~VAL~sGAHTiGkaHc 249 (409)
T cd00649 203 NPEGPDGNPDPLAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTHG 249 (409)
T ss_pred CCCCCCCCCCCccCHHHHHHHH-HHcCCCHHHHeeeccCCcceeecCc
Confidence 233 6999999999999999 8999999999999 59999999999
No 11
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3.5e-44 Score=295.84 Aligned_cols=137 Identities=31% Similarity=0.489 Sum_probs=124.6
Q ss_pred hcCCchHHHHHHHhhhccccCCCCCCCCCCCccccHHHhhccCcCchH--HHHHHHHhHHhhCCCCcHHHHHHHHhhhHh
Q 030837 28 AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVGV 105 (170)
Q Consensus 28 ~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dgsi~~~~E~~~~~N~gl~--~~~~~i~~iK~~~~~VS~ADiialAa~~av 105 (170)
.++..++++|||+||||++||...+.|||||||++ |..+++|.|+. ..++.++.|+. ++||||||||||+++||
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV 112 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSV 112 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998 67888998875 34555555533 48999999999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCChhhHHHhhc-cccccccCC
Q 030837 106 EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSG-GHTLVSAKL 170 (170)
Q Consensus 106 ~~~GgP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~G-aHtiG~~hc 170 (170)
+.+|||.|+|++||+|++.+.+.+ ||.|+.+++++++.| +++||+++|||+|+| |||||++||
T Consensus 113 ~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~F-a~~Gfs~~DmVaLsggaHTiG~ahc 176 (264)
T cd08201 113 ASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESF-RRQGFSTSEMIALVACGHTLGGVHS 176 (264)
T ss_pred HHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHH-HHcCCChHHHheeecCCeeeeeccc
Confidence 999999999999999999998876 999999999999999 899999999999995 999999999
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.3e-42 Score=314.05 Aligned_cols=155 Identities=37% Similarity=0.607 Sum_probs=143.8
Q ss_pred HHHHHHHHhhhhhhcC---------CchHHHHHHHhhhccccCCCCCCCCCC-CccccHHHhhccCcCchHHHHHHHHhH
Q 030837 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (170)
Q Consensus 15 ~v~~~~~~l~~~~~~~---------~~a~~~lRL~fHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (170)
.++++|+||++++++. +++|.+|||+||+++|||.++++||+| |+|||.||.+|+.|.+|++++++|++|
T Consensus 53 d~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pI 132 (716)
T TIGR00198 53 DLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPI 132 (716)
T ss_pred cHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHHH
Confidence 3677899999999874 799999999999999999999999996 699999999999999999999999999
Q ss_pred HhhCC-CCcHHHHHHHHhhhHhhhcCCCCCCCCCCCCCCCCCC-------------------------------------
Q 030837 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------------- 126 (170)
Q Consensus 85 K~~~~-~VS~ADiialAa~~av~~~GgP~~~v~~GR~D~~~s~------------------------------------- 126 (170)
|++|| +|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 133 k~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvn 212 (716)
T TIGR00198 133 KKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVN 212 (716)
T ss_pred HHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccccC
Confidence 99998 8999999999999999999999999999999995431
Q ss_pred CCC--CCCCCCCCHHHHHHHHHHhcCCChhhHHHhh-ccccccccCC
Q 030837 127 QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSAKL 170 (170)
Q Consensus 127 ~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~hc 170 (170)
+++ .+|+|..+..+|++.| .+||||++|||||+ ||||||++||
T Consensus 213 peg~~~lPdP~~sa~~Lrd~F-~rmGLnd~EmVALiaGaHTiGkaHc 258 (716)
T TIGR00198 213 PEGPDGHPDPLCTAQDIRTTF-ARMGMNDEETVALIAGGHTVGKCHG 258 (716)
T ss_pred cccccCCCCCCCCHHHHHHHH-HHcCCChHHHeeeecCceeccccCC
Confidence 122 6999999999999999 89999999999995 9999999999
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.7e-40 Score=301.70 Aligned_cols=157 Identities=39% Similarity=0.623 Sum_probs=144.2
Q ss_pred HHHHHHHHHHhhhhhhcC---------CchHHHHHHHhhhccccCCCCCCCCCC-CccccHHHhhccCcCchHHHHHHHH
Q 030837 13 KKAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLE 82 (170)
Q Consensus 13 ~~~v~~~~~~l~~~~~~~---------~~a~~~lRL~fHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~ 82 (170)
.-.++++|+||++++++. +++|.+|||+||+++|||.++++||+| |+|||.+|.+|+.|.+|++++++|+
T Consensus 53 ~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~ 132 (726)
T PRK15061 53 KLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKARRLLW 132 (726)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHHHHHHH
Confidence 334788899999999875 799999999999999999999999997 6999999999999999999999999
Q ss_pred hHHhhCC-CCcHHHHHHHHhhhHhhhcCCCCCCCCCCCCCCCCCCC----------------------------------
Q 030837 83 PFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ---------------------------------- 127 (170)
Q Consensus 83 ~iK~~~~-~VS~ADiialAa~~av~~~GgP~~~v~~GR~D~~~s~~---------------------------------- 127 (170)
+||++|| .||+||+|+||+..|||.+|||.|+|.+||.|...+..
T Consensus 133 pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgl 212 (726)
T PRK15061 133 PIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGL 212 (726)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhccc
Confidence 9999997 79999999999999999999999999999999865421
Q ss_pred -----C--CCCCCCCCCHHHHHHHHHHhcCCChhhHHHhh-ccccccccCC
Q 030837 128 -----E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSAKL 170 (170)
Q Consensus 128 -----~--~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~hc 170 (170)
+ ..+|+|..++.++++.| .+||||++|||||+ ||||||++||
T Consensus 213 iyvnpegp~glPdP~~sa~~lR~tF-~RMGmnDeEtVALiaGgHT~GkaHc 262 (726)
T PRK15061 213 IYVNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHG 262 (726)
T ss_pred eecCCCCCCCCCCcccCHHHHHHHH-HHcCCCHHHheeeccCCceeeeCCC
Confidence 1 12799999999999999 89999999999995 9999999999
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=7.5e-37 Score=255.23 Aligned_cols=152 Identities=28% Similarity=0.434 Sum_probs=132.7
Q ss_pred HHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCc-cccHHHhhccCcCc--hHHHHHHHHhHHhhCC-
Q 030837 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNG--LDIAVRLLEPFKEQFP- 89 (170)
Q Consensus 14 ~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~g--l~~~~~~i~~iK~~~~- 89 (170)
+.|...|++ ++....+++.+|||+||++.|||.++++||+||+ |||.||++|+.|.+ |.+++.+|++||++||
T Consensus 14 ~di~~lk~~---i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 14 ADIAALKAK---ILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHH---HHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 445555555 4677789999999999999999999999999995 99999999999999 9999999999999997
Q ss_pred ------CCcHHHHHHHHhhhHhhhcCC-----CCCCCCCCCCCCCCCCC--C---CCCCCCCC------------CHHHH
Q 030837 90 ------TISYADLYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEPPQ--E---GRLPDAKQ------------GNDHL 141 (170)
Q Consensus 90 ------~VS~ADiialAa~~av~~~Gg-----P~~~v~~GR~D~~~s~~--~---~~lP~p~~------------~~~~l 141 (170)
.||+||+|+||+..|||.+|| |.|+|.+||.|++.+.. + .++|.+.. ...+|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 799999999999999999999 99999999999987632 1 24454422 34789
Q ss_pred HHHHHHhcCCChhhHHHhhccc-cccccC
Q 030837 142 RQVFGAQMGLSDKDIVALSGGH-TLVSAK 169 (170)
Q Consensus 142 ~~~F~~~~Gl~~~e~VaL~GaH-tiG~~h 169 (170)
++.| .+||||++|||||+||| ++|++|
T Consensus 171 rd~f-~rlglsd~EmvaL~Gg~r~lG~~~ 198 (297)
T cd08200 171 VDKA-QLLTLTAPEMTVLVGGLRVLGANY 198 (297)
T ss_pred HHHH-HhCCCChHHHhheecchhhcccCC
Confidence 9999 99999999999999997 799877
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=5.8e-33 Score=253.64 Aligned_cols=155 Identities=26% Similarity=0.412 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCc-cccHHHhhccCc--CchHHHHHHHHhHHhh
Q 030837 11 DYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQ 87 (170)
Q Consensus 11 ~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N--~gl~~~~~~i~~iK~~ 87 (170)
.|++.|...|.+ ++.....++.||||+||++.|||.++++||+||+ |||.||++|+.| .+|.+++++|++||++
T Consensus 429 ~v~~di~~lk~~---i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~ 505 (716)
T TIGR00198 429 LSEGDIKELKQQ---ILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAE 505 (716)
T ss_pred hHHHHHHHHHHH---HHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHH
Confidence 346667666554 4677888999999999999999999999999995 999999999999 8999999999999999
Q ss_pred CC--CCcHHHHHHHHhhhHhhhc---CCC--CCCCCCCCCCCCCCC--CCCCCC---CC------------CCCHHHHHH
Q 030837 88 FP--TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEPP--QEGRLP---DA------------KQGNDHLRQ 143 (170)
Q Consensus 88 ~~--~VS~ADiialAa~~av~~~---GgP--~~~v~~GR~D~~~s~--~~~~lP---~p------------~~~~~~l~~ 143 (170)
|| .||+||+|+||+..|||.+ ||| .++|.+||.|++... +++..| .+ ......|++
T Consensus 506 f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d 585 (716)
T TIGR00198 506 FAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLD 585 (716)
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHH
Confidence 99 8999999999999999998 897 589999999998762 222222 11 123466899
Q ss_pred HHHHhcCCChhhHHHhhcc-ccccccC
Q 030837 144 VFGAQMGLSDKDIVALSGG-HTLVSAK 169 (170)
Q Consensus 144 ~F~~~~Gl~~~e~VaL~Ga-HtiG~~h 169 (170)
.| .++|||++|||||+|| |++|++|
T Consensus 586 ~a-~~lglt~~EmvaL~Gg~r~lG~~~ 611 (716)
T TIGR00198 586 KA-QLLTLTAPEMTVLIGGMRVLGANH 611 (716)
T ss_pred HH-HhCCCChHHHHheecchhhccccC
Confidence 99 9999999999999999 5999988
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.97 E-value=6.8e-32 Score=245.77 Aligned_cols=152 Identities=29% Similarity=0.444 Sum_probs=131.4
Q ss_pred HHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCCc-cccHHHhhccCcC--chHHHHHHHHhHHhhC--
Q 030837 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANN--GLDIAVRLLEPFKEQF-- 88 (170)
Q Consensus 14 ~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dgs-i~~~~E~~~~~N~--gl~~~~~~i~~iK~~~-- 88 (170)
..|...|.+ ++...-..+.|||++||++.|||.++++||+||+ |||.||++|+.|. +|.+++++|++||++|
T Consensus 439 ~di~~lk~~---i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 439 ADIAALKAK---ILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHH---HHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 345555544 4667778999999999999999999999999995 9999999999999 9999999999999998
Q ss_pred -----CCCcHHHHHHHHhhhHhhhc---CC--CCCCCCCCCCCCCCCC--CC---CCCCCCC------------CCHHHH
Q 030837 89 -----PTISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPP--QE---GRLPDAK------------QGNDHL 141 (170)
Q Consensus 89 -----~~VS~ADiialAa~~av~~~---Gg--P~~~v~~GR~D~~~s~--~~---~~lP~p~------------~~~~~l 141 (170)
|.||+||+|+||+..|||.+ || |.++|.+||.|++... ++ .++|... .....|
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHH
Confidence 68999999999999999998 57 9999999999998763 22 2567543 134789
Q ss_pred HHHHHHhcCCChhhHHHhhccc-cccccC
Q 030837 142 RQVFGAQMGLSDKDIVALSGGH-TLVSAK 169 (170)
Q Consensus 142 ~~~F~~~~Gl~~~e~VaL~GaH-tiG~~h 169 (170)
++.| +++|||++|||||+||| ++|..|
T Consensus 596 ~d~a-~~lglt~~EmvaL~Gg~r~Lg~~~ 623 (726)
T PRK15061 596 VDKA-QLLTLTAPEMTVLVGGLRVLGANY 623 (726)
T ss_pred HHHH-HhCCCChHHHhheecchhhcccCC
Confidence 9999 99999999999999997 788876
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.5e-30 Score=229.18 Aligned_cols=154 Identities=39% Similarity=0.643 Sum_probs=141.4
Q ss_pred HHHHHHHHhhhhhhcC---------CchHHHHHHHhhhccccCCCCCCCCCC-CccccHHHhhccCcCchHHHHHHHHhH
Q 030837 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (170)
Q Consensus 15 ~v~~~~~~l~~~~~~~---------~~a~~~lRL~fHDc~~~d~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (170)
.+.+.|++|.+++.+. +++|.+|||+||-++||+..++.||.. |..||.|+.+||.|.+|++++++|.+|
T Consensus 68 D~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 68 DLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred cHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHHHHhhhH
Confidence 4677899999998874 589999999999999999999999987 599999999999999999999999999
Q ss_pred HhhCC-CCcHHHHHHHHhhhHhhhcCCCCCCCCCCCCCCCCCCC------------------------------------
Q 030837 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------------------------ 127 (170)
Q Consensus 85 K~~~~-~VS~ADiialAa~~av~~~GgP~~~v~~GR~D~~~s~~------------------------------------ 127 (170)
|.+|+ .|||||+|+|++..|++.+|++.+.|..||.|-..+..
T Consensus 148 KkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYV 227 (730)
T COG0376 148 KKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYV 227 (730)
T ss_pred hHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEe
Confidence 99998 99999999999999999999999999999999877632
Q ss_pred --C--CCCCCCCCCHHHHHHHHHHhcCCChhhHHHhh-ccccccccC
Q 030837 128 --E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSAK 169 (170)
Q Consensus 128 --~--~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~-GaHtiG~~h 169 (170)
+ +..|+|..+..+++..| ++|+++++|+|||+ ||||+|++|
T Consensus 228 NPEGpng~PDpl~aA~dIRetF-aRMaMNDeETVALiaGGHtfGKtH 273 (730)
T COG0376 228 NPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTH 273 (730)
T ss_pred CCCCCCCCCChhhhHHHHHHHH-HHhcCCcHhhhhhhhccccccccc
Confidence 1 24788888999999999 99999999999997 699999998
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.58 E-value=2.4e-15 Score=133.50 Aligned_cols=148 Identities=28% Similarity=0.439 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhhhhhhcCCchHHHHHHHhhhccccCCCCCCCCCCC-ccccHHHhhccCcCc--hHHHHHHHHhHHhhC
Q 030837 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANNG--LDIAVRLLEPFKEQF 88 (170)
Q Consensus 12 v~~~v~~~~~~l~~~~~~~~~a~~~lRL~fHDc~~~d~s~~~gG~dg-si~~~~E~~~~~N~g--l~~~~~~i~~iK~~~ 88 (170)
+.+.|...|.+ ++...-..+.++..+|-.+.||..|++.||+|| .|++.|+++|+.|.. |.+.+.+++.|++++
T Consensus 447 ~d~di~~lK~~---IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~f 523 (730)
T COG0376 447 VDADIAALKAK---ILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEF 523 (730)
T ss_pred chHHHHHHHHH---HHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34555555544 577778899999999999999999999999998 899999999999964 778999999999999
Q ss_pred C-CCcHHHHHHHHhhhHhhhc---CC--CCCCCCCCCCCCCCCCC--C---CCCCC------------CCCCHHHHHHHH
Q 030837 89 P-TISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPPQ--E---GRLPD------------AKQGNDHLRQVF 145 (170)
Q Consensus 89 ~-~VS~ADiialAa~~av~~~---Gg--P~~~v~~GR~D~~~s~~--~---~~lP~------------p~~~~~~l~~~F 145 (170)
. .||.||+|+|++..+||.+ +| -.+||.+||.|+.+... + ..-|- ......-|+++-
T Consensus 524 nkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA 603 (730)
T COG0376 524 NKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA 603 (730)
T ss_pred cCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH
Confidence 7 7999999999999999864 34 45789999999977521 1 01111 111234477888
Q ss_pred HHhcCCChhhHHHhhccc
Q 030837 146 GAQMGLSDKDIVALSGGH 163 (170)
Q Consensus 146 ~~~~Gl~~~e~VaL~GaH 163 (170)
+.++||.-||++|+||.
T Consensus 604 -qlL~LtapemtVLiGGl 620 (730)
T COG0376 604 -QLLTLTAPEMTVLIGGL 620 (730)
T ss_pred -HHhccCCccceEEEcce
Confidence 88999999999999873
No 19
>PRK12346 transaldolase A; Provisional
Probab=45.08 E-value=21 Score=30.80 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=49.3
Q ss_pred HHHHHHhHHhhCCCCcHHHHHHHHhhhHh--hhcCCCCCCCCCCCCCCCCCC--CCCCC-CCCC---CCHHHHHHHHHHh
Q 030837 77 AVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPP--QEGRL-PDAK---QGNDHLRQVFGAQ 148 (170)
Q Consensus 77 ~~~~i~~iK~~~~~VS~ADiialAa~~av--~~~GgP~~~v~~GR~D~~~s~--~~~~l-P~p~---~~~~~l~~~F~~~ 148 (170)
|++.++.++++ .|+|-=.+.+....++ ..+|-..+..+.||-|-+.-. +...+ |... ..+.++.++| ++
T Consensus 138 Gi~A~~~L~~~--GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~ 214 (316)
T PRK12346 138 GIRAAEELEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY-KQ 214 (316)
T ss_pred HHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHH-HH
Confidence 44444444433 3333333334333333 346888899999998764321 11112 1112 3567888888 78
Q ss_pred cCCC----------hhhHHHhhccccc
Q 030837 149 MGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 149 ~Gl~----------~~e~VaL~GaHti 165 (170)
.|+. ..|+.+|.|.|.+
T Consensus 215 ~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 215 HRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 7753 6788899999854
No 20
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=44.69 E-value=26 Score=31.07 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=49.4
Q ss_pred HHHHHHhHHhhCCCCcHHHHHHHHhhhHh--hhcCCCCCCCCCCCCCCCCCCCC--CCCCCCCC----CHHHHHHHHHHh
Q 030837 77 AVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQE--GRLPDAKQ----GNDHLRQVFGAQ 148 (170)
Q Consensus 77 ~~~~i~~iK~~~~~VS~ADiialAa~~av--~~~GgP~~~v~~GR~D~~~s~~~--~~lP~p~~----~~~~l~~~F~~~ 148 (170)
|++.+..++++ .|.|-=.+.+....|+ ..+|-..+..+.||.|-+.-... ..+|...+ .+.++.++| +.
T Consensus 143 Gi~A~~~L~~~--GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~-~~ 219 (391)
T PRK12309 143 GIKAAEVLEKE--GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY-KK 219 (391)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHH-Hh
Confidence 45555555443 2333222333333333 23688889999999876443211 12443322 467788888 77
Q ss_pred cCCC----------hhhHHHhhccccc
Q 030837 149 MGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 149 ~Gl~----------~~e~VaL~GaHti 165 (170)
.|+. ..|+..|.|.|.+
T Consensus 220 ~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 220 FGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred cCCCcEEEecccCCHHHHHHHHCCCee
Confidence 7753 6788888998854
No 21
>PTZ00411 transaldolase-like protein; Provisional
Probab=44.08 E-value=24 Score=30.68 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=37.8
Q ss_pred hcCCCCCCCCCCCCCCCCCCC--CCCCC-CCC---CCHHHHHHHHHHhcCC----------ChhhHHHhhccccc
Q 030837 107 VTGGPDIPFHPGRDDKAEPPQ--EGRLP-DAK---QGNDHLRQVFGAQMGL----------SDKDIVALSGGHTL 165 (170)
Q Consensus 107 ~~GgP~~~v~~GR~D~~~s~~--~~~lP-~p~---~~~~~l~~~F~~~~Gl----------~~~e~VaL~GaHti 165 (170)
.+|-..+..+.||-+-+.-.+ ....+ ... ..+.++.++| +..|+ +.+|+..|.|.|.+
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY-KKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHH-HHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 357788899999986543221 11122 122 2567788888 78776 36788889999854
No 22
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=39.63 E-value=35 Score=29.38 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=48.4
Q ss_pred HHHHHHhHHhhCCCCcHHHHHHHHhhhHh--hhcCCCCCCCCCCCCCCCCCCCCC--CCCC----CCCCHHHHHHHHHHh
Q 030837 77 AVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGNDHLRQVFGAQ 148 (170)
Q Consensus 77 ~~~~i~~iK~~~~~VS~ADiialAa~~av--~~~GgP~~~v~~GR~D~~~s~~~~--~lP~----p~~~~~~l~~~F~~~ 148 (170)
|++.++.++++ .|+|-=.+.+....|+ ..+|-..+..+.||-|-+.-...+ ..+. +-..+.++.++| ++
T Consensus 137 Gi~A~~~L~~~--GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~-~~ 213 (313)
T cd00957 137 GIQAAKQLEKE--GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY-KK 213 (313)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHH-HH
Confidence 45555555443 2333322333333333 235777889999998754221111 1111 123577888888 78
Q ss_pred cCCC----------hhhHHHhhccccc
Q 030837 149 MGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 149 ~Gl~----------~~e~VaL~GaHti 165 (170)
.|+. ..|+..|.|.|.+
T Consensus 214 ~~~~T~vmaASfRn~~~v~~laG~d~~ 240 (313)
T cd00957 214 FGYKTKVMGASFRNIGQILALAGCDYL 240 (313)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCeE
Confidence 8864 6778888888853
No 23
>PRK05269 transaldolase B; Provisional
Probab=37.36 E-value=22 Score=30.68 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=37.7
Q ss_pred hcCCCCCCCCCCCCCCCCCCC---CCCCC---CCCCCHHHHHHHHHHhcCCC----------hhhHHHhhccccc
Q 030837 107 VTGGPDIPFHPGRDDKAEPPQ---EGRLP---DAKQGNDHLRQVFGAQMGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 107 ~~GgP~~~v~~GR~D~~~s~~---~~~lP---~p~~~~~~l~~~F~~~~Gl~----------~~e~VaL~GaHti 165 (170)
.+|-..+..+.||-|-+.-.. ...-+ ++-..+.++.+.| +..|+. ..++..|.|.|++
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY-KKHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH-HHcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 457788899999987542211 00011 1223578888899 788764 5777888898865
No 24
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=35.22 E-value=16 Score=27.81 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=28.8
Q ss_pred CCCCCC----CCHHHHHHHHHHhcCCChhhH-HHhhccccccccC
Q 030837 130 RLPDAK----QGNDHLRQVFGAQMGLSDKDI-VALSGGHTLVSAK 169 (170)
Q Consensus 130 ~lP~p~----~~~~~l~~~F~~~~Gl~~~e~-VaL~GaHtiG~~h 169 (170)
.+|... +++.+.+-.| .++||++.++ |.|--+|-||.++
T Consensus 21 ~~PtWlK~~~ddvkeqI~K~-akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 21 SVPTWLKLTADDVKEQIYKL-AKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred CCcHHHhcCHHHHHHHHHHH-HHcCCChhHceeeeecccCcchhh
Confidence 355553 3566677888 8999999998 5677889888753
No 25
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=34.59 E-value=17 Score=30.19 Aligned_cols=87 Identities=13% Similarity=-0.038 Sum_probs=48.0
Q ss_pred HHHHHHHhHHhhCCCCcHHHHHHHHhhhHh--hhcCCCCCCCCCCCCCCCCCCC-CCCCCCCC--C---CHHHHHHHHHH
Q 030837 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQ-EGRLPDAK--Q---GNDHLRQVFGA 147 (170)
Q Consensus 76 ~~~~~i~~iK~~~~~VS~ADiialAa~~av--~~~GgP~~~v~~GR~D~~~s~~-~~~lP~p~--~---~~~~l~~~F~~ 147 (170)
.|++.++.++++ .|++-=.+.+....++ ..+|...+.++.||.|...-.. ...-+++. . .+.++.+.| +
T Consensus 127 ~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~-~ 203 (252)
T cd00439 127 EGIPAIKDLIAA--GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLY-K 203 (252)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHH-H
Confidence 466666666554 2222222233333333 2357778899999998755411 11111121 2 345677777 6
Q ss_pred hcCCC----------hhhHHHhhccccc
Q 030837 148 QMGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 148 ~~Gl~----------~~e~VaL~GaHti 165 (170)
..|.. .+++..|.|.|++
T Consensus 204 ~~~~~tkiL~AS~r~~~~v~~l~G~d~v 231 (252)
T cd00439 204 QKFKKQRVLWASFSDTLYVAPLIGCDTV 231 (252)
T ss_pred HhCCCCeEEEEeeCCHHHHHHhhCCCee
Confidence 66653 5677777888865
No 26
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=30.12 E-value=43 Score=28.92 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=38.3
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCC--CCCC----CCCCHHHHHHHHHHhcCCC----------hhhHHHhhccccc
Q 030837 106 EVTGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGNDHLRQVFGAQMGLS----------DKDIVALSGGHTL 165 (170)
Q Consensus 106 ~~~GgP~~~v~~GR~D~~~s~~~~--~lP~----p~~~~~~l~~~F~~~~Gl~----------~~e~VaL~GaHti 165 (170)
..+|-..+..+.||-+-+.-...+ ..+. +-..+.++.++| +..|+. .+|+..|.|.|.+
T Consensus 166 a~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~-k~~g~~T~Im~ASfRn~~qv~~laG~d~~ 240 (317)
T TIGR00874 166 AEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY-KKHGYPTEVMGASFRNKEEILALAGCDRL 240 (317)
T ss_pred HHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHH-HHcCCCcEEEeeccCCHHHHHHHHCCCeE
Confidence 346888899999998664221111 1111 223677888889 788863 6788888998854
No 27
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=27.21 E-value=57 Score=22.39 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCChhhHHHhhccc
Q 030837 138 NDHLRQVFGAQMGLSDKDIVALSGGH 163 (170)
Q Consensus 138 ~~~l~~~F~~~~Gl~~~e~VaL~GaH 163 (170)
-+.|-..| +++||+..||-.|+-+.
T Consensus 10 GDtLs~iF-~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 10 GDTLSTIF-RRAGLSASDLYAVLEAD 34 (85)
T ss_dssp T--HHHHH-HHTT--HHHHHHHHHHG
T ss_pred CCcHHHHH-HHcCCCHHHHHHHHhcc
Confidence 36788999 89999999999887543
No 28
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=26.38 E-value=1.7e+02 Score=19.02 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=24.0
Q ss_pred CchHHHHHHHHhHHhhC-----CCCcHHHHHHHHhhhHhhhcC
Q 030837 72 NGLDIAVRLLEPFKEQF-----PTISYADLYQLAGVVGVEVTG 109 (170)
Q Consensus 72 ~gl~~~~~~i~~iK~~~-----~~VS~ADiialAa~~av~~~G 109 (170)
..+.+.++.+++.-..- ..+|.||+..+..-.-+...+
T Consensus 31 ~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~ 73 (95)
T PF00043_consen 31 AKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLG 73 (95)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhC
Confidence 34456677777654432 289999998888766555433
No 29
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=25.49 E-value=40 Score=27.30 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=45.2
Q ss_pred HHHHHHHhHHhhCCCCcHHHHHHHHhhhHh--hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCC-
Q 030837 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLS- 152 (170)
Q Consensus 76 ~~~~~i~~iK~~~~~VS~ADiialAa~~av--~~~GgP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~- 152 (170)
.|++.+..++++ .|.+--...+....|+ ..+|--.+..+.||-|...- ++..-+.++.+.| +..|++
T Consensus 89 ~Gl~A~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~-------dg~~~v~~~~~~~-~~~~~~t 158 (213)
T TIGR00875 89 EGLKAVKILKKE--GIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGG-------DGMKLIEEVKTIF-ENHAPDT 158 (213)
T ss_pred HHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEeecchHHHcCC-------CHHHHHHHHHHHH-HHcCCCC
Confidence 467777777654 1111111122222222 12465567899999876432 2344567888888 777765
Q ss_pred ---------hhhHH--Hhhccccc
Q 030837 153 ---------DKDIV--ALSGGHTL 165 (170)
Q Consensus 153 ---------~~e~V--aL~GaHti 165 (170)
++++. +++|+|++
T Consensus 159 kIlaAS~r~~~~v~~~~~~G~d~v 182 (213)
T TIGR00875 159 EVIAASVRHPRHVLEAALIGADIA 182 (213)
T ss_pred EEEEeccCCHHHHHHHHHcCCCEE
Confidence 34554 46788764
No 30
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=23.67 E-value=30 Score=27.52 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=10.9
Q ss_pred hHHHhhccccccccCC
Q 030837 155 DIVALSGGHTLVSAKL 170 (170)
Q Consensus 155 e~VaL~GaHtiG~~hc 170 (170)
|++-= =||++|-.||
T Consensus 127 Ev~HE-lGH~~GL~HC 141 (181)
T COG1913 127 EVLHE-LGHLLGLSHC 141 (181)
T ss_pred HHHHH-hhhhcCcccC
Confidence 44333 3699999999
No 31
>PF10937 DUF2638: Protein of unknown function (DUF2638); InterPro: IPR020373 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a component of the mitochondrial small ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S). This entry is represented by a mitochondrial ribosomal protein of the small subunit, which has similarity to human mitochondrial ribosomal protein MRP-S36 [, , ].
Probab=22.89 E-value=88 Score=22.86 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChhhHHHhh
Q 030837 130 RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (170)
Q Consensus 130 ~lP~p~~~~~~l~~~F~~~~Gl~~~e~VaL~ 160 (170)
.++....+..+|=.+| .++.++.+||=++.
T Consensus 79 ~~~g~~~~~~eLP~Rf-rr~p~se~EiE~In 108 (112)
T PF10937_consen 79 PLKGEYFDRSELPARF-RRKPISEEEIEAIN 108 (112)
T ss_pred CCCcceeeHHHcCHhH-ccCCCCHHHHHHHH
Confidence 3445567889999999 89999999998875
No 32
>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=22.81 E-value=98 Score=19.83 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhhhcCC-------chHHHHHHHhhhcccc
Q 030837 14 KAVEKCKRKLRGFIAEKN-------CAPLMLRIAWHSAGTY 47 (170)
Q Consensus 14 ~~v~~~~~~l~~~~~~~~-------~a~~~lRL~fHDc~~~ 47 (170)
.-|.+.+++|.+|++++. -....-|+.-|++.-|
T Consensus 3 ~~~l~~E~~i~~Fi~~~~~~~~~f~pm~sy~RllvH~la~~ 43 (63)
T cd02642 3 LFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQY 43 (63)
T ss_pred hHHHHHHHHHHHHHhCCCCCeeEcCCCCcHHHHHHHHHHHH
Confidence 345566777888888762 2447889999999753
No 33
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=22.07 E-value=66 Score=25.69 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCChhhHHHhhccc
Q 030837 139 DHLRQVFGAQMGLSDKDIVALSGGH 163 (170)
Q Consensus 139 ~~l~~~F~~~~Gl~~~e~VaL~GaH 163 (170)
.++..+| +++|+++.|.+.++..|
T Consensus 108 ~~la~wF-~~~Gi~IHd~ti~Ip~~ 131 (188)
T PF09533_consen 108 EELAEWF-ERRGIDIHDYTIPIPRD 131 (188)
T ss_pred HHHHHHH-HHcCCChhheeEecCHH
Confidence 5799999 99999999988877543
No 34
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=21.48 E-value=1.3e+02 Score=17.90 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCChhhHHHhh
Q 030837 140 HLRQVFGAQMGLSDKDIVALS 160 (170)
Q Consensus 140 ~l~~~F~~~~Gl~~~e~VaL~ 160 (170)
+|.... ...||+..+++.+|
T Consensus 12 ~L~~~~-~~~~l~~~~vl~~S 31 (45)
T PF09388_consen 12 ELNELA-EKKGLTDPEVLELS 31 (45)
T ss_dssp HHHHHH-HHCCTTCHHHHHHH
T ss_pred HHHHHH-HHcCCCCHHHHHHH
Confidence 455666 77799999999886
No 35
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=20.17 E-value=70 Score=26.88 Aligned_cols=30 Identities=30% Similarity=0.635 Sum_probs=23.0
Q ss_pred CchHHHHHHHHhHHhhC--C-------------CCcHHHHHHHHh
Q 030837 72 NGLDIAVRLLEPFKEQF--P-------------TISYADLYQLAG 101 (170)
Q Consensus 72 ~gl~~~~~~i~~iK~~~--~-------------~VS~ADiialAa 101 (170)
-||..+++.++++|+++ | +-..+|+||+-|
T Consensus 71 pGLeeglki~~~vK~efgv~ilTDVHe~~q~~~vA~VvDilQiPA 115 (279)
T COG2877 71 PGLEEGLKILQEVKEEFGVPILTDVHEPSQAQPVAEVVDVLQIPA 115 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCceeeccCChhhcchHHhhhhhhcchH
Confidence 37889999999999987 2 224578888765
Done!